Query 035374
Match_columns 66
No_of_seqs 124 out of 1068
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exn_A 5'-exonuclease, 5'-nucl 99.9 1.2E-24 4.2E-29 151.8 6.5 64 2-66 172-236 (290)
2 1rxw_A Flap structure-specific 99.8 1.4E-20 4.7E-25 131.7 7.6 59 3-64 208-266 (336)
3 2izo_A FEN1, flap structure-sp 99.8 6.5E-20 2.2E-24 129.0 6.1 60 3-65 206-266 (346)
4 3q8k_A Flap endonuclease 1; he 99.8 1.2E-19 3.9E-24 128.3 7.4 61 2-65 204-264 (341)
5 3ory_A Flap endonuclease 1; hy 99.8 5.8E-20 2E-24 130.8 4.9 59 3-64 223-282 (363)
6 1b43_A Protein (FEN-1); nuclea 99.8 1.7E-19 5.9E-24 126.3 5.6 60 3-65 209-269 (340)
7 1bgx_T TAQ DNA polymerase; DNA 99.8 2E-21 6.7E-26 149.4 -5.3 63 3-66 162-224 (832)
8 1a76_A Flap endonuclease-1 pro 99.8 5.2E-19 1.8E-23 123.3 7.2 60 2-65 196-257 (326)
9 1ul1_X Flap endonuclease-1; pr 99.7 8.1E-18 2.8E-22 119.7 6.6 60 3-65 205-264 (379)
10 3qe9_Y Exonuclease 1; exonucle 99.7 1.3E-16 4.3E-21 113.2 5.9 59 4-64 195-258 (352)
11 3h7i_A Ribonuclease H, RNAse H 99.3 4.2E-14 1.5E-18 99.6 -1.3 38 5-44 174-211 (305)
12 2a1j_A DNA repair endonuclease 98.5 9.1E-08 3.1E-12 53.2 3.0 28 35-62 6-33 (63)
13 1z00_B DNA repair endonuclease 98.3 4.9E-07 1.7E-11 53.0 3.5 27 36-62 21-47 (84)
14 1kft_A UVRC, excinuclease ABC 98.1 1.6E-06 5.5E-11 49.1 2.0 30 33-62 24-53 (78)
15 1x2i_A HEF helicase/nuclease; 98.0 4.6E-06 1.6E-10 46.0 3.2 27 36-62 17-43 (75)
16 1z00_A DNA excision repair pro 97.9 7.1E-06 2.4E-10 47.3 3.4 28 35-62 21-48 (89)
17 2nrt_A Uvrabc system protein C 97.9 5.3E-06 1.8E-10 56.1 2.8 28 35-62 170-197 (220)
18 2a1j_B DNA excision repair pro 97.9 8.6E-06 2.9E-10 47.3 3.2 28 35-62 34-61 (91)
19 3c65_A Uvrabc system protein C 97.6 1E-05 3.6E-10 54.8 0.0 29 34-62 174-202 (226)
20 2bgw_A XPF endonuclease; hydro 97.4 9.7E-05 3.3E-09 48.3 2.7 27 36-62 165-191 (219)
21 1ixr_A Holliday junction DNA h 97.2 0.00023 7.7E-09 46.8 2.9 24 38-61 77-103 (191)
22 4gfj_A Topoisomerase V; helix- 97.0 0.00038 1.3E-08 52.2 3.2 26 37-62 472-497 (685)
23 1cuk_A RUVA protein; DNA repai 97.0 0.0004 1.4E-08 45.9 2.7 24 38-61 78-104 (203)
24 2owo_A DNA ligase; protein-DNA 96.3 0.0025 8.5E-08 48.7 3.1 26 37-62 516-541 (671)
25 1vq8_Y 50S ribosomal protein L 96.2 0.00075 2.5E-08 45.8 0.0 28 34-61 16-44 (241)
26 3sgi_A DNA ligase; HET: DNA AM 96.2 0.0008 2.7E-08 51.0 0.0 27 36-62 532-558 (615)
27 1s5l_U Photosystem II 12 kDa e 96.1 0.0015 5.3E-08 41.3 1.0 27 35-61 65-93 (134)
28 3c1y_A DNA integrity scanning 95.9 0.0041 1.4E-07 44.8 2.7 26 37-62 319-344 (377)
29 1dgs_A DNA ligase; AMP complex 95.9 0.0042 1.4E-07 47.4 2.6 26 37-62 511-536 (667)
30 2i5h_A Hypothetical protein AF 95.8 0.018 6.1E-07 38.6 5.2 46 16-61 112-165 (205)
31 2w9m_A Polymerase X; SAXS, DNA 95.6 0.0071 2.4E-07 44.8 3.0 27 36-62 100-127 (578)
32 2ztd_A Holliday junction ATP-d 95.6 0.007 2.4E-07 40.4 2.5 18 38-55 93-110 (212)
33 3arc_U Photosystem II 12 kDa e 95.3 0.0043 1.5E-07 37.0 0.8 27 34-60 27-55 (97)
34 2duy_A Competence protein come 95.3 0.0075 2.6E-07 33.3 1.6 25 35-59 29-55 (75)
35 1ixr_A Holliday junction DNA h 95.2 0.016 5.6E-07 37.9 3.4 23 32-54 106-128 (191)
36 2bcq_A DNA polymerase lambda; 95.1 0.016 5.4E-07 40.6 3.3 27 36-62 99-126 (335)
37 2fmp_A DNA polymerase beta; nu 95.1 0.018 6.3E-07 40.2 3.5 28 35-62 100-128 (335)
38 2ziu_A MUS81 protein; helix-ha 94.9 0.017 6E-07 39.3 3.0 30 35-64 239-268 (311)
39 2ztd_A Holliday junction ATP-d 94.9 0.012 4.2E-07 39.2 2.1 37 17-55 109-145 (212)
40 3b0x_A DNA polymerase beta fam 94.8 0.018 6.2E-07 42.5 3.0 27 37-63 97-125 (575)
41 4glx_A DNA ligase; inhibitor, 94.8 0.02 6.9E-07 43.1 3.2 26 37-62 516-541 (586)
42 2ihm_A POL MU, DNA polymerase 94.6 0.026 9E-07 39.8 3.3 25 36-60 105-130 (360)
43 3maj_A DNA processing chain A; 94.6 0.048 1.6E-06 39.2 4.6 40 16-63 17-56 (382)
44 1jms_A Terminal deoxynucleotid 94.5 0.027 9.1E-07 40.1 3.2 25 37-61 125-150 (381)
45 1cuk_A RUVA protein; DNA repai 93.9 0.027 9.3E-07 37.1 2.1 34 18-53 95-128 (203)
46 1x2i_A HEF helicase/nuclease; 93.1 0.015 5.1E-07 31.4 -0.2 23 32-54 45-67 (75)
47 1kft_A UVRC, excinuclease ABC 92.4 0.026 8.8E-07 31.3 0.1 41 6-54 37-77 (78)
48 2edu_A Kinesin-like protein KI 92.3 0.079 2.7E-06 30.6 2.2 20 34-53 41-60 (98)
49 1z00_A DNA excision repair pro 92.3 0.033 1.1E-06 31.5 0.6 23 32-54 50-72 (89)
50 3b0x_A DNA polymerase beta fam 91.7 0.21 7E-06 36.8 4.3 41 11-56 111-151 (575)
51 3vdp_A Recombination protein R 91.2 0.088 3E-06 35.3 1.7 18 35-52 28-45 (212)
52 3c1y_A DNA integrity scanning 90.6 0.11 3.6E-06 37.5 1.8 39 6-52 328-366 (377)
53 2zix_A Crossover junction endo 90.4 0.024 8.3E-07 38.7 -1.6 31 34-64 234-264 (307)
54 2a1j_B DNA excision repair pro 90.2 0.053 1.8E-06 30.9 -0.0 23 32-54 63-85 (91)
55 2csb_A Topoisomerase V, TOP61; 90.1 0.26 9E-06 35.3 3.4 23 39-61 417-439 (519)
56 1vdd_A Recombination protein R 90.1 0.13 4.3E-06 34.9 1.7 18 35-52 14-31 (228)
57 3fhg_A Mjogg, N-glycosylase/DN 89.3 0.23 8E-06 32.2 2.5 20 35-54 119-138 (207)
58 3n0u_A Probable N-glycosylase/ 88.5 0.23 7.9E-06 32.9 2.1 19 37-55 134-152 (219)
59 1pu6_A 3-methyladenine DNA gly 87.8 0.26 9E-06 32.2 2.0 18 35-52 123-140 (218)
60 3fhf_A Mjogg, N-glycosylase/DN 87.4 0.34 1.2E-05 32.0 2.4 18 37-54 129-146 (214)
61 1ci4_A Protein (barrier-TO-aut 86.9 0.67 2.3E-05 27.3 3.2 30 27-58 14-44 (89)
62 1vq8_Y 50S ribosomal protein L 86.9 0.12 4.2E-06 34.8 0.0 36 21-56 36-71 (241)
63 1kea_A Possible G-T mismatches 86.6 0.34 1.2E-05 31.6 2.0 18 35-52 117-134 (221)
64 2w9m_A Polymerase X; SAXS, DNA 86.4 1.5 5E-05 32.4 5.5 33 14-51 117-149 (578)
65 2h56_A DNA-3-methyladenine gly 86.4 0.35 1.2E-05 31.9 2.0 19 37-55 142-161 (233)
66 1kg2_A A/G-specific adenine gl 86.3 0.36 1.2E-05 31.6 2.0 18 35-52 111-128 (225)
67 2bgw_A XPF endonuclease; hydro 86.2 0.099 3.4E-06 33.8 -0.7 23 32-54 193-215 (219)
68 4e9f_A Methyl-CPG-binding doma 85.5 0.5 1.7E-05 29.9 2.3 26 26-51 97-122 (161)
69 1orn_A Endonuclease III; DNA r 84.7 0.47 1.6E-05 31.2 2.0 18 35-52 115-132 (226)
70 2abk_A Endonuclease III; DNA-r 84.5 0.46 1.6E-05 30.7 1.9 18 35-52 111-128 (211)
71 4b21_A Probable DNA-3-methylad 84.4 0.5 1.7E-05 31.3 2.0 18 35-52 152-169 (232)
72 2yg9_A DNA-3-methyladenine gly 84.3 0.5 1.7E-05 31.0 2.0 18 35-52 148-165 (225)
73 3s6i_A DNA-3-methyladenine gly 84.3 0.5 1.7E-05 31.1 2.0 22 34-55 140-162 (228)
74 4glx_A DNA ligase; inhibitor, 84.1 0.5 1.7E-05 35.5 2.1 35 23-57 534-568 (586)
75 3i0w_A 8-oxoguanine-DNA-glycos 83.6 0.55 1.9E-05 32.0 2.0 21 35-55 213-234 (290)
76 1mpg_A ALKA, 3-methyladenine D 83.3 0.58 2E-05 31.5 2.0 18 35-52 209-226 (282)
77 3n5n_X A/G-specific adenine DN 82.5 1.3 4.5E-05 30.4 3.6 15 38-52 134-148 (287)
78 2jhn_A ALKA, 3-methyladenine D 82.5 0.65 2.2E-05 31.5 2.0 18 35-52 212-229 (295)
79 2dla_A 397AA long hypothetical 82.3 0.65 2.2E-05 31.2 1.9 21 44-64 10-30 (222)
80 3r8n_M 30S ribosomal protein S 79.4 1.2 4E-05 27.0 2.2 19 36-54 19-37 (114)
81 2xhi_A N-glycosylase/DNA lyase 78.4 1 3.6E-05 31.6 2.0 21 35-55 255-276 (360)
82 3fsp_A A/G-specific adenine gl 78.4 1.1 3.6E-05 31.2 2.0 18 35-52 120-137 (369)
83 2owo_A DNA ligase; protein-DNA 77.3 1 3.5E-05 34.4 1.8 34 24-57 535-568 (671)
84 1wcn_A Transcription elongatio 76.6 0.75 2.6E-05 25.4 0.7 29 33-61 7-36 (70)
85 2kp7_A Crossover junction endo 76.6 1.3 4.3E-05 25.5 1.7 17 36-52 61-77 (87)
86 2ziu_B Crossover junction endo 75.1 3.1 0.0001 29.0 3.6 29 36-64 258-286 (341)
87 3u5c_S 40S ribosomal protein S 74.7 1.8 6.1E-05 27.3 2.2 35 20-54 10-51 (146)
88 3bqs_A Uncharacterized protein 74.5 3.7 0.00013 23.8 3.4 27 34-60 5-32 (93)
89 2xzm_M RPS18E; ribosome, trans 74.3 1.8 6.3E-05 27.5 2.2 18 37-54 34-51 (155)
90 2rhf_A DNA helicase RECQ; HRDC 73.0 5.8 0.0002 21.5 3.9 41 8-49 17-63 (77)
91 3iz6_M 40S ribosomal protein S 71.6 2.3 7.9E-05 27.0 2.1 18 37-54 32-49 (152)
92 2bcq_A DNA polymerase lambda; 70.6 2.4 8E-05 29.5 2.2 17 35-51 59-75 (335)
93 3sgi_A DNA ligase; HET: DNA AM 69.8 0.94 3.2E-05 34.4 0.0 36 23-58 551-586 (615)
94 1dgs_A DNA ligase; AMP complex 69.6 4.4 0.00015 30.9 3.6 37 22-61 433-471 (667)
95 2e1f_A Werner syndrome ATP-dep 69.6 2.6 8.8E-05 24.7 1.9 44 8-53 27-76 (103)
96 1a4i_A Methylenetetrahydrofola 68.3 2 6.9E-05 29.8 1.5 19 34-52 267-286 (301)
97 2ihm_A POL MU, DNA polymerase 67.4 3 0.0001 29.2 2.2 24 35-58 63-88 (360)
98 2fmp_A DNA polymerase beta; nu 66.3 3.3 0.00011 28.7 2.2 17 35-51 59-75 (335)
99 2vqe_M 30S ribosomal protein S 66.1 1.5 5.2E-05 27.0 0.4 18 37-54 21-38 (126)
100 4ecq_A DNA polymerase ETA; tra 65.8 5.2 0.00018 28.4 3.2 34 16-54 241-274 (435)
101 3l07_A Bifunctional protein fo 65.5 2.8 9.5E-05 28.9 1.7 19 34-52 256-275 (285)
102 2di0_A Activating signal coint 64.1 10 0.00035 21.2 3.6 25 39-63 25-50 (71)
103 1jms_A Terminal deoxynucleotid 64.1 3.3 0.00011 29.3 1.9 23 35-57 82-106 (381)
104 3j20_O 30S ribosomal protein S 63.2 4.8 0.00017 25.4 2.4 18 37-54 27-44 (148)
105 2csb_A Topoisomerase V, TOP61; 61.8 7.6 0.00026 27.8 3.4 26 36-61 471-496 (519)
106 1wud_A ATP-dependent DNA helic 59.1 5.8 0.0002 22.3 2.0 41 8-49 25-71 (89)
107 3c65_A Uvrabc system protein C 55.8 2.4 8.3E-05 28.3 0.0 29 25-54 197-225 (226)
108 2aq4_A DNA repair protein REV1 55.5 11 0.00036 26.7 3.3 28 34-61 242-272 (434)
109 3ngx_A Bifunctional protein fo 55.3 7.7 0.00026 26.6 2.5 19 34-52 245-264 (276)
110 2zj8_A DNA helicase, putative 54.8 7.8 0.00027 28.5 2.6 28 34-61 647-675 (720)
111 2va8_A SSO2462, SKI2-type heli 52.9 10 0.00035 27.8 2.9 25 36-60 660-685 (715)
112 3mab_A Uncharacterized protein 52.2 8.7 0.0003 22.2 2.0 27 34-60 5-32 (93)
113 1b0a_A Protein (fold bifunctio 51.7 12 0.0004 25.8 2.9 19 34-52 255-274 (288)
114 3bzc_A TEX; helix-turn-helix, 51.3 6 0.0002 30.7 1.5 18 35-52 510-527 (785)
115 4a5o_A Bifunctional protein fo 50.3 7 0.00024 26.9 1.6 19 34-52 257-276 (286)
116 2kv2_A Bloom syndrome protein; 50.2 7.7 0.00026 21.5 1.6 40 8-48 19-64 (85)
117 3bq0_A POL IV, DBH, DNA polyme 48.2 21 0.0007 24.3 3.7 33 16-54 167-199 (354)
118 1gm5_A RECG; helicase, replica 47.8 11 0.00037 28.9 2.5 27 33-60 115-143 (780)
119 1jx4_A DNA polymerase IV (fami 45.9 20 0.00067 24.4 3.3 33 16-54 166-198 (352)
120 2i1q_A DNA repair and recombin 45.8 23 0.00079 23.2 3.6 28 34-61 4-32 (322)
121 1im4_A DBH; DNA polymerase PAL 45.5 12 0.0004 24.2 2.0 33 16-54 172-204 (221)
122 2c2x_A Methylenetetrahydrofola 45.4 9.5 0.00032 26.2 1.7 19 34-52 254-273 (281)
123 1wy3_A Villin; structural prot 45.4 19 0.00065 17.4 2.4 19 4-23 1-19 (35)
124 1t94_A Polymerase (DNA directe 45.2 11 0.00038 26.8 2.0 27 34-61 283-311 (459)
125 3psf_A Transcription elongatio 44.7 10 0.00034 30.4 1.9 19 33-51 717-735 (1030)
126 1b22_A DNA repair protein RAD5 44.1 9.6 0.00033 22.7 1.4 39 13-52 31-77 (114)
127 3lw7_A Adenylate kinase relate 44.0 17 0.0006 20.6 2.5 20 35-54 6-25 (179)
128 2p6r_A Afuhel308 helicase; pro 43.5 16 0.00055 26.8 2.7 25 37-61 636-661 (702)
129 3osn_A DNA polymerase IOTA; ho 43.5 12 0.00042 26.4 2.0 26 35-61 236-263 (420)
130 2xvc_A ESCRT-III, SSO0910; cel 43.0 27 0.00092 18.9 2.9 22 3-25 25-46 (59)
131 4a26_A Putative C-1-tetrahydro 42.5 13 0.00044 25.7 2.0 19 34-52 269-288 (300)
132 1und_A Advillin, P92; actin bi 42.0 23 0.00078 17.3 2.4 19 4-23 3-21 (37)
133 4gfj_A Topoisomerase V; helix- 42.0 5.2 0.00018 30.2 -0.1 35 29-63 618-652 (685)
134 3bbn_M Ribosomal protein S13; 41.3 1.6 5.3E-05 27.7 -2.6 32 24-55 46-84 (145)
135 2pjp_A Selenocysteine-specific 39.2 51 0.0017 18.9 4.1 31 9-53 74-104 (121)
136 2rrd_A BLM HRDC domain, HRDC d 38.9 14 0.00047 21.3 1.5 39 9-48 35-79 (101)
137 1pzn_A RAD51, DNA repair and r 38.8 23 0.00078 24.1 2.8 28 34-61 36-64 (349)
138 3hjn_A DTMP kinase, thymidylat 38.2 16 0.00056 22.7 1.9 19 35-53 5-23 (197)
139 3psi_A Transcription elongatio 38.1 14 0.00049 30.1 1.9 19 33-51 714-732 (1219)
140 1u9l_A Transcription elongatio 37.8 29 0.00097 18.9 2.6 23 38-60 11-34 (70)
141 4dez_A POL IV 1, DNA polymeras 37.7 14 0.00047 25.2 1.5 39 16-60 166-206 (356)
142 2dgz_A Werner syndrome protein 36.5 3.3 0.00011 24.7 -1.6 44 8-53 34-83 (113)
143 1z3e_B DNA-directed RNA polyme 35.1 10 0.00035 20.9 0.5 22 31-52 39-60 (73)
144 3keo_A Redox-sensing transcrip 34.8 59 0.002 21.1 4.2 36 2-43 31-66 (212)
145 4hlc_A DTMP kinase, thymidylat 33.2 22 0.00074 22.4 1.8 19 35-53 7-25 (205)
146 3f2b_A DNA-directed DNA polyme 31.8 31 0.0011 27.7 2.8 26 36-61 970-1000(1041)
147 3gfk_B DNA-directed RNA polyme 31.6 15 0.00052 20.7 0.8 26 27-52 42-67 (79)
148 3gqu_A NOP5P protein; RNA bind 31.4 32 0.0011 22.1 2.4 20 41-60 41-60 (169)
149 3mfi_A DNA polymerase ETA; DNA 31.2 22 0.00075 26.0 1.8 36 16-54 293-328 (520)
150 3gqc_A DNA repair protein REV1 30.4 43 0.0015 24.5 3.2 39 16-60 303-343 (504)
151 2ozb_B U4/U6 small nuclear rib 30.3 29 0.001 23.4 2.2 20 41-60 150-169 (260)
152 3dl0_A Adenylate kinase; phosp 29.2 30 0.001 21.0 1.9 20 35-54 5-25 (216)
153 1nks_A Adenylate kinase; therm 29.2 24 0.00082 20.6 1.4 18 35-52 6-23 (194)
154 3kb2_A SPBC2 prophage-derived 29.2 30 0.001 19.8 1.9 18 35-52 6-23 (173)
155 3fb4_A Adenylate kinase; psych 28.9 32 0.0011 20.8 2.0 20 35-54 5-25 (216)
156 3mn2_A Probable ARAC family tr 28.9 41 0.0014 18.4 2.4 14 8-22 90-103 (108)
157 3oou_A LIN2118 protein; protei 28.9 41 0.0014 18.4 2.4 16 7-23 90-105 (108)
158 1qzp_A Dematin; villin headpie 28.3 41 0.0014 18.3 2.2 19 4-23 34-52 (68)
159 2k9s_A Arabinose operon regula 28.2 43 0.0015 18.3 2.4 15 7-22 89-103 (107)
160 3im1_A Protein SNU246, PRE-mRN 28.2 50 0.0017 22.2 3.1 28 34-61 158-186 (328)
161 1kht_A Adenylate kinase; phosp 27.9 31 0.0011 20.1 1.8 18 35-52 8-25 (192)
162 2k6m_S Supervillin; SVHP, HP, 27.6 43 0.0015 18.2 2.2 18 4-22 33-50 (67)
163 3icx_A PRE mRNA splicing prote 27.5 39 0.0013 22.9 2.4 20 41-60 136-155 (255)
164 1y6u_A XIS, excisionase from t 27.3 39 0.0013 18.2 2.0 14 40-53 27-40 (70)
165 2jaq_A Deoxyguanosine kinase; 27.2 32 0.0011 20.2 1.8 18 35-52 5-22 (205)
166 3lsg_A Two-component response 27.1 39 0.0013 18.3 2.0 14 7-21 88-101 (103)
167 3pzp_A DNA polymerase kappa; D 26.9 26 0.00089 25.5 1.5 27 34-61 339-367 (517)
168 1b4u_A LIGA, LIGB, protocatech 26.9 55 0.0019 20.4 2.8 17 5-22 56-72 (139)
169 1yu8_X Villin; alpha helix, 3- 26.8 48 0.0017 18.1 2.3 18 4-22 33-50 (67)
170 1hmj_A RPB5, protein (subunit 26.6 14 0.00048 20.9 0.1 22 6-30 20-41 (78)
171 2y35_A LD22664P; hydrolase-DNA 26.3 43 0.0015 27.2 2.8 21 20-42 277-297 (1140)
172 1nt2_B Conserved hypothetical 26.2 43 0.0015 22.8 2.4 20 41-60 146-165 (258)
173 2cqq_A RSGI RUH-037, DNAJ homo 25.7 57 0.002 17.6 2.5 35 8-56 21-55 (72)
174 2nnw_A NOP5/NOP56 related prot 25.7 42 0.0014 23.9 2.4 21 41-61 270-290 (376)
175 2z0h_A DTMP kinase, thymidylat 25.6 37 0.0013 19.9 1.9 19 35-53 5-23 (197)
176 1zuh_A Shikimate kinase; alpha 25.3 38 0.0013 19.6 1.8 18 35-52 12-29 (168)
177 2pt5_A Shikimate kinase, SK; a 25.1 38 0.0013 19.4 1.8 18 35-52 5-22 (168)
178 2plr_A DTMP kinase, probable t 24.8 38 0.0013 20.0 1.8 18 35-52 9-26 (213)
179 3k4g_A DNA-directed RNA polyme 24.6 51 0.0017 18.7 2.2 20 33-52 44-63 (86)
180 4b4u_A Bifunctional protein fo 24.4 33 0.0011 23.8 1.6 18 35-52 275-293 (303)
181 1ly1_A Polynucleotide kinase; 24.3 52 0.0018 18.9 2.3 18 35-52 7-24 (181)
182 3oio_A Transcriptional regulat 24.3 51 0.0017 18.2 2.2 16 7-23 92-107 (113)
183 3thf_A Protein shroom; coiled- 24.2 73 0.0025 20.8 3.2 21 7-29 135-155 (190)
184 2jrt_A Uncharacterized protein 23.8 76 0.0026 18.0 2.9 24 4-28 50-73 (95)
185 3mkl_A HTH-type transcriptiona 23.5 58 0.002 18.2 2.4 16 7-23 91-106 (120)
186 1coo_A RNA polymerase alpha su 23.5 29 0.00099 20.3 1.0 26 27-52 50-75 (98)
187 2pbr_A DTMP kinase, thymidylat 23.4 43 0.0015 19.5 1.8 18 35-52 5-22 (195)
188 2rhm_A Putative kinase; P-loop 23.4 36 0.0012 19.9 1.5 18 35-52 10-27 (193)
189 1e6c_A Shikimate kinase; phosp 23.3 44 0.0015 19.2 1.8 18 35-52 7-24 (173)
190 4f92_B U5 small nuclear ribonu 23.3 63 0.0022 27.0 3.3 29 33-61 1557-1586(1724)
191 4f4y_A POL IV, DNA polymerase 23.1 23 0.00079 24.4 0.6 31 16-51 167-197 (362)
192 1qhx_A CPT, protein (chloramph 22.9 57 0.002 18.8 2.3 18 35-52 8-25 (178)
193 2zp2_A Kinase A inhibitor; KIP 22.7 76 0.0026 19.6 2.9 21 5-26 16-36 (141)
194 2v54_A DTMP kinase, thymidylat 22.3 46 0.0016 19.7 1.8 19 35-53 9-27 (204)
195 2c95_A Adenylate kinase 1; tra 22.0 39 0.0013 19.8 1.4 20 35-54 14-34 (196)
196 1bl0_A Protein (multiple antib 22.0 59 0.002 18.5 2.2 16 7-23 96-111 (129)
197 1b0n_B Protein (SINI protein); 22.0 98 0.0034 16.2 3.3 28 4-32 11-43 (57)
198 3fqd_A Protein DHP1, 5'-3' exo 21.9 68 0.0023 25.6 3.1 32 20-53 328-361 (899)
199 2cdn_A Adenylate kinase; phosp 21.7 47 0.0016 19.8 1.8 18 35-52 25-42 (201)
200 2km6_A Nacht, LRR and PYD doma 21.5 1.3E+02 0.0044 17.4 4.5 44 14-58 17-69 (106)
201 3iij_A Coilin-interacting nucl 20.8 67 0.0023 18.7 2.4 18 35-52 16-33 (180)
202 2ev1_A Hypothetical protein RV 20.8 1.1E+02 0.0039 20.1 3.6 26 3-29 77-103 (222)
203 2wwf_A Thymidilate kinase, put 20.7 44 0.0015 19.9 1.5 18 35-52 15-32 (212)
204 1qf9_A UMP/CMP kinase, protein 20.6 44 0.0015 19.4 1.5 20 35-54 11-31 (194)
205 2vt3_A REX, redox-sensing tran 20.5 1.6E+02 0.0056 18.7 4.3 45 2-53 32-76 (215)
206 2hnh_A DNA polymerase III alph 20.4 65 0.0022 25.3 2.7 28 35-62 835-868 (910)
207 1jr2_A Uroporphyrinogen-III sy 20.3 52 0.0018 21.3 1.9 16 38-54 117-132 (286)
208 3h5t_A Transcriptional regulat 20.2 1.5E+02 0.0051 19.2 4.2 39 3-52 9-47 (366)
209 4edh_A DTMP kinase, thymidylat 20.1 53 0.0018 20.7 1.9 19 35-53 11-29 (213)
210 3erv_A Putative C39-like pepti 20.1 1.7E+02 0.0058 19.2 4.4 56 7-64 56-140 (236)
211 3r0a_A Putative transcriptiona 20.1 1.2E+02 0.0042 17.1 3.4 28 1-29 9-37 (123)
No 1
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.90 E-value=1.2e-24 Score=151.84 Aligned_cols=64 Identities=28% Similarity=0.527 Sum_probs=60.8
Q ss_pred ceeCHHHHHHHhCCCCh-hHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCHHHHHhhhccC
Q 035374 2 ASFGMEDFARKYGELKP-SQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLVFNVECFSEM 66 (66)
Q Consensus 2 ~~~~~~~v~~~~g~i~p-~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~~~~~ 66 (66)
..++++.|.++|| ++| +||+|+++|+||+|||+|||||||||||.+||++|||+++++++++++
T Consensus 172 ~~~~~~~v~ek~G-v~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~ 236 (290)
T 1exn_A 172 REYHLRDMYEHHN-VDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLP 236 (290)
T ss_dssp EEECGGGHHHHHS-SSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCS
T ss_pred EEEcHHHHHHHcC-CCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHh
Confidence 3688999999998 999 999999999999999999999999999999999999999999988764
No 2
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.82 E-value=1.4e-20 Score=131.74 Aligned_cols=59 Identities=27% Similarity=0.502 Sum_probs=56.6
Q ss_pred eeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCHHHHHhhhc
Q 035374 3 SFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLVFNVECFS 64 (66)
Q Consensus 3 ~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~~~ 64 (66)
.|+.+.+.++|| ++|+||+|+++|+| |||+|||||||+|||.+||++|||+++++++++
T Consensus 208 ~~~~~~v~~~~g-l~~~q~id~~~L~G--sD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~ 266 (336)
T 1rxw_A 208 IIILESNLKRLG-LTREQLIDIAILVG--TDYNEGVKGVGVKKALNYIKTYGDIFRALKALK 266 (336)
T ss_dssp EEEHHHHHHHHT-CCHHHHHHHHHHHC--BTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT
T ss_pred EeEHHHHHHHcC-CCHHHHHHHHhhcC--CCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCC
Confidence 488999999998 99999999999999 799999999999999999999999999998875
No 3
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.80 E-value=6.5e-20 Score=129.01 Aligned_cols=60 Identities=32% Similarity=0.525 Sum_probs=49.6
Q ss_pred eeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCC-CCCCccHHHHHHHHHHhCCHHHHHhhhcc
Q 035374 3 SFGMEDFARKYGELKPSQFVDVISLVGDKADNIP-GVEGIGDVRAVQLITKFGMLVFNVECFSE 65 (66)
Q Consensus 3 ~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~-gi~GiG~K~A~~Ll~~fgsl~~i~~~~~~ 65 (66)
.|+.+++.++|| ++|+||+|+|+|+| +||+| ||||||+|||.+||++|||++++++++++
T Consensus 206 ~~~~~~v~~~~g-l~~~q~id~~~L~G--~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~~~ 266 (346)
T 2izo_A 206 LIETEILLKKLG-ITREQLIDIGILIG--TDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEI 266 (346)
T ss_dssp EEEHHHHHHHHT-CCHHHHHHHHHHHC--CSSSTTCSTTCCHHHHHHHHHHSSCC---------
T ss_pred EEEHHHHHHHcC-CCHHHHHHHHHHcC--CCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 488999999998 99999999999999 79999 99999999999999999999999988764
No 4
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.79 E-value=1.2e-19 Score=128.27 Aligned_cols=61 Identities=33% Similarity=0.496 Sum_probs=56.8
Q ss_pred ceeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCHHHHHhhhcc
Q 035374 2 ASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLVFNVECFSE 65 (66)
Q Consensus 2 ~~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~~~~ 65 (66)
..++.+++.++|| ++|+||+|+++|+| +|+.|||||||||||.+||++|||++++++++++
T Consensus 204 ~~~~~~~v~~~~g-l~~~q~id~~~L~G--~D~~~gipGiG~KtA~kll~~~gsle~i~~~~~~ 264 (341)
T 3q8k_A 204 QEFHLSRILQELG-LNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDP 264 (341)
T ss_dssp EEEEHHHHHHHHT-CCHHHHHHHHHHHC--CSSSCCCTTCCHHHHHHHHHHHCSHHHHHHHSCT
T ss_pred EEEcHHHHHHHhC-CCHHHHHHHHHhcC--CCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3588999999998 99999999999999 5888999999999999999999999999998764
No 5
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=99.79 E-value=5.8e-20 Score=130.85 Aligned_cols=59 Identities=25% Similarity=0.452 Sum_probs=56.6
Q ss_pred eeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCC-CCCCccHHHHHHHHHHhCCHHHHHhhhc
Q 035374 3 SFGMEDFARKYGELKPSQFVDVISLVGDKADNIP-GVEGIGDVRAVQLITKFGMLVFNVECFS 64 (66)
Q Consensus 3 ~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~-gi~GiG~K~A~~Ll~~fgsl~~i~~~~~ 64 (66)
.|+.+.+.++|| ++|+||+|+++|+| |||+| ||||||+|||.+||++|||+++++++++
T Consensus 223 ~~~~~~v~~~~g-l~~~q~id~~~L~G--sDy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~ 282 (363)
T 3ory_A 223 LIELDKLLVQLG-ITLENLIDIGILLG--TDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPIL 282 (363)
T ss_dssp EEEHHHHHHHHT-CCHHHHHHHHHHHC--BTTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGC
T ss_pred EEcHHHHHHHhC-cCHHHHHHHHHHhC--CCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhcc
Confidence 589999999998 99999999999999 79999 9999999999999999999999998876
No 6
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=99.78 E-value=1.7e-19 Score=126.31 Aligned_cols=60 Identities=22% Similarity=0.387 Sum_probs=56.9
Q ss_pred eeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCC-CCCCccHHHHHHHHHHhCCHHHHHhhhcc
Q 035374 3 SFGMEDFARKYGELKPSQFVDVISLVGDKADNIP-GVEGIGDVRAVQLITKFGMLVFNVECFSE 65 (66)
Q Consensus 3 ~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~-gi~GiG~K~A~~Ll~~fgsl~~i~~~~~~ 65 (66)
.|+.+.+.+++| ++|+||+|+++|+| +||+| ||||||+|||.+|+++|||+++++++.++
T Consensus 209 ~~~~~~v~~~~g-l~~~q~id~~~L~G--~Dy~p~gv~GiG~ktA~kli~~~gsle~il~~~~~ 269 (340)
T 1b43_A 209 LIILEEVLKELK-LTREKLIELAILVG--TDYNPGGIKGIGLKKALEIVRHSKDPLAKFQKQSD 269 (340)
T ss_dssp EEEHHHHHHHHT-CCHHHHHHHHHHHC--CTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGGGCS
T ss_pred EEEHHHHHHHhC-CCHHHHHHHHHhcC--CCCCCCCCCCccHHHHHHHHHHcCCHHHHHcCCCC
Confidence 489999999998 99999999999999 79999 99999999999999999999999988665
No 7
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.77 E-value=2e-21 Score=149.41 Aligned_cols=63 Identities=35% Similarity=0.625 Sum_probs=59.4
Q ss_pred eeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCHHHHHhhhccC
Q 035374 3 SFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLVFNVECFSEM 66 (66)
Q Consensus 3 ~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~~~~~ 66 (66)
.|+.++|.++|| ++|+||+|+++|+||+|||+|||||||||||.+||++|||+++++++++++
T Consensus 162 ~~~~~~v~~~~g-v~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~ 224 (832)
T 1bgx_T 162 LITPAWLWEKYG-LRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRL 224 (832)
T ss_dssp CBCSTTHHHHTC-CCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCC
T ss_pred EEcHHHHHHHHC-cCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHHHHHHHHHHh
Confidence 478899999998 999999999999999999999999999999999999999999999887753
No 8
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=99.77 E-value=5.2e-19 Score=123.31 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=56.3
Q ss_pred ceeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCC-CCCCccHHHHHHHHHHhCCHHHHH-hhhcc
Q 035374 2 ASFGMEDFARKYGELKPSQFVDVISLVGDKADNIP-GVEGIGDVRAVQLITKFGMLVFNV-ECFSE 65 (66)
Q Consensus 2 ~~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~-gi~GiG~K~A~~Ll~~fgsl~~i~-~~~~~ 65 (66)
..|+.+++.++|| ++|+||+|+++|+| +||+| ||||||||||.+|+++ ||+++++ +++++
T Consensus 196 ~~~~~~~v~~~~g-l~~~q~id~~~L~G--sD~~p~GvpGiG~ktA~kli~~-gsle~i~~~~~~~ 257 (326)
T 1a76_A 196 ELIELNEVLEDLR-ISLDDLIDIAIFMG--TDYNPGGVKGIGFKRAYELVRS-GVAKDVLKKEVEY 257 (326)
T ss_dssp EEEEHHHHHHHHT-CCHHHHHHHHHHHC--CTTSTTTTTTCCHHHHHHHHHH-TCHHHHHHHHSTT
T ss_pred EEEEHHHHHHHcC-CCHHHHHHHHHHcC--CCCCCCCCCCcCHHHHHHHHHc-CCHHHHHHHHHhH
Confidence 3689999999998 99999999999999 79999 9999999999999999 9999999 87753
No 9
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=99.72 E-value=8.1e-18 Score=119.73 Aligned_cols=60 Identities=33% Similarity=0.505 Sum_probs=54.5
Q ss_pred eeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCHHHHHhhhcc
Q 035374 3 SFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLVFNVECFSE 65 (66)
Q Consensus 3 ~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~~~~ 65 (66)
.|+.+++.++|| ++|+||+|+++|+| +|+.++|||||+|||.+||++|+|++++++++++
T Consensus 205 ~~~~~~v~~~~g-l~~~q~id~~~L~G--~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~ 264 (379)
T 1ul1_X 205 EFHLSRILQELG-LNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDP 264 (379)
T ss_dssp EEEHHHHHHHHT-CCHHHHHHHHHHHH--CSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCC
T ss_pred EEeHHHHHHHhC-CCHHHHHHHHHHhC--CCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 588999999998 99999999999999 3555667999999999999999999999998764
No 10
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=99.65 E-value=1.3e-16 Score=113.19 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=50.4
Q ss_pred eCHHHH--HHHhC-CCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHh--CCHHHHHhhhc
Q 035374 4 FGMEDF--ARKYG-ELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF--GMLVFNVECFS 64 (66)
Q Consensus 4 ~~~~~v--~~~~g-~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~f--gsl~~i~~~~~ 64 (66)
++.+.+ .+++| +++|+||+|+++|+| +||+|||||||+|||.+||++| +|+++++++++
T Consensus 195 ~~~~~~~~~~~~g~~l~~~q~id~~~L~G--~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~ 258 (352)
T 3qe9_Y 195 IDQARLGMCRQLGDVFTEEKFRYMCILSG--CDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIG 258 (352)
T ss_dssp EEGGGGTTCCTTCSSCCHHHHHHHHHHHC--CSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHH
T ss_pred EeHHHHHHHHHhCCCCCHHHHHHHHHhcC--CCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 444443 46664 389999999999999 7999999999999999999999 68999998764
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.35 E-value=4.2e-14 Score=99.62 Aligned_cols=38 Identities=26% Similarity=0.145 Sum_probs=34.8
Q ss_pred CHHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHH
Q 035374 5 GMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDV 44 (66)
Q Consensus 5 ~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K 44 (66)
+.+.|.++|| + |+|++|+++|+||+|||||||||||++
T Consensus 174 ~~~~V~ek~G-v-P~q~iD~~aL~GDsSDNIPGVpGIG~~ 211 (305)
T 3h7i_A 174 HKKWVKIKSG-S-AEIDCMTKILKGDKKDNVASVKVRSDF 211 (305)
T ss_dssp TTEEECSSCS-C-HHHHHHHHHHHCBGGGTBCCTTSCTTH
T ss_pred CHHHHHHHhC-C-HHHHhhHHheeCccccCCCCCCcCCcc
Confidence 3466788998 8 999999999999999999999999997
No 12
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=98.48 E-value=9.1e-08 Score=53.15 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=25.0
Q ss_pred CCCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 35 IPGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
+..|||||||++..||++|||++++.++
T Consensus 6 L~~IpGIG~kr~~~LL~~Fgs~~~i~~A 33 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMHHVKNIAELAAL 33 (63)
T ss_dssp HHTSTTCCHHHHHHHHHHCSSHHHHHTC
T ss_pred HHcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 4567999999999999999999999863
No 13
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=98.31 E-value=4.9e-07 Score=53.01 Aligned_cols=27 Identities=7% Similarity=0.039 Sum_probs=24.3
Q ss_pred CCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 36 PGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
..|||||||++..||++|+|+++|.++
T Consensus 21 ~~IpGIG~kr~~~LL~~FgSl~~i~~A 47 (84)
T 1z00_B 21 LKMPGVNAKNCRSLMHHVKNIAELAAL 47 (84)
T ss_dssp HTCSSCCHHHHHHHHHHSSCHHHHHHS
T ss_pred HhCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 357999999999999999999999864
No 14
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=98.06 E-value=1.6e-06 Score=49.07 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=26.2
Q ss_pred CCCCCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 33 DNIPGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 33 D~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
..+.+|||||+++|.+|+++|++++++.++
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 346689999999999999999999988764
No 15
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=98.00 E-value=4.6e-06 Score=46.01 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 36 PGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
.+|||||+++|.+|++.|+|++++.++
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~~l~~a 43 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVERVFTA 43 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 357999999999999999999998753
No 16
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=97.95 E-value=7.1e-06 Score=47.32 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.6
Q ss_pred CCCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 35 IPGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
+.+|||||+++|.+|++.|+|++++.++
T Consensus 21 L~~IpgIG~~~A~~Ll~~fgsl~~l~~a 48 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTTFGSLEQLIAA 48 (89)
T ss_dssp HTTSSSCCHHHHHHHHHHTCBHHHHHHC
T ss_pred HHcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 4567999999999999999999988753
No 17
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=97.91 E-value=5.3e-06 Score=56.06 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=25.2
Q ss_pred CCCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 35 IPGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
+.||||||+|+|.+|++.|||++++.++
T Consensus 170 LdgIpGIG~k~ak~Ll~~FgSl~~i~~A 197 (220)
T 2nrt_A 170 LDNVPGIGPIRKKKLIEHFGSLENIRSA 197 (220)
T ss_dssp HTTSTTCCHHHHHHHHHHHCSHHHHHTS
T ss_pred ccCCCCcCHHHHHHHHHHcCCHHHHHhC
Confidence 4678999999999999999999999864
No 18
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=97.90 E-value=8.6e-06 Score=47.29 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 35 IPGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
+.+|||||+++|.+|++.|+++++++++
T Consensus 34 L~~IpgIG~~~A~~Ll~~fgs~~~l~~a 61 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFGSLEQLIAA 61 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHSSHHHHHSC
T ss_pred HHcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 3467999999999999999999988753
No 19
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=97.57 E-value=1e-05 Score=54.75 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=0.0
Q ss_pred CCCCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 34 NIPGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
-+.+|||||+++|.+|++.|||++++.++
T Consensus 174 ~L~~IpGIG~k~ak~Ll~~FGSl~~i~~A 202 (226)
T 3c65_A 174 VLDDIPGVGEKRKKALLNYFGSVKKMKEA 202 (226)
T ss_dssp -----------------------------
T ss_pred cccccCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 46788999999999999999999998754
No 20
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=97.37 E-value=9.7e-05 Score=48.30 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.0
Q ss_pred CCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 36 PGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
.+|||||+++|..|+++|+|+++++++
T Consensus 165 ~~i~gVg~~~a~~Ll~~fgs~~~l~~a 191 (219)
T 2bgw_A 165 QSFPGIGRRTAERILERFGSLERFFTA 191 (219)
T ss_dssp HTSTTCCHHHHHHHHHHHSSHHHHTTC
T ss_pred hcCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 367999999999999999999998753
No 21
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=97.17 E-value=0.00023 Score=46.82 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCCccHHHHHHHHHHhCC---HHHHHh
Q 035374 38 VEGIGDVRAVQLITKFGM---LVFNVE 61 (66)
Q Consensus 38 i~GiG~K~A~~Ll~~fgs---l~~i~~ 61 (66)
|||||||+|.+||+.|++ .+.|.+
T Consensus 77 v~GIGpk~A~~iL~~f~~~~l~~aI~~ 103 (191)
T 1ixr_A 77 VSGVGPKVALALLSALPPRLLARALLE 103 (191)
T ss_dssp SSCCCHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHhCChHHHHHHHHh
Confidence 699999999999999998 555553
No 22
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=97.03 E-value=0.00038 Score=52.17 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=24.0
Q ss_pred CCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 37 GVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
.||||||++|..||++|||++.+..+
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~A 497 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVREA 497 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHHS
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHhC
Confidence 47999999999999999999999864
No 23
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=96.99 E-value=0.0004 Score=45.94 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=20.9
Q ss_pred CCCccHHHHHHHHHHhCC---HHHHHh
Q 035374 38 VEGIGDVRAVQLITKFGM---LVFNVE 61 (66)
Q Consensus 38 i~GiG~K~A~~Ll~~fgs---l~~i~~ 61 (66)
|+|||||+|.+||+.|++ .+.|.+
T Consensus 78 V~GIGpk~A~~iL~~f~~~~l~~aI~~ 104 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSAQQFVNAVER 104 (203)
T ss_dssp SSSCCHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHhhCChHHHHHHHHh
Confidence 699999999999999998 666653
No 24
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=96.27 E-value=0.0025 Score=48.66 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.8
Q ss_pred CCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 37 GVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
||||||+++|..|++.|+|++++.++
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl~~l~~A 541 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTLEALEAA 541 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHTC
T ss_pred cccCccHHHHHHHHHHcCCHHHHHhC
Confidence 67999999999999999999998754
No 25
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=96.23 E-value=0.00075 Score=45.81 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCCCCCccHHHHHHHHHH-hCCHHHHHh
Q 035374 34 NIPGVEGIGDVRAVQLITK-FGMLVFNVE 61 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~-fgsl~~i~~ 61 (66)
.+..|||||||+|.+|++. |+|++++.+
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~gf~sve~L~~ 44 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAGFESVEDVRG 44 (241)
T ss_dssp -----------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcCCCCHHHHHh
Confidence 5667899999999999998 999998863
No 26
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=96.19 E-value=0.0008 Score=50.99 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 36 PGVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
-||||||+++|..|++.|+|++++.++
T Consensus 532 LGIp~VG~~~ak~La~~Fgsle~L~~A 558 (615)
T 3sgi_A 532 LSIRHVGPTAARALATEFGSLDAIAAA 558 (615)
T ss_dssp ---------------------------
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 378999999999999999999998764
No 27
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=96.11 E-value=0.0015 Score=41.25 Aligned_cols=27 Identities=7% Similarity=0.050 Sum_probs=22.7
Q ss_pred CCCCCCccHHHHHHHHHH--hCCHHHHHh
Q 035374 35 IPGVEGIGDVRAVQLITK--FGMLVFNVE 61 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~--fgsl~~i~~ 61 (66)
+..+|||||++|.++++. |.|+|++++
T Consensus 65 L~~LpGiGp~~A~~II~~GpF~svedL~~ 93 (134)
T 1s5l_U 65 FIQYRGLYPTLAKLIVKNAPYESVEDVLN 93 (134)
T ss_dssp GGGSTTCTHHHHHHHHHTCCCSSGGGGGG
T ss_pred HHHCCCCCHHHHHHHHHcCCCCCHHHHHh
Confidence 456899999999999986 888888764
No 28
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=95.93 E-value=0.0041 Score=44.84 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=24.1
Q ss_pred CCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 37 GVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
.||+||++.|.+|+.+|||+++++++
T Consensus 319 ~IPrl~~~iae~Lv~~FGsLq~Il~A 344 (377)
T 3c1y_A 319 TVARIPLSIGYNVVRMFKTLDQISKA 344 (377)
T ss_dssp HTSCCCHHHHHHHHHHHCSHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 38999999999999999999999864
No 29
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.85 E-value=0.0042 Score=47.38 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=23.5
Q ss_pred CCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 37 GVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
||||||+++|..|++.|+|++++.++
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl~~l~~A 536 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTMDRLLEA 536 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBHHHHTTC
T ss_pred ccCCccHHHHHHHHHHcCCHHHHHhC
Confidence 67999999999999999999998653
No 30
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=95.79 E-value=0.018 Score=38.61 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=32.9
Q ss_pred CChhHHHHHHHhhCC---CCCCCCCCCCccHHHHHHHHHH-----hCCHHHHHh
Q 035374 16 LKPSQFVDVISLVGD---KADNIPGVEGIGDVRAVQLITK-----FGMLVFNVE 61 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd---~~D~i~gi~GiG~K~A~~Ll~~-----fgsl~~i~~ 61 (66)
-..++|++|..-.+. +..-+..+||||+++|.+++.. |.|++++.+
T Consensus 112 ~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~ 165 (205)
T 2i5h_A 112 QDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ 165 (205)
T ss_dssp TTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH
T ss_pred hchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 356777777554432 2345668999999999999975 889988854
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=95.63 E-value=0.0071 Score=44.76 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCCCCccHHHHHHHHHH-hCCHHHHHhh
Q 035374 36 PGVEGIGDVRAVQLITK-FGMLVFNVEC 62 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~-fgsl~~i~~~ 62 (66)
-+|+|||||+|.+|+++ |.|++++.++
T Consensus 100 ~~v~GVGpk~A~~i~~~G~~s~edL~~a 127 (578)
T 2w9m_A 100 LGVRGLGPKKIRSLWLAGIDSLERLREA 127 (578)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 46799999999999998 6799988765
No 32
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=95.56 E-value=0.007 Score=40.38 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=16.8
Q ss_pred CCCccHHHHHHHHHHhCC
Q 035374 38 VEGIGDVRAVQLITKFGM 55 (66)
Q Consensus 38 i~GiG~K~A~~Ll~~fgs 55 (66)
|+|||||+|..+|..|+.
T Consensus 93 v~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 93 VSGVGPRLAMAALAVHDA 110 (212)
T ss_dssp STTCCHHHHHHHHHHSCH
T ss_pred cCCcCHHHHHHHHHhCCH
Confidence 699999999999999976
No 33
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=95.35 E-value=0.0043 Score=36.96 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=21.2
Q ss_pred CCCCCCCccHHHHHHHHHH--hCCHHHHH
Q 035374 34 NIPGVEGIGDVRAVQLITK--FGMLVFNV 60 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~--fgsl~~i~ 60 (66)
-+..+||||+++|.++++. |.|++++.
T Consensus 27 eL~~lpGIG~~~A~~IV~~GpF~s~edL~ 55 (97)
T 3arc_U 27 AFIQYRGLYPTLAKLIVKNAPYESVEDVL 55 (97)
T ss_dssp GGGGSTTCTTHHHHHHHHHCCCSSGGGGG
T ss_pred HHhHCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 4567899999999999985 66777654
No 34
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=95.27 E-value=0.0075 Score=33.34 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=19.1
Q ss_pred CCCCCCccHHHHHHHHHHh--CCHHHH
Q 035374 35 IPGVEGIGDVRAVQLITKF--GMLVFN 59 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~f--gsl~~i 59 (66)
+..+||||+++|.++++.+ .+++++
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL 55 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDL 55 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGG
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHH
Confidence 3467999999999999974 455544
No 35
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=95.22 E-value=0.016 Score=37.87 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.0
Q ss_pred CCCCCCCCCccHHHHHHHHHHhC
Q 035374 32 ADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 32 ~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
.+.+..|||||+|+|.+++..+.
T Consensus 106 ~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 106 ARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH
Confidence 55778999999999999998874
No 36
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=95.13 E-value=0.016 Score=40.59 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=22.6
Q ss_pred CCCCCccHHHHHHHHHH-hCCHHHHHhh
Q 035374 36 PGVEGIGDVRAVQLITK-FGMLVFNVEC 62 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~-fgsl~~i~~~ 62 (66)
..|||||||+|.+|.++ +.|++++.++
T Consensus 99 ~~v~GiG~k~a~~l~~~Gi~tledL~~a 126 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQGFRSLEDIRSQ 126 (335)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 37899999999999988 4589888764
No 37
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=95.07 E-value=0.018 Score=40.21 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCCCCCccHHHHHHHHHH-hCCHHHHHhh
Q 035374 35 IPGVEGIGDVRAVQLITK-FGMLVFNVEC 62 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~-fgsl~~i~~~ 62 (66)
+-.|||||||+|.+|.++ +.|++++.++
T Consensus 100 l~~V~GiGpk~a~~l~~~Gi~tledL~~a 128 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVDEGIKTLEDLRKN 128 (335)
T ss_dssp HTTSTTCCHHHHHHHHHTTCCSHHHHHTC
T ss_pred HhCCCCCCHHHHHHHHHcCCCCHHHHHHh
Confidence 456799999999999998 4589988764
No 38
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=94.91 E-value=0.017 Score=39.32 Aligned_cols=30 Identities=7% Similarity=0.330 Sum_probs=26.3
Q ss_pred CCCCCCccHHHHHHHHHHhCCHHHHHhhhc
Q 035374 35 IPGVEGIGDVRAVQLITKFGMLVFNVECFS 64 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~fgsl~~i~~~~~ 64 (66)
+-.||||+++.|..++++|+|+..++++.+
T Consensus 239 L~~IpGVs~~~A~~I~~~ypTp~~L~~Ay~ 268 (311)
T 2ziu_A 239 LMQISGVSGDKAAAVLEHYSTVSSLLQAYD 268 (311)
T ss_dssp HTTBTTCCHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 456899999999999999999999887653
No 39
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=94.87 E-value=0.012 Score=39.17 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.8
Q ss_pred ChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCC
Q 035374 17 KPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGM 55 (66)
Q Consensus 17 ~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgs 55 (66)
+++.+.. .++-+| ...+..|||||+|+|.+++.++.+
T Consensus 109 ~~~~l~~-aI~~~d-~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 109 DAPALRQ-VLADGN-VAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp CHHHHHH-HHHTTC-HHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHH-HHHhCC-HHHHhhCCCCCHHHHHHHHHHHHH
Confidence 3555542 244555 446778999999999999988743
No 40
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=94.81 E-value=0.018 Score=42.46 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=22.6
Q ss_pred CCCCccHHHHHHHHHH--hCCHHHHHhhh
Q 035374 37 GVEGIGDVRAVQLITK--FGMLVFNVECF 63 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~--fgsl~~i~~~~ 63 (66)
+|+|||||+|.+++.+ +.|++++.++.
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~ 125 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAAL 125 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5699999999999997 57898887643
No 41
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=94.77 E-value=0.02 Score=43.07 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.5
Q ss_pred CCCCccHHHHHHHHHHhCCHHHHHhh
Q 035374 37 GVEGIGDVRAVQLITKFGMLVFNVEC 62 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fgsl~~i~~~ 62 (66)
|||+||+++|..|.+.|+|++++.++
T Consensus 516 GI~~vG~~~a~~La~~f~sl~~l~~a 541 (586)
T 4glx_A 516 GIREVGEATAAGLAAYFGTLEALEAA 541 (586)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred CCCchhHHHHHHHHHHcCCHHHHHcc
Confidence 67999999999999999999998753
No 42
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=94.57 E-value=0.026 Score=39.79 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=21.2
Q ss_pred CCCCCccHHHHHHHHHH-hCCHHHHH
Q 035374 36 PGVEGIGDVRAVQLITK-FGMLVFNV 60 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~-fgsl~~i~ 60 (66)
-.|||||||||.+|.++ +.|++++.
T Consensus 105 ~~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 105 TQVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred hCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 36799999999999988 44888876
No 43
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=94.56 E-value=0.048 Score=39.21 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=31.3
Q ss_pred CChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCHHHHHhhh
Q 035374 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLVFNVECF 63 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~~ 63 (66)
++.++...+..|.- +||+|+++..+|+++||+.+++++++
T Consensus 17 m~~~e~~~wL~L~~--------~~gvG~~~~~~Ll~~fgs~~~~~~a~ 56 (382)
T 3maj_A 17 LTEAQRIDWMRLIR--------AENVGPRTFRSLINHFGSARAALERL 56 (382)
T ss_dssp SCHHHHHHHHHHHT--------STTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--------CCCCCHHHHHHHHHHcCCHHHHHHcC
Confidence 45556666666643 48999999999999999999888653
No 44
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=94.51 E-value=0.027 Score=40.14 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.3
Q ss_pred CCCCccHHHHHHHHHH-hCCHHHHHh
Q 035374 37 GVEGIGDVRAVQLITK-FGMLVFNVE 61 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~-fgsl~~i~~ 61 (66)
.|||||||||.+|.++ +.|++++.+
T Consensus 125 ~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 6799999999999998 448888874
No 45
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=93.91 E-value=0.027 Score=37.07 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=23.9
Q ss_pred hhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHh
Q 035374 18 PSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 18 p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~f 53 (66)
++++. .++.-.+.+.+..|||||+|+|.+++.++
T Consensus 95 ~~~l~--~aI~~~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 95 AQQFV--NAVEREEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHHH--HHHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hHHHH--HHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 44444 23333335567889999999999999876
No 46
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=93.09 E-value=0.015 Score=31.44 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=18.9
Q ss_pred CCCCCCCCCccHHHHHHHHHHhC
Q 035374 32 ADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 32 ~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
.+.+..|||||+++|..+...|.
T Consensus 45 ~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 45 VAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHh
Confidence 44567789999999999988764
No 47
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=92.38 E-value=0.026 Score=31.33 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhC
Q 035374 6 MEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 6 ~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
...+.+.|+ +.+.+. -.+.+.+..|||||+++|..++..|.
T Consensus 37 A~~Ll~~fg--sl~~l~------~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 37 RQMLLKYMG--GLQGLR------NASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp HHHHHHHHS--CHHHHH------HCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHHHHHcC--CHHHHH------HCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 345566666 333322 22345567789999999999988764
No 48
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=92.35 E-value=0.079 Score=30.63 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=17.2
Q ss_pred CCCCCCCccHHHHHHHHHHh
Q 035374 34 NIPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~f 53 (66)
-+..|||||+++|.++++.+
T Consensus 41 ~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 41 DLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHH
Confidence 35678999999999999876
No 49
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=92.34 E-value=0.033 Score=31.53 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=18.7
Q ss_pred CCCCCCCCCccHHHHHHHHHHhC
Q 035374 32 ADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 32 ~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
.+.+..|||||+++|.+++..|.
T Consensus 50 ~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 50 REDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH
Confidence 34566789999999999998774
No 50
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=91.69 E-value=0.21 Score=36.81 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=26.9
Q ss_pred HHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCH
Q 035374 11 RKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56 (66)
Q Consensus 11 ~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl 56 (66)
..+|..+++++... +..|| +..+||||+|+|.+++......
T Consensus 111 ~~lg~~~~~~l~~a-~~~~~----l~~~~GiG~k~a~~i~~~l~~~ 151 (575)
T 3b0x_A 111 EGLGIDSLEKLKAA-LDRGD----LTRLKGFGPKRAERIREGLALA 151 (575)
T ss_dssp HTSCCCSHHHHHHH-HHHTG----GGGSTTCCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHH-HHcCC----cccCCCCCccHHHHHHHHHHHH
Confidence 33343577777643 23454 6789999999999996554433
No 51
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=91.17 E-value=0.088 Score=35.34 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.1
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+..+||||+|+|.++--.
T Consensus 28 l~~LPGIG~KsA~RlA~h 45 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLAFF 45 (212)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHH
Confidence 445799999999987543
No 52
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=90.58 E-value=0.11 Score=37.51 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHH
Q 035374 6 MEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 6 ~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~ 52 (66)
.++++++|| .++.++--+.+.+..|+|||+++|..+-+-
T Consensus 328 ae~Lv~~FG--------sLq~Il~AS~eEL~~VeGIGe~rAr~Ireg 366 (377)
T 3c1y_A 328 GYNVVRMFK--------TLDQISKASVEDLKKVEGIGEKRARAISES 366 (377)
T ss_dssp HHHHHHHHC--------SHHHHTTCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhC--------CHHHHHhCCHHHHHhccCccHHHHHHHHHH
Confidence 356667776 456667767778889999999999987543
No 53
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=90.40 E-value=0.024 Score=38.72 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=27.3
Q ss_pred CCCCCCCccHHHHHHHHHHhCCHHHHHhhhc
Q 035374 34 NIPGVEGIGDVRAVQLITKFGMLVFNVECFS 64 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~~~ 64 (66)
-+..||||++++|..++++|.|+..++++.+
T Consensus 234 ~L~~I~GVs~~~A~~I~~~ypTp~~L~~Ay~ 264 (307)
T 2zix_A 234 QLMQVRGVSGEKAAALVDRYSTPASLLAAYD 264 (307)
T ss_dssp TTTCSTTCCSTTTTTSSSSSCSHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 3668899999999999999999999887654
No 54
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=90.23 E-value=0.053 Score=30.91 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=18.8
Q ss_pred CCCCCCCCCccHHHHHHHHHHhC
Q 035374 32 ADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 32 ~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
.+.+..|||||+++|.+++..|.
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 44566789999999999988763
No 55
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=90.07 E-value=0.26 Score=35.35 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCccHHHHHHHHHHhCCHHHHHh
Q 035374 39 EGIGDVRAVQLITKFGMLVFNVE 61 (66)
Q Consensus 39 ~GiG~K~A~~Ll~~fgsl~~i~~ 61 (66)
.|+|.|||..||+.||+.+.+.+
T Consensus 417 egvgrktaerllrafgnpervkq 439 (519)
T 2csb_A 417 EGVGRKTAERLLRAFGNPERVKQ 439 (519)
T ss_dssp TTCCHHHHHHHHHHHSSHHHHHH
T ss_pred cccchhHHHHHHHHhCCHHHHHH
Confidence 79999999999999999998764
No 56
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=90.06 E-value=0.13 Score=34.95 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=14.0
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+..+||||+|+|.++--.
T Consensus 14 l~~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLAFH 31 (228)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHHHH
Confidence 345699999999988543
No 57
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=89.33 E-value=0.23 Score=32.18 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=16.1
Q ss_pred CCCCCCccHHHHHHHHHHhC
Q 035374 35 IPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~fg 54 (66)
+-.+||||+|||.-++..++
T Consensus 119 L~~lpGIG~kTA~~il~~~~ 138 (207)
T 3fhg_A 119 LLNIKGIGMQEASHFLRNVG 138 (207)
T ss_dssp HTTSTTCCHHHHHHHHHHTT
T ss_pred HHcCCCcCHHHHHHHHHHhC
Confidence 45789999999999887533
No 58
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=88.47 E-value=0.23 Score=32.87 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.1
Q ss_pred CCCCccHHHHHHHHHHhCC
Q 035374 37 GVEGIGDVRAVQLITKFGM 55 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fgs 55 (66)
.+||||+|||--+|..++-
T Consensus 134 ~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HSTTCCHHHHHHHHHTTTC
T ss_pred hCCCCCHHHHHHHHHHcCC
Confidence 7799999999998876654
No 59
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=87.82 E-value=0.26 Score=32.23 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=15.3
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++..
T Consensus 123 L~~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 123 LLDQKGIGKESADAILCY 140 (218)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HHcCCCcCHHHHHHHHHH
Confidence 567899999999988764
No 60
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=87.44 E-value=0.34 Score=31.98 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=15.0
Q ss_pred CCCCccHHHHHHHHHHhC
Q 035374 37 GVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fg 54 (66)
.+||||+|||--+|...+
T Consensus 129 ~LpGVG~KTA~~vL~~~g 146 (214)
T 3fhf_A 129 NIKGIGYKEASHFLRNVG 146 (214)
T ss_dssp HSTTCCHHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 679999999998887543
No 61
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=86.95 E-value=0.67 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=20.8
Q ss_pred hhCCCCCCCCCCCCccHHHHHHHHHH-hCCHHH
Q 035374 27 LVGDKADNIPGVEGIGDVRAVQLITK-FGMLVF 58 (66)
Q Consensus 27 L~Gd~~D~i~gi~GiG~K~A~~Ll~~-fgsl~~ 58 (66)
=+|+ ..+.-||||||+.+.+|-.+ |.....
T Consensus 14 Pmge--K~V~evpGIG~~~~~~L~~~Gf~kAy~ 44 (89)
T 1ci4_A 14 PMGE--KPVGSLAGIGEVLGKKLEERGFDKAYV 44 (89)
T ss_dssp CCTT--CCGGGSTTCCHHHHHHHHHTTCCSHHH
T ss_pred CCCC--CCcccCCCcCHHHHHHHHHcCccHHHH
Confidence 4565 44678999999999888765 333333
No 62
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=86.88 E-value=0.12 Score=34.82 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCH
Q 035374 21 FVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56 (66)
Q Consensus 21 ~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl 56 (66)
|-++..|...+.+.+-.+||||+|+|.+++..+..+
T Consensus 36 f~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~ 71 (241)
T 1vq8_Y 36 FESVEDVRGADQSALADVSGIGNALAARIKADVGGL 71 (241)
T ss_dssp ------------------------------------
T ss_pred CCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 334455555556778899999999999998877544
No 63
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=86.57 E-value=0.34 Score=31.64 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=14.7
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++..
T Consensus 117 L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 117 ILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHH
Confidence 346899999999988764
No 64
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=86.40 E-value=1.5 Score=32.37 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHH
Q 035374 14 GELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLIT 51 (66)
Q Consensus 14 g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~ 51 (66)
|..+++++.... -.| .+..+||||+|||.+++.
T Consensus 117 G~~s~edL~~a~-~~~----~L~~~~GiG~Ktaq~I~~ 149 (578)
T 2w9m_A 117 GIDSLERLREAA-ESG----ELAGLKGFGAKSAATILE 149 (578)
T ss_dssp TCCSHHHHHHHH-HHT----TTTTSTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHH-hhC----ccccCCCCCHHHHHHHHH
Confidence 435667666422 233 677889999999999943
No 65
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=86.37 E-value=0.35 Score=31.91 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.4
Q ss_pred CCCCccHHHHHHHHHH-hCC
Q 035374 37 GVEGIGDVRAVQLITK-FGM 55 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~-fgs 55 (66)
.+||||+|||.-++.. |+-
T Consensus 142 ~lpGIG~kTA~~ill~alg~ 161 (233)
T 2h56_A 142 AIKGIGQWTAEMFMMFSLGR 161 (233)
T ss_dssp TSTTCCHHHHHHHHHHTTCC
T ss_pred hCCCcCHHHHHHHHHHhCCC
Confidence 7899999999988765 443
No 66
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=86.34 E-value=0.36 Score=31.58 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=14.5
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++..
T Consensus 111 L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 111 VAALPGVGRSTAGAILSL 128 (225)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHH
Confidence 346899999999887764
No 67
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=86.25 E-value=0.099 Score=33.81 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=18.7
Q ss_pred CCCCCCCCCccHHHHHHHHHHhC
Q 035374 32 ADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 32 ~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
.+.+..+||||+++|.++...|.
T Consensus 193 ~e~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 193 KAEISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHHh
Confidence 34566789999999999988764
No 68
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=85.49 E-value=0.5 Score=29.91 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=20.3
Q ss_pred HhhCCCCCCCCCCCCccHHHHHHHHH
Q 035374 26 SLVGDKADNIPGVEGIGDVRAVQLIT 51 (66)
Q Consensus 26 ~L~Gd~~D~i~gi~GiG~K~A~~Ll~ 51 (66)
..+-+..+.+..+||||++||-.++-
T Consensus 97 ~~vp~~~~~L~~LpGVG~yTAdav~~ 122 (161)
T 4e9f_A 97 EYLTKQWKYPIELHGIGKYGNDSYRI 122 (161)
T ss_dssp HHHHSCCSSGGGSTTCCHHHHHHHHH
T ss_pred CcCCCChhhhhcCCCchHHHHHHHHH
Confidence 34556678889999999999977554
No 69
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=84.73 E-value=0.47 Score=31.15 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.9
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++..
T Consensus 115 L~~lpGIG~~TA~~il~~ 132 (226)
T 1orn_A 115 LMKLPGVGRKTANVVVSV 132 (226)
T ss_dssp HTTSTTCCHHHHHHHHHH
T ss_pred HHHCCCccHHHHHHHHHH
Confidence 457899999999888764
No 70
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=84.53 E-value=0.46 Score=30.67 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=14.5
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++..
T Consensus 111 L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 111 LEALPGVGRKTANVVLNT 128 (211)
T ss_dssp HHHSTTCCHHHHHHHHHH
T ss_pred HHhCCCCChHHHHHHHHH
Confidence 346899999999887764
No 71
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=84.35 E-value=0.5 Score=31.33 Aligned_cols=18 Identities=6% Similarity=0.049 Sum_probs=15.1
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++-.
T Consensus 152 L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 152 LSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp HTTSTTCCHHHHHHHHHH
T ss_pred HHhCCCcCHHHHHHHHHH
Confidence 567899999999987764
No 72
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=84.32 E-value=0.5 Score=31.04 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.7
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++-.
T Consensus 148 L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 148 LVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHH
Confidence 347899999999987764
No 73
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=84.31 E-value=0.5 Score=31.14 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.0
Q ss_pred CCCCCCCccHHHHHHHHHH-hCC
Q 035374 34 NIPGVEGIGDVRAVQLITK-FGM 55 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~-fgs 55 (66)
.+-.+||||++||.-++-. |+-
T Consensus 140 ~L~~l~GIG~~TA~~ill~~lg~ 162 (228)
T 3s6i_A 140 RLTQIKGIGRWTVEMLLIFSLNR 162 (228)
T ss_dssp HHTTSTTCCHHHHHHHHHHTSCC
T ss_pred HHHhCCCcCHHHHHHHHHHhCCC
Confidence 4568899999999987754 443
No 74
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=84.10 E-value=0.5 Score=35.53 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=27.0
Q ss_pred HHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCHH
Q 035374 23 DVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLV 57 (66)
Q Consensus 23 d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~ 57 (66)
++..|..-+.+.+..|+|||+++|..+..-|...+
T Consensus 534 sl~~l~~a~~e~l~~i~giG~~~A~si~~ff~~~~ 568 (586)
T 4glx_A 534 TLEALEAASIEELQKVPDVGIVVASHVHNFFAEES 568 (586)
T ss_dssp SHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSHH
T ss_pred CHHHHHccCHHHHhcCCCccHHHHHHHHHHHcCHH
Confidence 34455554556778899999999999999998754
No 75
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=83.63 E-value=0.55 Score=31.97 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=16.5
Q ss_pred CCCCCCccHHHHHHHHHH-hCC
Q 035374 35 IPGVEGIGDVRAVQLITK-FGM 55 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~-fgs 55 (66)
+..+||||||||.-++-. ++-
T Consensus 213 L~~lpGIG~~TA~~ill~~lg~ 234 (290)
T 3i0w_A 213 LKKFMGVGPQVADCIMLFSMQK 234 (290)
T ss_dssp HTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHhCCCcCHHHHHHHHHHhCCC
Confidence 557899999999987754 444
No 76
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=83.27 E-value=0.58 Score=31.48 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.9
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++..
T Consensus 209 L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 209 LQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HTTSTTCCHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHH
Confidence 458899999999887764
No 77
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=82.51 E-value=1.3 Score=30.43 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=13.1
Q ss_pred CCCccHHHHHHHHHH
Q 035374 38 VEGIGDVRAVQLITK 52 (66)
Q Consensus 38 i~GiG~K~A~~Ll~~ 52 (66)
+||||+|||.-++.-
T Consensus 134 LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 134 LPGVGRYTAGAIASI 148 (287)
T ss_dssp STTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 899999999987764
No 78
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=82.46 E-value=0.65 Score=31.53 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.0
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++..
T Consensus 212 L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 212 LTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHH
Confidence 447899999999988765
No 79
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=82.25 E-value=0.65 Score=31.18 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCHHHHHhhhc
Q 035374 44 VRAVQLITKFGMLVFNVECFS 64 (66)
Q Consensus 44 K~A~~Ll~~fgsl~~i~~~~~ 64 (66)
++|.+|++.|||+.++++.+.
T Consensus 10 ~~Ak~LlkeFG~in~fLe~IP 30 (222)
T 2dla_A 10 EKAKELLKGFGSINDFMDAIP 30 (222)
T ss_dssp HHHHHHTTTTSSHHHHHHHGG
T ss_pred HHHHHHHHHhccHHHHHHHcc
Confidence 689999999999999987653
No 80
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=79.38 E-value=1.2 Score=27.03 Aligned_cols=19 Identities=21% Similarity=0.557 Sum_probs=16.6
Q ss_pred CCCCCccHHHHHHHHHHhC
Q 035374 36 PGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~fg 54 (66)
..|.|||..+|..++++.+
T Consensus 19 t~I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 19 TSIYGVGKTRSKAILAAAG 37 (114)
T ss_dssp GGSTTCCHHHHHHHHHHTT
T ss_pred hhhcCcCHHHHHHHHHHcC
Confidence 3568999999999999975
No 81
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=78.38 E-value=1 Score=31.62 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=16.4
Q ss_pred CCCCCCccHHHHHHHHHH-hCC
Q 035374 35 IPGVEGIGDVRAVQLITK-FGM 55 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~-fgs 55 (66)
+-.+||||+|||.-++.. |+-
T Consensus 255 L~~LpGIGp~TA~~ill~alg~ 276 (360)
T 2xhi_A 255 LCILPGVGTCVADKICLMALDK 276 (360)
T ss_dssp HTTSTTCCHHHHHHHHHHHSCC
T ss_pred HHhCCCCCHHHHHHHHHHhCCC
Confidence 457899999999988765 443
No 82
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=78.37 E-value=1.1 Score=31.15 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=14.6
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-.+||||+|||.-++.-
T Consensus 120 L~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 120 FSRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHH
Confidence 447899999999887764
No 83
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=77.31 E-value=1 Score=34.40 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=26.6
Q ss_pred HHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCHH
Q 035374 24 VISLVGDKADNIPGVEGIGDVRAVQLITKFGMLV 57 (66)
Q Consensus 24 ~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~ 57 (66)
+..|.--+.+.+..|||||+++|..+..-|...+
T Consensus 535 l~~l~~As~eeL~~i~GIG~~~A~sI~~ff~~~~ 568 (671)
T 2owo_A 535 LEALEAASIEELQKVPDVGIVVASHVHNFFAEES 568 (671)
T ss_dssp HHHHHTCCHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence 4445555556778899999999999999998744
No 84
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=76.62 E-value=0.75 Score=25.36 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCCCCCCccHHHHHHHHHH-hCCHHHHHh
Q 035374 33 DNIPGVEGIGDVRAVQLITK-FGMLVFNVE 61 (66)
Q Consensus 33 D~i~gi~GiG~K~A~~Ll~~-fgsl~~i~~ 61 (66)
+.+..+|||++..+.+|-.. |.|++.+..
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~ 36 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARGVCTLEDLAE 36 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTTCCSHHHHHT
T ss_pred hHHHHcCCCCHHHHHHHHHcCCCcHHHHHc
Confidence 34456689999999888776 678887753
No 85
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=76.59 E-value=1.3 Score=25.52 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=13.4
Q ss_pred CCCCCccHHHHHHHHHH
Q 035374 36 PGVEGIGDVRAVQLITK 52 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~ 52 (66)
..++|||+|.+.+|=++
T Consensus 61 ~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 61 KILQHFGDRLCRMLDEK 77 (87)
T ss_dssp HTCTTTCHHHHHHHHHH
T ss_pred HHhhcccHHHHHHHHHH
Confidence 45799999999887544
No 86
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=75.07 E-value=3.1 Score=28.97 Aligned_cols=29 Identities=7% Similarity=0.126 Sum_probs=25.5
Q ss_pred CCCCCccHHHHHHHHHHhCCHHHHHhhhc
Q 035374 36 PGVEGIGDVRAVQLITKFGMLVFNVECFS 64 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~fgsl~~i~~~~~ 64 (66)
..||||.+-.|..+.++|.|+..++++.+
T Consensus 258 ~qi~gVS~ekA~aI~~~YPTp~~L~~Ay~ 286 (341)
T 2ziu_B 258 QQLNRVSLEMASAVVNAYPSPQLLVQAYQ 286 (341)
T ss_dssp TTSTTCCHHHHHHHHHHSCSHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 45799999999999999999999987654
No 87
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=74.71 E-value=1.8 Score=27.31 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=23.4
Q ss_pred HHHHHHHhhCCCCCC-------CCCCCCccHHHHHHHHHHhC
Q 035374 20 QFVDVISLVGDKADN-------IPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 20 q~~d~~~L~Gd~~D~-------i~gi~GiG~K~A~~Ll~~fg 54 (66)
+|-.+.-++|...|. +..|.|||..+|..++++.+
T Consensus 10 ~~~~~~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~g 51 (146)
T 3u5c_S 10 SFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKAD 51 (146)
T ss_dssp CCCSSBCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHT
T ss_pred HhhhhhhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcC
Confidence 344444456643332 23478999999999999875
No 88
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=74.55 E-value=3.7 Score=23.77 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=19.7
Q ss_pred CCCCCCCccHHHHHHHHHH-hCCHHHHH
Q 035374 34 NIPGVEGIGDVRAVQLITK-FGMLVFNV 60 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~-fgsl~~i~ 60 (66)
.+..+|+||++.+..|.+- ..|++++.
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~ 32 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELK 32 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 4667899999998888665 45676664
No 89
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=74.34 E-value=1.8 Score=27.50 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=16.1
Q ss_pred CCCCccHHHHHHHHHHhC
Q 035374 37 GVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fg 54 (66)
.|.|||..+|..++++.+
T Consensus 34 ~I~GIG~~~A~~I~~~~g 51 (155)
T 2xzm_M 34 GIRGIGRRFAYIICKVLK 51 (155)
T ss_dssp TSTTCCHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHHcC
Confidence 469999999999999975
No 90
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=73.04 E-value=5.8 Score=21.47 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=29.8
Q ss_pred HHHHHhCCCChh------HHHHHHHhhCCCCCCCCCCCCccHHHHHHH
Q 035374 8 DFARKYGELKPS------QFVDVISLVGDKADNIPGVEGIGDVRAVQL 49 (66)
Q Consensus 8 ~v~~~~g~i~p~------q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~L 49 (66)
.+.++.+ ++|. .+.+++...=.+.+.+..|+|||++...+.
T Consensus 17 ~~A~~~~-vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~y 63 (77)
T 2rhf_A 17 ELMKETG-YSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAY 63 (77)
T ss_dssp HHHHHHC-CCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHH
T ss_pred HHHHHcC-CCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHH
Confidence 4455665 6665 577888777776777888999999887653
No 91
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=71.56 E-value=2.3 Score=26.96 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=16.1
Q ss_pred CCCCccHHHHHHHHHHhC
Q 035374 37 GVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fg 54 (66)
.|.|||..+|..++++.+
T Consensus 32 ~I~GIG~~~A~~I~~~~g 49 (152)
T 3iz6_M 32 SIKGVGRRFSNIVCKKAD 49 (152)
T ss_dssp TSTTCCHHHHHHHHHHHT
T ss_pred hccCcCHHHHHHHHHHcC
Confidence 479999999999999875
No 92
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=70.58 E-value=2.4 Score=29.48 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=13.7
Q ss_pred CCCCCCccHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLIT 51 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~ 51 (66)
+..+||||+++|.++..
T Consensus 59 l~~lpGIG~~~A~kI~E 75 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIE 75 (335)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HhcCCCccHHHHHHHHH
Confidence 45789999999988744
No 93
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=69.77 E-value=0.94 Score=34.36 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCHHH
Q 035374 23 DVISLVGDKADNIPGVEGIGDVRAVQLITKFGMLVF 58 (66)
Q Consensus 23 d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~~ 58 (66)
++..|.--+.+.+..|||||+++|..+..-|...++
T Consensus 551 sle~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~~n 586 (615)
T 3sgi_A 551 SLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWH 586 (615)
T ss_dssp ------------------------------------
T ss_pred CHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCHHH
Confidence 444555545677889999999999999998877543
No 94
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=69.60 E-value=4.4 Score=30.94 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=25.3
Q ss_pred HHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhC--CHHHHHh
Q 035374 22 VDVISLVGDKADNIPGVEGIGDVRAVQLITKFG--MLVFNVE 61 (66)
Q Consensus 22 ~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg--sl~~i~~ 61 (66)
-.+..+++.. .-.|+|+|+|++.+|+.++. ++.+++.
T Consensus 433 ~~l~hf~sr~---aldI~GLG~k~i~~L~~~g~I~~~~DL~~ 471 (667)
T 1dgs_A 433 EAIRHYASRK---AMDIEGLGEKLIERLLEKGLVRDVADLYH 471 (667)
T ss_dssp HHHHHHHSTT---SSCCTTCCHHHHHHHHHTTSCSSGGGGGG
T ss_pred HHHHHHhccc---ccCcCcCCHHHHHHHHHcCCCCCHHHHHh
Confidence 3445566542 24569999999999999864 6666654
No 95
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=69.56 E-value=2.6 Score=24.70 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=32.1
Q ss_pred HHHHHhCCCChh------HHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHh
Q 035374 8 DFARKYGELKPS------QFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 8 ~v~~~~g~i~p~------q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~f 53 (66)
.+.++.+ ++|. .+.+++...=.+.+.+-.|+|||+....+. ..|
T Consensus 27 ~~A~~~~-vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~ 76 (103)
T 2e1f_A 27 KHANKMD-VPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APL 76 (103)
T ss_dssp HHHHHHT-SCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHH
T ss_pred HHHHHcC-CCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHH
Confidence 3445555 6654 588888887777777889999999988775 554
No 96
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=68.33 E-value=2 Score=29.84 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.2
Q ss_pred CCCCCC-CccHHHHHHHHHH
Q 035374 34 NIPGVE-GIGDVRAVQLITK 52 (66)
Q Consensus 34 ~i~gi~-GiG~K~A~~Ll~~ 52 (66)
.|..|| |+||.|...||++
T Consensus 267 ~iTPVPGGVGpmTiamLl~N 286 (301)
T 1a4i_A 267 FITPVPGGVGPMTVAMLMQS 286 (301)
T ss_dssp EECCSSSSHHHHHHHHHHHH
T ss_pred EeCCCCCCccHHHHHHHHHH
Confidence 556667 9999999999987
No 97
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=67.36 E-value=3 Score=29.19 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=17.1
Q ss_pred CCCCCCccHHHHHHHHHH--hCCHHH
Q 035374 35 IPGVEGIGDVRAVQLITK--FGMLVF 58 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~--fgsl~~ 58 (66)
+..+||||+++|.++..= -|+++.
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~ 88 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEE 88 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHH
Confidence 678999999999876432 355443
No 98
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=66.26 E-value=3.3 Score=28.71 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=13.7
Q ss_pred CCCCCCccHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLIT 51 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~ 51 (66)
+..+||||+++|.++..
T Consensus 59 l~~LpGIG~~~A~kI~E 75 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDE 75 (335)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHH
Confidence 46789999999987654
No 99
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=66.06 E-value=1.5 Score=27.00 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=16.0
Q ss_pred CCCCccHHHHHHHHHHhC
Q 035374 37 GVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fg 54 (66)
.|.|||..+|.+++++.+
T Consensus 21 ~I~GIG~~~A~~I~~~~g 38 (126)
T 2vqe_M 21 YIYGIGKARAKEALEKTG 38 (126)
T ss_dssp TSSSCCSHHHHHHTTTTT
T ss_pred ccccccHHHHHHHHHHcC
Confidence 469999999999999875
No 100
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=65.81 E-value=5.2 Score=28.42 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=23.3
Q ss_pred CChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhC
Q 035374 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
++|++..++..- --+..++|||++++.++|+++|
T Consensus 241 v~~~~~~~~L~~-----lpv~~l~GiG~~~~~~lL~~lG 274 (435)
T 4ecq_A 241 VSHGSVPQLFSQ-----MPIRKIRSLGGKLGASVIEILG 274 (435)
T ss_dssp CCGGGHHHHHHT-----CBGGGSTTCSSHHHHHHHHHHT
T ss_pred EehhHHHHHHhh-----CCHHHhcCCCHHHHHHHHHHcC
Confidence 455555544332 1355679999999999988876
No 101
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=65.47 E-value=2.8 Score=28.91 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.7
Q ss_pred CCCCCC-CccHHHHHHHHHH
Q 035374 34 NIPGVE-GIGDVRAVQLITK 52 (66)
Q Consensus 34 ~i~gi~-GiG~K~A~~Ll~~ 52 (66)
.|..+| |+||.|...||++
T Consensus 256 ~iTPVPGGVGpmT~a~Ll~n 275 (285)
T 3l07_A 256 AITPVPGGVGPMTITELLYN 275 (285)
T ss_dssp EECCSSSSSHHHHHHHHHHH
T ss_pred EeCCCCCcChHHHHHHHHHH
Confidence 456677 5999999999987
No 102
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=64.14 E-value=10 Score=21.20 Aligned_cols=25 Identities=4% Similarity=0.003 Sum_probs=21.6
Q ss_pred CCccHHHHHHHHHHhC-CHHHHHhhh
Q 035374 39 EGIGDVRAVQLITKFG-MLVFNVECF 63 (66)
Q Consensus 39 ~GiG~K~A~~Ll~~fg-sl~~i~~~~ 63 (66)
|-+|.--+.++|+.|+ ++|.+++++
T Consensus 25 PdLG~gfi~~~L~~y~~nvE~vin~L 50 (71)
T 2di0_A 25 PDLGEGFILACLEYYHYDPEQVINNI 50 (71)
T ss_dssp CSSCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 7789999999999995 799988764
No 103
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=64.10 E-value=3.3 Score=29.27 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=16.7
Q ss_pred CCCCCCccHHHHHHHHHH--hCCHH
Q 035374 35 IPGVEGIGDVRAVQLITK--FGMLV 57 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~--fgsl~ 57 (66)
+..+||||+++|.++-.= -|.+.
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~ 106 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESS 106 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcH
Confidence 678999999999876432 35544
No 104
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.21 E-value=4.8 Score=25.35 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.8
Q ss_pred CCCCccHHHHHHHHHHhC
Q 035374 37 GVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~fg 54 (66)
.|.|||..+|..++++.+
T Consensus 27 ~I~GIG~~~A~~I~~~~g 44 (148)
T 3j20_O 27 AIKGIGINFATMVCRVAG 44 (148)
T ss_dssp HSTTCCHHHHHHHHHHHT
T ss_pred hccCcCHHHHHHHHHHhC
Confidence 368999999999999874
No 105
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=61.84 E-value=7.6 Score=27.84 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCCCCccHHHHHHHHHHhCCHHHHHh
Q 035374 36 PGVEGIGDVRAVQLITKFGMLVFNVE 61 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~fgsl~~i~~ 61 (66)
-+|.||...+|..||++||...++..
T Consensus 471 isirgidreraerllkkyggyskvre 496 (519)
T 2csb_A 471 ISIRGIDRERAERLLKKYGGYSKVRE 496 (519)
T ss_dssp HTSTTCCHHHHHHHHHHHTSHHHHHT
T ss_pred eeeccccHHHHHHHHHHhCChhHHHH
Confidence 35789999999999999999887754
No 106
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=59.11 E-value=5.8 Score=22.27 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHhCCCChh------HHHHHHHhhCCCCCCCCCCCCccHHHHHHH
Q 035374 8 DFARKYGELKPS------QFVDVISLVGDKADNIPGVEGIGDVRAVQL 49 (66)
Q Consensus 8 ~v~~~~g~i~p~------q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~L 49 (66)
.+.++.+ ++|. .+.+++...-.+.+.+..|+|||++...+.
T Consensus 25 ~~A~~~~-vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~y 71 (89)
T 1wud_A 25 SIADESN-VPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERF 71 (89)
T ss_dssp HHHHHHT-SCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHcC-CCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHH
Confidence 4455565 6665 578888877776777788999999877553
No 107
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=55.77 E-value=2.4 Score=28.31 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHhhCCCCCCCCCCCCccHHHHHHHHHHhC
Q 035374 25 ISLVGDKADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 25 ~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
..+.--+.+.+..| |||+++|..+...|.
T Consensus 197 ~~i~~As~eeL~~V-GIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 197 KKMKEATVEELQRA-NIPRAVAEKIYEKLH 225 (226)
T ss_dssp ------------------------------
T ss_pred HHHHhCCHHHHHHc-CCCHHHHHHHHHHhh
Confidence 33444445678899 999999999977653
No 108
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=55.46 E-value=11 Score=26.69 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=21.5
Q ss_pred CCCCCCCccHHHHHHHHHHh---CCHHHHHh
Q 035374 34 NIPGVEGIGDVRAVQLITKF---GMLVFNVE 61 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~f---gsl~~i~~ 61 (66)
.+..++|||++++.+|-+.| .++.++.+
T Consensus 242 pv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~ 272 (434)
T 2aq4_A 242 KLDDLPGVGHSTLSRLESTFDSPHSLNDLRK 272 (434)
T ss_dssp CGGGSTTCCHHHHHHHHHHTTCCCSHHHHHH
T ss_pred CcccccCcCHHHHHHHHHhcCCceEHHHHHh
Confidence 45678999999999998855 46766654
No 109
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=55.34 E-value=7.7 Score=26.58 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=16.1
Q ss_pred CCCCCC-CccHHHHHHHHHH
Q 035374 34 NIPGVE-GIGDVRAVQLITK 52 (66)
Q Consensus 34 ~i~gi~-GiG~K~A~~Ll~~ 52 (66)
.|..|| |+||.|...||++
T Consensus 245 ~iTPVPGGVGpmT~a~Ll~n 264 (276)
T 3ngx_A 245 AITPVPGGVGPITATNILEN 264 (276)
T ss_dssp EECCTTTSSHHHHHHHHHHH
T ss_pred EeCCCCCcChHHHHHHHHHH
Confidence 456677 7999999999987
No 110
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=54.75 E-value=7.8 Score=28.51 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=23.9
Q ss_pred CCCCCCCccHHHHHHHHHH-hCCHHHHHh
Q 035374 34 NIPGVEGIGDVRAVQLITK-FGMLVFNVE 61 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~-fgsl~~i~~ 61 (66)
.+-.+||||..+|.+|.+. +.|++++.+
T Consensus 647 ~L~qlp~v~~~rar~L~~~G~~s~~dl~~ 675 (720)
T 2zj8_A 647 PLMQLPLVGRRRARALYNSGFRSIEDISQ 675 (720)
T ss_dssp GGTTSTTCCHHHHHHHHTTTCCSHHHHHT
T ss_pred hhhhCCCCCHHHHHHHHHcCCCCHHHHHh
Confidence 3458999999999999987 889998864
No 111
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=52.88 E-value=10 Score=27.76 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.3
Q ss_pred CCCCCccHHHHHHHHHH-hCCHHHHH
Q 035374 36 PGVEGIGDVRAVQLITK-FGMLVFNV 60 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~~-fgsl~~i~ 60 (66)
-.+||||+++|.+|.+. |.|++++.
T Consensus 660 ~qlp~i~~~rar~L~~~g~~s~~~l~ 685 (715)
T 2va8_A 660 VQISGVGRKRARLLYNNGIKELGDVV 685 (715)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred hhCCCCCHHHHHHHHHcCCCCHHHHh
Confidence 37899999999999987 57888875
No 112
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=52.20 E-value=8.7 Score=22.22 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=19.4
Q ss_pred CCCCCCCccHHHHHHHHHH-hCCHHHHH
Q 035374 34 NIPGVEGIGDVRAVQLITK-FGMLVFNV 60 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~-fgsl~~i~ 60 (66)
.+..+|+||++++..|-+- ..|++++.
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr 32 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELK 32 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 4567899999999888665 34566554
No 113
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=51.66 E-value=12 Score=25.84 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=16.4
Q ss_pred CCCCCC-CccHHHHHHHHHH
Q 035374 34 NIPGVE-GIGDVRAVQLITK 52 (66)
Q Consensus 34 ~i~gi~-GiG~K~A~~Ll~~ 52 (66)
.|..|| |+||.|...||++
T Consensus 255 ~iTPVPGGVGpmT~a~Ll~N 274 (288)
T 1b0a_A 255 YITPVPGGVGPMTVATLIEN 274 (288)
T ss_dssp EECCSSSSSHHHHHHHHHHH
T ss_pred EecCCCCCccHHHHHHHHHH
Confidence 567777 7999999999987
No 114
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=51.33 E-value=6 Score=30.74 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=14.4
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+..||||||+.|..+++-
T Consensus 510 L~~v~GiG~~~A~~Iv~y 527 (785)
T 3bzc_A 510 LARISGLNSTLAQNIVAH 527 (785)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhhcCCCCHHHHHHHHHH
Confidence 346799999999998864
No 115
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=50.32 E-value=7 Score=26.92 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCCCCC-CccHHHHHHHHHH
Q 035374 34 NIPGVE-GIGDVRAVQLITK 52 (66)
Q Consensus 34 ~i~gi~-GiG~K~A~~Ll~~ 52 (66)
.|..+| |+||.|...||++
T Consensus 257 ~iTPVPGGVGpmT~a~Ll~n 276 (286)
T 4a5o_A 257 WITPVPGGVGPMTRACLLEN 276 (286)
T ss_dssp EECCSSCSHHHHHHHHHHHH
T ss_pred EeCCCCCcchHHHHHHHHHH
Confidence 455677 6999999999987
No 116
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=50.17 E-value=7.7 Score=21.48 Aligned_cols=40 Identities=5% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHhCCCChh------HHHHHHHhhCCCCCCCCCCCCccHHHHHH
Q 035374 8 DFARKYGELKPS------QFVDVISLVGDKADNIPGVEGIGDVRAVQ 48 (66)
Q Consensus 8 ~v~~~~g~i~p~------q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~ 48 (66)
.+.++.+ ++|. .+.+++...-.+.+.+..|+|||++...+
T Consensus 19 ~~A~~~~-vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~ 64 (85)
T 2kv2_A 19 SLGKVFG-VHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEK 64 (85)
T ss_dssp HHHHHHT-SCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHH
T ss_pred HHHHHcC-CCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHH
Confidence 3445555 6654 67888887777777788899999975543
No 117
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=48.18 E-value=21 Score=24.27 Aligned_cols=33 Identities=30% Similarity=0.655 Sum_probs=21.5
Q ss_pred CChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhC
Q 035374 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
++|++..++..-+ -+..++|||++++.+| +++|
T Consensus 167 ~~~~~~~~~L~~l-----pv~~l~GiG~~~~~~L-~~~G 199 (354)
T 3bq0_A 167 IRPTEVQDFLNEL-----DIDEIPGIGSVLARRL-NELG 199 (354)
T ss_dssp CCGGGHHHHHHHC-----BSTTSTTCCHHHHHHH-TTTT
T ss_pred ECHHHHHHHHHhC-----CcccccCcCHHHHHHH-HHcC
Confidence 4566666554432 3566799999998876 5554
No 118
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=47.82 E-value=11 Score=28.91 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=18.1
Q ss_pred CCCCCCCCccHHHHHHHHHHhC--CHHHHH
Q 035374 33 DNIPGVEGIGDVRAVQLITKFG--MLVFNV 60 (66)
Q Consensus 33 D~i~gi~GiG~K~A~~Ll~~fg--sl~~i~ 60 (66)
+.+..++|||||+|..| ++.| ++.+++
T Consensus 115 ~~~~~l~gvg~~~~~~l-~~lgi~~~~dll 143 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKL-KKLGIETLRDLL 143 (780)
T ss_dssp CCSSSSSSCCHHHHHHH-HTTTCCSSGGGT
T ss_pred CCchhcCCCCHHHHHHH-HHCCCCcHHHHH
Confidence 35778899999998754 5554 444443
No 119
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=45.91 E-value=20 Score=24.37 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=21.5
Q ss_pred CChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhC
Q 035374 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
++|++..++..-+ .+..++|||++++.+| +++|
T Consensus 166 ~~~~~~~~~L~~l-----pv~~l~GiG~~~~~~L-~~~G 198 (352)
T 1jx4_A 166 IDDEEVKRLIREL-----DIADVPGIGNITAEKL-KKLG 198 (352)
T ss_dssp CCHHHHHHHHHHS-----BGGGSTTCCHHHHHHH-HTTT
T ss_pred ECHHHHHHHHHhC-----CCCcccccCHHHHHHH-HHcC
Confidence 4566655554422 3567799999998886 5554
No 120
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=45.79 E-value=23 Score=23.25 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=21.5
Q ss_pred CCCCCCCccHHHHHHHHHH-hCCHHHHHh
Q 035374 34 NIPGVEGIGDVRAVQLITK-FGMLVFNVE 61 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~-fgsl~~i~~ 61 (66)
.+..+|||++..+.+|-.. +.|++++..
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~ 32 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIAT 32 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHT
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 3455679999999999877 678888864
No 121
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=45.48 E-value=12 Score=24.22 Aligned_cols=33 Identities=30% Similarity=0.655 Sum_probs=21.0
Q ss_pred CChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhC
Q 035374 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
++|++..++..-+ -+..++|||++++.+| +++|
T Consensus 172 ~~~~~~~~~L~~l-----pv~~l~giG~~~~~~L-~~~G 204 (221)
T 1im4_A 172 IRPTEVQDFLNEL-----DIDEIPGIGSVLARRL-NELG 204 (221)
T ss_dssp CCGGGHHHHHHTC-----BGGGSTTCCHHHHHHH-HHTT
T ss_pred ECHHHHHHHHHhC-----CcccccCCCHHHHHHH-HHcC
Confidence 4556555443322 3567799999998886 5654
No 122
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=45.36 E-value=9.5 Score=26.19 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.3
Q ss_pred CCCCCC-CccHHHHHHHHHH
Q 035374 34 NIPGVE-GIGDVRAVQLITK 52 (66)
Q Consensus 34 ~i~gi~-GiG~K~A~~Ll~~ 52 (66)
.|..|| |+||.|...||++
T Consensus 254 ~iTPVPGGVGpmT~a~Ll~n 273 (281)
T 2c2x_A 254 HVSPNPGGVGPLTRAFLLTN 273 (281)
T ss_dssp EEECSSSSSHHHHHHHHHHH
T ss_pred eecCCCCCccHHHHHHHHHH
Confidence 344555 8999999999987
No 123
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=45.35 E-value=19 Score=17.35 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=15.4
Q ss_pred eCHHHHHHHhCCCChhHHHH
Q 035374 4 FGMEDFARKYGELKPSQFVD 23 (66)
Q Consensus 4 ~~~~~v~~~~g~i~p~q~~d 23 (66)
++.+++.+-|| +++++|-.
T Consensus 1 Lsd~dF~~vFg-msr~eF~~ 19 (35)
T 1wy3_A 1 LSDEDFKAVFG-MTRSAFAN 19 (35)
T ss_dssp CCHHHHHHHHS-SCHHHHHH
T ss_pred CCHHHHHHHHC-CCHHHHHH
Confidence 35789999998 99998754
No 124
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=45.15 E-value=11 Score=26.76 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=19.1
Q ss_pred CCCCCCCccHHHHHHHHHHhC--CHHHHHh
Q 035374 34 NIPGVEGIGDVRAVQLITKFG--MLVFNVE 61 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~fg--sl~~i~~ 61 (66)
.+..++|||++++.+| +++| ++.++.+
T Consensus 283 pv~~l~GiG~~~~~~L-~~lGI~T~gdL~~ 311 (459)
T 1t94_A 283 PIRKVSGIGKVTEKML-KALGIITCTELYQ 311 (459)
T ss_dssp BGGGCTTSCHHHHHHH-HHTTCCBHHHHHH
T ss_pred CHHhcCCcCHHHHHHH-HHcCCCcHHHHHh
Confidence 3668899999988765 7775 4555543
No 125
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=44.66 E-value=10 Score=30.43 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=15.9
Q ss_pred CCCCCCCCccHHHHHHHHH
Q 035374 33 DNIPGVEGIGDVRAVQLIT 51 (66)
Q Consensus 33 D~i~gi~GiG~K~A~~Ll~ 51 (66)
.-+.-|+||||++|..|++
T Consensus 717 ~lL~~v~GlGp~kA~~Iv~ 735 (1030)
T 3psf_A 717 SALKYISGFGKRKAIDFLQ 735 (1030)
T ss_dssp TTGGGSTTCCHHHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHH
Confidence 3456789999999999986
No 126
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=44.13 E-value=9.6 Score=22.73 Aligned_cols=39 Identities=10% Similarity=0.325 Sum_probs=23.7
Q ss_pred hCCCChhHHHHHHH--------hhCCCCCCCCCCCCccHHHHHHHHHH
Q 035374 13 YGELKPSQFVDVIS--------LVGDKADNIPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 13 ~g~i~p~q~~d~~~--------L~Gd~~D~i~gi~GiG~K~A~~Ll~~ 52 (66)
.| +.|...--+.. +...+-..+-.|+||++.+|.+++..
T Consensus 31 ~G-Ig~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~a 77 (114)
T 1b22_A 31 CG-INANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAE 77 (114)
T ss_dssp TT-CSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHH
T ss_pred cC-CCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHH
Confidence 35 77765544433 22222223345799999999999875
No 127
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=44.03 E-value=17 Score=20.58 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.5
Q ss_pred CCCCCCccHHHHHHHHHHhC
Q 035374 35 IPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~fg 54 (66)
+-|.||-|.-|..+.|+++|
T Consensus 6 l~G~~GsGKsT~a~~L~~~g 25 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLLKERG 25 (179)
T ss_dssp EECCTTSCHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHCC
Confidence 45789999999999996665
No 128
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=43.51 E-value=16 Score=26.76 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=21.7
Q ss_pred CCCCccHHHHHHHHHH-hCCHHHHHh
Q 035374 37 GVEGIGDVRAVQLITK-FGMLVFNVE 61 (66)
Q Consensus 37 gi~GiG~K~A~~Ll~~-fgsl~~i~~ 61 (66)
.+||||+.+|.+|-+. +.|++++.+
T Consensus 636 qlp~v~~~~ar~l~~~g~~s~~~l~~ 661 (702)
T 2p6r_A 636 RIRHIGRVRARKLYNAGIRNAEDIVR 661 (702)
T ss_dssp TSTTCCHHHHHHHHTTTCCSHHHHHH
T ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHh
Confidence 7899999999999876 788888864
No 129
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=43.47 E-value=12 Score=26.42 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=18.9
Q ss_pred CCCCCCccHHHHHHHHHHhC--CHHHHHh
Q 035374 35 IPGVEGIGDVRAVQLITKFG--MLVFNVE 61 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~fg--sl~~i~~ 61 (66)
+..++|||++++.+| +++| ++.++.+
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~ 263 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQT 263 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhh
Confidence 556799999999887 5565 5666543
No 130
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=42.99 E-value=27 Score=18.90 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=18.1
Q ss_pred eeCHHHHHHHhCCCChhHHHHHH
Q 035374 3 SFGMEDFARKYGELKPSQFVDVI 25 (66)
Q Consensus 3 ~~~~~~v~~~~g~i~p~q~~d~~ 25 (66)
.++.+.|.++|| ++++...+..
T Consensus 25 ildI~~~a~kyg-V~kdeV~~~L 46 (59)
T 2xvc_A 25 FLDIEHFSKVYG-VEKQEVVKLL 46 (59)
T ss_dssp EEEHHHHHHHHC-CCHHHHHHHH
T ss_pred EEeHHHHHHHhC-CCHHHHHHHH
Confidence 467889999998 9999887654
No 131
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=42.53 E-value=13 Score=25.72 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=15.8
Q ss_pred CCCCCC-CccHHHHHHHHHH
Q 035374 34 NIPGVE-GIGDVRAVQLITK 52 (66)
Q Consensus 34 ~i~gi~-GiG~K~A~~Ll~~ 52 (66)
.|..|| |+||.|...||++
T Consensus 269 ~iTPVPGGVGpmT~a~Ll~N 288 (300)
T 4a26_A 269 WISPVPGGVGPMTIAMLLEN 288 (300)
T ss_dssp EEECTTTSSSHHHHHHHHHH
T ss_pred EeCCCCCcChHHHHHHHHHH
Confidence 455567 7999999999987
No 132
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=42.03 E-value=23 Score=17.25 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=16.0
Q ss_pred eCHHHHHHHhCCCChhHHHH
Q 035374 4 FGMEDFARKYGELKPSQFVD 23 (66)
Q Consensus 4 ~~~~~v~~~~g~i~p~q~~d 23 (66)
++.+++.+-|| +++++|-.
T Consensus 3 Lsd~dF~~vFg-msr~eF~~ 21 (37)
T 1und_A 3 LSEQDFVSVFG-ITRGQFAA 21 (37)
T ss_dssp CCHHHHHHHHS-SCHHHHHH
T ss_pred CCHHHHHHHHC-cCHHHHHH
Confidence 57889999998 99998754
No 133
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=42.01 E-value=5.2 Score=30.21 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCccHHHHHHHHHHhCCHHHHHhhh
Q 035374 29 GDKADNIPGVEGIGDVRAVQLITKFGMLVFNVECF 63 (66)
Q Consensus 29 Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl~~i~~~~ 63 (66)
|-.+..+-.|+|+||+.|..++...++....+.++
T Consensus 618 ~p~~k~ll~~~gv~p~la~r~~e~~~~~~~~l~~~ 652 (685)
T 4gfj_A 618 GPEFKFLLNIEGVGPKLAERILEAVDYDLERLASL 652 (685)
T ss_dssp -----------------------------------
T ss_pred ChhHHHhhcccCCCHHHHHHHHHHhCCcHHHHhhC
Confidence 43444555679999999999999988876666543
No 134
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=41.33 E-value=1.6 Score=27.70 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=22.3
Q ss_pred HHHhhCCCCCC-------CCCCCCccHHHHHHHHHHhCC
Q 035374 24 VISLVGDKADN-------IPGVEGIGDVRAVQLITKFGM 55 (66)
Q Consensus 24 ~~~L~Gd~~D~-------i~gi~GiG~K~A~~Ll~~fgs 55 (66)
+.-+.|...++ +..|.|||..+|.+++++.+=
T Consensus 46 m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~gI 84 (145)
T 3bbn_M 46 CIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNF 84 (145)
T ss_dssp -CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGGGTTTTC
T ss_pred eeeEeCcccCCCCEEEEeeeeecCccHHHHHHHHHHcCC
Confidence 44477754442 235789999999999998753
No 135
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=39.20 E-value=51 Score=18.89 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=22.4
Q ss_pred HHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHh
Q 035374 9 FARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 9 v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~f 53 (66)
+.++.+.+|..+|.|.. |++.|-|..||..|
T Consensus 74 ~~~~~~~it~ae~Rd~l--------------g~sRK~ai~lLE~~ 104 (121)
T 2pjp_A 74 LDQECGSTCAADFRDRL--------------GVGRKLAIQILEYF 104 (121)
T ss_dssp HHHHHSSEEHHHHHHHH--------------TSCHHHHHHHHHHH
T ss_pred HHHHCCCccHHHHHHHH--------------CCcHHHHHHHHHHH
Confidence 33445667888887765 57888888888776
No 136
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=38.94 E-value=14 Score=21.34 Aligned_cols=39 Identities=5% Similarity=0.261 Sum_probs=28.0
Q ss_pred HHHHhCCCChh------HHHHHHHhhCCCCCCCCCCCCccHHHHHH
Q 035374 9 FARKYGELKPS------QFVDVISLVGDKADNIPGVEGIGDVRAVQ 48 (66)
Q Consensus 9 v~~~~g~i~p~------q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~ 48 (66)
+.++.+ ++|. .+.+++...-.+.+.+-.|+|||+....+
T Consensus 35 ~A~~~~-vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~ 79 (101)
T 2rrd_A 35 LGKVFG-VHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEK 79 (101)
T ss_dssp HHHHTT-CCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHH
T ss_pred HHHHcC-CCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHH
Confidence 344444 5554 68888888777777788899999987653
No 137
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=38.83 E-value=23 Score=24.09 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCCCCCCccHHHHHHHHHH-hCCHHHHHh
Q 035374 34 NIPGVEGIGDVRAVQLITK-FGMLVFNVE 61 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~-fgsl~~i~~ 61 (66)
.+..+|||++..+.+|-+. |.|++.+..
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~ 64 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAV 64 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHT
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 3667899999999999877 778888763
No 138
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=38.18 E-value=16 Score=22.71 Aligned_cols=19 Identities=26% Similarity=0.758 Sum_probs=16.6
Q ss_pred CCCCCCccHHHHHHHHHHh
Q 035374 35 IPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~f 53 (66)
+.|+.|-|.-|-.++|+++
T Consensus 5 ~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 5 FEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998874
No 139
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=38.06 E-value=14 Score=30.06 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=15.8
Q ss_pred CCCCCCCCccHHHHHHHHH
Q 035374 33 DNIPGVEGIGDVRAVQLIT 51 (66)
Q Consensus 33 D~i~gi~GiG~K~A~~Ll~ 51 (66)
.-+.-|+|+||++|..|++
T Consensus 714 ~lL~~v~GlGp~kA~~Iv~ 732 (1219)
T 3psi_A 714 SALKYISGFGKRKAIDFLQ 732 (1219)
T ss_dssp TTGGGSTTCCHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH
Confidence 3456789999999999975
No 140
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=37.79 E-value=29 Score=18.86 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=19.7
Q ss_pred CCCccHHHHHHHHHH-hCCHHHHH
Q 035374 38 VEGIGDVRAVQLITK-FGMLVFNV 60 (66)
Q Consensus 38 i~GiG~K~A~~Ll~~-fgsl~~i~ 60 (66)
..||++..+.+|... |.|++.+.
T Consensus 11 ~lgI~e~~a~~L~~~Gf~tve~vA 34 (70)
T 1u9l_A 11 YLDIDEDFATVLVEEGFSTLEELA 34 (70)
T ss_dssp HHTCCHHHHHHHHHTTCCCHHHHH
T ss_pred hCCCCHHHHHHHHHcCcCcHHHHH
Confidence 368999999999988 88999875
No 141
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=37.68 E-value=14 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=24.3
Q ss_pred CChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhC--CHHHHH
Q 035374 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG--MLVFNV 60 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg--sl~~i~ 60 (66)
++|++..++.. . --+..++|||++++.+| +++| ++.++.
T Consensus 166 i~~~~~~~~L~--~---lpv~~l~GiG~~~~~~L-~~~GI~Ti~dL~ 206 (356)
T 4dez_A 166 LTEANWMTVMG--D---RPPDALWGVGPKTTKKL-AAMGITTVADLA 206 (356)
T ss_dssp CCTTTHHHHHT--T---SCGGGSTTCCHHHHHHH-HHTTCCSHHHHH
T ss_pred ccchhhhhhhh--c---CcHHHHcCCchhHHHHH-HHcCCCeecccc
Confidence 45666554422 2 23557899999999876 5554 555554
No 142
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=36.47 E-value=3.3 Score=24.71 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=30.3
Q ss_pred HHHHHhCCCChh------HHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHh
Q 035374 8 DFARKYGELKPS------QFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 8 ~v~~~~g~i~p~------q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~f 53 (66)
.+.++.+ ++|. .+.+++...=.+.+.+-.|+|||++...+. ..|
T Consensus 34 ~~A~~~~-vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~ 83 (113)
T 2dgz_A 34 KHANKMD-VPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APL 83 (113)
T ss_dssp HHHHHTT-CCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHH
T ss_pred HHHHHhC-CCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHH
Confidence 3445555 6654 577888877766667778899999877655 444
No 143
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=35.05 E-value=10 Score=20.94 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=16.7
Q ss_pred CCCCCCCCCCccHHHHHHHHHH
Q 035374 31 KADNIPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 31 ~~D~i~gi~GiG~K~A~~Ll~~ 52 (66)
+.+.+-.++|+|+|+..++...
T Consensus 39 s~~dLlki~n~G~kSl~EI~~~ 60 (73)
T 1z3e_B 39 TEEDMMKVRNLGRKSLEEVKAK 60 (73)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHH
T ss_pred CHHHHHHcCCCCHHHHHHHHHH
Confidence 3455678899999998877654
No 144
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=34.77 E-value=59 Score=21.07 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=29.1
Q ss_pred ceeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccH
Q 035374 2 ASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGD 43 (66)
Q Consensus 2 ~~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~ 43 (66)
..++.+++.+..| ++|.|+..-....|. -|-+|+|=
T Consensus 31 ~~isS~ela~~~g-v~~~qiRkDls~fg~-----~G~~g~GY 66 (212)
T 3keo_A 31 EKASSKQIADALG-IDSATVRRDFSYFGE-----LGRRGFGY 66 (212)
T ss_dssp CEECHHHHHHHHT-SCHHHHHHHHHTTGG-----GTTTSSSE
T ss_pred eEECHHHHHHHHC-CCHHHHHHHHHHHhh-----cCCCCCCE
Confidence 3567889999998 999999988888884 36678774
No 145
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=33.16 E-value=22 Score=22.37 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=16.5
Q ss_pred CCCCCCccHHHHHHHHHHh
Q 035374 35 IPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~f 53 (66)
+.|+.|.|.-|-.++|.++
T Consensus 7 ~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 7 FEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 5799999999999988874
No 146
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=31.78 E-value=31 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=22.4
Q ss_pred CCCCCccHHHHHHHHH-----HhCCHHHHHh
Q 035374 36 PGVEGIGDVRAVQLIT-----KFGMLVFNVE 61 (66)
Q Consensus 36 ~gi~GiG~K~A~~Ll~-----~fgsl~~i~~ 61 (66)
-.|+|+|+..|..+++ .|.|++++.+
T Consensus 970 ~aIkGlG~~~a~~Iv~aR~~gpF~s~~Df~~ 1000 (1041)
T 3f2b_A 970 NAIPGLGTNVAQAIVRAREEGEFLSKEDLQQ 1000 (1041)
T ss_dssp GGSTTCCHHHHHHHHHHHHTSCCCSHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 3589999999999998 4899998874
No 147
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=31.63 E-value=15 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=18.6
Q ss_pred hhCCCCCCCCCCCCccHHHHHHHHHH
Q 035374 27 LVGDKADNIPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 27 L~Gd~~D~i~gi~GiG~K~A~~Ll~~ 52 (66)
|+.-+-+.+-.++|+|+|+..++..+
T Consensus 42 L~~~se~dLlki~n~G~kSl~EI~~~ 67 (79)
T 3gfk_B 42 LANKTEEDMMKVRNLGRKSLEEVKAK 67 (79)
T ss_dssp HTTCCHHHHTTSTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHcCCCCHhHHHHHHHH
Confidence 34444456778899999999887543
No 148
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=31.44 E-value=32 Score=22.10 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035374 41 IGDVRAVQLITKFGMLVFNV 60 (66)
Q Consensus 41 iG~K~A~~Ll~~fgsl~~i~ 60 (66)
||+..|.+||..-|++.++-
T Consensus 41 vG~~vaArLI~~AGgL~~LA 60 (169)
T 3gqu_A 41 VGAKLGARLISLAGGLKELA 60 (169)
T ss_dssp HCHHHHHHHHHHHTSHHHHH
T ss_pred hChHHHHHHHHHhCCHHHHh
Confidence 45678999999999999875
No 149
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=31.16 E-value=22 Score=26.02 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=23.0
Q ss_pred CChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhC
Q 035374 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG 54 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg 54 (66)
++|++..++..-. .--+..++|||++++.+|-+.||
T Consensus 293 i~~~~~~~fL~~~---~lPV~~l~GIG~~t~~~L~~llG 328 (520)
T 3mfi_A 293 VKNDCLLDFLDCG---KFEITSFWTLGGVLGKELIDVLD 328 (520)
T ss_dssp CCGGGHHHHHTSS---SCCGGGSTTCSSHHHHHHHHHTT
T ss_pred cChHHHHHHhhcc---CCcHHHhcCCCHHHHHHHHHhcC
Confidence 4555555443210 01355789999999999988753
No 150
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=30.38 E-value=43 Score=24.47 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=24.8
Q ss_pred CChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhC--CHHHHH
Q 035374 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFG--MLVFNV 60 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fg--sl~~i~ 60 (66)
++|++..++..- --+..++|||++++.+|- +.| ++.++.
T Consensus 303 l~~~~~~~~L~~-----LPV~~l~GIG~~t~~kL~-~lGI~TigDLa 343 (504)
T 3gqc_A 303 LKPEEVDDFIRG-----QLVTNLPGVGHSMESKLA-SLGIKTCGDLQ 343 (504)
T ss_dssp CCGGGHHHHHHH-----SBGGGSTTCCHHHHHHHH-HTTCCBHHHHT
T ss_pred ECHHHHHHHHhc-----CChhHhhCcCHHHHHHHH-HcCCCcHHHHH
Confidence 566666655432 235667999999998864 444 555554
No 151
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=30.32 E-value=29 Score=23.42 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035374 41 IGDVRAVQLITKFGMLVFNV 60 (66)
Q Consensus 41 iG~K~A~~Ll~~fgsl~~i~ 60 (66)
||+.+|.+||..-|++.++-
T Consensus 150 vG~~vaArLI~~AGsL~~La 169 (260)
T 2ozb_B 150 IGASTAAKIMGVAGGLTNLS 169 (260)
T ss_dssp HHHHHHHHHHHHHTSHHHHH
T ss_pred hCcHHHHHHHHHhCCHHHHh
Confidence 78999999999999999875
No 152
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=29.24 E-value=30 Score=20.99 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=16.2
Q ss_pred CCCCCCccHHHHHHHH-HHhC
Q 035374 35 IPGVEGIGDVRAVQLI-TKFG 54 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll-~~fg 54 (66)
+-|.||-|.-|..+.| ++|+
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 5 LMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999988 5565
No 153
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=29.20 E-value=24 Score=20.58 Aligned_cols=18 Identities=17% Similarity=0.593 Sum_probs=15.0
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+.|.||.|.-|..+.|.+
T Consensus 6 i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 6 VTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEECTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999998888876
No 154
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=29.18 E-value=30 Score=19.75 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=15.2
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-|.+|.|+-|..+.|.+
T Consensus 6 l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 6 LEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EECSSSSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999998865
No 155
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.92 E-value=32 Score=20.81 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.2
Q ss_pred CCCCCCccHHHHHHHH-HHhC
Q 035374 35 IPGVEGIGDVRAVQLI-TKFG 54 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll-~~fg 54 (66)
+-|.||-|.-|..+.| ++|+
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 5 LMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999988 5565
No 156
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=28.89 E-value=41 Score=18.37 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=8.7
Q ss_pred HHHHHhCCCChhHHH
Q 035374 8 DFARKYGELKPSQFV 22 (66)
Q Consensus 8 ~v~~~~g~i~p~q~~ 22 (66)
.|.+.+| ++|.+|.
T Consensus 90 ~Fk~~~G-~tP~~yr 103 (108)
T 3mn2_A 90 DYRDMFG-EKPSETL 103 (108)
T ss_dssp HHHHHHS-SCHHHHH
T ss_pred HHHHHHC-cChHHHH
Confidence 4556665 7776664
No 157
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=28.87 E-value=41 Score=18.42 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=10.7
Q ss_pred HHHHHHhCCCChhHHHH
Q 035374 7 EDFARKYGELKPSQFVD 23 (66)
Q Consensus 7 ~~v~~~~g~i~p~q~~d 23 (66)
..|.+.+| ++|.+|..
T Consensus 90 r~Fk~~~G-~tP~~yR~ 105 (108)
T 3oou_A 90 RQFKKHTG-ETPNRYRK 105 (108)
T ss_dssp HHHHHHHS-SCHHHHHH
T ss_pred HHHHHHhC-cCHHHHHH
Confidence 45566776 78877753
No 158
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=28.27 E-value=41 Score=18.34 Aligned_cols=19 Identities=32% Similarity=0.760 Sum_probs=15.8
Q ss_pred eCHHHHHHHhCCCChhHHHH
Q 035374 4 FGMEDFARKYGELKPSQFVD 23 (66)
Q Consensus 4 ~~~~~v~~~~g~i~p~q~~d 23 (66)
++.++|.+-|| +++++|-.
T Consensus 34 LsdedF~~vFg-msr~eF~~ 52 (68)
T 1qzp_A 34 LSAEDFSRVFA-MSPEEFGK 52 (68)
T ss_dssp BCHHHHHHHSS-SCHHHHHH
T ss_pred CCHHHHHHHHC-cCHHHHHH
Confidence 56789999998 99998864
No 159
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=28.24 E-value=43 Score=18.31 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=10.0
Q ss_pred HHHHHHhCCCChhHHH
Q 035374 7 EDFARKYGELKPSQFV 22 (66)
Q Consensus 7 ~~v~~~~g~i~p~q~~ 22 (66)
..+.+.+| ++|.+|.
T Consensus 89 r~Fk~~~G-~tP~~yr 103 (107)
T 2k9s_A 89 RVFKKCTG-ASPSEFR 103 (107)
T ss_dssp HHHHHHHS-SCHHHHH
T ss_pred HHHHHHHC-cCHHHHH
Confidence 45666676 7777765
No 160
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=28.23 E-value=50 Score=22.16 Aligned_cols=28 Identities=0% Similarity=-0.152 Sum_probs=21.8
Q ss_pred CCCCCCCccHHHHHHHHHH-hCCHHHHHh
Q 035374 34 NIPGVEGIGDVRAVQLITK-FGMLVFNVE 61 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~-fgsl~~i~~ 61 (66)
.+-.+||||++++.++-++ ..|++++.+
T Consensus 158 pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 186 (328)
T 3im1_A 158 PLRQIPHFNNKILEKCKEINVETVYDIMA 186 (328)
T ss_dssp GGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred ceeCCCCCCHHHHHHHHhCCCCCHHHHhc
Confidence 4668999999999987654 457888764
No 161
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=27.86 E-value=31 Score=20.06 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=15.5
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+.|.||.|.-|..+.|.+
T Consensus 8 i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 8 VTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 458899999999888877
No 162
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=27.57 E-value=43 Score=18.23 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=14.5
Q ss_pred eCHHHHHHHhCCCChhHHH
Q 035374 4 FGMEDFARKYGELKPSQFV 22 (66)
Q Consensus 4 ~~~~~v~~~~g~i~p~q~~ 22 (66)
++.++|.+-|| +++++|-
T Consensus 33 LsdedF~~vFg-msr~eF~ 50 (67)
T 2k6m_S 33 LTDEDFEFALD-MTRDEYN 50 (67)
T ss_dssp SCHHHHHHHTS-SCHHHHT
T ss_pred CCHHHHHHHHC-cCHHHHH
Confidence 56788999998 9988774
No 163
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=27.47 E-value=39 Score=22.89 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035374 41 IGDVRAVQLITKFGMLVFNV 60 (66)
Q Consensus 41 iG~K~A~~Ll~~fgsl~~i~ 60 (66)
+|+..|.+|+..-|++.++-
T Consensus 136 vG~~vaArLIs~AGgL~~LA 155 (255)
T 3icx_A 136 VGPALGARLLSIAGSLDELA 155 (255)
T ss_dssp HCHHHHHHHHHHHSSHHHHT
T ss_pred hccHHHHHHHHHcCCHHHHh
Confidence 47899999999999999874
No 164
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=27.27 E-value=39 Score=18.20 Aligned_cols=14 Identities=21% Similarity=0.295 Sum_probs=12.2
Q ss_pred CccHHHHHHHHHHh
Q 035374 40 GIGDVRAVQLITKF 53 (66)
Q Consensus 40 GiG~K~A~~Ll~~f 53 (66)
|||.+++.+|+++.
T Consensus 27 gIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 27 RIGENKLRRLAEEN 40 (70)
T ss_dssp CSCHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHcC
Confidence 88999999999874
No 165
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=27.21 E-value=32 Score=20.22 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.8
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+.|.+|.|.-|-.++|.+
T Consensus 5 i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 5 IFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHH
Confidence 468899999999999887
No 166
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=27.09 E-value=39 Score=18.31 Aligned_cols=14 Identities=29% Similarity=0.781 Sum_probs=9.0
Q ss_pred HHHHHHhCCCChhHH
Q 035374 7 EDFARKYGELKPSQF 21 (66)
Q Consensus 7 ~~v~~~~g~i~p~q~ 21 (66)
..+.+.+| ++|.+|
T Consensus 88 r~Fk~~~G-~tP~~y 101 (103)
T 3lsg_A 88 TKFKKYYQ-ITPKQY 101 (103)
T ss_dssp HHHHHHHS-SCHHHH
T ss_pred HHHHHHHC-cCHHHH
Confidence 34556666 777766
No 167
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=26.94 E-value=26 Score=25.53 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=18.4
Q ss_pred CCCCCCCccHHHHHHHHHHhC--CHHHHHh
Q 035374 34 NIPGVEGIGDVRAVQLITKFG--MLVFNVE 61 (66)
Q Consensus 34 ~i~gi~GiG~K~A~~Ll~~fg--sl~~i~~ 61 (66)
-+..|+|||++++.+ |+++| |+.++.+
T Consensus 339 PV~kl~GIG~~t~~~-L~~lGI~TigDL~~ 367 (517)
T 3pzp_A 339 PIRKVSGIGKVTEKM-LKALGIITCTELYQ 367 (517)
T ss_dssp BGGGSTTCCHHHHHH-HHHTTCCBHHHHHH
T ss_pred ChhhhccccHHHHHH-HHHhCCCcHHHHHh
Confidence 356789999888766 46665 5555543
No 168
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=26.91 E-value=55 Score=20.36 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=14.7
Q ss_pred CHHHHHHHhCCCChhHHH
Q 035374 5 GMEDFARKYGELKPSQFV 22 (66)
Q Consensus 5 ~~~~v~~~~g~i~p~q~~ 22 (66)
|++.+.++|+ +|++|--
T Consensus 56 DpeA~l~~~g-LTeEEr~ 72 (139)
T 1b4u_A 56 DESAYLDEWN-LTPAAKA 72 (139)
T ss_dssp CHHHHHHTTT-CCHHHHH
T ss_pred CHHHHHHHcC-CCHHHHH
Confidence 6788999998 9999866
No 169
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=26.78 E-value=48 Score=18.07 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.9
Q ss_pred eCHHHHHHHhCCCChhHHH
Q 035374 4 FGMEDFARKYGELKPSQFV 22 (66)
Q Consensus 4 ~~~~~v~~~~g~i~p~q~~ 22 (66)
++.++|.+-|| +++++|-
T Consensus 33 LsdedF~~vFg-ms~~eF~ 50 (67)
T 1yu8_X 33 LSDEDFKAVFG-MTRSAFA 50 (67)
T ss_dssp SCHHHHHHHHS-SCHHHHH
T ss_pred CCHHHHHHHHC-cCHHHHH
Confidence 56788999998 9998875
No 170
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=26.57 E-value=14 Score=20.93 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCChhHHHHHHHhhCC
Q 035374 6 MEDFARKYGELKPSQFVDVISLVGD 30 (66)
Q Consensus 6 ~~~v~~~~g~i~p~q~~d~~~L~Gd 30 (66)
.+.++++|+ +.++|++ +++..|
T Consensus 20 k~~lL~~y~-i~~~qLP--rI~~~D 41 (78)
T 1hmj_A 20 VEEILKRYN-IKIQQLP--KIYEDD 41 (78)
T ss_pred HHHHHHHcC-CCHHHCC--eeeCcC
Confidence 367889998 9999999 455554
No 171
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=26.29 E-value=43 Score=27.18 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=17.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCCcc
Q 035374 20 QFVDVISLVGDKADNIPGVEGIG 42 (66)
Q Consensus 20 q~~d~~~L~Gd~~D~i~gi~GiG 42 (66)
.|+=+|.|+| .|.+|.+|++.
T Consensus 277 DfVfl~fl~G--NDFLP~lp~l~ 297 (1140)
T 2y35_A 277 DWVLMGFLVG--NDFIPHLPCLH 297 (1140)
T ss_dssp HHHHHHHHHC--CTTSCCCTTCC
T ss_pred HHHHHHHHhC--CccCCCCCccc
Confidence 4555799999 59999999986
No 172
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=26.16 E-value=43 Score=22.75 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHhCCHHHHH
Q 035374 41 IGDVRAVQLITKFGMLVFNV 60 (66)
Q Consensus 41 iG~K~A~~Ll~~fgsl~~i~ 60 (66)
||+..|.+||..-|++.++-
T Consensus 146 vG~~vaArLI~~AGgL~~LA 165 (258)
T 1nt2_B 146 VGAKVAAKLLERAGSMERLV 165 (258)
T ss_dssp HCHHHHHHHHHHHCSHHHHH
T ss_pred hCcHHHHHHHHHhCCHHHHh
Confidence 46788999999999999875
No 173
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.70 E-value=57 Score=17.64 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=19.3
Q ss_pred HHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHhCCH
Q 035374 8 DFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKFGML 56 (66)
Q Consensus 8 ~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~fgsl 56 (66)
..+.+|+.=+|+.|-.++..+| |++.++.++|..+
T Consensus 21 ~al~~~p~~t~~RW~~IA~~lg--------------Rt~~eV~~~y~~L 55 (72)
T 2cqq_A 21 RSMVKFPGGTPGRWEKIAHELG--------------RSVTDVTTKAKQL 55 (72)
T ss_dssp HHHHHSCTTCTTHHHHHHHHHT--------------SCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcHHHHHHHHhC--------------CCHHHHHHHHHHH
Confidence 4445565445666666665554 4555666655444
No 174
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=25.68 E-value=42 Score=23.92 Aligned_cols=21 Identities=29% Similarity=0.175 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHHhCCHHHHHh
Q 035374 41 IGDVRAVQLITKFGMLVFNVE 61 (66)
Q Consensus 41 iG~K~A~~Ll~~fgsl~~i~~ 61 (66)
||+.+|.+||..-|++.++-.
T Consensus 270 vG~~vaArLIs~AGgL~~LAK 290 (376)
T 2nnw_A 270 VGAKLAARLISLAGGLRELAM 290 (376)
T ss_dssp HCHHHHHHHHHHHTSHHHHHH
T ss_pred hChHHHHHHHHHhCCHHHHhh
Confidence 789999999999999998753
No 175
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=25.65 E-value=37 Score=19.94 Aligned_cols=19 Identities=26% Similarity=0.758 Sum_probs=16.2
Q ss_pred CCCCCCccHHHHHHHHHHh
Q 035374 35 IPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~f 53 (66)
+.|.+|-|.-|..+.|.+.
T Consensus 5 l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4688999999999998874
No 176
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=25.34 E-value=38 Score=19.63 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.8
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+.|.||-|.-|..++|++
T Consensus 12 l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999999987
No 177
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=25.12 E-value=38 Score=19.42 Aligned_cols=18 Identities=17% Similarity=0.280 Sum_probs=15.8
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+.|.+|-|.-|..+.|++
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 5 LIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EESCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 458899999999999987
No 178
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=24.80 E-value=38 Score=20.03 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=15.7
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+.|.||-|.-|..+.|.+
T Consensus 9 i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 9 FEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 468899999999998877
No 179
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=24.57 E-value=51 Score=18.74 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=15.8
Q ss_pred CCCCCCCCccHHHHHHHHHH
Q 035374 33 DNIPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 33 D~i~gi~GiG~K~A~~Ll~~ 52 (66)
+.+-.++|+|+|+..++...
T Consensus 44 ~dLlki~n~G~KSl~EI~~~ 63 (86)
T 3k4g_A 44 VELLXTPNLGXXSLTEIXDV 63 (86)
T ss_dssp HHHHTSTTCCHHHHHHHHHH
T ss_pred HHHhhccccCcccHHHHHHH
Confidence 45667899999999887654
No 180
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=24.40 E-value=33 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.6
Q ss_pred CCCCC-CccHHHHHHHHHH
Q 035374 35 IPGVE-GIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~-GiG~K~A~~Ll~~ 52 (66)
|..|| ||||-|..-||++
T Consensus 275 iTPVPGGVGPmTiamLl~N 293 (303)
T 4b4u_A 275 YTPVPGGVGPMTITTLIRQ 293 (303)
T ss_dssp ECCSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCchHHHHHHHHHH
Confidence 44556 5999999999987
No 181
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=24.33 E-value=52 Score=18.85 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.4
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-|.||-|.-|..+.|.+
T Consensus 7 i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 7 TIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHh
Confidence 457899999999888887
No 182
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=24.26 E-value=51 Score=18.18 Aligned_cols=16 Identities=6% Similarity=0.353 Sum_probs=10.8
Q ss_pred HHHHHHhCCCChhHHHH
Q 035374 7 EDFARKYGELKPSQFVD 23 (66)
Q Consensus 7 ~~v~~~~g~i~p~q~~d 23 (66)
..|.+.+| ++|.+|..
T Consensus 92 r~Fk~~~G-~tP~~yR~ 107 (113)
T 3oio_A 92 STYRNHFN-ITPREERA 107 (113)
T ss_dssp HHHHHHHS-SCHHHHHH
T ss_pred HHHHHHHC-cCHHHHHH
Confidence 45667776 88877753
No 183
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=24.23 E-value=73 Score=20.85 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.1
Q ss_pred HHHHHHhCCCChhHHHHHHHhhC
Q 035374 7 EDFARKYGELKPSQFVDVISLVG 29 (66)
Q Consensus 7 ~~v~~~~g~i~p~q~~d~~~L~G 29 (66)
..++.+| ++++|+.||..++-
T Consensus 135 ~~iL~~~--L~~eql~DY~~fv~ 155 (190)
T 3thf_A 135 AGLLAKN--LSADMCADYDYFIN 155 (190)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHH
T ss_pred HHHHHHh--CCHHHHHHHHHHHH
Confidence 4577787 79999999998763
No 184
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=23.79 E-value=76 Score=18.00 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.4
Q ss_pred eCHHHHHHHhCCCChhHHHHHHHhh
Q 035374 4 FGMEDFARKYGELKPSQFVDVISLV 28 (66)
Q Consensus 4 ~~~~~v~~~~g~i~p~q~~d~~~L~ 28 (66)
.+..++.++|+ |++++|-.+....
T Consensus 50 ~s~~e~arry~-Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 50 ITEREALDRYS-LSEEEFALWRSAV 73 (95)
T ss_dssp SCHHHHHHHTT-CCHHHHHHHHHHT
T ss_pred CCHHHHHHHhC-CCHHHHHHHHHHH
Confidence 46788999998 9999999888764
No 185
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=23.53 E-value=58 Score=18.19 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=11.5
Q ss_pred HHHHHHhCCCChhHHHH
Q 035374 7 EDFARKYGELKPSQFVD 23 (66)
Q Consensus 7 ~~v~~~~g~i~p~q~~d 23 (66)
..|.+.+| ++|.+|..
T Consensus 91 r~Fk~~~G-~tP~~yr~ 106 (120)
T 3mkl_A 91 YVFRNYYG-MTPTEYQE 106 (120)
T ss_dssp HHHHHHHS-SCHHHHHH
T ss_pred HHHHHHHC-cCHHHHHH
Confidence 45667777 88888874
No 186
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=23.53 E-value=29 Score=20.27 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=18.6
Q ss_pred hhCCCCCCCCCCCCccHHHHHHHHHH
Q 035374 27 LVGDKADNIPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 27 L~Gd~~D~i~gi~GiG~K~A~~Ll~~ 52 (66)
|+.-+-+.+-.++|+|+|+..++...
T Consensus 50 L~~~se~dLlki~n~G~KSl~EI~~~ 75 (98)
T 1coo_A 50 LVQRTEVELLKTPNLGKKSLTEIKDV 75 (98)
T ss_dssp HHTSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHhCCHHHHHhcCCCCHHHHHHHHHH
Confidence 33334456678899999998887655
No 187
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=23.40 E-value=43 Score=19.48 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=15.4
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+.|.+|-|.-|..+.|.+
T Consensus 5 l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 5 FEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999988877
No 188
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=23.37 E-value=36 Score=19.94 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=15.3
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-|.||-|.-|..+.|.+
T Consensus 10 l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 10 VTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999888876
No 189
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=23.34 E-value=44 Score=19.22 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=15.6
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-|.||-|.-|..+.|.+
T Consensus 7 l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 7 MVGARGCGMTTVGRELAR 24 (173)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999999887
No 190
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=23.32 E-value=63 Score=27.05 Aligned_cols=29 Identities=7% Similarity=-0.031 Sum_probs=24.1
Q ss_pred CCCCCCCCccHHHHHHHHHH-hCCHHHHHh
Q 035374 33 DNIPGVEGIGDVRAVQLITK-FGMLVFNVE 61 (66)
Q Consensus 33 D~i~gi~GiG~K~A~~Ll~~-fgsl~~i~~ 61 (66)
..+..|||||+++|.+|.+. +.|++++.+
T Consensus 1557 ~~L~qip~i~~~~ar~l~~~gi~t~~dl~~ 1586 (1724)
T 4f92_B 1557 SYLKQLPHFTSEHIKRCTDKGVESVFDIME 1586 (1724)
T ss_dssp CGGGGSTTCCHHHHHHHHHHTCCSHHHHHS
T ss_pred cCEecCCCCCHHHHHHHHHCCCCCHHHHHh
Confidence 35678999999999999877 678888874
No 191
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=23.05 E-value=23 Score=24.37 Aligned_cols=31 Identities=29% Similarity=0.556 Sum_probs=20.0
Q ss_pred CChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHH
Q 035374 16 LKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLIT 51 (66)
Q Consensus 16 i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~ 51 (66)
++|++..++..-+ -+..++|||++++.+|-+
T Consensus 167 ~~~~~~~~~L~~l-----pv~~l~GiG~~~~~~L~~ 197 (362)
T 4f4y_A 167 IRPTEVQDFLNEL-----DIDEIPGIGSVLARRLNE 197 (362)
T ss_dssp CCTTTHHHHHHTC-----BSTTSTTCCSTTHHHHHH
T ss_pred ECHHHHHHHHHhC-----ChhhccCCCHHHHHHHHH
Confidence 4566665544321 356679999999987643
No 192
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=22.85 E-value=57 Score=18.83 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=15.5
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-|.+|-|+-|..+.|.+
T Consensus 8 l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999998887
No 193
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=22.66 E-value=76 Score=19.58 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.8
Q ss_pred CHHHHHHHhCCCChhHHHHHHH
Q 035374 5 GMEDFARKYGELKPSQFVDVIS 26 (66)
Q Consensus 5 ~~~~v~~~~g~i~p~q~~d~~~ 26 (66)
|++.+.+..| ++++++++...
T Consensus 16 DL~~vA~~~g-ls~~evi~~h~ 36 (141)
T 2zp2_A 16 DLEEVAKINQ-LSPEEVIDIHT 36 (141)
T ss_dssp THHHHHHHTT-CCHHHHHHHHT
T ss_pred CHHHHHHHhC-cCHHHHHHHHh
Confidence 6889999998 99999997653
No 194
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=22.27 E-value=46 Score=19.69 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=16.5
Q ss_pred CCCCCCccHHHHHHHHHHh
Q 035374 35 IPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~f 53 (66)
+.|.+|-|.-|..+.|.+.
T Consensus 9 l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 9 FEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EECCTTSSHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999874
No 195
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=22.02 E-value=39 Score=19.82 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.6
Q ss_pred CCCCCCccHHHHHHHHHH-hC
Q 035374 35 IPGVEGIGDVRAVQLITK-FG 54 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~-fg 54 (66)
+.|.||-|.-|..+.|.+ ++
T Consensus 14 l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 14 VVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp EEECTTSSHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 568899999999988875 55
No 196
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=22.02 E-value=59 Score=18.46 Aligned_cols=16 Identities=13% Similarity=0.430 Sum_probs=12.2
Q ss_pred HHHHHHhCCCChhHHHH
Q 035374 7 EDFARKYGELKPSQFVD 23 (66)
Q Consensus 7 ~~v~~~~g~i~p~q~~d 23 (66)
..|.+.+| ++|.+|..
T Consensus 96 r~Fk~~~G-~tP~~yR~ 111 (129)
T 1bl0_A 96 RTFKNYFD-VPPHKYRM 111 (129)
T ss_dssp HHHHHHHS-SCHHHHHT
T ss_pred HHHHHHHC-cCHHHHHH
Confidence 45677887 99998874
No 197
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=22.01 E-value=98 Score=16.23 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=18.9
Q ss_pred eCHHHHH-----HHhCCCChhHHHHHHHhhCCCC
Q 035374 4 FGMEDFA-----RKYGELKPSQFVDVISLVGDKA 32 (66)
Q Consensus 4 ~~~~~v~-----~~~g~i~p~q~~d~~~L~Gd~~ 32 (66)
.+.+++. +++| ++.+++..|..+...++
T Consensus 11 ~d~ewl~LI~~Ak~lG-lsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 11 LDQEWVELMVEAKEAN-ISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp CCHHHHHHHHHHHHTT-CCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCC
Confidence 4555553 7888 99999999999886544
No 198
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=21.94 E-value=68 Score=25.59 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=22.5
Q ss_pred HHHHHHHhhCCCCCCCCCCCCc--cHHHHHHHHHHh
Q 035374 20 QFVDVISLVGDKADNIPGVEGI--GDVRAVQLITKF 53 (66)
Q Consensus 20 q~~d~~~L~Gd~~D~i~gi~Gi--G~K~A~~Ll~~f 53 (66)
.|+=+|.++| -|.+|.+|.+ -+-..-.|++-|
T Consensus 328 DfVfmcFfvG--NDFLPhlP~l~I~egaid~L~~~Y 361 (899)
T 3fqd_A 328 DWVFFIFFVG--NDFLPHLPSLDIRDGAVERLTEIW 361 (899)
T ss_dssp HHHHHGGGGC--CSSSCCCTTCCGGGTHHHHHHHHH
T ss_pred hhhhhhHhhC--cccCCCCCccCcCCChHHHHHHHH
Confidence 6666899999 5999999954 454444555554
No 199
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=21.73 E-value=47 Score=19.85 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=15.6
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-|.||-|.-|..+.|.+
T Consensus 25 l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 25 LLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 458899999999999876
No 200
>2km6_A Nacht, LRR and PYD domains-containing protein 7; NLRP7, pyrin domain, innate immune system, NALP, ATP-binding mutation, leucine-rich repeat; NMR {Homo sapiens}
Probab=21.54 E-value=1.3e+02 Score=17.38 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=31.5
Q ss_pred CCCChhHHHHHHHhhCCCCCCCCCCCCc---------cHHHHHHHHHHhCCHHH
Q 035374 14 GELKPSQFVDVISLVGDKADNIPGVEGI---------GDVRAVQLITKFGMLVF 58 (66)
Q Consensus 14 g~i~p~q~~d~~~L~Gd~~D~i~gi~Gi---------G~K~A~~Ll~~fgsl~~ 58 (66)
..+++++|-.|+-++.+..-. +|.+.| +...|..|++.|+.-..
T Consensus 17 E~L~~~ElkkFK~~L~~~~l~-~g~~~Ip~~ele~Ad~~dLa~lLv~~y~e~~A 69 (106)
T 2km6_A 17 EQLNEDELKSFKSLLWAFPLE-DVLQKTPWSEVEEADGKKLAEILVNTSSENWI 69 (106)
T ss_dssp HHSCTTHHHHHHHHHTTSCCC-TTGGGCCHHHHHHCCTHHHHHHHHHHSCHHHH
T ss_pred HHcCHHHHHHHHHHHcccccc-ccCCCCChHhhhcCCHHHHHHHHHHHcCHHHH
Confidence 347899999999999864422 344444 77888888888986543
No 201
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=20.82 E-value=67 Score=18.71 Aligned_cols=18 Identities=17% Similarity=0.433 Sum_probs=15.5
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+-|.||.|.-|..+.|.+
T Consensus 16 i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 568899999999998864
No 202
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=20.80 E-value=1.1e+02 Score=20.12 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=24.2
Q ss_pred ee-CHHHHHHHhCCCChhHHHHHHHhhC
Q 035374 3 SF-GMEDFARKYGELKPSQFVDVISLVG 29 (66)
Q Consensus 3 ~~-~~~~v~~~~g~i~p~q~~d~~~L~G 29 (66)
.| +..++.+..| ++++.+..++.-+|
T Consensus 77 ~yvT~~eVAe~aG-v~~e~~rr~wRalG 103 (222)
T 2ev1_A 77 TYVSAREISENYG-VDLELLQRVQRAVG 103 (222)
T ss_dssp CEECHHHHHHHHT-CCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHC-cCHHHHHHHHHHhC
Confidence 46 9999999998 99999999999999
No 203
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=20.71 E-value=44 Score=19.92 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=15.9
Q ss_pred CCCCCCccHHHHHHHHHH
Q 035374 35 IPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~ 52 (66)
+.|.+|-|.-|..+.|++
T Consensus 15 l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 15 FEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 568899999999999987
No 204
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=20.62 E-value=44 Score=19.36 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.4
Q ss_pred CCCCCCccHHHHHHHHHH-hC
Q 035374 35 IPGVEGIGDVRAVQLITK-FG 54 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~-fg 54 (66)
+-|.||-|.-|..+.|.+ ++
T Consensus 11 l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 11 VLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEESTTSSHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 457899999999988876 45
No 205
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=20.50 E-value=1.6e+02 Score=18.73 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=29.5
Q ss_pred ceeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHHh
Q 035374 2 ASFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 2 ~~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~f 53 (66)
..++.+++.+..| ++|.|+.--....|. -|-+|+|-. ...|++.+
T Consensus 32 ~~iss~~l~~~~~-~~~~~iRkdls~fg~-----~G~~g~gY~-v~~L~~~~ 76 (215)
T 2vt3_A 32 QRVSSAELSDAVK-VDSATIRRDFSYFGA-----LGKKGYGYN-VDYLLSFF 76 (215)
T ss_dssp CEECHHHHHHHHC-CCHHHHHHHHHHTTC-----CC-----EE-HHHHHHHH
T ss_pred cEECHHHHHHHhC-CCHHHeechHHHHHH-----hcCCcceEE-hHHHHHHH
Confidence 3577889999998 999999987777784 266888875 34555554
No 206
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=20.42 E-value=65 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=22.6
Q ss_pred CCCCCCccHHHHHHHHHH------hCCHHHHHhh
Q 035374 35 IPGVEGIGDVRAVQLITK------FGMLVFNVEC 62 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~------fgsl~~i~~~ 62 (66)
+..|+|+|+..|..+++. |.|+++++.-
T Consensus 835 l~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R 868 (910)
T 2hnh_A 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCAR 868 (910)
T ss_dssp GGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTS
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHh
Confidence 457899999999999864 7888888754
No 207
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=20.27 E-value=52 Score=21.30 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=12.6
Q ss_pred CCCccHHHHHHHHHHhC
Q 035374 38 VEGIGDVRAVQLITKFG 54 (66)
Q Consensus 38 i~GiG~K~A~~Ll~~fg 54 (66)
+--||++||..| +++|
T Consensus 117 i~aVG~~Ta~aL-~~~G 132 (286)
T 1jr2_A 117 VYVVGNATASLV-SKIG 132 (286)
T ss_dssp EEECSHHHHHHH-HHTT
T ss_pred EEEECHHHHHHH-HHcC
Confidence 458999999988 5655
No 208
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.22 E-value=1.5e+02 Score=19.17 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=29.5
Q ss_pred eeCHHHHHHHhCCCChhHHHHHHHhhCCCCCCCCCCCCccHHHHHHHHHH
Q 035374 3 SFGMEDFARKYGELKPSQFVDVISLVGDKADNIPGVEGIGDVRAVQLITK 52 (66)
Q Consensus 3 ~~~~~~v~~~~g~i~p~q~~d~~~L~Gd~~D~i~gi~GiG~K~A~~Ll~~ 52 (66)
..+..+|.++.| +++.-.- .+|-|. ++|.++|..++++.
T Consensus 9 ~~Ti~diA~~aG-VS~~TVS--rvLn~~--------~~Vs~~tr~rV~~~ 47 (366)
T 3h5t_A 9 YGTLASIAAKLG-ISRTTVS--NAYNRP--------EQLSAELRQRILDT 47 (366)
T ss_dssp TTHHHHHHHHHT-SCHHHHH--HHHHCG--------GGSCHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-CCHHHHH--HHHCCC--------CCCCHHHHHHHHHH
Confidence 457789999998 9998877 566553 57888888887654
No 209
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=20.07 E-value=53 Score=20.67 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.8
Q ss_pred CCCCCCccHHHHHHHHHHh
Q 035374 35 IPGVEGIGDVRAVQLITKF 53 (66)
Q Consensus 35 i~gi~GiG~K~A~~Ll~~f 53 (66)
+.|++|.|.-|..+.|.++
T Consensus 11 ~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 11 LEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 5689999999999888663
No 210
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=20.07 E-value=1.7e+02 Score=19.17 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHhCCC--ChhHHHHHH----------------HhhCCCCCCC-CCCCCccHHHHHHHHHHhC----------CHH
Q 035374 7 EDFARKYGEL--KPSQFVDVI----------------SLVGDKADNI-PGVEGIGDVRAVQLITKFG----------MLV 57 (66)
Q Consensus 7 ~~v~~~~g~i--~p~q~~d~~----------------~L~Gd~~D~i-~gi~GiG~K~A~~Ll~~fg----------sl~ 57 (66)
.-+++-+| . ++.++.+.. ..+|+....- +|. ||=+.--.++.++|. |++
T Consensus 56 am~L~y~G-~~~~~~~la~~l~~~p~~~~g~~gnP~~gFvG~p~~~~~~g~-giy~~~i~~~a~~y~~~~~~dltG~sl~ 133 (236)
T 3erv_A 56 AMMLQYAG-ITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESGY-GVYHGPLFQLAKKYLPNKAVDLTGKSIE 133 (236)
T ss_dssp HHHHHHTT-CCCCHHHHHHHSCEECSEETTEECCTTTSEEBCSSCTTSCBC-CCCHHHHHHHHHHHCTTTEEECTTSCHH
T ss_pred HHHHHHcC-cCCCHHHHHHHHhhCcccccCCCCCCccCccCCccccCCCcc-eeecHHHHHHHHHHhhcceeecCCCCHH
Confidence 34555555 4 467777663 2245433211 232 666888888888884 778
Q ss_pred HHHhhhc
Q 035374 58 FNVECFS 64 (66)
Q Consensus 58 ~i~~~~~ 64 (66)
+|++.++
T Consensus 134 ~L~~~I~ 140 (236)
T 3erv_A 134 ELYKSVK 140 (236)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876553
No 211
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=20.06 E-value=1.2e+02 Score=17.12 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=21.7
Q ss_pred CceeCHHHHHH-HhCCCChhHHHHHHHhhC
Q 035374 1 MASFGMEDFAR-KYGELKPSQFVDVISLVG 29 (66)
Q Consensus 1 ~~~~~~~~v~~-~~g~i~p~q~~d~~~L~G 29 (66)
|..++.+++++ .+| +++.++.=+.+|..
T Consensus 9 ~~~~~~~~~l~~~~g-Lt~~e~~il~~L~~ 37 (123)
T 3r0a_A 9 CKEFKVEDVIKCALN-LTKADLNVMKSFLN 37 (123)
T ss_dssp TEEEEHHHHHHHHHT-CCHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 34567788877 487 99999988888875
Done!