Query 035376
Match_columns 66
No_of_seqs 102 out of 148
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:34:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00922 Cyt_c_Oxidase_IV Cytoc 92.7 0.58 1.3E-05 30.8 5.9 50 7-56 73-122 (136)
2 PF02936 COX4: Cytochrome c ox 84.9 4.7 0.0001 26.7 5.8 49 7-55 73-121 (142)
3 PF02285 COX8: Cytochrome oxid 75.4 7.7 0.00017 21.4 3.7 27 6-32 13-40 (44)
4 PF11044 TMEMspv1-c74-12: Plec 65.1 20 0.00043 20.2 4.0 35 4-38 3-37 (49)
5 PF06212 GRIM-19: GRIM-19 prot 61.1 9.3 0.0002 25.1 2.5 50 9-60 29-86 (130)
6 PHA02669 hypothetical protein; 59.2 8.2 0.00018 27.3 2.1 24 7-30 2-25 (210)
7 PF12729 4HB_MCP_1: Four helix 57.2 19 0.00041 21.8 3.3 17 8-24 8-24 (181)
8 PF01102 Glycophorin_A: Glycop 56.9 27 0.00058 22.8 4.1 25 8-32 67-91 (122)
9 TIGR00847 ccoS cytochrome oxid 55.7 9.2 0.0002 21.5 1.6 39 8-46 6-47 (51)
10 PRK13183 psbN photosystem II r 55.2 15 0.00033 20.5 2.4 38 7-48 7-44 (46)
11 PTZ00391 transport protein par 51.9 2.4 5.1E-05 29.0 -1.5 47 10-56 118-167 (168)
12 KOG3300 NADH:ubiquinone oxidor 49.9 19 0.0004 24.5 2.6 45 11-58 35-88 (146)
13 PF07444 Ycf66_N: Ycf66 protei 49.3 30 0.00066 21.2 3.3 24 9-32 5-28 (84)
14 COG3197 FixS Uncharacterized p 48.8 22 0.00048 20.7 2.5 18 8-25 6-23 (58)
15 PF07379 DUF1494: Protein of u 47.3 30 0.00065 24.0 3.3 24 6-29 8-31 (170)
16 PF07215 DUF1419: Protein of u 47.3 4.2 9.2E-05 26.5 -0.8 25 6-30 57-81 (111)
17 PF10805 DUF2730: Protein of u 46.2 43 0.00093 20.8 3.7 44 12-58 9-53 (106)
18 PF13172 PepSY_TM_1: PepSY-ass 45.7 31 0.00067 17.1 2.5 19 10-28 14-32 (34)
19 TIGR03750 conj_TIGR03750 conju 45.5 64 0.0014 20.7 4.5 34 8-41 49-82 (111)
20 PF10355 Ytp1: Protein of unkn 40.9 17 0.00036 26.8 1.3 29 3-31 208-236 (271)
21 CHL00020 psbN photosystem II p 40.4 23 0.0005 19.5 1.6 36 9-48 6-41 (43)
22 PF13980 UPF0370: Uncharacteri 40.3 52 0.0011 19.4 3.1 27 21-47 15-53 (63)
23 COG3296 Uncharacterized protei 39.5 49 0.0011 22.4 3.3 12 31-42 126-137 (143)
24 PRK13664 hypothetical protein; 38.8 83 0.0018 18.5 4.3 31 17-47 12-54 (62)
25 TIGR03818 MotA1 flagellar moto 36.8 32 0.00068 25.1 2.3 23 5-27 168-190 (282)
26 PF05961 Chordopox_A13L: Chord 36.6 54 0.0012 19.7 2.9 20 11-30 4-23 (68)
27 PF06781 UPF0233: Uncharacteri 35.4 45 0.00097 20.6 2.5 17 6-22 67-83 (87)
28 PRK02251 putative septation in 33.7 50 0.0011 20.5 2.5 17 6-22 67-83 (87)
29 PRK10297 PTS system N,N'-diace 33.5 66 0.0014 24.9 3.6 23 5-27 186-208 (452)
30 cd00930 Cyt_c_Oxidase_VIII Cyt 33.4 73 0.0016 17.4 2.9 27 6-32 13-40 (43)
31 PHA00645 hypothetical protein 32.8 8.5 0.00019 25.3 -1.1 30 1-30 28-61 (125)
32 PF09946 DUF2178: Predicted me 32.0 87 0.0019 19.7 3.5 14 47-60 51-64 (111)
33 PF06667 PspB: Phage shock pro 31.8 1.1E+02 0.0024 18.3 3.8 24 9-32 7-30 (75)
34 PF06522 B12D: NADH-ubiquinone 31.2 56 0.0012 19.1 2.3 50 7-58 5-58 (73)
35 PRK10582 cytochrome o ubiquino 30.5 69 0.0015 20.4 2.8 35 6-41 38-77 (109)
36 PRK00159 putative septation in 29.0 65 0.0014 20.0 2.5 17 6-22 67-83 (87)
37 TIGR02847 CyoD cytochrome o ub 29.0 80 0.0017 19.6 2.9 36 6-42 27-67 (96)
38 PF07441 BofA: SigmaK-factor p 28.5 38 0.00083 20.2 1.3 17 12-28 55-71 (78)
39 PF15086 UPF0542: Uncharacteri 28.2 58 0.0012 19.8 2.1 18 15-32 30-47 (74)
40 PHA03049 IMV membrane protein; 28.2 91 0.002 18.7 2.9 19 12-30 5-23 (68)
41 PF02468 PsbN: Photosystem II 28.2 65 0.0014 17.6 2.1 34 10-47 7-40 (43)
42 PF11874 DUF3394: Domain of un 27.9 62 0.0013 22.5 2.4 25 5-30 30-54 (183)
43 PF03021 CM2: Influenza C viru 27.4 41 0.00089 22.1 1.4 50 8-57 56-110 (139)
44 PRK01844 hypothetical protein; 27.0 1.5E+02 0.0033 17.9 4.6 47 4-52 3-51 (72)
45 TIGR02976 phageshock_pspB phag 26.8 1.5E+02 0.0032 17.7 3.9 25 8-32 6-30 (75)
46 COG1291 MotA Flagellar motor c 26.6 55 0.0012 24.1 2.1 20 5-24 150-169 (266)
47 PF15331 TP53IP5: Cellular tum 26.3 17 0.00037 26.2 -0.5 8 3-10 181-188 (220)
48 PF07297 DPM2: Dolichol phosph 26.0 1.6E+02 0.0035 17.8 4.3 31 6-36 46-76 (78)
49 PF01124 MAPEG: MAPEG family; 25.9 57 0.0012 19.4 1.8 20 6-25 59-78 (129)
50 PF12768 Rax2: Cortical protei 25.7 58 0.0013 23.7 2.1 20 17-36 242-261 (281)
51 TIGR00351 narI respiratory nit 25.3 1.9E+02 0.0041 20.2 4.6 37 11-48 91-127 (224)
52 PRK06926 flagellar motor prote 25.3 76 0.0017 23.1 2.6 20 5-24 154-173 (271)
53 PRK09110 flagellar motor prote 25.0 70 0.0015 23.3 2.4 21 5-25 168-188 (283)
54 TIGR00359 cello_pts_IIC phosph 24.9 1.1E+02 0.0024 23.3 3.6 23 5-27 175-197 (423)
55 TIGR00410 lacE PTS system, lac 24.9 1.1E+02 0.0024 23.3 3.6 23 5-27 175-197 (423)
56 KOG0957 PHD finger protein [Ge 24.3 56 0.0012 26.9 1.9 21 33-53 302-322 (707)
57 PF11990 DUF3487: Protein of u 24.2 2.1E+02 0.0044 18.4 4.8 33 9-41 53-85 (121)
58 PRK12482 flagellar motor prote 24.1 84 0.0018 23.1 2.7 22 5-26 168-189 (287)
59 COG1826 TatA Sec-independent p 23.7 66 0.0014 19.5 1.8 21 3-24 4-24 (94)
60 COG3965 Predicted Co/Zn/Cd cat 23.7 1.5E+02 0.0032 22.4 3.9 44 7-50 121-167 (314)
61 PTZ00250 variable surface prot 23.4 54 0.0012 24.8 1.6 15 7-21 276-290 (350)
62 PF11177 DUF2964: Protein of u 23.3 1E+02 0.0022 18.0 2.5 20 7-26 34-53 (62)
63 PRK10557 hypothetical protein; 23.0 1.5E+02 0.0033 20.2 3.6 57 6-62 12-71 (192)
64 PF03597 CcoS: Cytochrome oxid 22.8 1.4E+02 0.0031 16.1 2.8 17 8-24 5-21 (45)
65 PF04277 OAD_gamma: Oxaloaceta 22.7 1.6E+02 0.0035 16.7 4.0 25 8-32 8-32 (79)
66 KOG3188 Uncharacterized conser 22.7 3E+02 0.0066 20.1 5.2 47 8-59 15-63 (246)
67 PRK13610 photosystem II reacti 22.1 24 0.00052 23.1 -0.4 19 31-49 75-100 (113)
68 PF15065 NCU-G1: Lysosomal tra 21.7 99 0.0022 23.4 2.7 18 10-27 318-335 (350)
69 PF04834 Adeno_E3_14_5: Early 21.4 1E+02 0.0022 19.6 2.3 25 12-36 26-51 (97)
70 PF08294 TIM21: TIM21; InterP 21.2 32 0.00069 22.7 0.0 20 11-30 11-30 (145)
71 PF07043 DUF1328: Protein of u 21.2 1E+02 0.0022 16.5 2.0 21 9-29 3-23 (39)
72 KOG4617 Uncharacterized conser 21.2 1.9E+02 0.0041 21.2 4.0 32 10-41 196-227 (249)
73 PRK00191 tatA twin arginine tr 20.7 1.1E+02 0.0023 18.9 2.3 28 1-28 1-31 (84)
74 PF09323 DUF1980: Domain of un 20.6 1.2E+02 0.0025 20.2 2.6 26 5-30 3-28 (182)
75 PF15061 DUF4538: Domain of un 20.2 1.2E+02 0.0025 17.6 2.2 18 13-30 9-26 (58)
76 TIGR03745 conj_TIGR03745 integ 20.1 2.5E+02 0.0055 18.0 4.3 27 12-38 46-75 (104)
77 PF11773 PulG: Type II secreto 20.1 2.2E+02 0.0048 17.5 3.6 23 6-31 3-25 (82)
No 1
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=92.66 E-value=0.58 Score=30.80 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHHHHHHhhhhh
Q 035376 7 EGLLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDVAMERRDKKL 56 (66)
Q Consensus 7 E~Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~~mm~RD~RL 56 (66)
|-..-++....++++.++....++.+.+|-+++.-.+.|+....||-+..
T Consensus 73 ewk~v~~~~~~~i~~s~~~~~~~r~~~~~~~P~T~t~Ewqea~~er~~~~ 122 (136)
T cd00922 73 EWKTVFGGVLAFIGITGVIFGLQRAFVYGPKPHTFTEEWQEAQLERMLDM 122 (136)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHh
Confidence 55667888888889999999999999888888888889999999987764
No 2
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=84.91 E-value=4.7 Score=26.70 Aligned_cols=49 Identities=12% Similarity=-0.032 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHHHHHHhhhh
Q 035376 7 EGLLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDVAMERRDKK 55 (66)
Q Consensus 7 E~Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~~mm~RD~R 55 (66)
|--..++.+..++++++.+...++.+.++..++--.+.|+....+|=..
T Consensus 73 ewk~v~~~~~~~i~~s~~l~~~~r~~~~~~~P~T~~~Ew~ea~~~~m~~ 121 (142)
T PF02936_consen 73 EWKKVFGGVFIFIGFSVLLFIWQRSYVYPPLPHTFSKEWQEAQNERMLD 121 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----GGGSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Confidence 3345678888888899999999998888776777788999988877444
No 3
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=75.43 E-value=7.7 Score=21.37 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHh-HHHHHHHHHH
Q 035376 6 FEGLLPLGIIAAMLTIA-GNAQYQIHKA 32 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~-G~~~~~i~~~ 32 (66)
-|...++.++.++|-+| |+.+.++..+
T Consensus 13 ~e~aigltv~f~~~L~PagWVLshL~~Y 40 (44)
T PF02285_consen 13 AEQAIGLTVCFVTFLGPAGWVLSHLESY 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 47778899988888887 8898888754
No 4
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=65.13 E-value=20 Score=20.16 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCc
Q 035376 4 LIFEGLLPLGIIAAMLTIAGNAQYQIHKAAHGRPK 38 (66)
Q Consensus 4 mwfE~Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~ 38 (66)
.|.-.+-+..||.+.|.-.|...|.=-+...||++
T Consensus 3 ~wlt~iFsvvIil~If~~iGl~IyQkikqIrgKkk 37 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFAWIGLSIYQKIKQIRGKKK 37 (49)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 47788888889999998888887766667777665
No 5
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=61.06 E-value=9.3 Score=25.12 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCCCcccc--CcHHHH------HHHHhhhhhhccc
Q 035376 9 LLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVG--NDMWDV------AMERRDKKLVEQL 60 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~--~D~wd~------~mm~RD~RLtG~~ 60 (66)
+.|..+++++++++.++.+.+-+.|. ..|.. -+.|-+ .+.|+||+.--..
T Consensus 29 ~sg~~~~~~~~~~~~~G~y~~~~~~r--~~r~~~~E~~~ar~al~PlLqAE~DR~~lr~~ 86 (130)
T PF06212_consen 29 PSGWTMFAGGAGIMAYGFYKVGQGNR--ERRELKREKRWARIALLPLLQAEEDRRYLRRL 86 (130)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Confidence 45788999999999999988875421 11211 123333 4678888865433
No 6
>PHA02669 hypothetical protein; Provisional
Probab=59.21 E-value=8.2 Score=27.26 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 035376 7 EGLLPLGIIAAMLTIAGNAQYQIH 30 (66)
Q Consensus 7 E~Lpp~gIi~~~~~v~G~~~~~i~ 30 (66)
++|.-++||.+.|+++|.+.|.+-
T Consensus 2 ~~LVii~iIvavi~LTgAaiYlLi 25 (210)
T PHA02669 2 MALVLIGIIVAVIYLTGAAIYLLI 25 (210)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHH
Confidence 567778999999999999998865
No 7
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=57.23 E-value=19 Score=21.78 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHH
Q 035376 8 GLLPLGIIAAMLTIAGN 24 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~ 24 (66)
++.+|+++++++++.|+
T Consensus 8 L~~~f~~~~~l~~~~~~ 24 (181)
T PF12729_consen 8 LILGFGLIILLLLIVGI 24 (181)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56778888887777765
No 8
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=56.89 E-value=27 Score=22.77 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 035376 8 GLLPLGIIAAMLTIAGNAQYQIHKA 32 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~~~~~i~~~ 32 (66)
+++-||+|++.+++.-.+.+.+++.
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777776677777765
No 9
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=55.70 E-value=9.2 Score=21.54 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHhC-CCCc-cccCcHHH
Q 035376 8 GLLPLGIIAAMLTIAGNAQYQIH-KAAH-GRPK-HVGNDMWD 46 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~~~~~i~-~~~~-Gk~~-R~~~D~wd 46 (66)
+|+|.+++.+++++....-+.=+ +|.+ .+|. |.-.|..|
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk~GQfDDle~~a~riL~Dd~~ 47 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLKSGQYDDLKGAAWRILGDYDD 47 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCccHHHHHHcCccc
Confidence 57888888887776655444333 4433 3343 55455544
No 10
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=55.19 E-value=15 Score=20.49 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHHH
Q 035376 7 EGLLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDVA 48 (66)
Q Consensus 7 E~Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~~ 48 (66)
..+..+.|-+..++++|+++|. .-|.|.+--+|.||.+
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYt----aFGppSk~LrDPFeeH 44 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYT----AFGPPSKELDDPFDDH 44 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeee----ccCCcccccCCchhhc
Confidence 3455566777777888877654 3577767778888753
No 11
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=51.88 E-value=2.4 Score=29.01 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhHHHHHHH-H-HHhCCCCcccc-CcHHHHHHHHhhhhh
Q 035376 10 LPLGIIAAMLTIAGNAQYQI-H-KAAHGRPKHVG-NDMWDVAMERRDKKL 56 (66)
Q Consensus 10 pp~gIi~~~~~v~G~~~~~i-~-~~~~Gk~~R~~-~D~wd~~mm~RD~RL 56 (66)
-|-|||=+++.-.|+-.... | .-..++|+|.. +=++|....+||++|
T Consensus 118 F~~GII~G~L~~~Gf~a~VTA~~~~~~~~~~~t~~likf~~~v~~Re~~~ 167 (168)
T PTZ00391 118 FAAGIVEGILCSAEFPANVTAHTVEDTPKNFSTTILIKFYPEVIEREKSI 167 (168)
T ss_pred hhHHHHHHHHhhCCCCcEEEEEeccCCCCCCceEEEEEecHHHHHHHhhc
Confidence 46788888887777632221 2 11456777777 889999999999987
No 12
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=49.90 E-value=19 Score=24.46 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCCCcccc--CcHHHH-------HHHHhhhhhhc
Q 035376 11 PLGIIAAMLTIAGNAQYQIHKAAHGRPKHVG--NDMWDV-------AMERRDKKLVE 58 (66)
Q Consensus 11 p~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~--~D~wd~-------~mm~RD~RLtG 58 (66)
|+..+++.++++.++.+.+ -.|+++|+. .+.++- ...|||||---
T Consensus 35 g~t~~aa~~gatayG~~~~---~~~~kk~rr~kiEd~~a~nai~PiL~AErDr~~l~ 88 (146)
T KOG3300|consen 35 GMTMFAAVSGATAYGMYQV---GQGNKKRRRLKIEDYAARNAILPILQAERDRRFLS 88 (146)
T ss_pred cchhhhHHHHHHHHHHHHH---HhchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566666666666666554 345666554 455554 36799998654
No 13
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=49.33 E-value=30 Score=21.25 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 035376 9 LLPLGIIAAMLTIAGNAQYQIHKA 32 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~ 32 (66)
+.|.-|++.++++.|.+++....+
T Consensus 5 ~~~~~iLgi~l~~~~~~Ly~lr~~ 28 (84)
T PF07444_consen 5 FGPSYILGIILILGGLALYFLRFF 28 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999998776
No 14
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=48.76 E-value=22 Score=20.70 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 035376 8 GLLPLGIIAAMLTIAGNA 25 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~~ 25 (66)
+|+|.+|+.+++++..+.
T Consensus 6 ~Lipvsi~l~~v~l~~fl 23 (58)
T COG3197 6 ILIPVSILLGAVGLGAFL 23 (58)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 588999999988776543
No 15
>PF07379 DUF1494: Protein of unknown function (DUF1494); InterPro: IPR009968 This family consists of several bacterial proteins of around 175 residues in length. Members of this family seem to be found exclusively in Chlamydia species. The function of this family is unknown.
Probab=47.35 E-value=30 Score=24.03 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHH
Q 035376 6 FEGLLPLGIIAAMLTIAGNAQYQI 29 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~~~~~i 29 (66)
-|.|+.+.+++..|++.|..+-.+
T Consensus 8 ~EllIs~tL~alLlgvLg~w~R~~ 31 (170)
T PF07379_consen 8 MELLISMTLIALLLGVLGFWYREM 31 (170)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHh
Confidence 499999999999999999876544
No 16
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=47.30 E-value=4.2 Score=26.48 Aligned_cols=25 Identities=20% Similarity=0.180 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHH
Q 035376 6 FEGLLPLGIIAAMLTIAGNAQYQIH 30 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~~~~~i~ 30 (66)
||||||+-+=+.||+..=..+..|.
T Consensus 57 leiLPPL~~rg~mFamrEf~tgsVT 81 (111)
T PF07215_consen 57 LEILPPLWMRGDMFAMREFLTGSVT 81 (111)
T ss_pred HhhCCchheecchhhhhhhccCCee
Confidence 6899999999999987666555544
No 17
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.24 E-value=43 Score=20.81 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHHHHH-HHHHhCCCCccccCcHHHHHHHHhhhhhhc
Q 035376 12 LGIIAAMLTIAGNAQYQ-IHKAAHGRPKHVGNDMWDVAMERRDKKLVE 58 (66)
Q Consensus 12 ~gIi~~~~~v~G~~~~~-i~~~~~Gk~~R~~~D~wd~~mm~RD~RLtG 58 (66)
++||.+++++.+....+ +.+- +.+|-..+.=+..+.+-|+||+.
T Consensus 9 w~ii~a~~~~~~~~~~~~l~~~---~a~~~~~~~l~~~~~~~~~Rl~~ 53 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLWLRRT---YAKREDIEKLEERLDEHDRRLQA 53 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHHH
Confidence 45666666544443333 4431 34455667777778888888875
No 18
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=45.67 E-value=31 Score=17.15 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 035376 10 LPLGIIAAMLTIAGNAQYQ 28 (66)
Q Consensus 10 pp~gIi~~~~~v~G~~~~~ 28 (66)
...++....++++|..+++
T Consensus 14 ~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 14 LIAAIFLLLLALTGALLNF 32 (34)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3456677778888887653
No 19
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.51 E-value=64 Score=20.75 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCCCcccc
Q 035376 8 GLLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVG 41 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~ 41 (66)
++.|.+++.+++.+--++-.++.+.--|||-=|-
T Consensus 49 ~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~yl 82 (111)
T TIGR03750 49 ALIPTGALLGPILVVLIGGKLLARLKRGKPEGYL 82 (111)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchHH
Confidence 4556666666666666666667777777775443
No 20
>PF10355 Ytp1: Protein of unknown function (Ytp1); InterPro: IPR018827 This entry represents a conserved sequence region found a family of fungal proteins. It appears to contain regions similar to mitochondrial electron transport proteins. The C-terminal domain is hydrophobic and negatively charged. There are consensus sites for both N-linked glycosylation and cAMP-dependent protein kinase phosphorylation [].
Probab=40.88 E-value=17 Score=26.84 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 035376 3 WLIFEGLLPLGIIAAMLTIAGNAQYQIHK 31 (66)
Q Consensus 3 ~mwfE~Lpp~gIi~~~~~v~G~~~~~i~~ 31 (66)
.-++|.||||.++++.+..++.--..+..
T Consensus 208 ~p~te~l~~F~L~~gGliFM~Stee~~~~ 236 (271)
T PF10355_consen 208 RPPTELLTPFCLIAGGLIFMGSTEEQLEA 236 (271)
T ss_pred CCchhHHHHHHHHHHhHeeeeecHHHHHH
Confidence 45799999999999999888875555543
No 21
>CHL00020 psbN photosystem II protein N
Probab=40.39 E-value=23 Score=19.49 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHHH
Q 035376 9 LLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDVA 48 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~~ 48 (66)
+..+.|-+..++++|+++|. .-|.|-+--+|.||.+
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYt----aFGppSk~LrDPfeeH 41 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYT----AFGQPSKQLRDPFEEH 41 (43)
T ss_pred hHHHHHHHHHHHhhheeeee----ccCCchhccCCchhhc
Confidence 34455666667777776654 3566666668888753
No 22
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=40.28 E-value=52 Score=19.43 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=16.1
Q ss_pred HhHHHHHHHH--------HHhCCCC----ccccCcHHHH
Q 035376 21 IAGNAQYQIH--------KAAHGRP----KHVGNDMWDV 47 (66)
Q Consensus 21 v~G~~~~~i~--------~~~~Gk~----~R~~~D~wd~ 47 (66)
+.|...+.|+ +|-..|| +|-++++||.
T Consensus 15 lvG~i~n~iK~L~RvD~K~fL~nKP~lPPHRDnN~~WDd 53 (63)
T PF13980_consen 15 LVGMIINGIKELRRVDHKKFLDNKPELPPHRDNNAKWDD 53 (63)
T ss_pred HHHHHHHHHHHHHhcCHHHHhcCCCCCCCCCcccccccc
Confidence 4455555554 2444454 3777999984
No 23
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.50 E-value=49 Score=22.39 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=9.6
Q ss_pred HHhCCCCccccC
Q 035376 31 KAAHGRPKHVGN 42 (66)
Q Consensus 31 ~~~~Gk~~R~~~ 42 (66)
|+++|+.+|+-+
T Consensus 126 Ka~eGq~YryPL 137 (143)
T COG3296 126 KAYEGQEYRYPL 137 (143)
T ss_pred HhhCCceeeeee
Confidence 568999999853
No 24
>PRK13664 hypothetical protein; Provisional
Probab=38.80 E-value=83 Score=18.49 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=18.9
Q ss_pred HHHHHhHHHHHHHHH--------HhCCCC----ccccCcHHHH
Q 035376 17 AMLTIAGNAQYQIHK--------AAHGRP----KHVGNDMWDV 47 (66)
Q Consensus 17 ~~~~v~G~~~~~i~~--------~~~Gk~----~R~~~D~wd~ 47 (66)
+.+.+.|+..+.|+- |-..|| +|-++|+||.
T Consensus 12 ill~lvG~i~N~iK~l~RvD~Kkfl~nkp~LPPHRD~N~kWDd 54 (62)
T PRK13664 12 VLVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDD 54 (62)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcCCCCCCCCccccccccc
Confidence 344455666776652 344554 3777999984
No 25
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=36.84 E-value=32 Score=25.07 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNAQY 27 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~~~ 27 (66)
+=|..|.|||+++.+|+.+...+
T Consensus 168 ~g~~aPa~GiiGtvlGLI~~l~~ 190 (282)
T TIGR03818 168 VADALPGFGIVAAVLGVVITMGS 190 (282)
T ss_pred HHhhCchhhHHHHHHHHHHHHHh
Confidence 34678999999988887665433
No 26
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=36.58 E-value=54 Score=19.66 Aligned_cols=20 Identities=25% Similarity=0.276 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 035376 11 PLGIIAAMLTIAGNAQYQIH 30 (66)
Q Consensus 11 p~gIi~~~~~v~G~~~~~i~ 30 (66)
-+.++..|.++.|..+|.+-
T Consensus 4 d~iLi~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999886
No 27
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=35.39 E-value=45 Score=20.63 Aligned_cols=17 Identities=6% Similarity=0.268 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHh
Q 035376 6 FEGLLPLGIIAAMLTIA 22 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~ 22 (66)
|-++++||+|.+.|.++
T Consensus 67 WN~~IGfg~~~~Gf~mt 83 (87)
T PF06781_consen 67 WNLAIGFGLMIVGFLMT 83 (87)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46789999998888764
No 28
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=33.70 E-value=50 Score=20.54 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHh
Q 035376 6 FEGLLPLGIIAAMLTIA 22 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~ 22 (66)
|-.+++||+|.+.|.++
T Consensus 67 WN~~IGfg~~~~G~~mt 83 (87)
T PRK02251 67 WNLVIGFGLIMAGFGMT 83 (87)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 46788999998887654
No 29
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=33.45 E-value=66 Score=24.87 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNAQY 27 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~~~ 27 (66)
+||+|+|..|+.+++.+-+.+..
T Consensus 186 sF~~LiP~~i~l~~~~~l~~~~~ 208 (452)
T PRK10297 186 SFSALIPGFIILSIMGIIAWALN 208 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999998888877653
No 30
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=33.42 E-value=73 Score=17.37 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHH-HHHHhHHHHHHHHHH
Q 035376 6 FEGLLPLGIIAA-MLTIAGNAQYQIHKA 32 (66)
Q Consensus 6 fE~Lpp~gIi~~-~~~v~G~~~~~i~~~ 32 (66)
-|..++++.+.+ +|+.+|+.+..+..+
T Consensus 13 ~E~aigl~~~f~~~L~p~gWVLshL~~Y 40 (43)
T cd00930 13 AESAIGLSVFFTTFLLPAGWVLSHLENY 40 (43)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 477777777665 456678888877654
No 31
>PHA00645 hypothetical protein
Probab=32.78 E-value=8.5 Score=25.29 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=24.6
Q ss_pred CcchhhHHHH----HHHHHHHHHHHhHHHHHHHH
Q 035376 1 MSWLIFEGLL----PLGIIAAMLTIAGNAQYQIH 30 (66)
Q Consensus 1 ~~~mwfE~Lp----p~gIi~~~~~v~G~~~~~i~ 30 (66)
|-|||---|| |+.++-++++|.+..++.||
T Consensus 28 mDwmW~lKLP~Tnipl~v~wviggVi~~~~~~i~ 61 (125)
T PHA00645 28 FDVIWNTKLPMTNTSIAYFLVFFMVIKLSIYAIH 61 (125)
T ss_pred HHHHHHccCCCCCCchHHHHHHHHHHHhheeEEc
Confidence 4567766565 78999999999999999998
No 32
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=31.96 E-value=87 Score=19.71 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=10.3
Q ss_pred HHHHHhhhhhhccc
Q 035376 47 VAMERRDKKLVEQL 60 (66)
Q Consensus 47 ~~mm~RD~RLtG~~ 60 (66)
..-+||+.|+++..
T Consensus 51 v~eDER~~~I~ekA 64 (111)
T PF09946_consen 51 VVEDERTERISEKA 64 (111)
T ss_pred chhhHHHHHHHHHH
Confidence 46678898888743
No 33
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=31.78 E-value=1.1e+02 Score=18.29 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 035376 9 LLPLGIIAAMLTIAGNAQYQIHKA 32 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~ 32 (66)
.+|+.|..++.+.+-..+.|..+.
T Consensus 7 ~~plivf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 7 FVPLIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555566555543
No 34
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=31.20 E-value=56 Score=19.07 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCccc----cCcHHHHHHHHhhhhhhc
Q 035376 7 EGLLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHV----GNDMWDVAMERRDKKLVE 58 (66)
Q Consensus 7 E~Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~----~~D~wd~~mm~RD~RLtG 58 (66)
|.+|=++++++ ++.+.+.+.++.+.....-++ +-+.|++.-..+.+++..
T Consensus 5 el~PL~~~vg~--a~~~a~~~~~r~l~~~PdV~~~k~~~~~pw~~~~~~~~~K~~~ 58 (73)
T PF06522_consen 5 ELYPLFVIVGV--AVGGATFYLYRLLLTNPDVRWNKKNRPEPWEKYKPHEQRKFYS 58 (73)
T ss_pred cccchHHHHHH--HHHHHHHHHHHHHhcCCCeEEEecCCcChhhhcCccccEEeec
Confidence 56666665555 444555556665533322222 157888776655555543
No 35
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=30.45 E-value=69 Score=20.42 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHH-H-H---hCCCCcccc
Q 035376 6 FEGLLPLGIIAAMLTIAGNAQYQIH-K-A---AHGRPKHVG 41 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~~~~~i~-~-~---~~Gk~~R~~ 41 (66)
+.++||...+.+.+ +.++.+-.+| . | +.+++.|++
T Consensus 38 ~~~~~~~~~~~~i~-~lA~vQi~VqL~~FLHl~~~~~~~wn 77 (109)
T PRK10582 38 TGAASPAVILGTIL-AMAVVQILVHLVCFLHMNTKSDEGWN 77 (109)
T ss_pred HccCChhHHHHHHH-HHHHHHHHHHHHHHhcccCCcccchH
Confidence 45666655554444 3356788888 3 3 555666766
No 36
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=29.01 E-value=65 Score=20.04 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHh
Q 035376 6 FEGLLPLGIIAAMLTIA 22 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~ 22 (66)
|-.+++||+|.+.|.++
T Consensus 67 WN~~IGFg~~i~G~lmt 83 (87)
T PRK00159 67 WNYAIGFALMITGLLMT 83 (87)
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 46788999998887654
No 37
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=28.98 E-value=80 Score=19.64 Aligned_cols=36 Identities=8% Similarity=-0.031 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHH-H-H---hCCCCccccC
Q 035376 6 FEGLLPLGIIAAMLTIAGNAQYQIH-K-A---AHGRPKHVGN 42 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~~~~~i~-~-~---~~Gk~~R~~~ 42 (66)
+.++||-..+.+.+ +.+..+-.+| . | +.+++.|++.
T Consensus 27 ~~~~~~~~~~~~i~-~~A~iQi~vqL~~FlHl~~~~~~~~n~ 67 (96)
T TIGR02847 27 SGTLSKGLTLVIII-VLAVVQILVHLVFFLHLNTSSEQRWNL 67 (96)
T ss_pred HccCCHhHHHHHHH-HHHHHHHHHHHHHHhhccCccccchHH
Confidence 34555544444333 3366788888 2 3 5566667763
No 38
>PF07441 BofA: SigmaK-factor processing regulatory protein BofA; InterPro: IPR010001 This family contains the sigmaK-factor processing regulatory protein BofA (Bypass-of-forespore protein A) (approximately 80 residues long). During sporulation in Bacillus subtilis, transcription is controlled in the developing sporangium by a cascade of sporulation-specific transcription factors (sigma factors). Following engulfment, processing of sigmaK is inhibited by BofA. It has been suggested that this effect is exerted by alteration of the level of the SpoIVFA protein [].
Probab=28.54 E-value=38 Score=20.17 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhHHHHHH
Q 035376 12 LGIIAAMLTIAGNAQYQ 28 (66)
Q Consensus 12 ~gIi~~~~~v~G~~~~~ 28 (66)
=+.+++.+|+||+..-.
T Consensus 55 t~li~g~lGiPGv~lL~ 71 (78)
T PF07441_consen 55 TALIAGILGIPGVILLI 71 (78)
T ss_pred HHHHHHHcCcHHHHHHH
Confidence 35688899999997544
No 39
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=28.22 E-value=58 Score=19.84 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=10.2
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 035376 15 IAAMLTIAGNAQYQIHKA 32 (66)
Q Consensus 15 i~~~~~v~G~~~~~i~~~ 32 (66)
+|=+|.+.|+......+.
T Consensus 30 LtPlfiisa~lSwkLaK~ 47 (74)
T PF15086_consen 30 LTPLFIISAVLSWKLAKA 47 (74)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 344555666666666544
No 40
>PHA03049 IMV membrane protein; Provisional
Probab=28.19 E-value=91 Score=18.69 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 035376 12 LGIIAAMLTIAGNAQYQIH 30 (66)
Q Consensus 12 ~gIi~~~~~v~G~~~~~i~ 30 (66)
+.++..|.++.|...|.|-
T Consensus 5 ~~l~iICVaIi~lIvYgiY 23 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999886
No 41
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=28.19 E-value=65 Score=17.64 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHH
Q 035376 10 LPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDV 47 (66)
Q Consensus 10 pp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~ 47 (66)
..+.|-+..++++|++.|. .-|-|..--+|.||.
T Consensus 7 ~~i~i~~~lv~~Tgy~iYt----aFGppSk~LrDPfee 40 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYT----AFGPPSKELRDPFEE 40 (43)
T ss_pred HHHHHHHHHHHHHhhhhhh----eeCCCccccCCcccc
Confidence 4455555666677766553 345555556788775
No 42
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=27.85 E-value=62 Score=22.49 Aligned_cols=25 Identities=32% Similarity=0.190 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNAQYQIH 30 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~~~~i~ 30 (66)
|||++. +-+++.+|-.||+.++.++
T Consensus 30 ~~E~~~-ll~~~f~lf~P~~~~d~i~ 54 (183)
T PF11874_consen 30 WWESVL-LLLIAFTLFRPGFWMDMIY 54 (183)
T ss_pred HHHHHH-HHHHHHHHhCchHHHHhcc
Confidence 889876 5567778889999998887
No 43
>PF03021 CM2: Influenza C virus M2 protein; InterPro: IPR004267 This family represents the matrix protein, M2, of Influenza C virus. The M1 protein is the product of a spliced mRNA (see IPR004271 from INTERPRO). Small quantities of the unspliced mRNA are found in the cell additionally encoding the M2 protein.
Probab=27.38 E-value=41 Score=22.10 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHH-----HHHHHhhhhhh
Q 035376 8 GLLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWD-----VAMERRDKKLV 57 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd-----~~mm~RD~RLt 57 (66)
+-+++|||+....+.-+..-.++-|.-|+-.|+.-|-=- -.-||.|-.|+
T Consensus 56 aslglgiitmlyllvkiiielvngfvlgrwerwcgdikttimpeidsmekdials 110 (139)
T PF03021_consen 56 ASLGLGIITMLYLLVKIIIELVNGFVLGRWERWCGDIKTTIMPEIDSMEKDIALS 110 (139)
T ss_pred HhccchHHHHHHHHHHHHHHHhccceechHHHHhccccceeccchhhhhhHhhhh
Confidence 457889999988888887777777766766666543221 12366666555
No 44
>PRK01844 hypothetical protein; Provisional
Probab=27.02 E-value=1.5e+02 Score=17.86 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHH-h-CCCCccccCcHHHHHHHHh
Q 035376 4 LIFEGLLPLGIIAAMLTIAGNAQYQIHKA-A-HGRPKHVGNDMWDVAMERR 52 (66)
Q Consensus 4 mwfE~Lpp~gIi~~~~~v~G~~~~~i~~~-~-~Gk~~R~~~D~wd~~mm~R 52 (66)
.|+-++ ++|++...|+.|.....-+++ + -.+-++.+-|.=..+|++=
T Consensus 3 ~~~~I~--l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir~Mm~QM 51 (72)
T PRK01844 3 IWLGIL--VGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQM 51 (72)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 454444 334444444444333333333 2 2344466655555555543
No 45
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=26.79 E-value=1.5e+02 Score=17.71 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 035376 8 GLLPLGIIAAMLTIAGNAQYQIHKA 32 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~~~~~i~~~ 32 (66)
+++|+-|+.++++.+-..+.|..+.
T Consensus 6 l~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 6 LAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566666666666666666666554
No 46
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=26.58 E-value=55 Score=24.09 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHhHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGN 24 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~ 24 (66)
|=|.+|.|||+++.+|+...
T Consensus 150 ~g~~aPa~GivgaV~GlI~~ 169 (266)
T COG1291 150 AGDYAPAFGIVGAVMGLIHA 169 (266)
T ss_pred HHhhCchhhHHHHHHHHHHH
Confidence 44778999999887776543
No 47
>PF15331 TP53IP5: Cellular tumour antigen p53-inducible 5
Probab=26.32 E-value=17 Score=26.16 Aligned_cols=8 Identities=63% Similarity=1.377 Sum_probs=6.6
Q ss_pred chhhHHHH
Q 035376 3 WLIFEGLL 10 (66)
Q Consensus 3 ~mwfE~Lp 10 (66)
|.|||.||
T Consensus 181 ~~WFEGLP 188 (220)
T PF15331_consen 181 WVWFEGLP 188 (220)
T ss_pred cchhccCC
Confidence 67999887
No 48
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=25.99 E-value=1.6e+02 Score=17.85 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHhCCC
Q 035376 6 FEGLLPLGIIAAMLTIAGNAQYQIHKAAHGR 36 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk 36 (66)
|-+.+|..+..+.++..|.....+=..|.-|
T Consensus 46 yAi~lP~~lll~~~~~vg~f~g~vmik~~~k 76 (78)
T PF07297_consen 46 YAIILPIFLLLLGLSGVGTFLGYVMIKSKKK 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3467777777777777777666655433333
No 49
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=25.93 E-value=57 Score=19.35 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHhHHH
Q 035376 6 FEGLLPLGIIAAMLTIAGNA 25 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~~ 25 (66)
+|.+|+|.+......+.|..
T Consensus 59 ~E~~~~f~~~~~~~~~~g~~ 78 (129)
T PF01124_consen 59 LENLPLFLVAVLLAILTGAS 78 (129)
T ss_dssp HHHHHHHHHHHHHCCCC-T-
T ss_pred HhhHHHHHHHHHHHHHhCCc
Confidence 58899998888777666543
No 50
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.69 E-value=58 Score=23.65 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=14.9
Q ss_pred HHHHHhHHHHHHHHHHhCCC
Q 035376 17 AMLTIAGNAQYQIHKAAHGR 36 (66)
Q Consensus 17 ~~~~v~G~~~~~i~~~~~Gk 36 (66)
..+++.|++++++++...|.
T Consensus 242 ~ll~l~Gii~~~~~r~~~~~ 261 (281)
T PF12768_consen 242 FLLVLIGIILAYIRRRRQGY 261 (281)
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 45778899999999765543
No 51
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=25.31 E-value=1.9e+02 Score=20.21 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHHH
Q 035376 11 PLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDVA 48 (66)
Q Consensus 11 p~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~~ 48 (66)
..|.+++.+++.|.+.-.+++..+ ++.|.....-|+.
T Consensus 91 ~~G~~aGi~~liGl~~Ll~RRl~~-~~vr~~s~~~D~~ 127 (224)
T TIGR00351 91 FAGGASGVLCLIGGVLLLKRRLFS-PRVRATSTGADIL 127 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CcccccCCHHHHH
Confidence 467888899999999888888865 5556666666664
No 52
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=25.26 E-value=76 Score=23.06 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHhHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGN 24 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~ 24 (66)
|=+..|.|||+++.+|+.+.
T Consensus 154 ~g~~APafGmiGTviGLI~m 173 (271)
T PRK06926 154 AGEYAPAWGMIGTLVGLVLM 173 (271)
T ss_pred HHHHchHHHHHHHHHHHHHH
Confidence 34678889988888777654
No 53
>PRK09110 flagellar motor protein MotA; Validated
Probab=25.02 E-value=70 Score=23.33 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNA 25 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~ 25 (66)
+-+..|.||||++.+|+.+..
T Consensus 168 ~g~~aPa~GiiGtv~GLI~~l 188 (283)
T PRK09110 168 VADALPAFGIVAAVLGVVKTM 188 (283)
T ss_pred HHhhCchhHHHHHHHHHHHHH
Confidence 446788999998888775543
No 54
>TIGR00359 cello_pts_IIC phosphotransferase system, cellobiose specific, IIC component. The family consists of the cellobiose specific form of the phosphotransferase system (PTS), IIC component.
Probab=24.91 E-value=1.1e+02 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNAQY 27 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~~~ 27 (66)
+||+|+|..++...+.+-+.+..
T Consensus 175 sF~~liP~~i~i~~~~~i~~~~~ 197 (423)
T TIGR00359 175 SFVALIPGFIILSVMWLINLAIE 197 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999998887777766553
No 55
>TIGR00410 lacE PTS system, lactose/cellobiose family IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family of proteins consists of both the cellobiose specific and the lactose specific forms of the phosphotransferase system (PTS) IIC component. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to the substrate. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.
Probab=24.91 E-value=1.1e+02 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNAQY 27 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~~~ 27 (66)
+||+|+|..++...+.+-+.+..
T Consensus 175 sF~~liP~~i~i~~~~~i~~~~~ 197 (423)
T TIGR00410 175 SFVALIPGFIILSVMWLINLAIE 197 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999998887777766553
No 56
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=24.26 E-value=56 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=18.1
Q ss_pred hCCCCccccCcHHHHHHHHhh
Q 035376 33 AHGRPKHVGNDMWDVAMERRD 53 (66)
Q Consensus 33 ~~Gk~~R~~~D~wd~~mm~RD 53 (66)
.+=|++|++.|.|+..||+|=
T Consensus 302 ~~~K~~rrny~~l~~~~~~r~ 322 (707)
T KOG0957|consen 302 DNLKPYRRNYDDLEKSEARRI 322 (707)
T ss_pred hhhhhhhhhhHHHHHHHHHHH
Confidence 456899999999999999874
No 57
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=24.18 E-value=2.1e+02 Score=18.44 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCCCcccc
Q 035376 9 LLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVG 41 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~ 41 (66)
+.|-+++.+++...-++-..+.+.--|||.=|-
T Consensus 53 ~~pt~~ll~~~~~v~~gg~~l~rlKRGKP~~yl 85 (121)
T PF11990_consen 53 MIPTGALLGPILGVFVGGKLLARLKRGKPEGYL 85 (121)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHcCCchhHH
Confidence 445555555555555555666777677775443
No 58
>PRK12482 flagellar motor protein MotA; Provisional
Probab=24.14 E-value=84 Score=23.11 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNAQ 26 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~~ 26 (66)
|=+..|.|||+++.+|+.....
T Consensus 168 ~a~~aPa~GiiGtvlGLI~mL~ 189 (287)
T PRK12482 168 IAEAMPGFGICAAVLGIIITMQ 189 (287)
T ss_pred HHHHchHHHHHHHHHHHHHHHH
Confidence 4467899999998887766543
No 59
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=23.70 E-value=66 Score=19.53 Aligned_cols=21 Identities=14% Similarity=-0.065 Sum_probs=17.0
Q ss_pred chhhHHHHHHHHHHHHHHHhHH
Q 035376 3 WLIFEGLLPLGIIAAMLTIAGN 24 (66)
Q Consensus 3 ~mwfE~Lpp~gIi~~~~~v~G~ 24 (66)
+=|+|.|+-+.|+.+.|| |.=
T Consensus 4 ig~~elliIlvV~lllfG-pkK 24 (94)
T COG1826 4 IGWSELLIILVVALLVFG-PKK 24 (94)
T ss_pred CCHHHHHHHHHHHHHhcC-cch
Confidence 348999999999999998 433
No 60
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=23.68 E-value=1.5e+02 Score=22.44 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH--HHhC-CCCccccCcHHHHHHH
Q 035376 7 EGLLPLGIIAAMLTIAGNAQYQIH--KAAH-GRPKHVGNDMWDVAME 50 (66)
Q Consensus 7 E~Lpp~gIi~~~~~v~G~~~~~i~--~~~~-Gk~~R~~~D~wd~~mm 50 (66)
|.-|.++|+.+.++++|-+.-+.. +.|. +|..=.+.|.=+|.|.
T Consensus 121 ~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Ms 167 (314)
T COG3965 121 EVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMS 167 (314)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHH
Confidence 556889999999999998887777 3344 5666778888888874
No 61
>PTZ00250 variable surface protein Vir23; Provisional
Probab=23.43 E-value=54 Score=24.83 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q 035376 7 EGLLPLGIIAAMLTI 21 (66)
Q Consensus 7 E~Lpp~gIi~~~~~v 21 (66)
-+|++.+||+|++.+
T Consensus 276 ~~~~~~~~~~~~~~~ 290 (350)
T PTZ00250 276 NILLKVAIISAPFLA 290 (350)
T ss_pred HHHHhhhhhhhhHHH
Confidence 368888888877655
No 62
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.34 E-value=1e+02 Score=18.05 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 035376 7 EGLLPLGIIAAMLTIAGNAQ 26 (66)
Q Consensus 7 E~Lpp~gIi~~~~~v~G~~~ 26 (66)
|...+||+++...|+.++..
T Consensus 34 ~~~~~yg~~al~~Gv~~fV~ 53 (62)
T PF11177_consen 34 ERVFRYGVIALVVGVAGFVV 53 (62)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 45678999999888877654
No 63
>PRK10557 hypothetical protein; Provisional
Probab=22.95 E-value=1.5e+02 Score=20.15 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHhCC--CCccccCcHHH-HHHHHhhhhhhccccC
Q 035376 6 FEGLLPLGIIAAMLTIAGNAQYQIHKAAHG--RPKHVGNDMWD-VAMERRDKKLVEQLSG 62 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~~~~~i~~~~~G--k~~R~~~D~wd-~~mm~RD~RLtG~~r~ 62 (66)
.|.|+.++|....+.+.+..+..+++.+.- +..+...+.+. -.+++||-|-.|-..+
T Consensus 12 iElmIAm~Ig~illl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~dirrAGy~~~ 71 (192)
T PRK10557 12 LEVLLAMAIGSVLLLGAARFLPALQRQILTLTRQLRLEDEIWQRVFTVEKDLRRAGYCHG 71 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 588988888887777766666666644221 11222222233 3579999999986544
No 64
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=22.81 E-value=1.4e+02 Score=16.13 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhHH
Q 035376 8 GLLPLGIIAAMLTIAGN 24 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~ 24 (66)
+|+|.+++.+++++...
T Consensus 5 ~lip~sl~l~~~~l~~f 21 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAF 21 (45)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788777776655443
No 65
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=22.74 E-value=1.6e+02 Score=16.66 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 035376 8 GLLPLGIIAAMLTIAGNAQYQIHKA 32 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~~~~~i~~~ 32 (66)
.+.+++|...+|.+-......+.++
T Consensus 8 ~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 8 MIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888866
No 66
>KOG3188 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.73 E-value=3e+02 Score=20.11 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCCCc--cccCcHHHHHHHHhhhhhhcc
Q 035376 8 GLLPLGIIAAMLTIAGNAQYQIHKAAHGRPK--HVGNDMWDVAMERRDKKLVEQ 59 (66)
Q Consensus 8 ~Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~--R~~~D~wd~~mm~RD~RLtG~ 59 (66)
.|+|+.|+++ +.|+.-.++-..-.+++| --... |.+...|-+-|-++
T Consensus 15 VlLPI~ivm~---liGilRhyvsiLl~s~kk~~~~~v~--e~q~l~rAr~Lr~n 63 (246)
T KOG3188|consen 15 VLLPIVIVMF---LIGILRHYVSILLQSSKKLEQEQVK--EGQYLIRARLLREN 63 (246)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHhcCCcccHHHhh--hhHHHHHHHHHHhc
Confidence 5888888887 456666677755444444 22234 55555555555443
No 67
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=22.10 E-value=24 Score=23.05 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=14.2
Q ss_pred HHhCCCCccc-------cCcHHHHHH
Q 035376 31 KAAHGRPKHV-------GNDMWDVAM 49 (66)
Q Consensus 31 ~~~~Gk~~R~-------~~D~wd~~m 49 (66)
+|.+|||.-. +-+.|||-|
T Consensus 75 KFvnGkp~~iEa~y~m~s~~~WdRFM 100 (113)
T PRK13610 75 SISEDHVKEVKSTYNWNSEEAFERFM 100 (113)
T ss_pred EEEcCCccEEEEEEEECCHHHHHHHH
Confidence 4678888743 468999987
No 68
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=21.70 E-value=99 Score=23.41 Aligned_cols=18 Identities=22% Similarity=0.047 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 035376 10 LPLGIIAAMLTIAGNAQY 27 (66)
Q Consensus 10 pp~gIi~~~~~v~G~~~~ 27 (66)
+-++||++.||+|+..+-
T Consensus 318 lvi~i~~vgLG~P~l~li 335 (350)
T PF15065_consen 318 LVIMIMAVGLGVPLLLLI 335 (350)
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 446788888999988553
No 69
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=21.41 E-value=1e+02 Score=19.61 Aligned_cols=25 Identities=12% Similarity=-0.044 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhHHHHHHHH-HHhCCC
Q 035376 12 LGIIAAMLTIAGNAQYQIH-KAAHGR 36 (66)
Q Consensus 12 ~gIi~~~~~v~G~~~~~i~-~~~~Gk 36 (66)
++|+++++++.++..-.|+ +++-|.
T Consensus 26 ~~i~~~~v~~~t~~~l~iYp~f~~gW 51 (97)
T PF04834_consen 26 YAIGIVLVFCSTFFSLAIYPCFDFGW 51 (97)
T ss_pred HHHHHHHHHHHHHHHHhhhheeeccc
Confidence 5566666666666666666 555553
No 70
>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane [].; PDB: 2CIU_A.
Probab=21.24 E-value=32 Score=22.72 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 035376 11 PLGIIAAMLTIAGNAQYQIH 30 (66)
Q Consensus 11 p~gIi~~~~~v~G~~~~~i~ 30 (66)
-++||.+.++++|.+.|.+-
T Consensus 11 ~~~vil~G~gl~g~v~Y~l~ 30 (145)
T PF08294_consen 11 YFGVILAGLGLTGLVIYALF 30 (145)
T ss_dssp --------------------
T ss_pred eeEeeeehHHHHHHhHHHHh
Confidence 46888899999999988886
No 71
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=21.22 E-value=1e+02 Score=16.47 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 035376 9 LLPLGIIAAMLTIAGNAQYQI 29 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i 29 (66)
+.-.+++++.||..|.+-...
T Consensus 3 FliiAliAg~lGF~Giag~a~ 23 (39)
T PF07043_consen 3 FLIIALIAGVLGFGGIAGTAA 23 (39)
T ss_pred hHHHHHHHHHcCcccHHHHHH
Confidence 445788999999888765544
No 72
>KOG4617 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.16 E-value=1.9e+02 Score=21.15 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCCCcccc
Q 035376 10 LPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVG 41 (66)
Q Consensus 10 pp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~ 41 (66)
+|.-+-.++..+-|++.+..-...+|.|+|.-
T Consensus 196 i~~~~~~i~~LlL~a~fyl~s~~~~e~~~Rkl 227 (249)
T KOG4617|consen 196 ISARTEKIANLLLGAGFYLLSESSDEEPPRKL 227 (249)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCccee
Confidence 44455556677788888888888888888753
No 73
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=20.73 E-value=1.1e+02 Score=18.93 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=20.4
Q ss_pred CcchhhHHHHHHHHHHHHHH---HhHHHHHH
Q 035376 1 MSWLIFEGLLPLGIIAAMLT---IAGNAQYQ 28 (66)
Q Consensus 1 ~~~mwfE~Lpp~gIi~~~~~---v~G~~~~~ 28 (66)
|++=|+|+++=+.|..+.|| +|..+-..
T Consensus 1 m~ig~~ElliI~vI~lllFGp~KLP~~~r~l 31 (84)
T PRK00191 1 MSLGPWEIGIIVLLIIVLFGAKKLPDAARSI 31 (84)
T ss_pred CCCcHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 66678899998888888888 45554433
No 74
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=20.55 E-value=1.2e+02 Score=20.21 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNAQYQIH 30 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~~~~i~ 30 (66)
++=+|..|++...-+.++|-...+||
T Consensus 3 r~liL~~~~~l~~~l~~sG~i~~YI~ 28 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSGKILLYIH 28 (182)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhC
Confidence 44567777777777777777777776
No 75
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=20.18 E-value=1.2e+02 Score=17.62 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 035376 13 GIIAAMLTIAGNAQYQIH 30 (66)
Q Consensus 13 gIi~~~~~v~G~~~~~i~ 30 (66)
+++.+++++.|.++|-|-
T Consensus 9 ~~~ggfVg~iG~a~Ypi~ 26 (58)
T PF15061_consen 9 LFVGGFVGLIGAALYPIY 26 (58)
T ss_pred hhHHHHHHHHHHHHhhhh
Confidence 466777888999988775
No 76
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=20.12 E-value=2.5e+02 Score=17.98 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHH---hCCCCc
Q 035376 12 LGIIAAMLTIAGNAQYQIHKA---AHGRPK 38 (66)
Q Consensus 12 ~gIi~~~~~v~G~~~~~i~~~---~~Gk~~ 38 (66)
+|++.+..++-+++...++.| .+||.+
T Consensus 46 lgL~i~a~aFi~Va~~a~~ty~Ei~~Gk~~ 75 (104)
T TIGR03745 46 LGLLIAAIAFIGVAYHALGTYHEIRTGKAT 75 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 444555555556666666666 446543
No 77
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=20.07 E-value=2.2e+02 Score=17.48 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHH
Q 035376 6 FEGLLPLGIIAAMLTIAGNAQYQIHK 31 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~~~~~i~~ 31 (66)
+|+|+.+||.+. +....+..+++
T Consensus 3 LEsLiAlall~~---IvsLiL~~i~~ 25 (82)
T PF11773_consen 3 LESLIALALLAT---IVSLILGQIQQ 25 (82)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHH
Confidence 589998888776 55566666663
Done!