BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035377
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41890|SCN1_SCHPO Cut9-interacting protein scn1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scn1 PE=4 SV=2
Length = 335
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP-SVIPCF 61
+ DAHCH D APQ + N V V G D V+ +++ +P VIP F
Sbjct: 4 IIDAHCHPTD------APQELHLVANLSVGKLIVMGTRPTDQKYVEQLAKEYPGKVIPSF 57
Query: 62 GVHPW 66
G+HPW
Sbjct: 58 GIHPW 62
>sp|A1A4M4|TATD3_BOVIN Putative deoxyribonuclease TATDN3 OS=Bos taurus GN=TATDN3 PE=2
SV=1
Length = 273
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCF 61
L D HCHL P H ++ + V+ V ++ + +S+R+ V+PC
Sbjct: 8 LVDCHCHLSAPDFDHDLDDVLKKAKEANVMALVVVAEHSGEFEKIMQLSQRYNGFVLPCL 67
Query: 62 GVHP 65
GVHP
Sbjct: 68 GVHP 71
>sp|Q05AV0|TAT3A_XENLA Putative deoxyribonuclease tatdn3-A OS=Xenopus laevis GN=tatdn3-a
PE=2 SV=1
Length = 270
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 5 DAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVK--DMSERHPS-VIPCF 61
D HCH+ ++I + +G+ A+ V+E K +S+R+P ++PCF
Sbjct: 7 DCHCHMTAEEFSQDTEEVIEESKENGIQ--ALISVTEHGGEFEKLIYLSDRYPDYIMPCF 64
Query: 62 GVHP 65
G+HP
Sbjct: 65 GIHP 68
>sp|Q3U1C6|TATD3_MOUSE Putative deoxyribonuclease TATDN3 OS=Mus musculus GN=Tatdn3 PE=2
SV=1
Length = 294
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIP 59
+ L D HCHL + ++ + V+ ++ + +SER+ V+P
Sbjct: 3 LGLVDCHCHLSASDFDNDLDDVLEKARKANVMALVAVAEHAGEFERIMQLSERYNGFVLP 62
Query: 60 CFGVHP 65
C GVHP
Sbjct: 63 CLGVHP 68
>sp|Q503T5|TATD3_DANRE Putative deoxyribonuclease tatdn3 OS=Danio rerio GN=tatdn3 PE=2
SV=1
Length = 266
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCF 61
D HCH+ ++ +GV ++ V +S+ +P V PCF
Sbjct: 5 FIDCHCHISASEFTTDTDDVLLRAKKAGVKALVAVTEGASEFEKVIQLSKTYPGFVFPCF 64
Query: 62 GVHP 65
G+HP
Sbjct: 65 GIHP 68
>sp|Q17R31|TATD3_HUMAN Putative deoxyribonuclease TATDN3 OS=Homo sapiens GN=TATDN3 PE=1
SV=1
Length = 274
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCF 61
L D HCHL P ++ + V+ ++ + +SER+ V+PC
Sbjct: 8 LVDCHCHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCL 67
Query: 62 GVHP 65
GVHP
Sbjct: 68 GVHP 71
>sp|P38430|YM8C_YEAST Uncharacterized deoxyribonuclease YMR262W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YMR262W PE=1
SV=3
Length = 313
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 2 KLFDAHCH-LQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS---V 57
KL DAHCH + DP + G L V + DWN +K ++ R S +
Sbjct: 3 KLVDAHCHVITDPDNTFCGDD----GGSQGTLR-CVMSSNPYDWNNLKKLAGRSTSKNDI 57
Query: 58 IPCFGVHPW 66
FGVHPW
Sbjct: 58 CVGFGVHPW 66
>sp|P78005|Y009_MYCPN Uncharacterized deoxyribonuclease MG009 homolog OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=MPN_009 PE=3
SV=1
Length = 261
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
M+ FDAHCHL + + + +A G L V G + + + +++++HP ++
Sbjct: 1 MEYFDAHCHLNCEPLLEQHEKSLANFRLIG-LKANVVGTNLTNSQIAVNLAKQHPDLLKA 59
Query: 61 -FGVHP 65
G+HP
Sbjct: 60 GVGIHP 65
>sp|P47255|Y009_MYCGE Uncharacterized deoxyribonuclease MG009 OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=MG009 PE=3
SV=1
Length = 262
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN--GVSEEDWNLVKDMSERHPSVI 58
M+ FDAHCHL + + + IA N +++ N G ++ + ++++++P ++
Sbjct: 1 MEYFDAHCHLNCEPLLSEIEKSIA---NFKLINLKANVVGTDLDNSKIAVELAKKYPDLL 57
Query: 59 PC-FGVHP 65
G+HP
Sbjct: 58 KATIGIHP 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,852,919
Number of Sequences: 539616
Number of extensions: 755678
Number of successful extensions: 3097
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3092
Number of HSP's gapped (non-prelim): 13
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)