Query 035376
Match_columns 66
No_of_seqs 102 out of 148
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_D Cytochrome C oxidase su 88.6 1.8 6.3E-05 28.2 6.4 47 9-55 79-125 (147)
2 2y69_D Cytochrome C oxidase su 86.9 2.5 8.7E-05 28.1 6.4 47 9-55 101-147 (169)
3 1v54_M VIIIB, IX, cytochrome C 78.8 3.4 0.00012 22.2 3.7 28 5-32 12-40 (46)
4 2y69_M Cytochrome C oxidase po 73.3 5.1 0.00017 23.3 3.7 27 6-32 37-64 (70)
5 3dww_A Prostaglandin E synthas 27.8 26 0.0009 22.3 1.5 19 6-24 82-100 (158)
6 2kvo_A Photosystem II reaction 25.9 7.9 0.00027 24.6 -1.2 22 31-52 69-99 (120)
7 2o3a_A UPF0106 protein AF_0751 19.2 26 0.0009 23.5 0.2 8 51-58 15-22 (178)
8 3qnq_A PTS system, cellobiose- 19.0 1E+02 0.0035 22.5 3.4 22 5-26 183-204 (442)
9 2yy8_A ATRM56, UPF0106 protein 16.1 30 0.001 23.7 -0.1 8 51-58 12-19 (201)
10 2klu_A T-cell surface glycopro 16.0 1.3E+02 0.0046 17.2 2.7 27 4-30 6-33 (70)
No 1
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=88.58 E-value=1.8 Score=28.19 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHHHHHHhhhh
Q 035376 9 LLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDVAMERRDKK 55 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~~mm~RD~R 55 (66)
-+-+|.+..++++++.....++.+.++.+++--.+.|+....+|=..
T Consensus 79 K~v~g~v~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erm~~ 125 (147)
T 1v54_D 79 KTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLD 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHH
Confidence 44577777888888888888999988888888899999888877444
No 2
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.89 E-value=2.5 Score=28.15 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHHHHHHhhhh
Q 035376 9 LLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDVAMERRDKK 55 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~~mm~RD~R 55 (66)
-+-+|.+..++++++.....++.+.++.+++--.+.|+....+|=..
T Consensus 101 K~V~ggv~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erml~ 147 (169)
T 2y69_D 101 KTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLD 147 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHH
Confidence 34577777888888888888999988888888899999888877444
No 3
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=78.78 E-value=3.4 Score=22.21 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHh-HHHHHHHHHH
Q 035376 5 IFEGLLPLGIIAAMLTIA-GNAQYQIHKA 32 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~-G~~~~~i~~~ 32 (66)
.-|...++.+++++|-+| |+.+..+..|
T Consensus 12 ~~E~aigl~v~f~~~L~PagWVLshL~~Y 40 (46)
T 1v54_M 12 PKEQAIGLSVTFLSFLLPAGWVLYHLDNY 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 358888999999888887 9999888865
No 4
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.27 E-value=5.1 Score=23.27 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHh-HHHHHHHHHH
Q 035376 6 FEGLLPLGIIAAMLTIA-GNAQYQIHKA 32 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~-G~~~~~i~~~ 32 (66)
-|..+++.+++++|-+| |+.++.+..|
T Consensus 37 ~E~aigltv~f~~~L~PagWVLshLe~Y 64 (70)
T 2y69_M 37 KEQAIGLSVTFLSFLLPAGWVLYHLDNY 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 58888999999988888 9999988866
No 5
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle, isomerase, membrane, transmembrane; HET: GSH; 3.50A {Homo sapiens}
Probab=27.81 E-value=26 Score=22.28 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHhHH
Q 035376 6 FEGLLPLGIIAAMLTIAGN 24 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~ 24 (66)
+|.+|+|.+...+..+.|.
T Consensus 82 lE~~p~Fl~~~ll~~l~g~ 100 (158)
T 3dww_A 82 METIYPFLFLGFVYSFLGP 100 (158)
T ss_dssp HHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 6999999988887776544
No 6
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=25.87 E-value=7.9 Score=24.57 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=15.3
Q ss_pred HHhCCCCccc-------cCcHHHHHH--HHh
Q 035376 31 KAAHGRPKHV-------GNDMWDVAM--ERR 52 (66)
Q Consensus 31 ~~~~Gk~~R~-------~~D~wd~~m--m~R 52 (66)
+|.+|||... +-+.|||-| |+|
T Consensus 69 KFvnGkp~~iEa~y~m~s~~~WdRFMRFMeR 99 (120)
T 2kvo_A 69 KFINGRPTAIEATVILNSQPEWDRFMRFMER 99 (120)
T ss_dssp EEETTEEEEEEEEEEECSSHHHHHHHHHHHH
T ss_pred EEECCceeEEEEEEEECCHHHHHHHHHHHHH
Confidence 3457787754 468999987 555
No 7
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=19.20 E-value=26 Score=23.53 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=5.1
Q ss_pred Hhhhhhhc
Q 035376 51 RRDKKLVE 58 (66)
Q Consensus 51 ~RD~RLtG 58 (66)
+||+|+|-
T Consensus 15 ~RDkRiTT 22 (178)
T 2o3a_A 15 ERDKRIST 22 (178)
T ss_dssp --CHHHHH
T ss_pred ccccchhh
Confidence 69999984
No 8
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=18.96 E-value=1e+02 Score=22.52 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNAQ 26 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~~ 26 (66)
+|++|+|..++...+.+-....
T Consensus 183 sF~~liP~~i~~~~~~~i~~~~ 204 (442)
T 3qnq_A 183 SFAALIPGFIVVTVVWIIRLIF 204 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999988887776655443
No 9
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=16.13 E-value=30 Score=23.66 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=5.7
Q ss_pred Hhhhhhhc
Q 035376 51 RRDKKLVE 58 (66)
Q Consensus 51 ~RD~RLtG 58 (66)
+||+|+|-
T Consensus 12 ~RDkRiTT 19 (201)
T 2yy8_A 12 ERDKRVTT 19 (201)
T ss_dssp C-CTHHHH
T ss_pred ccccchhh
Confidence 69999984
No 10
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=15.96 E-value=1.3e+02 Score=17.18 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHH-HHH
Q 035376 4 LIFEGLLPLGIIAAMLTIAGNAQY-QIH 30 (66)
Q Consensus 4 mwfE~Lpp~gIi~~~~~v~G~~~~-~i~ 30 (66)
-|..+|+.+|-++.++.+.|.... .++
T Consensus 6 ~~p~~LivlGg~~~lll~~glcI~ccvk 33 (70)
T 2klu_A 6 RGSMALIVLGGVAGLLLFIGLGIFFSVR 33 (70)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 366777888888888888888777 443
Done!