Query 035376
Match_columns 66
No_of_seqs 102 out of 148
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 03:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035376.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035376hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 89.3 0.72 5.3E-05 28.5 6.4 47 9-55 76-122 (144)
2 d2h8aa1 f.56.1.1 (A:9-147) Mic 21.1 12 0.00085 21.7 0.4 19 6-24 71-89 (139)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 19.2 46 0.0033 15.1 3.8 16 6-21 7-22 (32)
4 d1y5ic1 f.21.3.1 (C:1-225) Res 18.9 79 0.0058 19.0 4.2 38 9-47 90-127 (225)
5 d1l7va_ f.22.1.1 (A:) ABC tran 17.9 14 0.001 24.3 0.3 19 5-25 300-318 (324)
6 d2o3aa1 c.116.1.8 (A:1-167) Un 15.9 16 0.0012 22.7 0.2 8 51-58 13-20 (167)
7 d1v54m_ f.23.7.1 (M:) Mitochon 15.6 68 0.0049 15.5 2.9 26 6-31 13-39 (43)
8 d1prtf_ b.40.2.1 (F:) Pertussi 13.6 62 0.0045 17.9 2.3 15 4-18 50-64 (98)
9 d3proc1 d.52.1.1 (C:6-85) Alph 12.9 23 0.0017 19.3 0.3 11 49-59 6-16 (80)
10 d1v54g_ f.23.2.1 (G:) Mitochon 12.9 57 0.0041 17.8 2.0 19 14-32 18-36 (84)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=89.32 E-value=0.72 Score=28.51 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHHHHHHhhhh
Q 035376 9 LLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDVAMERRDKK 55 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~~mm~RD~R 55 (66)
-.-+|.+..++++++.....++.+.++.+++--.+.|+..+.+|=..
T Consensus 76 K~v~g~~~~~i~~s~~i~~~~r~~v~p~~P~T~~~Ewqeaq~erm~~ 122 (144)
T d1v54d_ 76 KTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLD 122 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 34567777788888888889999999988888899999998887443
No 2
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.10 E-value=12 Score=21.66 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHhHH
Q 035376 6 FEGLLPLGIIAAMLTIAGN 24 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v~G~ 24 (66)
+|.+|||.+++.+..++|.
T Consensus 71 ~E~~~~F~~~~l~~~~~~~ 89 (139)
T d2h8aa1 71 LENIVPFLGIGLLYSLSGP 89 (139)
T ss_dssp HHTTHHHHHHHHHTTTSCC
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 6999999988877766654
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.15 E-value=46 Score=15.10 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 035376 6 FEGLLPLGIIAAMLTI 21 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v 21 (66)
.-++++||+|.+.-++
T Consensus 7 ~aa~lsfglifvgwgl 22 (32)
T d2e74f1 7 YAALLSFGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhHH
Confidence 4578899998876654
No 4
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=18.88 E-value=79 Score=18.97 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCCCccccCcHHHH
Q 035376 9 LLPLGIIAAMLTIAGNAQYQIHKAAHGRPKHVGNDMWDV 47 (66)
Q Consensus 9 Lpp~gIi~~~~~v~G~~~~~i~~~~~Gk~~R~~~D~wd~ 47 (66)
..++|.+++.+++.|.+.-..+++.. |+.|.....=|.
T Consensus 90 ~~~~g~i~g~l~liG~~~ll~RR~~~-~~~r~~~~~~d~ 127 (225)
T d1y5ic1 90 AMFAGGASGVLCLIGGVLLLKRRLFS-PRVRATTTGADI 127 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CcccccCcHHHH
Confidence 45677888899999999988888754 555666555444
No 5
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=17.87 E-value=14 Score=24.26 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHH
Q 035376 5 IFEGLLPLGIIAAMLTIAGNA 25 (66)
Q Consensus 5 wfE~Lpp~gIi~~~~~v~G~~ 25 (66)
|+| +|.|++++.+|.|=..
T Consensus 300 p~e--iPvGvitaliG~P~fi 318 (324)
T d1l7va_ 300 AAE--LPIGVVTATLGAPVFI 318 (324)
T ss_dssp SSC--CCHHHHHHHHHHHHHH
T ss_pred ccc--chHHHHHHHHHHHHHH
Confidence 566 6999999999998554
No 6
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.86 E-value=16 Score=22.66 Aligned_cols=8 Identities=38% Similarity=0.725 Sum_probs=5.1
Q ss_pred Hhhhhhhc
Q 035376 51 RRDKKLVE 58 (66)
Q Consensus 51 ~RD~RLtG 58 (66)
+||+|+|-
T Consensus 13 ~RD~RiTT 20 (167)
T d2o3aa1 13 ERDKRIST 20 (167)
T ss_dssp --CHHHHH
T ss_pred ccCcchhh
Confidence 69999984
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.65 E-value=68 Score=15.52 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHH-hHHHHHHHHH
Q 035376 6 FEGLLPLGIIAAMLTI-AGNAQYQIHK 31 (66)
Q Consensus 6 fE~Lpp~gIi~~~~~v-~G~~~~~i~~ 31 (66)
-|..+++.++.++|-+ +|+.++++..
T Consensus 13 ~E~aigLt~~f~~~L~PaGwVLshLe~ 39 (43)
T d1v54m_ 13 KEQAIGLSVTFLSFLLPAGWVLYHLDN 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 4778888887766554 5777777653
No 8
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=13.57 E-value=62 Score=17.86 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHH
Q 035376 4 LIFEGLLPLGIIAAM 18 (66)
Q Consensus 4 mwfE~Lpp~gIi~~~ 18 (66)
.||..+++|+|-+-.
T Consensus 50 twfdtmlgfaisaya 64 (98)
T d1prtf_ 50 TWFDTMLGFAISAYA 64 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 599999999886543
No 9
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=12.90 E-value=23 Score=19.35 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=8.8
Q ss_pred HHHhhhhhhcc
Q 035376 49 MERRDKKLVEQ 59 (66)
Q Consensus 49 mm~RD~RLtG~ 59 (66)
-|+||..||-.
T Consensus 6 AmqRDLgLt~~ 16 (80)
T d3proc1 6 AMQRDLGIFPT 16 (80)
T ss_dssp HHHHHHCCCGG
T ss_pred HHHHHcCCCHH
Confidence 48999998864
No 10
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.86 E-value=57 Score=17.76 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=15.1
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 035376 14 IIAAMLTIAGNAQYQIHKA 32 (66)
Q Consensus 14 Ii~~~~~v~G~~~~~i~~~ 32 (66)
.|+.+.++|++++..++.+
T Consensus 18 kis~~va~P~i~l~~~n~~ 36 (84)
T d1v54g_ 18 FLTFGLALPSVALCTLNSW 36 (84)
T ss_dssp HHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677778899998888855
Done!