BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035374
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52026|DPO1_GEOSE DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1
SV=2
Length = 876
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 1 MASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ S+ E KYG L P Q VD+ L+GDK+DNIPGV GIG+ AV+L+ +FG +
Sbjct: 157 IESYTPETVVEKYG-LTPEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTV 211
>sp|Q04957|DPO1_BACCA DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1
Length = 877
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
E KYG L P Q VD+ L+GDK+DNIPGV GIG+ AV+L+ +FG +
Sbjct: 163 EAVREKYG-LTPEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTV 211
>sp|P80194|DPO1_THECA DNA polymerase I, thermostable OS=Thermus caldophilus GN=polA PE=1
SV=2
Length = 834
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Query: 11 RKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+KYG LKP Q+VD +LVGD +DN+PGV+GIG+ A++L+ ++G L
Sbjct: 171 QKYG-LKPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSL 215
>sp|P52028|DPO1T_THET8 DNA polymerase I, thermostable OS=Thermus thermophilus (strain HB8
/ ATCC 27634 / DSM 579) GN=polA PE=3 SV=2
Length = 834
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 12 KYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
KYG L+P Q+VD +LVGD +DN+PGV+GIG+ A++L+ ++G L
Sbjct: 172 KYG-LRPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSL 215
>sp|Q9KAV6|EX53_BACHD 5'-3' exonuclease OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=BH2180 PE=3
SV=1
Length = 303
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
E+F Y + P+Q+VDV +L+GDK+DNIPG G+G+ A+ LI ++G +
Sbjct: 171 ENFRNDY-NISPAQWVDVKALLGDKSDNIPGCPGVGEKSALPLIQQYGTI 219
>sp|P30313|DPO1F_THETH DNA polymerase I, thermostable OS=Thermus thermophilus GN=polA PE=1
SV=1
Length = 831
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 12 KYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
KYG L+P Q+VD +L GD +DNIPGV+GIG+ A +LI ++G L
Sbjct: 170 KYG-LRPEQWVDYRALAGDPSDNIPGVKGIGEKTAQRLIREWGSL 213
>sp|O08307|DPO1_CHLAA DNA polymerase I OS=Chloroflexus aurantiacus (strain ATCC 29366 /
DSM 635 / J-10-fl) GN=polA PE=3 SV=1
Length = 942
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 4 FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ +E ++Y L+P Q D+ L GD +DNIPGV GIG+ A+ L+ +F L
Sbjct: 164 YDLEQVRKRYDGLEPDQLADLRGLKGDTSDNIPGVRGIGEKGAIALLKQFRSL 216
>sp|O67550|EX53_AQUAE 5'-3' exonuclease OS=Aquifex aeolicus (strain VF5) GN=aq_1628 PE=3
SV=1
Length = 289
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 4 FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54
F E +K+G ++P + D ++LVGDK DN+PG+EG+G A+ ++ K+G
Sbjct: 155 FTKERVIKKFG-VEPQKIPDYLALVGDKVDNVPGIEGVGPKTAINILKKYG 204
>sp|O52225|DPO1_THEFI DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1
SV=1
Length = 833
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54
+D KYG + P ++VD +L GD++DNIPGV GIG+ A++L+ ++G
Sbjct: 165 KDVQEKYG-VPPERWVDFRALTGDRSDNIPGVAGIGEKTALRLLAEWG 211
>sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable OS=Thermus aquaticus GN=polA PE=1
SV=1
Length = 832
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 12 KYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
KYG L+P Q+ D +L GD++DN+PGV+GIG+ A +L+ ++G L
Sbjct: 171 KYG-LRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSL 214
>sp|O34996|DPO1_BACSU DNA polymerase I OS=Bacillus subtilis (strain 168) GN=polA PE=3
SV=1
Length = 880
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF 53
E KYG L P Q +D+ L+GD +DNIPGV G+G+ A++L+ +F
Sbjct: 165 EHVKEKYG-LTPEQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQF 210
>sp|P57506|EX53_BUCAI 5'-3' exonuclease OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=BU431 PE=3 SV=1
Length = 286
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF 53
E KYG +KP +F+D ++L+GD DNIPGV IG A+ LI KF
Sbjct: 164 EIIQEKYG-IKPKEFIDFLALMGDATDNIPGVPKIGIKTALFLINKF 209
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML--VFN 59
++ K+G P + +V++L+GD++DNIPGV IG A LITKFG + +FN
Sbjct: 161 DNVVTKFGT-TPDKLREVMALIGDRSDNIPGVPSIGPKTASSLITKFGSVENIFN 214
>sp|P74933|DPO1_TREPA DNA polymerase I OS=Treponema pallidum (strain Nichols) GN=polA
PE=3 SV=2
Length = 997
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 18 PSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
P+Q +D+ SL+GD +DN+PGV GIG A L+ FG L
Sbjct: 176 PTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTL 214
>sp|P75403|EX53_MYCPN 5'-3' exonuclease OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=polA PE=3 SV=1
Length = 291
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 1 MASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
M + ++FA ++ L P Q ++ LVGD +DN+ G++GIG + + L+ ++G +
Sbjct: 160 MKEYNTDNFAEQFFGLTPKQVIEYKGLVGDNSDNLTGIKGIGPKKGIDLLKQYGTI 215
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML--VFN 59
+D K+G P + +V++L+GD++DNIPGV IG A LIT+FG + +FN
Sbjct: 161 DDVIIKFGT-TPDKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFN 214
>sp|Q49406|EX53_MYCGE 5'-3' exonuclease OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=polA PE=3 SV=1
Length = 291
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 1 MASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
M + E+F + L P Q V+ LVGD +DN+ G++GIG ++ ++L+ ++G +
Sbjct: 160 MVMYNNENFKSLFYGLAPYQVVEYKGLVGDNSDNLAGIKGIGPIKGIELLQQYGTI 215
>sp|P56105|DPO1_HELPY DNA polymerase I OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=polA PE=3 SV=2
Length = 891
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 4 FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
F +D KYG L PSQF D +VGD +DN GV+GIG A +L+ + G L
Sbjct: 161 FLAKDCVEKYGIL-PSQFTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSL 212
>sp|P0A550|DPO1_MYCTU DNA polymerase I OS=Mycobacterium tuberculosis GN=polA PE=3 SV=1
Length = 904
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 1 MASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ F E KYG L P Q+ D +L GD +DN+PG+ G+G+ A + I ++G L
Sbjct: 171 LTRFTPEAVVEKYG-LTPRQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSL 225
>sp|P0A551|DPO1_MYCBO DNA polymerase I OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=polA PE=3 SV=1
Length = 904
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 1 MASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ F E KYG L P Q+ D +L GD +DN+PG+ G+G+ A + I ++G L
Sbjct: 171 LTRFTPEAVVEKYG-LTPRQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSL 225
>sp|Q8K9D0|EX53_BUCAP 5'-3' exonuclease OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=pol PE=3 SV=1
Length = 287
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF 53
E KYG + P +F+D+++L+GD +DNIPGV IG A+ L+ KF
Sbjct: 164 EKIQEKYG-IYPKEFIDLLALMGDSSDNIPGVPKIGIKTALFLLKKF 209
>sp|P46835|DPO1_MYCLE DNA polymerase I OS=Mycobacterium leprae (strain TN) GN=polA PE=3
SV=1
Length = 911
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 1 MASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGM---LV 57
+ F E KYG + P+Q+ D+ +L GD +DN+PG+ G+G+ A + I +G LV
Sbjct: 172 LTRFTPEAVIEKYG-VTPAQYPDLAALRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLV 230
Query: 58 FNVE 61
NVE
Sbjct: 231 DNVE 234
>sp|Q9ZJE9|DPO1_HELPJ DNA polymerase I OS=Helicobacter pylori (strain J99) GN=polA PE=3
SV=1
Length = 897
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 4 FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
F +D KYG L PSQF D +VGD +DN GV+GIG A +L+ + G L
Sbjct: 161 FLAKDCVEKYGIL-PSQFTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSL 212
>sp|Q9S1G2|DPO1_RHILE DNA polymerase I OS=Rhizobium leguminosarum GN=polA PE=3 SV=1
Length = 1016
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 5 GMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
G+ D K+G + P + +D+ ++ GD DN+PG+ GIG A QL+ ++G L
Sbjct: 184 GIPDVIEKWG-VPPEKMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDL 234
>sp|P59200|DPO1_STRR6 DNA polymerase I OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=polA PE=3 SV=1
Length = 877
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
L P+QF+D+ +L+GDK+DNIPGV +G+ ++L+ + G L
Sbjct: 176 LTPAQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSL 216
>sp|P59199|DPO1_STRPN DNA polymerase I OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=polA PE=3 SV=1
Length = 877
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
L P+QF+D+ +L+GDK+DNIPGV +G+ ++L+ + G L
Sbjct: 176 LTPAQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSL 216
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML--VFN 59
+D +K+G + +V++L+GD++DNIPGV IG A LIT+FG + +FN
Sbjct: 161 DDVVKKFGTTS-DKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFN 214
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 4 FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
G E+ KYG + P +D ++L+GD +DNIPGV G+G+ A L+ G L
Sbjct: 160 LGPEEVVNKYG-VPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGL 211
>sp|O32801|DPO1_LACLM DNA polymerase I OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=polA PE=3 SV=2
Length = 877
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
L PSQF+D+ +L+GD +DN PGV +G+ ++L+ +FG L
Sbjct: 179 LTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSL 219
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML--VFN 59
+D +K+G + +V++L+GD++DNIPGV IG A LIT+FG + +FN
Sbjct: 161 DDVVKKFGTTS-DKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFN 214
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML--VFN 59
+D +K+G + +V++L+GD++DNIPGV IG A LIT+FG + +FN
Sbjct: 161 DDVVKKFGTTS-DKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFN 214
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 4 FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
G ++ KYG + P +D ++L+GD +DNIPGV G+G+ A L+ G L
Sbjct: 160 LGPDEVVNKYG-VPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGL 211
>sp|Q9CDS1|DPO1_LACLA DNA polymerase I OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=polA PE=3 SV=1
Length = 877
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
L P+QF+D+ +L+GD +DN PGV +G+ ++L+ +FG L
Sbjct: 179 LTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSL 219
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA
PE=3 SV=1
Length = 871
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML--VFN 59
++ K+G + + +V++L+GDK+DNIPGV IG A LIT+FG + +FN
Sbjct: 161 DNVVEKFG-VTSDKLREVMALIGDKSDNIPGVPSIGPKTASSLITQFGTVENIFN 214
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 12 KYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLV---FNVECFSEM 66
KYG + P +D ++L+GD ADNIPGV G+G+ A+ L+ G + N+E +E+
Sbjct: 168 KYG-IPPELIIDYLALMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAEL 224
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ P+Q VD +L GDK+D IPG+ GIG+ A++L+ ++ L
Sbjct: 187 VTPAQIVDFKALCGDKSDCIPGINGIGEKTAIKLLAEYETL 227
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 4 FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ +E+ KYG + +Q D +LVGD++DNIPGV+GIG+ A +L+ ++ L
Sbjct: 160 YTVENVKEKYG-VWANQVPDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSL 211
>sp|B0TPG7|XNI_SHEHH Protein Xni OS=Shewanella halifaxensis (strain HAW-EB4) GN=xni PE=3
SV=1
Length = 252
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 6 MEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+E+ +K G ++ +QF+D ++L GD + IPGV GIG AV+L+ F L
Sbjct: 152 IEEMEKKLG-VESTQFIDYLALAGDSGNKIPGVPGIGPKSAVELLKIFRSL 201
>sp|P52027|DPO1_DEIRA DNA polymerase I OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=polA PE=3 SV=2
Length = 956
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 GMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
G KYG + Q+VD +L GD +DNIPG +GIG A +L+ ++G L
Sbjct: 199 GPAQVEEKYG-VTVRQWVDYRALTGDASDNIPGAKGIGPKTAAKLLQEYGTL 249
>sp|C4L9Z0|XNI_TOLAT Protein Xni OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=xni
PE=3 SV=1
Length = 260
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 11 RKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
++YG L+PSQ VD +L G NI GV GIG+ A QL++++G L
Sbjct: 164 QQYG-LQPSQLVDFWALTGISGMNIKGVPGIGEKTAQQLLSEYGTL 208
>sp|Q07ZE8|XNI_SHEFN Protein Xni OS=Shewanella frigidimarina (strain NCIMB 400) GN=xni
PE=3 SV=1
Length = 255
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 4 FGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
F +E + +K G ++ Q +D I+L GD + IPG+ GIG A L+ KF L
Sbjct: 150 FDVEQYEKKLG-IEQYQMLDFIALAGDSGNKIPGIMGIGPKSAADLLNKFRTL 201
>sp|A3QGM4|XNI_SHELP Protein Xni OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
GN=xni PE=3 SV=1
Length = 256
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 6 MEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+ED R+ G + SQF+D +++ GD + IPG+ GIG A +L+ F L
Sbjct: 152 IEDRERQLG-VDRSQFIDFLAMAGDSGNKIPGIPGIGPKSACELLKTFRTL 201
>sp|A8FYJ2|XNI_SHESH Protein Xni OS=Shewanella sediminis (strain HAW-EB3) GN=xni PE=3
SV=1
Length = 255
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 6 MEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+E+ K G ++ SQF+D ++L GD + IPGV GIG A++L+ F L
Sbjct: 152 IEEREEKLG-VEHSQFIDYLALAGDSGNKIPGVPGIGPKSAIELLRTFRSL 201
>sp|Q47YA8|XNI_COLP3 Protein Xni OS=Colwellia psychrerythraea (strain 34H / ATCC
BAA-681) GN=xni PE=3 SV=1
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
E+ + +K SQ +D +L GD + I GV GIG V A +L+ ++G L
Sbjct: 172 EEHVQSKFSVKTSQLIDFWTLTGDNTNKIEGVSGIGQVTAAKLLNQYGSL 221
>sp|Q12L39|XNI_SHEDO Protein Xni OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=xni PE=3 SV=1
Length = 252
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 20 QFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
QF+D I+L GD + IPG+ GIG A L+ KF L
Sbjct: 165 QFLDFIALAGDSGNKIPGIAGIGPKSAADLLNKFRTL 201
>sp|O51498|DPO1_BORBU DNA polymerase I OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=polA PE=3 SV=1
Length = 908
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
E +K+G + Q D +++VGD++DNIPG++GIG A L+ +F L
Sbjct: 162 EYVTKKFG-VNSFQIKDYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTL 210
>sp|A8H6V6|XNI_SHEPA Protein Xni OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=xni PE=3 SV=1
Length = 256
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 6 MEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLI 50
+E+ +K G ++ SQ +D ++L GD + IPGV GIG AV+L+
Sbjct: 152 IEEMEKKLG-IERSQLIDYLALAGDSGNKIPGVPGIGPKSAVELL 195
>sp|P54161|EX53_BACSU 5'-3' exonuclease OS=Bacillus subtilis (strain 168) GN=ypcP PE=1
SV=1
Length = 296
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 7 EDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF 53
E F + G + P +D+ +L+GD +DN PGV+GIG+ A +LI ++
Sbjct: 167 ETFYEETGVM-PKALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREY 212
>sp|Q89AD1|EX53_BUCBP 5'-3' exonuclease OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=pol PE=3 SV=1
Length = 302
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 11 RKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
+KYG + P D++ L+GD +DNIPGV +G A+ L+ FG L
Sbjct: 168 KKYG-IIPKLIPDLLGLMGDNSDNIPGVPTVGKKTALILLKTFGSL 212
>sp|A1RLT6|XNI_SHESW Protein Xni OS=Shewanella sp. (strain W3-18-1) GN=xni PE=3 SV=1
Length = 262
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 19 SQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56
SQF+D+++L GD + IPG+ GIG A +L+ F L
Sbjct: 164 SQFLDLMALAGDSGNKIPGIAGIGPKSAAELLKTFRTL 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,207,978
Number of Sequences: 539616
Number of extensions: 723534
Number of successful extensions: 2112
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1981
Number of HSP's gapped (non-prelim): 158
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)