BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035377
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y1H|A Chain A, Crystal Structure Of The Human Tatd-Domain Protein 3
          (Tatdn3)
 pdb|2Y1H|B Chain B, Crystal Structure Of The Human Tatd-Domain Protein 3
          (Tatdn3)
          Length = 272

 Score = 31.2 bits (69), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCF 61
          L D HCHL  P        ++     + V+          ++  +  +SER+   V+PC 
Sbjct: 6  LVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCL 65

Query: 62 GVHP 65
          GVHP
Sbjct: 66 GVHP 69


>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia
          Coli K12, At 1.8 A Resolution
          Length = 259

 Score = 28.5 bits (62), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%)

Query: 2  KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCF 61
          +  D HCH   P         +     +GV    V     E++  V  ++E +  +    
Sbjct: 4  RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAAL 63

Query: 62 GVHP 65
          G+HP
Sbjct: 64 GLHP 67


>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease
          (tm0667) From Thermotoga Maritima At 1.8 A Resolution
          Length = 268

 Score = 25.4 bits (54), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 5  DAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN-GVSEEDWNLVKDMSERHPSVIPCFGV 63
          D H HL   + F      + ++     + F VN GV+ ED     D+S+    +    GV
Sbjct: 15 DTHAHLHFHQ-FDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGV 73

Query: 64 HP 65
          HP
Sbjct: 74 HP 75


>pdb|2KW8|A Chain A, Solution Structure Of Bacillus Anthracis Sortase A (Srta)
           Transpeptidase
          Length = 158

 Score = 25.4 bits (54), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 28  NSGVLHFAVNGVSE---EDWNLVKDMSERHPSVIPCFGVH 64
           N     +AV GVSE   + W +V+D  +   ++I C  V 
Sbjct: 100 NENEYEYAVTGVSEVTPDKWEVVEDHGKDEITLITCVSVK 139


>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
           Mechanism Relying On The Tetx Monooxygenase
 pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
           Mechanism Relying On The Tetx Monooxygenase
 pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
           Mechanism Relying On The Tetx Monooxygenase
 pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
           Mechanism Relying On The Tetx Monooxygenase
          Length = 399

 Score = 25.4 bits (54), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 17  HKAPQLIATTVNSGVLHFAVNGVSEEDW 44
           H+   L A   N+G LHF ++  + ++W
Sbjct: 229 HQGNLLFANPNNNGALHFGISFKTPDEW 256


>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
           Complex With Minocycline
 pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
           Complex With Minocycline
 pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
           Complex With Minocycline
 pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
           Complex With Minocycline
 pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
           Complex With Tigecycline
 pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
           Complex With Tigecycline
 pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
           Complex With Tigecycline
 pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
           Complex With Tigecycline
          Length = 378

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 17  HKAPQLIATTVNSGVLHFAVNGVSEEDW 44
           H+   L A   N+G LHF ++  + ++W
Sbjct: 208 HQGNLLFANPNNNGALHFGISFKTPDEW 235


>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
           In Complex With Tigecycline
          Length = 398

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 17  HKAPQLIATTVNSGVLHFAVNGVSEEDW 44
           H+   L A   N+G LHF ++  + ++W
Sbjct: 228 HQGNLLFANPNNNGALHFGISFKTPDEW 255


>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
           Thetaiotaomicron With Substrate Analogue
 pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
           Thetaiotaomicron With Substrate Analogue
 pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
           Thetaiotaomicron With Substrate Analogue
 pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
           Thetaiotaomicron With Substrate Analogue
          Length = 378

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 17  HKAPQLIATTVNSGVLHFAVNGVSEEDW 44
           H+   L A   N+G LHF ++  + ++W
Sbjct: 208 HQGNLLFANPNNNGALHFGISFKTPDEW 235


>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
           Substrate 7-Chlortetracycline
 pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
           Substrate 7-Chlortetracycline
 pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
           Substrate 7-Chlortetracycline
 pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
           Substrate 7-Chlortetracycline
          Length = 398

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 17  HKAPQLIATTVNSGVLHFAVNGVSEEDW 44
           H+   L A   N+G LHF ++  + ++W
Sbjct: 228 HQGNLLFANPNNNGALHFGISFKTPDEW 255


>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
           Tetx2 From Bacteroides Thetaiotaomicron
 pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
           Tetx2 From Bacteroides Thetaiotaomicron
 pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
           Tetx2 From Bacteroides Thetaiotaomicron
 pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
           Tetx2 From Bacteroides Thetaiotaomicron
 pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
           Substrate 7-Iodtetracycline
 pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
           Substrate 7-Iodtetracycline
 pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
           Substrate 7-Iodtetracycline
 pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
           Substrate 7-Iodtetracycline
 pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
           In Complex With Tigecycline
 pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
           In Complex With Tigecycline
 pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
           In Complex With Tigecycline
 pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
           In Complex With Minocycline
 pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
           In Complex With Minocycline
 pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
           In Complex With Minocycline
 pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
           In Complex With Minocycline
          Length = 398

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 17  HKAPQLIATTVNSGVLHFAVNGVSEEDW 44
           H+   L A   N+G LHF ++  + ++W
Sbjct: 228 HQGNLLFANPNNNGALHFGISFKTPDEW 255


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,054,812
Number of Sequences: 62578
Number of extensions: 64249
Number of successful extensions: 249
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 10
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)