Query 035377
Match_columns 66
No_of_seqs 174 out of 1066
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10812 putative DNAse; Provi 99.9 5.3E-24 1.1E-28 132.2 8.4 66 1-66 1-69 (265)
2 COG0084 TatD Mg-dependent DNas 99.9 6.1E-24 1.3E-28 131.5 8.1 66 1-66 1-66 (256)
3 PRK11449 putative deoxyribonuc 99.9 6.7E-23 1.4E-27 126.8 8.2 66 1-66 3-68 (258)
4 PRK10425 DNase TatD; Provision 99.9 1.9E-22 4.2E-27 124.9 7.8 64 3-66 1-64 (258)
5 PF01026 TatD_DNase: TatD rela 99.8 9.3E-19 2E-23 107.8 6.5 63 4-66 1-64 (255)
6 TIGR00010 hydrolase, TatD fami 99.7 1.5E-16 3.2E-21 96.4 7.9 64 3-66 1-64 (252)
7 cd01310 TatD_DNAse TatD like p 99.7 6.6E-16 1.4E-20 93.5 7.6 64 3-66 1-64 (251)
8 KOG3020 TatD-related DNase [Re 99.4 1.3E-12 2.8E-17 82.5 5.3 65 2-66 17-82 (296)
9 TIGR03583 EF_0837 probable ami 98.4 7.4E-07 1.6E-11 57.2 5.6 61 2-65 51-120 (365)
10 cd01311 PDC_hydrolase 2-pyrone 98.3 5.1E-06 1.1E-10 51.4 6.5 63 3-65 2-78 (263)
11 cd00530 PTE Phosphotriesterase 98.2 3.3E-06 7.1E-11 52.6 5.3 47 20-66 35-84 (293)
12 COG1099 Predicted metal-depend 98.2 1.9E-06 4.2E-11 53.2 3.0 59 2-65 1-74 (254)
13 cd01295 AdeC Adenine deaminase 98.2 9.9E-06 2.2E-10 53.2 6.5 58 2-61 10-74 (422)
14 cd01292 metallo-dependent_hydr 97.6 9.5E-05 2.1E-09 44.3 3.4 63 3-65 1-91 (275)
15 COG3618 Predicted metal-depend 97.4 0.00027 5.9E-09 44.8 4.3 57 1-57 7-79 (279)
16 COG1831 Predicted metal-depend 97.3 0.0013 2.8E-08 41.7 6.3 63 1-65 5-86 (285)
17 PRK07328 histidinol-phosphatas 97.3 0.0027 5.8E-08 39.6 7.8 37 1-37 1-38 (269)
18 PRK08123 histidinol-phosphatas 97.2 0.0039 8.5E-08 39.0 7.2 37 1-37 1-39 (270)
19 smart00481 POLIIIAc DNA polyme 97.1 0.0077 1.7E-07 30.0 6.9 57 5-62 1-60 (67)
20 PRK00912 ribonuclease P protei 97.1 0.0013 2.8E-08 40.3 4.5 35 1-36 1-35 (237)
21 PF02811 PHP: PHP domain; Int 97.1 0.0072 1.6E-07 34.5 7.3 59 4-63 1-62 (175)
22 COG4464 CapC Capsular polysacc 97.1 0.00046 1E-08 42.7 2.3 36 3-38 1-41 (254)
23 PRK09248 putative hydrolase; V 97.0 0.0094 2E-07 36.7 7.8 35 3-37 4-39 (246)
24 cd01294 DHOase Dihydroorotase 96.8 0.008 1.7E-07 38.4 6.2 59 3-65 6-73 (335)
25 cd01317 DHOase_IIa Dihydroorot 96.7 0.014 3E-07 37.9 7.2 54 2-55 15-76 (374)
26 PRK08392 hypothetical protein; 96.4 0.022 4.9E-07 34.4 6.2 33 4-36 1-33 (215)
27 PRK07369 dihydroorotase; Provi 96.4 0.026 5.6E-07 37.4 6.8 54 2-55 58-119 (418)
28 PRK08609 hypothetical protein; 96.4 0.032 7E-07 38.5 7.4 35 3-37 335-369 (570)
29 cd01318 DHOase_IIb Dihydroorot 96.3 0.034 7.3E-07 36.2 7.1 52 2-53 7-66 (361)
30 cd01316 CAD_DHOase The eukaryo 96.3 0.031 6.6E-07 36.3 6.6 53 2-54 7-67 (344)
31 PF02614 UxaC: Glucuronate iso 96.2 0.004 8.6E-08 42.1 2.5 54 1-55 26-92 (462)
32 PRK02925 glucuronate isomerase 96.2 0.0043 9.2E-08 41.9 2.5 55 1-56 26-93 (466)
33 PRK09532 DNA polymerase III su 96.2 0.04 8.7E-07 39.9 7.3 62 1-63 1-65 (874)
34 PRK07135 dnaE DNA polymerase I 95.9 0.06 1.3E-06 39.5 7.4 62 1-63 1-65 (973)
35 cd01302 Cyclic_amidohydrolases 95.9 0.061 1.3E-06 34.5 6.8 36 2-37 6-44 (337)
36 PRK04250 dihydroorotase; Provi 95.9 0.028 6E-07 37.1 5.3 53 2-54 48-108 (398)
37 PRK07374 dnaE DNA polymerase I 95.8 0.071 1.5E-06 39.8 7.4 62 1-63 1-65 (1170)
38 cd01299 Met_dep_hydrolase_A Me 95.8 0.032 7E-07 35.3 5.2 40 3-42 15-67 (342)
39 TIGR00221 nagA N-acetylglucosa 95.8 0.042 9.2E-07 36.1 5.8 63 2-64 57-129 (380)
40 PRK07945 hypothetical protein; 95.8 0.079 1.7E-06 34.4 6.9 61 3-63 97-171 (335)
41 cd00375 Urease_alpha Urease al 95.8 0.038 8.2E-07 38.4 5.6 47 2-55 130-189 (567)
42 PRK01211 dihydroorotase; Provi 95.6 0.072 1.6E-06 35.4 6.4 52 2-53 47-106 (409)
43 COG0613 Predicted metal-depend 95.6 0.027 5.8E-07 35.3 4.1 34 1-34 1-34 (258)
44 COG1904 UxaC Glucuronate isome 95.5 0.013 2.8E-07 39.4 2.6 54 1-55 25-91 (463)
45 PRK09059 dihydroorotase; Valid 95.5 0.1 2.2E-06 34.7 6.7 62 2-63 61-132 (429)
46 PRK10027 cryptic adenine deami 95.5 0.078 1.7E-06 36.9 6.3 55 2-59 85-147 (588)
47 TIGR01178 ade adenine deaminas 95.4 0.075 1.6E-06 36.6 6.0 56 2-59 51-113 (552)
48 TIGR01856 hisJ_fam histidinol 95.3 0.16 3.5E-06 31.5 6.8 33 4-36 1-34 (253)
49 PRK06826 dnaE DNA polymerase I 95.3 0.16 3.4E-06 38.0 7.6 62 1-63 3-67 (1151)
50 PRK00369 pyrC dihydroorotase; 95.2 0.12 2.7E-06 34.1 6.4 52 2-53 48-107 (392)
51 PRK09236 dihydroorotase; Revie 95.2 0.14 3E-06 34.1 6.7 37 2-38 55-93 (444)
52 PRK06189 allantoinase; Provisi 94.9 0.14 3.1E-06 34.1 6.1 52 2-53 55-115 (451)
53 PF13594 Amidohydro_5: Amidohy 94.8 0.028 6.1E-07 28.0 2.1 30 3-32 36-66 (68)
54 PRK02382 dihydroorotase; Provi 94.8 0.16 3.5E-06 33.7 6.1 52 2-53 55-114 (443)
55 PRK13308 ureC urease subunit a 94.7 0.1 2.2E-06 36.3 5.2 47 2-55 134-189 (569)
56 PRK07627 dihydroorotase; Provi 94.7 0.23 5E-06 33.0 6.7 36 2-37 56-93 (425)
57 PRK05588 histidinol-phosphatas 94.6 0.079 1.7E-06 32.7 4.1 32 3-34 1-33 (255)
58 TIGR00857 pyrC_multi dihydroor 94.4 0.3 6.6E-06 32.1 6.7 36 2-37 40-77 (411)
59 PRK13404 dihydropyrimidinase; 94.4 0.28 6.1E-06 33.1 6.5 37 2-38 55-96 (477)
60 PRK08044 allantoinase; Provisi 94.2 0.24 5.3E-06 33.1 6.0 52 3-54 55-115 (449)
61 PLN02795 allantoinase 94.2 0.17 3.8E-06 34.4 5.3 37 2-38 100-138 (505)
62 PRK09357 pyrC dihydroorotase; 94.0 0.53 1.1E-05 30.9 7.2 37 2-38 54-92 (423)
63 PRK09060 dihydroorotase; Valid 94.0 0.31 6.8E-06 32.5 6.1 52 2-53 57-116 (444)
64 PRK07575 dihydroorotase; Provi 94.0 0.32 7E-06 32.3 6.2 37 2-38 57-95 (438)
65 cd00854 NagA N-acetylglucosami 93.9 0.15 3.2E-06 33.2 4.4 45 2-46 52-103 (374)
66 cd01315 L-HYD_ALN L-Hydantoina 93.9 0.39 8.5E-06 31.7 6.4 37 2-38 53-91 (447)
67 PRK08417 dihydroorotase; Provi 93.8 0.2 4.2E-06 32.8 4.9 37 2-38 31-68 (386)
68 PRK11170 nagA N-acetylglucosam 93.8 0.44 9.5E-06 31.4 6.5 62 3-64 55-129 (382)
69 TIGR01405 polC_Gram_pos DNA po 93.7 0.6 1.3E-05 35.3 7.6 54 2-55 103-159 (1213)
70 PF01979 Amidohydro_1: Amidohy 93.7 0.046 9.9E-07 34.0 1.7 37 2-38 5-50 (333)
71 PRK05672 dnaE2 error-prone DNA 93.6 0.65 1.4E-05 34.5 7.5 61 2-63 4-67 (1046)
72 PRK08323 phenylhydantoinase; V 93.5 0.56 1.2E-05 31.1 6.6 37 2-38 50-90 (459)
73 PRK05673 dnaE DNA polymerase I 93.4 0.57 1.2E-05 35.1 7.1 61 2-63 1-64 (1135)
74 KOG4549 Magnesium-dependent ph 93.4 0.52 1.1E-05 27.2 5.5 52 2-53 19-84 (144)
75 PRK00448 polC DNA polymerase I 93.2 0.63 1.4E-05 35.7 7.1 54 2-55 333-389 (1437)
76 TIGR00594 polc DNA-directed DN 93.2 0.68 1.5E-05 34.3 7.2 60 3-63 1-63 (1022)
77 TIGR03178 allantoinase allanto 93.1 0.53 1.2E-05 31.3 6.1 37 2-38 52-90 (443)
78 cd01314 D-HYD D-hydantoinases 92.8 0.47 1E-05 31.4 5.5 37 2-38 52-92 (447)
79 PRK10657 isoaspartyl dipeptida 92.8 0.78 1.7E-05 29.7 6.4 36 3-38 58-98 (388)
80 PRK13207 ureC urease subunit a 92.7 0.41 8.8E-06 33.4 5.2 31 3-40 131-161 (568)
81 PF04909 Amidohydro_2: Amidohy 92.6 0.6 1.3E-05 28.1 5.5 27 4-33 1-27 (273)
82 COG0685 MetF 5,10-methylenetet 92.6 0.55 1.2E-05 30.0 5.4 59 8-66 82-153 (291)
83 PRK13111 trpA tryptophan synth 92.0 1.2 2.6E-05 28.0 6.3 38 18-55 105-142 (258)
84 PRK13125 trpA tryptophan synth 92.0 0.89 1.9E-05 28.1 5.7 49 16-65 87-138 (244)
85 cd01307 Met_dep_hydrolase_B Me 91.9 0.54 1.2E-05 30.1 4.9 36 2-38 35-70 (338)
86 PLN02942 dihydropyrimidinase 91.9 1.7 3.7E-05 29.4 7.3 36 2-37 58-97 (486)
87 PRK13985 ureB urease subunit b 91.9 0.43 9.4E-06 33.3 4.5 30 3-39 131-160 (568)
88 TIGR02033 D-hydantoinase D-hyd 91.7 0.71 1.5E-05 30.5 5.3 38 2-39 52-93 (454)
89 PRK09237 dihydroorotase; Provi 91.6 0.44 9.6E-06 30.9 4.3 50 2-52 54-104 (380)
90 PRK12394 putative metallo-depe 91.5 0.75 1.6E-05 29.9 5.3 35 2-39 57-93 (379)
91 CHL00200 trpA tryptophan synth 91.4 1.4 2.9E-05 27.9 6.2 37 18-54 107-143 (263)
92 COG1387 HIS2 Histidinol phosph 91.1 2.1 4.6E-05 26.5 6.7 34 3-36 2-35 (237)
93 PRK13309 ureC urease subunit a 91.1 0.6 1.3E-05 32.6 4.6 47 2-55 134-193 (572)
94 PTZ00170 D-ribulose-5-phosphat 91.0 2.4 5.3E-05 26.0 7.1 56 3-65 67-123 (228)
95 TIGR00696 wecB_tagA_cpsF bacte 90.9 2.1 4.6E-05 25.5 6.4 45 19-65 37-82 (177)
96 PLN02591 tryptophan synthase 90.9 2 4.3E-05 27.0 6.5 38 18-55 94-131 (250)
97 cd04724 Tryptophan_synthase_al 90.5 2.1 4.5E-05 26.5 6.3 36 19-54 93-128 (242)
98 TIGR00677 fadh2_euk methylenet 90.5 1.7 3.7E-05 27.6 6.0 59 8-66 64-139 (281)
99 PRK05985 cytosine deaminase; P 90.3 1.8 4E-05 28.2 6.2 33 23-55 104-141 (391)
100 PRK02134 hypothetical protein; 90.2 1.4 3.1E-05 27.6 5.4 52 11-64 10-61 (249)
101 COG0044 PyrC Dihydroorotase an 90.0 1.9 4.1E-05 29.1 6.1 52 2-53 54-113 (430)
102 TIGR00676 fadh2 5,10-methylene 89.6 2.8 6E-05 26.4 6.4 48 18-65 74-134 (272)
103 TIGR02318 phosphono_phnM phosp 89.4 1.6 3.4E-05 28.7 5.4 34 2-35 49-92 (376)
104 cd01293 Bact_CD Bacterial cyto 89.4 1.2 2.5E-05 28.6 4.7 11 2-12 50-60 (398)
105 cd01297 D-aminoacylase D-amino 89.4 1 2.2E-05 29.8 4.5 32 2-36 54-85 (415)
106 PF00290 Trp_syntA: Tryptophan 89.3 0.87 1.9E-05 28.8 4.0 37 19-55 104-140 (259)
107 cd06533 Glyco_transf_WecG_TagA 88.9 3.2 7E-05 24.3 6.5 41 19-60 35-76 (171)
108 COG1820 NagA N-acetylglucosami 88.8 2.4 5.3E-05 28.4 5.9 63 2-64 53-125 (380)
109 cd01298 ATZ_TRZ_like TRZ/ATZ f 88.4 1.5 3.4E-05 28.2 4.8 10 3-12 58-67 (411)
110 cd01308 Isoaspartyl-dipeptidas 88.3 4.1 8.9E-05 26.4 6.7 37 2-38 55-96 (387)
111 PRK13206 ureC urease subunit a 88.3 0.35 7.6E-06 33.8 1.8 29 2-37 136-164 (573)
112 TIGR02967 guan_deamin guanine 88.1 4.9 0.00011 26.2 7.0 31 24-54 97-128 (401)
113 TIGR00856 pyrC_dimer dihydroor 87.7 3.4 7.4E-05 26.9 6.0 58 4-65 8-75 (341)
114 TIGR01792 urease_alph urease, 87.5 0.6 1.3E-05 32.6 2.6 30 3-39 130-159 (567)
115 TIGR00262 trpA tryptophan synt 87.5 4.5 9.6E-05 25.4 6.3 35 20-54 105-139 (256)
116 PRK06920 dnaE DNA polymerase I 87.3 4.8 0.0001 30.5 7.1 62 1-63 1-65 (1107)
117 PLN02303 urease 87.0 0.6 1.3E-05 34.0 2.4 11 3-13 400-410 (837)
118 PF03808 Glyco_tran_WecB: Glyc 86.9 4.5 9.7E-05 23.7 6.4 41 19-60 37-78 (172)
119 TIGR03473 HpnK hopanoid biosyn 86.2 2.8 6.1E-05 26.6 5.0 52 11-64 9-60 (283)
120 COG0159 TrpA Tryptophan syntha 86.1 2.9 6.3E-05 26.7 4.9 39 17-55 109-147 (265)
121 TIGR01182 eda Entner-Doudoroff 86.0 3.8 8.3E-05 25.0 5.3 45 18-62 21-65 (204)
122 COG0106 HisA Phosphoribosylfor 85.8 3.8 8.3E-05 25.8 5.3 37 20-56 87-123 (241)
123 PRK07583 cytosine deaminase-li 85.4 3.3 7.2E-05 27.5 5.2 11 2-12 76-86 (438)
124 PRK09228 guanine deaminase; Pr 84.9 8.3 0.00018 25.7 6.9 30 25-54 123-153 (433)
125 PRK06015 keto-hydroxyglutarate 84.5 4.7 0.0001 24.6 5.2 45 18-62 17-61 (201)
126 PRK05451 dihydroorotase; Provi 84.2 1.3 2.8E-05 28.7 2.8 31 3-37 10-40 (345)
127 PRK09432 metF 5,10-methylenete 84.2 3.9 8.4E-05 26.2 4.9 58 8-65 87-153 (296)
128 PRK13587 1-(5-phosphoribosyl)- 83.8 4.7 0.0001 24.9 5.1 39 22-60 90-129 (234)
129 TIGR01975 isoAsp_dipep isoaspa 83.7 7.9 0.00017 25.7 6.3 37 2-38 57-98 (389)
130 COG0205 PfkA 6-phosphofructoki 83.3 4.8 0.0001 26.6 5.2 42 19-63 83-124 (347)
131 COG0804 UreC Urea amidohydrola 83.2 2.5 5.5E-05 29.0 3.9 46 4-56 132-190 (568)
132 PF01081 Aldolase: KDPG and KH 83.0 5.9 0.00013 24.1 5.1 46 17-62 20-65 (196)
133 cd01309 Met_dep_hydrolase_C Me 82.7 1.8 3.9E-05 28.1 3.0 34 2-35 30-88 (359)
134 PRK09453 phosphodiesterase; Pr 82.4 6.5 0.00014 22.9 5.1 55 3-64 6-73 (182)
135 cd00452 KDPG_aldolase KDPG and 82.3 7.9 0.00017 22.9 5.5 45 18-62 17-61 (190)
136 PF04794 YdjC: YdjC-like prote 82.3 3.8 8.1E-05 25.5 4.2 46 17-64 14-59 (261)
137 PF07085 DRTGG: DRTGG domain; 82.2 3.4 7.3E-05 22.1 3.6 38 17-55 48-85 (105)
138 PRK07279 dnaE DNA polymerase I 82.1 12 0.00026 28.3 7.2 61 2-63 1-64 (1034)
139 PF13380 CoA_binding_2: CoA bi 81.9 4.8 0.0001 22.1 4.2 36 18-55 67-102 (116)
140 PF00834 Ribul_P_3_epim: Ribul 81.7 3.9 8.4E-05 24.8 4.1 48 17-65 67-114 (201)
141 PRK05898 dnaE DNA polymerase I 81.6 13 0.00028 28.0 7.1 61 2-63 1-64 (971)
142 PRK06846 putative deaminase; V 81.5 5 0.00011 26.4 4.8 11 2-12 68-78 (410)
143 cd00953 KDG_aldolase KDG (2-ke 81.4 8.2 0.00018 24.3 5.6 45 18-62 21-73 (279)
144 PRK07228 N-ethylammeline chlor 81.3 10 0.00022 25.2 6.2 10 3-12 58-67 (445)
145 TIGR02127 pyrF_sub2 orotidine 81.3 2.3 5.1E-05 26.8 3.1 33 30-62 187-219 (261)
146 COG0587 DnaE DNA polymerase II 81.1 11 0.00025 28.7 6.8 60 1-63 2-66 (1139)
147 PRK09061 D-glutamate deacylase 81.1 3.6 7.7E-05 28.2 4.1 29 2-37 72-100 (509)
148 PF02608 Bmp: Basic membrane p 81.0 4.7 0.0001 25.6 4.4 41 17-59 48-88 (306)
149 COG1228 HutI Imidazolonepropio 80.8 1.1 2.3E-05 30.0 1.5 11 2-12 65-75 (406)
150 cd01481 vWA_collagen_alpha3-VI 80.3 7.1 0.00015 22.6 4.7 42 17-59 120-161 (165)
151 COG3142 CutC Uncharacterized p 80.1 3.1 6.8E-05 26.2 3.3 49 17-65 128-182 (241)
152 KOG4175 Tryptophan synthase al 80.1 6.1 0.00013 24.8 4.5 36 19-54 112-147 (268)
153 PRK09875 putative hydrolase; P 80.0 11 0.00023 24.3 5.8 63 2-64 7-84 (292)
154 PRK09140 2-dehydro-3-deoxy-6-p 79.8 8.9 0.00019 23.3 5.2 46 17-62 22-68 (206)
155 COG0673 MviM Predicted dehydro 79.6 7.7 0.00017 24.4 5.0 43 19-63 80-125 (342)
156 PF13147 Amidohydro_4: Amidohy 79.0 3.5 7.6E-05 24.6 3.3 34 3-36 11-50 (304)
157 PRK08745 ribulose-phosphate 3- 78.8 12 0.00027 23.1 5.6 47 18-65 73-119 (223)
158 PRK05406 LamB/YcsF family prot 78.7 9.3 0.0002 24.2 5.1 62 1-66 1-65 (246)
159 PRK13660 hypothetical protein; 78.3 10 0.00022 22.9 5.0 43 19-61 31-76 (182)
160 COG3394 Uncharacterized protei 77.9 4 8.7E-05 26.0 3.3 44 19-64 18-61 (257)
161 PRK09248 putative hydrolase; V 77.5 2.4 5.1E-05 26.1 2.2 23 19-41 203-225 (246)
162 PRK09358 adenosine deaminase; 77.3 3.8 8.3E-05 26.2 3.2 27 3-32 12-38 (340)
163 cd06353 PBP1_BmpA_Med_like Per 77.2 9.9 0.00022 23.5 5.0 43 17-61 44-86 (258)
164 cd00537 MTHFR Methylenetetrahy 76.9 7.9 0.00017 24.2 4.5 33 8-40 63-96 (274)
165 PRK14085 imidazolonepropionase 76.7 1.3 2.8E-05 28.9 0.9 11 2-12 64-74 (382)
166 PRK06380 metal-dependent hydro 76.1 3.3 7.1E-05 27.2 2.7 11 2-12 55-65 (418)
167 PLN02446 (5-phosphoribosyl)-5- 76.1 10 0.00022 24.2 4.8 40 21-60 95-140 (262)
168 PRK15446 phosphonate metabolis 75.9 12 0.00027 24.6 5.4 35 3-37 54-98 (383)
169 PF14226 DIOX_N: non-haem diox 75.9 5.6 0.00012 21.2 3.3 35 19-53 17-51 (116)
170 PRK13125 trpA tryptophan synth 75.9 16 0.00035 22.6 6.0 39 17-56 116-154 (244)
171 TIGR01430 aden_deam adenosine 75.8 4.1 8.9E-05 25.9 3.0 27 3-32 3-29 (324)
172 COG2102 Predicted ATPases of P 75.7 12 0.00027 23.4 5.0 19 17-35 122-140 (223)
173 PF07969 Amidohydro_3: Amidohy 75.6 0.79 1.7E-05 29.6 -0.2 10 3-12 6-15 (404)
174 PRK08005 epimerase; Validated 75.4 16 0.00035 22.4 5.8 14 19-32 70-83 (210)
175 COG0036 Rpe Pentose-5-phosphat 75.3 17 0.00037 22.7 5.7 14 19-32 73-86 (220)
176 cd01296 Imidazolone-5PH Imidaz 74.2 1.6 3.4E-05 28.0 0.9 11 2-12 38-48 (371)
177 PRK08883 ribulose-phosphate 3- 74.1 18 0.00038 22.2 5.8 15 19-33 95-109 (220)
178 KOG2584 Dihydroorotase and rel 74.0 6.8 0.00015 27.1 3.8 60 3-64 68-137 (522)
179 TIGR00007 phosphoribosylformim 73.2 15 0.00033 22.1 5.0 41 20-60 84-126 (230)
180 PF01408 GFO_IDH_MocA: Oxidore 73.1 12 0.00026 19.8 4.6 43 19-62 75-119 (120)
181 PRK05718 keto-hydroxyglutarate 72.8 18 0.00039 22.2 5.2 44 18-62 28-72 (212)
182 PRK12569 hypothetical protein; 71.9 17 0.00036 23.1 5.0 59 3-66 4-68 (245)
183 PF06908 DUF1273: Protein of u 71.8 6.1 0.00013 23.6 2.9 43 19-61 31-76 (177)
184 TIGR02482 PFKA_ATP 6-phosphofr 71.7 14 0.0003 23.9 4.7 36 18-54 79-114 (301)
185 cd01482 vWA_collagen_alphaI-XI 71.5 11 0.00025 21.4 4.0 36 17-53 117-152 (164)
186 PRK14072 6-phosphofructokinase 71.4 15 0.00033 24.8 5.0 45 18-63 91-138 (416)
187 TIGR03581 EF_0839 conserved hy 71.1 9.7 0.00021 23.9 3.7 16 19-34 191-206 (236)
188 PF01113 DapB_N: Dihydrodipico 71.1 4.7 0.0001 22.3 2.2 39 19-57 80-119 (124)
189 TIGR01919 hisA-trpF 1-(5-phosp 71.1 20 0.00043 22.3 5.2 36 21-56 87-122 (243)
190 TIGR01501 MthylAspMutase methy 71.0 10 0.00022 21.7 3.7 37 18-54 68-109 (134)
191 cd07409 MPP_CD73_N CD73 ecto-5 70.8 21 0.00045 22.4 5.3 46 19-66 171-216 (281)
192 PRK00881 purH bifunctional pho 70.8 12 0.00027 26.1 4.5 38 18-56 464-501 (513)
193 TIGR01093 aroD 3-dehydroquinat 70.8 19 0.00042 21.9 5.0 36 18-53 136-173 (228)
194 COG1001 AdeC Adenine deaminase 70.4 16 0.00035 26.0 5.0 32 2-35 78-109 (584)
195 PRK04128 1-(5-phosphoribosyl)- 70.4 17 0.00037 22.4 4.7 37 23-60 88-124 (228)
196 COG1540 Uncharacterized protei 70.3 16 0.00034 23.3 4.5 61 1-65 1-64 (252)
197 PRK06740 histidinol-phosphatas 69.9 5.7 0.00012 25.8 2.7 19 18-36 62-80 (331)
198 PRK06687 chlorohydrolase; Vali 69.6 3 6.6E-05 27.4 1.4 10 3-12 60-69 (419)
199 TIGR01019 sucCoAalpha succinyl 69.4 25 0.00054 22.6 5.4 37 19-55 76-114 (286)
200 PRK08203 hydroxydechloroatrazi 69.3 2.4 5.3E-05 28.2 0.9 10 3-12 61-70 (451)
201 cd02072 Glm_B12_BD B12 binding 69.1 13 0.00027 21.2 3.7 37 18-54 66-107 (128)
202 TIGR01224 hutI imidazoloneprop 69.0 2.6 5.6E-05 27.2 1.0 11 2-12 41-51 (377)
203 TIGR03275 methan_mark_8 putati 68.7 28 0.0006 22.3 6.1 47 18-64 150-196 (259)
204 PLN02884 6-phosphofructokinase 68.4 34 0.00073 23.2 6.1 37 15-52 128-164 (411)
205 COG1751 Uncharacterized conser 68.3 14 0.0003 22.2 3.8 36 19-54 16-51 (186)
206 PTZ00286 6-phospho-1-fructokin 68.3 28 0.00061 24.0 5.8 46 17-63 163-211 (459)
207 COG0329 DapA Dihydrodipicolina 68.2 20 0.00043 23.0 4.8 35 19-53 27-68 (299)
208 PRK07329 hypothetical protein; 67.7 5.3 0.00011 24.7 2.1 25 3-27 1-26 (246)
209 smart00187 INB Integrin beta s 67.6 28 0.0006 23.9 5.5 36 5-40 257-300 (423)
210 cd01320 ADA Adenosine deaminas 67.4 8.2 0.00018 24.5 3.0 25 4-31 5-29 (325)
211 PRK00125 pyrF orotidine 5'-pho 67.4 10 0.00022 24.3 3.4 34 29-62 188-221 (278)
212 PLN02757 sirohydrochlorine fer 67.3 22 0.00049 20.6 4.7 49 17-65 58-118 (154)
213 PRK13586 1-(5-phosphoribosyl)- 67.3 25 0.00053 21.8 5.0 39 22-60 87-127 (232)
214 PTZ00124 adenosine deaminase; 67.2 8.8 0.00019 25.4 3.2 26 3-31 37-62 (362)
215 cd00419 Ferrochelatase_C Ferro 66.7 20 0.00043 20.3 4.2 27 13-39 73-99 (135)
216 PF12850 Metallophos_2: Calcin 66.7 5.7 0.00012 21.9 2.0 52 3-64 6-57 (156)
217 TIGR00288 conserved hypothetic 66.6 11 0.00023 22.4 3.2 34 17-51 116-149 (160)
218 cd00840 MPP_Mre11_N Mre11 nucl 66.5 24 0.00052 20.7 6.2 46 19-64 30-86 (223)
219 cd00408 DHDPS-like Dihydrodipi 66.4 29 0.00062 21.6 5.5 35 19-53 20-61 (281)
220 PRK06830 diphosphate--fructose 66.4 36 0.00079 23.3 6.0 47 16-63 158-207 (443)
221 PRK13575 3-dehydroquinate dehy 66.2 29 0.00063 21.6 5.8 35 18-52 143-179 (238)
222 PRK05678 succinyl-CoA syntheta 66.2 23 0.00049 22.8 4.8 36 19-54 78-115 (291)
223 PLN02599 dihydroorotase 66.1 36 0.00078 22.6 5.9 29 4-36 29-57 (364)
224 PF02126 PTE: Phosphotriestera 66.1 11 0.00024 24.4 3.4 44 22-65 43-89 (308)
225 PRK09045 N-ethylammeline chlor 66.0 2.7 5.8E-05 27.9 0.6 11 2-12 67-77 (443)
226 PRK02412 aroD 3-dehydroquinate 65.9 25 0.00054 21.9 4.9 35 18-52 153-189 (253)
227 PLN02591 tryptophan synthase 65.8 24 0.00052 22.2 4.8 42 17-59 118-160 (250)
228 PRK09722 allulose-6-phosphate 65.6 30 0.00065 21.5 5.3 14 19-32 71-84 (229)
229 cd01475 vWA_Matrilin VWA_Matri 65.5 18 0.0004 21.7 4.2 36 17-53 122-157 (224)
230 PF04909 Amidohydro_2: Amidohy 65.4 13 0.00028 22.3 3.5 39 21-59 121-167 (273)
231 TIGR01163 rpe ribulose-phospha 65.3 26 0.00055 20.6 6.2 18 19-36 93-110 (210)
232 PRK09356 imidazolonepropionase 65.2 3.3 7.2E-05 26.9 1.0 11 2-12 66-76 (406)
233 PLN02564 6-phosphofructokinase 64.9 44 0.00095 23.3 6.2 36 16-52 162-197 (484)
234 PRK02261 methylaspartate mutas 64.5 23 0.00049 20.1 4.2 14 18-31 70-83 (137)
235 TIGR03249 KdgD 5-dehydro-4-deo 64.4 26 0.00057 22.2 4.8 35 19-53 28-69 (296)
236 cd00429 RPE Ribulose-5-phospha 64.2 27 0.00058 20.4 6.5 14 20-33 95-108 (211)
237 PF09872 DUF2099: Uncharacteri 64.1 36 0.00077 21.8 6.4 46 18-64 150-196 (258)
238 cd07406 MPP_CG11883_N Drosophi 64.0 32 0.00069 21.3 5.1 46 19-66 160-205 (257)
239 PRK03170 dihydrodipicolinate s 64.0 27 0.00059 22.0 4.9 35 19-53 24-65 (292)
240 TIGR02483 PFK_mixed phosphofru 63.9 21 0.00047 23.3 4.4 42 18-63 82-123 (324)
241 cd02430 PTH2 Peptidyl-tRNA hyd 63.9 23 0.00051 19.7 6.0 35 20-54 38-72 (115)
242 cd00764 Eukaryotic_PFK Phospho 63.7 26 0.00056 25.7 5.1 46 17-63 465-514 (762)
243 PF01487 DHquinase_I: Type I 3 63.5 15 0.00034 22.1 3.6 37 18-54 131-169 (224)
244 PRK15062 hydrogenase isoenzyme 63.2 23 0.00049 23.8 4.5 19 45-63 119-140 (364)
245 cd01305 archeal_chlorohydrolas 63.1 2.6 5.7E-05 25.9 0.2 30 25-54 60-90 (263)
246 PRK08091 ribulose-phosphate 3- 63.0 35 0.00075 21.3 6.0 48 18-65 79-127 (228)
247 TIGR00075 hypD hydrogenase exp 62.9 23 0.00051 23.8 4.5 19 45-63 125-146 (369)
248 cd00952 CHBPH_aldolase Trans-o 62.8 38 0.00082 21.7 5.6 35 18-52 30-71 (309)
249 PRK03692 putative UDP-N-acetyl 62.8 35 0.00077 21.4 6.4 43 19-64 94-137 (243)
250 PF01924 HypD: Hydrogenase for 62.7 25 0.00053 23.6 4.5 19 45-63 114-135 (355)
251 cd00951 KDGDH 5-dehydro-4-deox 62.5 30 0.00065 21.9 4.9 35 19-53 23-64 (289)
252 cd07393 MPP_DR1119 Deinococcus 62.5 33 0.00071 20.9 7.3 61 3-64 4-81 (232)
253 cd01303 GDEase Guanine deamina 62.5 4.5 9.7E-05 26.9 1.2 10 3-12 67-76 (429)
254 COG0138 PurH AICAR transformyl 62.4 14 0.0003 25.9 3.4 38 19-57 467-504 (515)
255 PRK08393 N-ethylammeline chlor 62.4 3.9 8.4E-05 27.0 0.9 11 2-12 55-65 (424)
256 PRK07106 5-aminoimidazole-4-ca 62.3 17 0.00037 24.6 3.8 36 19-55 342-377 (390)
257 COG1744 Med Uncharacterized AB 62.2 35 0.00076 22.4 5.2 42 17-60 84-125 (345)
258 PF02662 FlpD: Methyl-viologen 62.1 12 0.00026 20.9 2.8 24 20-43 42-65 (124)
259 PRK08204 hypothetical protein; 62.1 3.8 8.2E-05 27.1 0.8 10 2-11 58-67 (449)
260 COG2108 Uncharacterized conser 62.0 17 0.00038 24.2 3.7 50 5-55 110-164 (353)
261 cd00950 DHDPS Dihydrodipicolin 62.0 31 0.00068 21.5 4.9 35 19-53 23-64 (284)
262 cd04724 Tryptophan_synthase_al 61.7 35 0.00077 21.1 5.0 35 17-52 116-150 (242)
263 PRK06552 keto-hydroxyglutarate 61.7 35 0.00075 20.9 5.2 45 18-62 26-73 (213)
264 PF03328 HpcH_HpaI: HpcH/HpaI 61.4 12 0.00026 22.6 2.8 37 19-55 173-209 (221)
265 KOG3111 D-ribulose-5-phosphate 61.3 37 0.00081 21.1 5.9 14 19-32 101-114 (224)
266 PF03361 Herpes_IE2_3: Herpes 61.2 18 0.0004 21.5 3.5 31 27-57 104-138 (162)
267 PF01244 Peptidase_M19: Membra 60.8 3.6 7.8E-05 26.6 0.5 38 1-38 6-54 (320)
268 cd01427 HAD_like Haloacid deha 60.8 22 0.00048 18.4 4.6 33 14-46 24-56 (139)
269 PF13419 HAD_2: Haloacid dehal 60.8 26 0.00057 19.2 4.3 34 15-48 78-111 (176)
270 COG2176 PolC DNA polymerase II 60.7 49 0.0011 26.0 6.1 59 3-62 336-397 (1444)
271 TIGR03128 RuMP_HxlA 3-hexulose 60.6 33 0.00071 20.3 6.7 32 23-54 69-101 (206)
272 PRK07213 chlorohydrolase; Prov 60.6 4.4 9.6E-05 26.4 0.9 11 2-12 51-61 (375)
273 cd03409 Chelatase_Class_II Cla 60.3 20 0.00043 18.5 3.3 24 16-39 44-67 (101)
274 PF08671 SinI: Anti-repressor 60.3 14 0.0003 15.8 2.6 25 18-50 4-28 (30)
275 PF02614 UxaC: Glucuronate iso 60.2 51 0.0011 22.8 5.8 45 19-63 328-378 (462)
276 PRK06038 N-ethylammeline chlor 60.1 4.5 9.8E-05 26.8 0.9 11 2-12 56-66 (430)
277 cd07410 MPP_CpdB_N Escherichia 59.8 26 0.00056 21.8 4.2 48 19-66 172-228 (277)
278 PLN02417 dihydrodipicolinate s 59.7 42 0.0009 21.2 5.5 35 19-53 24-65 (280)
279 PRK03620 5-dehydro-4-deoxygluc 59.6 43 0.00094 21.3 5.5 34 19-52 30-70 (303)
280 cd01473 vWA_CTRP CTRP for CS 59.6 18 0.00039 21.5 3.3 34 19-53 128-161 (192)
281 PRK08645 bifunctional homocyst 59.4 54 0.0012 23.2 6.0 36 18-53 397-446 (612)
282 TIGR00674 dapA dihydrodipicoli 59.4 42 0.00091 21.1 5.5 35 19-53 21-62 (285)
283 TIGR03351 PhnX-like phosphonat 59.4 34 0.00075 20.1 4.8 36 14-49 87-122 (220)
284 PRK12393 amidohydrolase; Provi 59.2 5.5 0.00012 26.7 1.2 11 2-12 60-70 (457)
285 PRK06555 pyrophosphate--fructo 59.0 39 0.00084 23.0 5.1 44 19-63 101-147 (403)
286 PF00701 DHDPS: Dihydrodipicol 59.0 42 0.00092 21.0 5.7 35 19-53 24-65 (289)
287 COG3360 Uncharacterized conser 58.8 11 0.00024 19.3 2.0 18 32-49 7-24 (71)
288 cd00363 PFK Phosphofructokinas 58.7 38 0.00083 22.2 4.9 34 18-52 80-113 (338)
289 cd01312 Met_dep_hydrolase_D Me 58.6 4.3 9.2E-05 26.7 0.6 10 3-12 33-42 (381)
290 COG2062 SixA Phosphohistidine 58.4 34 0.00073 20.3 4.3 48 16-63 84-135 (163)
291 PRK09230 cytosine deaminase; P 58.3 4.8 0.0001 26.9 0.8 10 3-12 57-66 (426)
292 PF00962 A_deaminase: Adenosin 58.3 9.4 0.0002 24.2 2.1 28 2-32 3-30 (331)
293 cd04723 HisA_HisF Phosphoribos 58.1 41 0.00089 20.6 4.8 38 22-60 92-131 (233)
294 PF00362 Integrin_beta: Integr 58.0 24 0.00052 24.0 4.0 51 4-56 259-317 (426)
295 PRK05581 ribulose-phosphate 3- 58.0 38 0.00081 20.1 6.5 15 20-34 99-113 (220)
296 COG1303 Uncharacterized protei 57.9 8.7 0.00019 23.1 1.7 30 8-39 82-111 (179)
297 PF12689 Acid_PPase: Acid Phos 57.6 38 0.00083 20.1 5.7 38 14-51 45-83 (169)
298 PLN02251 pyrophosphate-depende 57.4 47 0.001 23.6 5.4 34 18-52 178-211 (568)
299 PRK15493 5-methylthioadenosine 57.4 5.2 0.00011 26.6 0.8 9 3-11 61-69 (435)
300 PRK14071 6-phosphofructokinase 57.4 36 0.00077 22.6 4.7 35 18-53 95-129 (360)
301 TIGR00040 yfcE phosphoesterase 57.4 33 0.00072 19.3 5.4 54 3-64 6-61 (158)
302 PF00702 Hydrolase: haloacid d 57.3 18 0.0004 20.8 3.1 30 15-44 128-157 (215)
303 PRK06151 N-ethylammeline chlor 57.1 5.3 0.00012 27.0 0.9 10 2-11 58-67 (488)
304 cd07400 MPP_YydB Bacillus subt 56.7 32 0.00068 18.9 5.8 44 21-64 26-78 (144)
305 PRK14988 GMP/IMP nucleotidase; 56.7 42 0.00091 20.2 5.6 35 15-49 94-128 (224)
306 cd08162 MPP_PhoA_N Synechococc 56.5 34 0.00074 22.0 4.4 45 19-64 196-240 (313)
307 cd03174 DRE_TIM_metallolyase D 56.4 43 0.00094 20.3 5.5 46 18-65 147-197 (265)
308 PRK13813 orotidine 5'-phosphat 56.2 41 0.0009 20.1 6.5 48 3-54 57-105 (215)
309 cd02148 Nitroreductase_5 Nitro 56.1 7.8 0.00017 22.7 1.4 42 22-63 124-166 (185)
310 PLN03176 flavanone-3-hydroxyla 55.9 31 0.00066 19.2 3.7 35 19-53 57-91 (120)
311 TIGR01116 ATPase-IIA1_Ca sarco 55.8 28 0.00061 25.7 4.3 32 14-45 537-568 (917)
312 TIGR02477 PFKA_PPi diphosphate 55.5 42 0.00091 23.6 4.9 34 18-52 149-182 (539)
313 cd00502 DHQase_I Type I 3-dehy 55.4 45 0.00097 20.2 5.1 37 18-54 131-169 (225)
314 TIGR00126 deoC deoxyribose-pho 55.4 39 0.00083 20.8 4.3 54 7-63 8-62 (211)
315 TIGR01454 AHBA_synth_RP 3-amin 55.4 40 0.00087 19.7 4.7 33 14-46 75-107 (205)
316 PRK06361 hypothetical protein; 55.3 43 0.00092 19.9 7.2 22 16-37 9-30 (212)
317 PF07555 NAGidase: beta-N-acet 55.2 21 0.00046 23.2 3.3 47 18-65 16-78 (306)
318 PF00365 PFK: Phosphofructokin 55.0 35 0.00075 21.8 4.2 35 19-54 81-115 (282)
319 PRK00979 tetrahydromethanopter 55.0 55 0.0012 21.5 5.1 42 22-64 180-227 (308)
320 TIGR01091 upp uracil phosphori 54.9 45 0.00099 20.1 5.6 45 19-64 138-183 (207)
321 cd01313 Met_dep_hydrolase_E Me 54.6 3.9 8.3E-05 27.1 -0.1 11 2-12 43-53 (418)
322 TIGR02717 AcCoA-syn-alpha acet 54.6 65 0.0014 21.8 5.9 37 19-55 77-121 (447)
323 cd02812 PcrB_like PcrB_like pr 54.5 50 0.0011 20.5 5.2 38 17-54 12-51 (219)
324 PLN03028 pyrophosphate--fructo 54.4 48 0.001 23.8 5.1 34 18-52 161-194 (610)
325 COG1246 ArgA N-acetylglutamate 54.3 21 0.00046 21.0 2.9 25 19-43 87-111 (153)
326 PF11880 DUF3400: Domain of un 54.3 13 0.00029 17.5 1.7 17 19-35 28-44 (45)
327 PF06415 iPGM_N: BPG-independe 54.3 22 0.00049 22.1 3.2 16 19-34 48-63 (223)
328 TIGR01685 MDP-1 magnesium-depe 54.2 44 0.00096 19.8 4.6 36 14-49 45-81 (174)
329 cd03413 CbiK_C Anaerobic cobal 54.2 29 0.00062 18.7 3.3 21 16-36 41-61 (103)
330 PF04263 TPK_catalytic: Thiami 53.9 38 0.00082 18.9 5.1 36 19-54 48-83 (123)
331 cd01452 VWA_26S_proteasome_sub 53.8 35 0.00077 20.5 3.9 36 18-53 124-160 (187)
332 cd00765 Pyrophosphate_PFK Phos 53.8 55 0.0012 23.2 5.3 34 18-52 154-187 (550)
333 PRK04147 N-acetylneuraminate l 53.7 51 0.0011 20.8 4.8 34 19-52 26-67 (293)
334 PRK07114 keto-hydroxyglutarate 53.7 52 0.0011 20.4 5.2 45 18-62 28-76 (222)
335 COG1922 WecG Teichoic acid bio 53.4 57 0.0012 20.8 5.6 38 19-57 97-135 (253)
336 PRK14024 phosphoribosyl isomer 53.1 50 0.0011 20.3 4.6 36 21-56 88-123 (241)
337 KOG2310 DNA repair exonuclease 53.1 84 0.0018 22.7 6.0 51 3-54 17-83 (646)
338 PRK14010 potassium-transportin 53.1 34 0.00073 24.7 4.2 30 14-43 441-470 (673)
339 TIGR01647 ATPase-IIIA_H plasma 53.0 33 0.00071 24.9 4.2 31 14-44 442-472 (755)
340 PRK07085 diphosphate--fructose 52.9 45 0.00097 23.6 4.7 34 18-52 152-185 (555)
341 PRK00507 deoxyribose-phosphate 52.7 45 0.00099 20.5 4.4 45 16-63 21-66 (221)
342 PF00977 His_biosynth: Histidi 52.7 49 0.0011 20.2 4.5 47 17-63 147-200 (229)
343 PRK15418 transcriptional regul 52.5 47 0.001 21.5 4.6 17 19-35 46-62 (318)
344 COG3653 N-acyl-D-aspartate/D-g 52.3 11 0.00024 26.3 1.7 13 2-14 62-74 (579)
345 PRK07203 putative chlorohydrol 52.3 6.5 0.00014 26.1 0.7 9 3-11 61-69 (442)
346 TIGR01524 ATPase-IIIB_Mg magne 52.1 35 0.00075 25.2 4.3 31 14-44 515-545 (867)
347 PF03746 LamB_YcsF: LamB/YcsF 52.0 23 0.00049 22.4 3.0 24 40-66 40-63 (242)
348 PRK06646 DNA polymerase III su 52.0 40 0.00088 19.7 3.9 48 1-50 1-48 (154)
349 cd02407 PTH2_family Peptidyl-t 51.9 41 0.00088 18.7 5.7 35 19-53 37-71 (115)
350 PRK00042 tpiA triosephosphate 51.9 35 0.00075 21.5 3.8 29 17-45 102-134 (250)
351 PF06180 CbiK: Cobalt chelatas 51.9 55 0.0012 20.8 4.7 39 17-55 58-99 (262)
352 TIGR00683 nanA N-acetylneurami 51.8 56 0.0012 20.7 4.8 34 19-52 23-64 (290)
353 PF04723 GRDA: Glycine reducta 51.8 27 0.00059 20.4 3.1 24 39-62 49-74 (150)
354 CHL00200 trpA tryptophan synth 51.8 60 0.0013 20.6 5.4 42 17-59 131-173 (263)
355 TIGR01517 ATPase-IIB_Ca plasma 51.8 39 0.00085 25.1 4.5 32 14-45 579-610 (941)
356 PLN02750 oxidoreductase, 2OG-F 51.6 32 0.00069 22.4 3.7 34 20-53 45-78 (345)
357 PRK13111 trpA tryptophan synth 51.5 60 0.0013 20.5 5.1 42 17-59 129-171 (258)
358 PRK01122 potassium-transportin 51.5 41 0.00088 24.4 4.4 30 14-43 445-474 (679)
359 KOG4175 Tryptophan synthase al 51.4 23 0.00049 22.3 2.8 37 18-54 136-174 (268)
360 PF00762 Ferrochelatase: Ferro 51.3 30 0.00066 22.4 3.6 27 13-39 237-263 (316)
361 TIGR02253 CTE7 HAD superfamily 51.2 49 0.0011 19.4 4.8 31 15-45 95-125 (221)
362 cd04823 ALAD_PBGS_aspartate_ri 51.2 70 0.0015 21.2 5.7 22 18-39 55-76 (320)
363 TIGR00355 purH phosphoribosyla 51.1 23 0.00049 24.8 3.1 36 19-55 463-498 (511)
364 PF03659 Glyco_hydro_71: Glyco 51.0 73 0.0016 21.4 5.5 45 17-61 17-67 (386)
365 PF10623 PilI: Plasmid conjuga 50.8 33 0.00072 18.1 3.0 28 3-30 13-42 (83)
366 COG4022 Uncharacterized protei 50.7 65 0.0014 20.7 5.0 45 19-64 156-200 (286)
367 PRK14057 epimerase; Provisiona 50.7 64 0.0014 20.6 6.0 16 18-33 86-101 (254)
368 PRK01130 N-acetylmannosamine-6 50.7 54 0.0012 19.7 5.7 44 21-64 79-127 (221)
369 TIGR00283 arch_pth2 peptidyl-t 50.5 43 0.00094 18.6 6.0 34 20-53 38-71 (115)
370 cd00331 IGPS Indole-3-glycerol 50.5 53 0.0011 19.6 4.4 18 22-39 86-103 (217)
371 PF02219 MTHFR: Methylenetetra 50.4 61 0.0013 20.5 4.8 24 18-41 86-109 (287)
372 TIGR01449 PGP_bact 2-phosphogl 50.4 50 0.0011 19.2 4.9 34 15-48 86-119 (213)
373 cd00954 NAL N-Acetylneuraminic 50.3 63 0.0014 20.4 5.3 35 19-53 23-65 (288)
374 COG3491 PcbC Isopenicillin N s 50.2 38 0.00082 22.4 3.8 35 20-54 27-61 (322)
375 cd07402 MPP_GpdQ Enterobacter 50.2 53 0.0012 19.5 5.6 47 18-64 26-80 (240)
376 COG1058 CinA Predicted nucleot 50.2 65 0.0014 20.5 5.9 49 17-65 21-72 (255)
377 PRK14114 1-(5-phosphoribosyl)- 50.1 61 0.0013 20.2 5.6 47 17-63 144-197 (241)
378 PRK11572 copper homeostasis pr 50.1 60 0.0013 20.6 4.6 49 17-65 128-181 (248)
379 COG0859 RfaF ADP-heptose:LPS h 49.9 63 0.0014 20.8 4.9 37 18-56 196-232 (334)
380 PRK12435 ferrochelatase; Provi 49.7 14 0.0003 23.9 1.9 27 13-39 228-255 (311)
381 TIGR01681 HAD-SF-IIIC HAD-supe 49.6 32 0.0007 18.9 3.1 30 15-44 30-59 (128)
382 TIGR03729 acc_ester putative p 49.6 58 0.0012 19.7 5.7 46 19-64 21-71 (239)
383 cd00443 ADA_AMPD Adenosine/AMP 49.5 12 0.00026 23.9 1.5 11 2-12 2-12 (305)
384 PF07894 DUF1669: Protein of u 49.4 62 0.0013 21.0 4.7 49 4-53 121-172 (284)
385 COG0561 Cof Predicted hydrolas 49.2 58 0.0013 19.9 4.5 34 16-49 22-55 (264)
386 PF13407 Peripla_BP_4: Peripla 49.2 42 0.00091 19.9 3.8 36 19-54 44-79 (257)
387 cd07388 MPP_Tt1561 Thermus the 49.2 62 0.0013 20.0 5.2 30 3-38 10-39 (224)
388 PF01903 CbiX: CbiX; InterPro 49.1 12 0.00027 19.6 1.4 50 17-66 37-98 (105)
389 COG0678 AHP1 Peroxiredoxin [Po 49.0 33 0.00071 20.5 3.1 23 18-40 60-82 (165)
390 cd02149 NfsB_like_nitroreducta 49.0 22 0.00047 20.1 2.4 44 20-63 95-140 (157)
391 TIGR01422 phosphonatase phosph 48.9 59 0.0013 19.7 5.1 35 15-49 100-134 (253)
392 TIGR01428 HAD_type_II 2-haloal 48.9 52 0.0011 19.0 4.9 33 16-48 94-126 (198)
393 PRK14717 putative glycine/sarc 48.9 36 0.00078 18.8 3.1 11 22-32 9-19 (107)
394 PRK09968 serine/threonine-spec 48.8 44 0.00096 20.2 3.9 45 19-64 30-78 (218)
395 COG2069 CdhD CO dehydrogenase/ 48.6 80 0.0017 21.1 5.6 44 18-61 213-257 (403)
396 PF00551 Formyl_trans_N: Formy 48.5 40 0.00086 19.8 3.6 41 20-65 69-109 (181)
397 COG3958 Transketolase, C-termi 48.5 20 0.00044 23.5 2.4 42 21-63 15-56 (312)
398 TIGR01769 GGGP geranylgeranylg 48.5 54 0.0012 20.1 4.2 37 17-53 11-50 (205)
399 cd01474 vWA_ATR ATR (Anthrax T 48.5 53 0.0011 19.0 4.6 39 19-58 123-161 (185)
400 PRK03202 6-phosphofructokinase 48.4 45 0.00097 21.8 4.0 34 18-52 81-114 (320)
401 PLN02891 IMP cyclohydrolase 48.3 38 0.00082 24.0 3.8 34 21-55 501-534 (547)
402 PF02719 Polysacc_synt_2: Poly 48.3 26 0.00057 22.7 2.9 22 19-40 108-129 (293)
403 TIGR00587 nfo apurinic endonuc 48.3 66 0.0014 20.1 5.0 27 16-42 10-36 (274)
404 PF13353 Fer4_12: 4Fe-4S singl 48.3 45 0.00097 18.1 3.8 25 19-43 41-65 (139)
405 COG1646 Predicted phosphate-bi 48.2 37 0.00081 21.5 3.5 36 17-52 28-66 (240)
406 KOG0807 Carbon-nitrogen hydrol 48.2 74 0.0016 20.6 5.2 45 19-64 36-98 (295)
407 PRK05321 nicotinate phosphorib 48.2 49 0.0011 22.4 4.2 33 20-53 292-327 (400)
408 PRK05805 phosphate butyryltran 48.1 73 0.0016 20.5 5.7 19 19-37 5-23 (301)
409 PRK09310 aroDE bifunctional 3- 48.1 74 0.0016 21.8 5.2 39 17-55 116-156 (477)
410 TIGR01482 SPP-subfamily Sucros 48.0 56 0.0012 19.2 4.9 31 17-47 18-48 (225)
411 PRK15122 magnesium-transportin 48.0 39 0.00084 25.1 4.0 31 14-44 550-580 (903)
412 COG1889 NOP1 Fibrillarin-like 48.0 35 0.00075 21.5 3.3 27 36-62 105-131 (231)
413 PF01994 Trm56: tRNA ribose 2' 48.0 12 0.00026 21.2 1.2 30 8-39 28-57 (120)
414 cd01450 vWFA_subfamily_ECM Von 47.9 45 0.00098 18.1 3.6 35 18-53 120-154 (161)
415 COG0502 BioB Biotin synthase a 47.8 71 0.0015 21.2 4.9 49 17-65 179-233 (335)
416 KOG3282 Uncharacterized conser 47.7 64 0.0014 19.8 4.8 36 19-54 112-147 (190)
417 PLN02522 ATP citrate (pro-S)-l 47.7 94 0.002 22.4 5.7 37 19-55 92-130 (608)
418 TIGR00109 hemH ferrochelatase. 47.7 13 0.00027 24.1 1.4 27 13-39 242-268 (322)
419 COG1816 Add Adenosine deaminas 47.7 17 0.00037 24.1 2.0 28 3-33 13-40 (345)
420 PF05378 Hydant_A_N: Hydantoin 47.6 58 0.0013 19.2 4.2 36 18-53 135-174 (176)
421 TIGR02313 HpaI-NOT-DapA 2,4-di 47.5 72 0.0016 20.3 4.8 22 19-40 23-44 (294)
422 COG1908 FrhD Coenzyme F420-red 47.4 29 0.00063 19.9 2.7 24 20-43 43-66 (132)
423 PRK05368 homoserine O-succinyl 47.4 43 0.00094 21.8 3.8 37 26-62 95-144 (302)
424 PRK10826 2-deoxyglucose-6-phos 47.3 59 0.0013 19.2 4.8 35 15-49 93-127 (222)
425 TIGR01487 SPP-like sucrose-pho 47.3 59 0.0013 19.2 4.7 33 16-48 20-52 (215)
426 TIGR01522 ATPase-IIA2_Ca golgi 47.3 42 0.00091 24.8 4.1 33 14-46 528-560 (884)
427 PRK11439 pphA serine/threonine 47.2 33 0.00072 20.7 3.2 45 19-64 32-80 (218)
428 PRK14565 triosephosphate isome 47.2 45 0.00097 20.9 3.8 27 17-43 101-131 (237)
429 PRK08418 chlorohydrolase; Prov 47.2 6.9 0.00015 25.9 0.2 9 3-11 60-68 (408)
430 PF10662 PduV-EutP: Ethanolami 47.2 56 0.0012 18.9 4.1 34 17-50 106-140 (143)
431 cd00763 Bacterial_PFK Phosphof 47.2 47 0.001 21.7 4.0 42 18-63 80-121 (317)
432 PRK00748 1-(5-phosphoribosyl)- 47.1 62 0.0013 19.4 4.7 34 23-56 89-122 (233)
433 cd03411 Ferrochelatase_N Ferro 47.0 39 0.00085 19.4 3.3 24 17-40 99-122 (159)
434 PRK13361 molybdenum cofactor b 46.9 74 0.0016 20.5 4.8 39 18-56 49-90 (329)
435 COG3964 Predicted amidohydrola 46.4 37 0.0008 22.7 3.3 11 2-12 58-68 (386)
436 PRK00035 hemH ferrochelatase; 46.3 78 0.0017 20.4 6.1 39 17-55 105-151 (333)
437 PF08661 Rep_fac-A_3: Replicat 46.2 15 0.00032 19.9 1.4 19 40-58 91-109 (109)
438 TIGR02022 hutF formiminoglutam 46.1 6.7 0.00015 26.3 -0.0 11 2-12 52-62 (455)
439 PRK05096 guanosine 5'-monophos 45.9 45 0.00098 22.3 3.7 20 34-53 100-119 (346)
440 PRK09229 N-formimino-L-glutama 45.8 6.5 0.00014 26.3 -0.1 10 2-11 52-61 (456)
441 PF14234 DUF4336: Domain of un 45.8 67 0.0014 20.9 4.4 32 31-62 58-91 (285)
442 cd07036 TPP_PYR_E1-PDHc-beta_l 45.8 58 0.0013 19.1 3.9 32 32-63 15-51 (167)
443 TIGR02668 moaA_archaeal probab 45.8 75 0.0016 20.0 5.4 38 19-56 136-178 (302)
444 PRK13265 glycine/sarcosine/bet 45.7 39 0.00084 19.9 3.1 24 39-62 50-75 (154)
445 PLN02954 phosphoserine phospha 45.7 63 0.0014 19.1 4.5 35 15-49 85-119 (224)
446 PRK12487 ribonuclease activity 45.6 64 0.0014 19.1 4.2 41 20-65 76-116 (163)
447 PRK13288 pyrophosphatase PpaX; 45.6 62 0.0014 19.0 5.4 35 15-49 83-117 (214)
448 PLN02449 ferrochelatase 45.5 17 0.00037 25.2 1.8 53 13-65 334-399 (485)
449 COG4474 Uncharacterized protei 45.4 69 0.0015 19.4 5.4 43 19-61 31-76 (180)
450 PRK08508 biotin synthase; Prov 45.4 55 0.0012 20.7 4.0 20 18-37 41-63 (279)
451 cd02139 Nitroreductase_3 Nitro 45.3 35 0.00077 19.3 2.9 45 19-63 101-146 (164)
452 PRK01424 S-adenosylmethionine: 45.3 26 0.00056 23.5 2.6 23 17-40 256-278 (366)
453 TIGR03702 lip_kinase_YegS lipi 45.2 77 0.0017 19.9 6.1 36 17-52 39-74 (293)
454 PF01884 PcrB: PcrB family; I 45.1 77 0.0017 19.9 4.9 38 16-53 18-56 (230)
455 COG0800 Eda 2-keto-3-deoxy-6-p 45.1 75 0.0016 19.8 4.5 44 19-62 27-70 (211)
456 PF02633 Creatininase: Creatin 45.0 71 0.0015 19.5 4.4 23 19-41 88-110 (237)
457 PF13653 GDPD_2: Glycerophosph 45.0 27 0.00058 14.9 1.8 17 19-35 9-25 (30)
458 TIGR02478 6PF1K_euk 6-phosphof 44.8 71 0.0015 23.5 4.8 46 17-63 465-514 (745)
459 PRK10517 magnesium-transportin 44.7 50 0.0011 24.6 4.1 31 14-44 550-580 (902)
460 PF08282 Hydrolase_3: haloacid 44.7 56 0.0012 19.0 3.8 33 17-49 18-50 (254)
461 PRK08609 hypothetical protein; 44.5 61 0.0013 22.8 4.4 59 3-62 459-524 (570)
462 cd00945 Aldolase_Class_I Class 44.2 61 0.0013 18.5 3.9 21 18-38 14-34 (201)
463 PF04055 Radical_SAM: Radical 44.2 52 0.0011 17.7 3.5 14 19-32 129-142 (166)
464 PF01738 DLH: Dienelactone hyd 44.1 60 0.0013 19.1 3.9 42 23-65 86-130 (218)
465 PF03932 CutC: CutC family; I 44.1 74 0.0016 19.5 5.1 49 17-65 127-181 (201)
466 KOG1144 Translation initiation 44.0 47 0.001 25.0 3.8 48 17-65 809-856 (1064)
467 PF00682 HMGL-like: HMGL-like 43.9 72 0.0016 19.2 5.1 45 19-65 139-188 (237)
468 PLN02770 haloacid dehalogenase 43.9 75 0.0016 19.4 4.8 35 15-49 109-143 (248)
469 PF03437 BtpA: BtpA family; I 43.7 84 0.0018 20.0 5.8 49 17-65 158-211 (254)
470 COG0731 Fe-S oxidoreductases [ 43.6 92 0.002 20.4 5.4 32 13-44 91-123 (296)
471 PRK00129 upp uracil phosphorib 43.6 73 0.0016 19.2 5.6 39 19-58 140-178 (209)
472 TIGR01497 kdpB K+-transporting 43.6 52 0.0011 23.8 4.0 29 14-42 446-474 (675)
473 PRK13225 phosphoglycolate phos 43.5 83 0.0018 19.8 5.2 36 14-49 142-177 (273)
474 PRK13209 L-xylulose 5-phosphat 43.5 78 0.0017 19.5 6.1 20 19-38 101-120 (283)
475 COG2138 Sirohydrochlorin ferro 43.5 68 0.0015 20.2 4.2 49 17-65 47-104 (245)
476 TIGR01509 HAD-SF-IA-v3 haloaci 43.4 60 0.0013 18.2 5.1 29 15-43 86-114 (183)
477 COG0276 HemH Protoheme ferro-l 43.3 20 0.00044 23.5 1.9 27 13-39 239-265 (320)
478 COG0809 QueA S-adenosylmethion 43.3 37 0.0008 22.7 3.0 23 17-40 236-258 (348)
479 PRK08445 hypothetical protein; 43.2 92 0.002 20.5 4.9 41 18-58 77-123 (348)
480 PLN02485 oxidoreductase 43.1 50 0.0011 21.3 3.6 35 19-53 35-69 (329)
481 PRK01060 endonuclease IV; Prov 42.9 79 0.0017 19.4 6.8 50 1-55 1-60 (281)
482 PF10503 Esterase_phd: Esteras 42.9 70 0.0015 19.7 4.1 45 19-64 81-128 (220)
483 PRK05365 malonic semialdehyde 42.9 21 0.00045 21.1 1.8 42 22-63 131-173 (195)
484 TIGR01523 ATPase-IID_K-Na pota 42.7 59 0.0013 24.7 4.3 31 14-44 646-676 (1053)
485 TIGR01489 DKMTPPase-SF 2,3-dik 42.7 63 0.0014 18.2 4.8 34 15-48 73-106 (188)
486 COG0400 Predicted esterase [Ge 42.6 79 0.0017 19.3 4.4 44 21-65 86-132 (207)
487 PRK11579 putative oxidoreducta 42.6 91 0.002 20.0 5.6 14 40-53 100-113 (346)
488 TIGR01657 P-ATPase-V P-type AT 42.6 70 0.0015 24.2 4.6 33 14-46 656-688 (1054)
489 PRK13478 phosphonoacetaldehyde 42.4 81 0.0017 19.4 5.9 37 15-51 102-138 (267)
490 TIGR00338 serB phosphoserine p 42.4 71 0.0015 18.7 4.7 26 15-40 86-111 (219)
491 TIGR00113 queA S-adenosylmethi 42.3 31 0.00067 23.0 2.6 22 18-40 236-257 (344)
492 smart00812 Alpha_L_fucos Alpha 42.3 37 0.0008 22.7 3.0 22 17-38 81-102 (384)
493 PF13727 CoA_binding_3: CoA-bi 42.2 37 0.0008 18.9 2.7 39 16-55 127-168 (175)
494 PLN02639 oxidoreductase, 2OG-F 42.2 56 0.0012 21.2 3.8 35 19-53 52-86 (337)
495 cd01480 vWA_collagen_alpha_1-V 42.2 61 0.0013 18.8 3.7 35 18-53 128-162 (186)
496 PTZ00273 oxidase reductase; Pr 42.1 58 0.0013 20.9 3.8 35 20-54 27-61 (320)
497 PF04364 DNA_pol3_chi: DNA pol 42.1 54 0.0012 18.5 3.3 49 1-51 1-49 (137)
498 TIGR01662 HAD-SF-IIIA HAD-supe 42.1 57 0.0012 17.6 4.5 24 15-38 26-49 (132)
499 TIGR01106 ATPase-IIC_X-K sodiu 42.0 56 0.0012 24.5 4.1 31 14-44 568-598 (997)
500 COG0402 SsnA Cytosine deaminas 42.0 8.2 0.00018 25.6 -0.1 11 2-12 58-68 (421)
No 1
>PRK10812 putative DNAse; Provisional
Probab=99.91 E-value=5.3e-24 Score=132.18 Aligned_cols=66 Identities=23% Similarity=0.430 Sum_probs=62.2
Q ss_pred CceEeeccCCCC---CcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 1 MKLFDAHCHLQD---PRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 1 m~~iDsH~Hl~~---~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
|++|||||||+. ..|..|+++++++|+++||.+++++|+++++|.++++|+++||++++++|+|||
T Consensus 1 ~~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~ 69 (265)
T PRK10812 1 MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDNVVFSCGVHPL 69 (265)
T ss_pred CceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence 789999999984 456779999999999999999999999999999999999999999999999997
No 2
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=99.91 E-value=6.1e-24 Score=131.54 Aligned_cols=66 Identities=33% Similarity=0.573 Sum_probs=64.4
Q ss_pred CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
|++||+||||+.+.|.+|.++++++|+++||.+++++|++++++..+++|+++||++|+++|+||+
T Consensus 1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~G~HP~ 66 (256)
T COG0084 1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAVGVHPL 66 (256)
T ss_pred CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEEeeCCC
Confidence 789999999999889999999999999999999999999999999999999999999999999997
No 3
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=99.89 E-value=6.7e-23 Score=126.85 Aligned_cols=66 Identities=23% Similarity=0.444 Sum_probs=63.1
Q ss_pred CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
|.+||+||||+...+.++.++++++|+++||.+++++|+++++|.++++++++||++++++|+|||
T Consensus 3 ~~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~ 68 (258)
T PRK11449 3 CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAERYQPLYAALGLHPG 68 (258)
T ss_pred ceEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHHHHhCCCEEEEEeeCcC
Confidence 568999999998888889999999999999999999999999999999999999999999999997
No 4
>PRK10425 DNase TatD; Provisional
Probab=99.88 E-value=1.9e-22 Score=124.87 Aligned_cols=64 Identities=20% Similarity=0.393 Sum_probs=61.8
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
+||+||||+.+.+.+|.++++++|+++||.+++++|+++++|.++++++++||++++++|+|||
T Consensus 1 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~ 64 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQYPSCWSTAGVHPH 64 (258)
T ss_pred CEEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeCcC
Confidence 5899999998888899999999999999999999999999999999999999999999999997
No 5
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=99.77 E-value=9.3e-19 Score=107.78 Aligned_cols=63 Identities=35% Similarity=0.828 Sum_probs=56.0
Q ss_pred EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC-eEeeeeecCC
Q 035377 4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCFGVHPW 66 (66)
Q Consensus 4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-i~~~~GiHP~ 66 (66)
||+|||++...+.++.+++++++.+.|+..++.+++++++++.+.++++++|. +++++|+|||
T Consensus 1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~GiHP~ 64 (255)
T PF01026_consen 1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDPEDWERVLELASQYPDRVYPALGIHPW 64 (255)
T ss_dssp EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHHHTTTEEEEEE---GG
T ss_pred CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCHHHhHHHHHHHhcCCCeEEEEecCCcc
Confidence 89999999876788999999999999999999999999999999999999998 9999999997
No 6
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=99.69 E-value=1.5e-16 Score=96.45 Aligned_cols=64 Identities=31% Similarity=0.515 Sum_probs=58.3
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
+||+|||++...+..+++++++++.++|+..++++++++++++++.++++++|++++++|+|||
T Consensus 1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~GihP~ 64 (252)
T TIGR00010 1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTDLEDFLRALELAEKYPNVYAAVGVHPL 64 (252)
T ss_pred CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCEEEEEEeCcc
Confidence 6899999986554447999999999999999999999999999999999999999999999996
No 7
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=99.65 E-value=6.6e-16 Score=93.45 Aligned_cols=64 Identities=25% Similarity=0.490 Sum_probs=58.4
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
+||+|||++...+..+.+++++++.+.||.+++++++.+++++++.+++++++++++++|+||+
T Consensus 1 ~~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~~~~~~~~~~la~~~~~i~~~~G~hP~ 64 (251)
T cd01310 1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYDNVYAAVGLHPH 64 (251)
T ss_pred CEEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCeEEEEeeCcc
Confidence 6999999987554457899999999999999999999999999999999999999999999996
No 8
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=99.36 E-value=1.3e-12 Score=82.51 Aligned_cols=65 Identities=35% Similarity=0.513 Sum_probs=60.2
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC-CCeEeeeeecCC
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH-PSVIPCFGVHPW 66 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~GiHP~ 66 (66)
+++|.++|+.......+...++.+|...|+.+++++|++.++++.+++|+++| +.+++++|+|||
T Consensus 17 ~~~~~~~~~~~~~~~~d~s~v~~~a~~~~v~~~~v~gt~~~d~~~~~~l~~~y~~~v~~t~G~HP~ 82 (296)
T KOG3020|consen 17 MLEDIYCHIQAHPSDSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYPTFGVHPH 82 (296)
T ss_pred hhchhhhccccCCCCccchHHHHHHHhccceEEEEeCCCcchHHHHHHHHhhCCCceeeccCcCCC
Confidence 47899999988777778888999999999999999999999999999999999 569999999997
No 9
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=98.42 E-value=7.4e-07 Score=57.20 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=44.0
Q ss_pred ceEeeccCCCC--CcCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCC-CeEeee-----eecC
Q 035377 2 KLFDAHCHLQD--PRIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHP-SVIPCF-----GVHP 65 (66)
Q Consensus 2 ~~iDsH~Hl~~--~~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~-~i~~~~-----GiHP 65 (66)
.+||+|||+.. ..+..+.+ +.+...||..++.+++ .+.+++...+++++++ ++++++ |+||
T Consensus 51 G~ID~H~H~~~~~~~~~~~~~---~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~ 120 (365)
T TIGR03583 51 GWIDDHTHCFPKSALYYDEPD---EIGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVA 120 (365)
T ss_pred CEEEeeeccCCCcccccCCHh---HhhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhccccC
Confidence 48999999973 22334444 3357789999887665 6788888888888887 577765 8775
No 10
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=98.26 E-value=5.1e-06 Score=51.42 Aligned_cols=63 Identities=22% Similarity=0.159 Sum_probs=45.3
Q ss_pred eEeeccCCCCCcC------------CCCHHHHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 3 LFDAHCHLQDPRI------------FHKAPQLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 3 ~iDsH~Hl~~~~~------------~~~~~~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
.||||+|+....+ ...++++++.++..||.+.+++..+ ..+....++..+.++.+.+.++++|
T Consensus 2 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~~~~r~~g~~~~~p 78 (263)
T cd01311 2 AVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALASNGKARGGATVDP 78 (263)
T ss_pred CEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHhhCCCeEEEEEECC
Confidence 5899999975332 2468899999999999998777633 3345566666665556777777776
No 11
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=98.24 E-value=3.3e-06 Score=52.60 Aligned_cols=47 Identities=6% Similarity=0.014 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCC-CeEeeeeecCC
Q 035377 20 PQLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHP-SVIPCFGVHPW 66 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~-~i~~~~GiHP~ 66 (66)
.+.+++++++||..++.+|++ .+++..+.+++++++ ++++++|+||+
T Consensus 35 ~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~ 84 (293)
T cd00530 35 KEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKD 84 (293)
T ss_pred HHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCC
Confidence 356678899999999999985 478999999999998 79999999995
No 12
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=98.16 E-value=1.9e-06 Score=53.18 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=38.9
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccCh------h----hHHHHHHH----HHhCC-CeEeeeeecC
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSE------E----DWNLVKDM----SERHP-SVIPCFGVHP 65 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~------~----~~~~~~~l----~~~~~-~i~~~~GiHP 65 (66)
++||+|.|++...| + =++++..+||+.++.++-++ + -|++++.. ++++. +++.++|+||
T Consensus 1 ~~iD~HiH~d~r~~----e-DlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHP 74 (254)
T COG1099 1 MYIDSHIHLDVRGF----E-DLEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHP 74 (254)
T ss_pred CccccccccccccH----H-HHHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCC
Confidence 47999999986442 2 24566677998887766543 2 24444433 34444 4899999999
No 13
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=98.15 E-value=9.9e-06 Score=53.18 Aligned_cols=58 Identities=10% Similarity=0.291 Sum_probs=46.2
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhCC-CeEeee
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERHP-SVIPCF 61 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~~-~i~~~~ 61 (66)
.+||+|+|+..+.+ +.++..+.+...|+..++... .+.+.++..++.++++| ++|.++
T Consensus 10 G~ID~H~Hi~~~~~--~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 10 GFIDAHLHIESSML--TPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred CEEEccCCcCCCCC--ChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 38999999987543 456788889999999988753 67888999999888888 476655
No 14
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=97.57 E-value=9.5e-05 Score=44.26 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=43.5
Q ss_pred eEeeccCCCCCcCC--------------------CCHHHHHHHHHhcCCcEEEeeccCh------hhHHHHHHHHHhCCC
Q 035377 3 LFDAHCHLQDPRIF--------------------HKAPQLIATTVNSGVLHFAVNGVSE------EDWNLVKDMSERHPS 56 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~--------------------~~~~~~~~~~~~~gv~~~~~~~~~~------~~~~~~~~l~~~~~~ 56 (66)
+||+|+|+....+. ......+.++.+.||..++..+... +..+.+.+.+++.|+
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 58999998653221 2356777889999999887765432 467788888888753
Q ss_pred --eEeeeeecC
Q 035377 57 --VIPCFGVHP 65 (66)
Q Consensus 57 --i~~~~GiHP 65 (66)
++.+.|+++
T Consensus 81 ~~~~~~~~~~~ 91 (275)
T cd01292 81 IRVVLGLGIPG 91 (275)
T ss_pred eeeEEeccCCC
Confidence 555566654
No 15
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=97.44 E-value=0.00027 Score=44.83 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=41.0
Q ss_pred CceEeeccCCCCCcC--------------CCCHHHHHHHHHhcCCcEEEee--ccChhhHHHHHHHHHhCCCe
Q 035377 1 MKLFDAHCHLQDPRI--------------FHKAPQLIATTVNSGVLHFAVN--GVSEEDWNLVKDMSERHPSV 57 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~--------------~~~~~~~~~~~~~~gv~~~~~~--~~~~~~~~~~~~l~~~~~~i 57 (66)
+++||||.|+..... .-.+++..+.++..||.+.+.+ +.++.|++..++..++.++.
T Consensus 7 ~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~D~~~e~~~v~~~~~~ 79 (279)
T COG3618 7 QMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPRDNEKELAFVAELAER 79 (279)
T ss_pred ccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCccchHHHHHHHHhhHHh
Confidence 368999999975421 1258899999999999986555 45666888777766665543
No 16
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=97.34 E-value=0.0013 Score=41.69 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=43.5
Q ss_pred CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec----------cChhhHHHHHH----H---HH-hCCC-eEeee
Q 035377 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG----------VSEEDWNLVKD----M---SE-RHPS-VIPCF 61 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~----------~~~~~~~~~~~----l---~~-~~~~-i~~~~ 61 (66)
+.++|.|.|++... +...+.+++.+.+|=..++++. +..++++++.+ + ++ ..+. .++.+
T Consensus 5 ~~v~DnH~H~np~~--gg~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vv 82 (285)
T COG1831 5 IPVTDNHFHLNPKN--GGALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVV 82 (285)
T ss_pred cceecceeeecCCc--CcHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCceeEEEe
Confidence 35799999998633 3578899999999877766543 23456665443 2 22 2454 79999
Q ss_pred eecC
Q 035377 62 GVHP 65 (66)
Q Consensus 62 GiHP 65 (66)
|+||
T Consensus 83 GvHP 86 (285)
T COG1831 83 GVHP 86 (285)
T ss_pred ccCH
Confidence 9999
No 17
>PRK07328 histidinol-phosphatase; Provisional
Probab=97.33 E-value=0.0027 Score=39.62 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=29.2
Q ss_pred CceEeeccCCCCC-cCCCCHHHHHHHHHhcCCcEEEee
Q 035377 1 MKLFDAHCHLQDP-RIFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 1 m~~iDsH~Hl~~~-~~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
|+++|.|+|-... .-...+++++++|.+.|++.+...
T Consensus 1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~T 38 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFT 38 (269)
T ss_pred CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEe
Confidence 7789999998653 234579999999999999876543
No 18
>PRK08123 histidinol-phosphatase; Reviewed
Probab=97.16 E-value=0.0039 Score=38.98 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=28.7
Q ss_pred CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEee
Q 035377 1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
|+++|.|+|.....- .+.+++++++|.+.|+..+...
T Consensus 1 ~m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~t 39 (270)
T PRK08123 1 MMKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFT 39 (270)
T ss_pred CCccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 678999999865322 2468999999999999976543
No 19
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=97.13 E-value=0.0077 Score=29.98 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=37.0
Q ss_pred eeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeee
Q 035377 5 DAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 5 DsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
|.|+|-.... -...+++++++|++.|++.+.+.-. +.....+..++++++ ++..-.|
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~-gi~~i~G 60 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKA-GIKPIIG 60 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHc-CCeEEEE
Confidence 6788876442 2347999999999999997654332 244555666777765 3444444
No 20
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=97.09 E-value=0.0013 Score=40.35 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=28.4
Q ss_pred CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV 36 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~ 36 (66)
|+++|.|+|-... -...+++++++|.+.|++.+..
T Consensus 1 ~m~~DlHvHt~~d-~~~~~~e~i~~A~~~Gl~~i~i 35 (237)
T PRK00912 1 MKFYDLNVHAVPD-GYDTVLRLISEASHLGYSGIAL 35 (237)
T ss_pred CCceEeccCCCCC-CcchHHHHHHHHHHCCCCEEEE
Confidence 7899999998422 2557999999999999997654
No 21
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=97.07 E-value=0.0072 Score=34.52 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=37.7
Q ss_pred EeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377 4 FDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 4 iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
||.|||-... .-...+++++++|.+.|++.+.++-- +...+....+.+++. ++..-.|+
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~-~i~vi~G~ 62 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKK-GIKVIPGV 62 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHT-TSEEEEEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhc-CCceEEeE
Confidence 7999998654 33358999999999999997654332 344555556666653 44444453
No 22
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.05 E-value=0.00046 Score=42.71 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=25.8
Q ss_pred eEeeccCCCC--CcC---CCCHHHHHHHHHhcCCcEEEeec
Q 035377 3 LFDAHCHLQD--PRI---FHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 3 ~iDsH~Hl~~--~~~---~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
+||.|||+-. +.- .++...++++|...||..+++.+
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 5899999842 111 23455678899999999998754
No 23
>PRK09248 putative hydrolase; Validated
Probab=97.00 E-value=0.0094 Score=36.66 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.0
Q ss_pred eEeeccCCCCCc-CCCCHHHHHHHHHhcCCcEEEee
Q 035377 3 LFDAHCHLQDPR-IFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 3 ~iDsH~Hl~~~~-~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
++|.|+|-.... -...+++++++|.+.|++.+.+.
T Consensus 4 ~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~iT 39 (246)
T PRK09248 4 PVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAIT 39 (246)
T ss_pred ceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC
Confidence 789999986532 23479999999999999987654
No 24
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=96.75 E-value=0.008 Score=38.42 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=40.3
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc------Chhh-HHHHHHHHHhC-C-CeEeeeeecC
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV------SEED-WNLVKDMSERH-P-SVIPCFGVHP 65 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~-~~~~~~l~~~~-~-~i~~~~GiHP 65 (66)
+||.|||+-.+ +++....+.|...| ..++.... +.+. .++..++++++ + .+.+.+|+||
T Consensus 6 ~iD~h~h~~~~---~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 73 (335)
T cd01294 6 PDDMHLHLRDG---AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYL 73 (335)
T ss_pred cceeEecCCCc---hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEec
Confidence 79999999753 67888889999999 98876532 2232 33455566665 3 4666567765
No 25
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=96.73 E-value=0.014 Score=37.89 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=37.8
Q ss_pred ceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHhCC
Q 035377 2 KLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSERHP 55 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~~ 55 (66)
.+||.|+|+..+.+ .++.....+.|..-||..++.... +.+.++...+.+++.+
T Consensus 15 G~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~ 76 (374)
T cd01317 15 GLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVG 76 (374)
T ss_pred CEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCC
Confidence 37999999965332 468889999999999998886542 2344555555555544
No 26
>PRK08392 hypothetical protein; Provisional
Probab=96.38 E-value=0.022 Score=34.44 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=26.5
Q ss_pred EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377 4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV 36 (66)
Q Consensus 4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~ 36 (66)
||.|+|-....-...+++++++|.+.|++.+..
T Consensus 1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~i~i 33 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRLVGI 33 (215)
T ss_pred CccccCCCCcCCcCCHHHHHHHHHHcCCCEEEE
Confidence 699999865444567999999999999987644
No 27
>PRK07369 dihydroorotase; Provisional
Probab=96.36 E-value=0.026 Score=37.43 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=38.5
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhCC
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERHP 55 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~~ 55 (66)
.+||.|+|+..+. ..++....-+.|...||..++... .+.+.++...+.+++..
T Consensus 58 G~ID~H~H~~~~~~~~~e~~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~ 119 (418)
T PRK07369 58 GLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIP 119 (418)
T ss_pred CEEecccccCCCCcCCCccHHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccC
Confidence 3899999986533 346888888999999999887654 23455666666666543
No 28
>PRK08609 hypothetical protein; Provisional
Probab=96.36 E-value=0.032 Score=38.51 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=28.1
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
.+|.|||.....-..++++++++|.+.|++.+.+.
T Consensus 335 ~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~iT 369 (570)
T PRK08609 335 QGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMAIT 369 (570)
T ss_pred cCCccccCCCCCCCCCHHHHHHHHHHCCCCEEEEe
Confidence 47999998754434579999999999999987654
No 29
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=96.32 E-value=0.034 Score=36.18 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=37.2
Q ss_pred ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHh
Q 035377 2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSER 53 (66)
Q Consensus 2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~ 53 (66)
.+||.|+|+..+ ...+|++..-+.|..-||..++.+- .+.+.++...+.+++
T Consensus 7 G~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~ 66 (361)
T cd01318 7 GVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAA 66 (361)
T ss_pred CeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhcc
Confidence 379999999653 3467888888899999999877642 234556555566654
No 30
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=96.25 E-value=0.031 Score=36.30 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=37.8
Q ss_pred ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhC
Q 035377 2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERH 54 (66)
Q Consensus 2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~ 54 (66)
.+||.|+|+..+ ...++++.--+.|..-||..++..- .+.+.++...+.+++.
T Consensus 7 G~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~ 67 (344)
T cd01316 7 GLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAK 67 (344)
T ss_pred CeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccC
Confidence 379999999753 3457888888899999999887752 2345556666666653
No 31
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=96.24 E-value=0.004 Score=42.06 Aligned_cols=54 Identities=24% Similarity=0.424 Sum_probs=30.4
Q ss_pred CceEeeccCCCCCcC-----CCCHHHHH--------HHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 1 MKLFDAHCHLQDPRI-----FHKAPQLI--------ATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~-----~~~~~~~~--------~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
|++||-||||+..++ .+|+.+++ +.++.+||..-...| +..+.++-.++++..|
T Consensus 26 lPIiD~H~HL~p~~i~en~~f~~i~elwl~~DHYkwR~mra~Gv~E~~itg-~a~~~ekF~a~a~~~~ 92 (462)
T PF02614_consen 26 LPIIDYHCHLDPKEIAENRLFGNITELWLYGDHYKWRAMRANGVPEEFITG-DASPREKFRAWAETVP 92 (462)
T ss_dssp S-EEESS-S--HHHHHCTSB-SSHHHHHTSTTHHHHHHHHHTT-HGGGTTC-SSSHHHHHHHHHHHGG
T ss_pred CCEeCCCCCCChHHHhhcCCCCCHHHHhccCchhHHHHHHHcCCCccccCC-CCCCHHHHHHHHHhhh
Confidence 679999999985333 24455544 467889997544455 4456666666777654
No 32
>PRK02925 glucuronate isomerase; Reviewed
Probab=96.20 E-value=0.0043 Score=41.95 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=35.8
Q ss_pred CceEeeccCCCCCcCC-----CCHHHHH--------HHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377 1 MKLFDAHCHLQDPRIF-----HKAPQLI--------ATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~-----~~~~~~~--------~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
|++||-||||+..++. +|+.++. +.++.+||.-=.+.| +..+.++-.++++..|.
T Consensus 26 lPIiDyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~ITg-~as~~ekf~~~a~t~p~ 93 (466)
T PRK02925 26 LPIIDYHCHLDPKEIAENKPFKNITELWLKGDHYKWRAMRSNGVDEELITG-DASDREKFRAWAKTVPL 93 (466)
T ss_pred CceeCCCCCCCHHHHhccCCCCCHHHHhccCccHHHHHHHHcCCCHHHccC-CCCHHHHHHHHHHhhhh
Confidence 6799999999754332 4555554 467889997422233 44566666777776654
No 33
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=96.16 E-value=0.04 Score=39.88 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=41.4
Q ss_pred CceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377 1 MKLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 1 m~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
|+++|.|+|-... .-...+++++++|++.|+..+.++=. +.....+..+.+++. ++.+-+|+
T Consensus 1 m~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~-gik~I~G~ 65 (874)
T PRK09532 1 MSFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNK-GIKPIIGN 65 (874)
T ss_pred CCccccccCCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHc-CCeEEEEE
Confidence 7899999998654 22347999999999999997644321 233334455556654 56666664
No 34
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=95.95 E-value=0.06 Score=39.47 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=42.1
Q ss_pred CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeeee
Q 035377 1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
|.++|.|||-...-+ ...+++++++|++.|+..+.++= .+.....+..+.+++. ++.+-.|+
T Consensus 1 m~fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~-gIkpIiG~ 65 (973)
T PRK07135 1 MKLINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKN-NIKPIIGL 65 (973)
T ss_pred CCccccccCccCcccccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHc-CCeEEEeE
Confidence 678999999875422 34799999999999998765431 1334445555666664 56666664
No 35
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=95.93 E-value=0.061 Score=34.54 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=28.0
Q ss_pred ceEeeccCCCCCc---CCCCHHHHHHHHHhcCCcEEEee
Q 035377 2 KLFDAHCHLQDPR---IFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 2 ~~iDsH~Hl~~~~---~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
.+||.|+|+..+. ..++++.--+.|..-||..++..
T Consensus 6 G~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~m 44 (337)
T cd01302 6 GFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDM 44 (337)
T ss_pred CeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEEC
Confidence 3799999997544 34677778888888999987764
No 36
>PRK04250 dihydroorotase; Provisional
Probab=95.92 E-value=0.028 Score=37.08 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=34.9
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHhC
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSERH 54 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~ 54 (66)
.+||+|+|+.... ..+++....+.+...|+..++.... +.+.++...+++++.
T Consensus 48 G~ID~HvH~~~~~~~~~e~~~~~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~ 108 (398)
T PRK04250 48 GLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEKRMRIAEKK 108 (398)
T ss_pred CEEeccccccCCCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCCCCcHHHHHHHHHHhCcC
Confidence 3899999995322 2345667778888899988776532 244555556666554
No 37
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=95.82 E-value=0.071 Score=39.78 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=42.3
Q ss_pred CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377 1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
|+++|.|+|-...-+ ...+++++++|++.|+..+.++-- +.....+..+.+++. +|.+.+|+
T Consensus 1 m~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~-gIkpIiG~ 65 (1170)
T PRK07374 1 MAFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGK-GIKPIIGN 65 (1170)
T ss_pred CCcccccccCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHc-CCeEEEEe
Confidence 789999999875422 347999999999999997755422 234444445555553 56666664
No 38
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=95.82 E-value=0.032 Score=35.33 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=26.1
Q ss_pred eEeeccCCCCCcCCCC-------------HHHHHHHHHhcCCcEEEeeccChh
Q 035377 3 LFDAHCHLQDPRIFHK-------------APQLIATTVNSGVLHFAVNGVSEE 42 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~-------------~~~~~~~~~~~gv~~~~~~~~~~~ 42 (66)
+||+|+|+.......+ ...-.+++...||..+..+|....
T Consensus 15 liD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~ 67 (342)
T cd01299 15 LIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADY 67 (342)
T ss_pred eeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcch
Confidence 8999999964221111 113466778899999988875433
No 39
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=95.81 E-value=0.042 Score=36.15 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=37.4
Q ss_pred ceEeeccCCCCC-cCC----CCHHHHHHHHHhcCCcEEEeec--cChhhHHHHHHHHHhC---CCeEeeeeec
Q 035377 2 KLFDAHCHLQDP-RIF----HKAPQLIATTVNSGVLHFAVNG--VSEEDWNLVKDMSERH---PSVIPCFGVH 64 (66)
Q Consensus 2 ~~iDsH~Hl~~~-~~~----~~~~~~~~~~~~~gv~~~~~~~--~~~~~~~~~~~l~~~~---~~i~~~~GiH 64 (66)
.+||+|+|.... .+. ++++...+.+.+.||..++... ...++..++++..+++ +.-...+|+|
T Consensus 57 GfID~HvHg~~g~~~~~~~~e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~H 129 (380)
T TIGR00221 57 GFIDIHIHGCGGVDTNDASFETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLH 129 (380)
T ss_pred ceeeeeeccccCcCCCCCCHHHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEe
Confidence 389999997431 122 3566777888889998876433 2345555555443331 1223457777
No 40
>PRK07945 hypothetical protein; Provisional
Probab=95.79 E-value=0.079 Score=34.35 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=40.5
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec----------cChhh----HHHHHHHHHhCCCeEeeeee
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG----------VSEED----WNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~----------~~~~~----~~~~~~l~~~~~~i~~~~Gi 63 (66)
..|.|+|-....-...+++++++|.+.|++.+...- .+.++ +..+.++.++|+.+..-.|+
T Consensus 97 ~~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~Gi 171 (335)
T PRK07945 97 RGDLHTHSDWSDGGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGI 171 (335)
T ss_pred hhhcccccCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 479999987654456799999999999999765431 11222 33455667778765544443
No 41
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=95.77 E-value=0.038 Score=38.36 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=32.2
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccCh-------------hhHHHHHHHHHhCC
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSE-------------EDWNLVKDMSERHP 55 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~-------------~~~~~~~~l~~~~~ 55 (66)
.+||+|+|+..+. ..+.|...||..++..|+.+ +.+++.++.+++.|
T Consensus 130 G~ID~HvH~~~P~-------~~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~p 189 (567)
T cd00375 130 GGIDTHVHFICPQ-------QIEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLP 189 (567)
T ss_pred ceEECccCCCCcc-------HHHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCC
Confidence 3899999986433 24677888999888753333 55666666666655
No 42
>PRK01211 dihydroorotase; Provisional
Probab=95.63 E-value=0.072 Score=35.38 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=36.2
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec-c-----ChhhHHHHHHHHHh
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG-V-----SEEDWNLVKDMSER 53 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~-~-----~~~~~~~~~~l~~~ 53 (66)
.+||.|+|+..+. ..+|+..--+.|..-||..++..- + +.+.++...+.+++
T Consensus 47 G~ID~HvH~r~pg~~~ked~~s~s~AAaaGGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~ 106 (409)
T PRK01211 47 AATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMPNNNIPIKDYNAFSDKLGRVAP 106 (409)
T ss_pred CeEEeeeccCCCCCcccCcHHHHHHHHHcCCcEEEEECCCCCCCCChHHHHHHHHHHhcc
Confidence 3899999997633 467888888888889999877642 2 34445555555544
No 43
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=95.60 E-value=0.027 Score=35.28 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=27.2
Q ss_pred CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEE
Q 035377 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHF 34 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~ 34 (66)
|+.+|.|||-..+.-...+.+++++|.+.|+..+
T Consensus 1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vl 34 (258)
T COG0613 1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVL 34 (258)
T ss_pred CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEE
Confidence 5679999998754434458999999999999844
No 44
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.013 Score=39.45 Aligned_cols=54 Identities=22% Similarity=0.422 Sum_probs=35.3
Q ss_pred CceEeeccCCCCCcCC-----CCHHHHH--------HHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 1 MKLFDAHCHLQDPRIF-----HKAPQLI--------ATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~-----~~~~~~~--------~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
|+|||-|||++..++. +|+-++. +.++.+||..-.+.| +-++-++-+.+++.+|
T Consensus 25 lPIidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itg-d~sdrEkw~afa~~~~ 91 (463)
T COG1904 25 LPIIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITG-DTSDREKWRAFAKTVP 91 (463)
T ss_pred CCeeCCcCCCCHHHHhhcCCCCCHHHHhhcccHHHHHHHHHcCCchhhcCC-CCChHHHHHHHHHhhh
Confidence 6899999999853332 3333332 456788998655556 5566666667777665
No 45
>PRK09059 dihydroorotase; Validated
Probab=95.49 E-value=0.1 Score=34.71 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=38.1
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHhC--CCeEeeeee
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSERH--PSVIPCFGV 63 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~~--~~i~~~~Gi 63 (66)
.+||+|+|+..+. ..++++...+.+...||..++.... +.+.++..++.+++. -++++..++
T Consensus 61 G~ID~HvH~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~ 132 (429)
T PRK09059 61 GLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAI 132 (429)
T ss_pred cEEecccccCCCCchhhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEE
Confidence 3899999996422 2356666777888899998776432 234455556665543 235544444
No 46
>PRK10027 cryptic adenine deaminase; Provisional
Probab=95.48 E-value=0.078 Score=36.91 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=37.5
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe-------eccChhhHHHHHHHHHhCCC-eEe
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV-------NGVSEEDWNLVKDMSERHPS-VIP 59 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~-------~~~~~~~~~~~~~l~~~~~~-i~~ 59 (66)
.+||+|+|+...-. ..+++.+.+...|+..++. ++ +.+..+..++.+++-|. +|+
T Consensus 85 GlIDaHvHiess~~--~p~~~a~aal~~G~TtVv~dPhei~nv~-g~~gi~~~l~~a~~~p~~~~~ 147 (588)
T PRK10027 85 GFIDAHLHIESSMM--TPVTFETATLPRGLTTVICDPHEIVNVM-GEAGFAWFARCAEQARQNQYL 147 (588)
T ss_pred CeEeccccCCcccC--CHhHHHHHHHhCceEEEEcCCCCcccCC-CHHHHHHHHHHhhhCCCeeEE
Confidence 38999999975432 4566677778889988765 22 45666777777776664 444
No 47
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=95.39 E-value=0.075 Score=36.64 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=36.2
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe------eccChhhHHHHHHHHHhCCC-eEe
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV------NGVSEEDWNLVKDMSERHPS-VIP 59 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~------~~~~~~~~~~~~~l~~~~~~-i~~ 59 (66)
.+||+|+|+..... ..++..+.+...|+..++. .....+.++..++.+++.|- +|.
T Consensus 51 G~ID~H~Hi~~~~~--~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~ 113 (552)
T TIGR01178 51 GFIDAHIHIESSML--TPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYF 113 (552)
T ss_pred CeEecccccCCCCC--ChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEE
Confidence 38999999975433 2345566677789887764 12356667777777666552 443
No 48
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=95.30 E-value=0.16 Score=31.47 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=25.7
Q ss_pred EeeccCCCCC-cCCCCHHHHHHHHHhcCCcEEEe
Q 035377 4 FDAHCHLQDP-RIFHKAPQLIATTVNSGVLHFAV 36 (66)
Q Consensus 4 iDsH~Hl~~~-~~~~~~~~~~~~~~~~gv~~~~~ 36 (66)
+|.|+|.... .-.+.+++++++|.+.|++.+..
T Consensus 1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~~ 34 (253)
T TIGR01856 1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEICF 34 (253)
T ss_pred CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEEe
Confidence 4889998643 23457999999999999997654
No 49
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=95.30 E-value=0.16 Score=37.96 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=39.8
Q ss_pred CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377 1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
|+++|.|+|-...-+ ...+++++++|++.|+..+.++-- +.....+..+.+++. ++.+-+|+
T Consensus 3 m~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~-gIkpIiG~ 67 (1151)
T PRK06826 3 MSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQ-GIKPIIGC 67 (1151)
T ss_pred CcceeccccccCChhhhcCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhC-CCEEEEEE
Confidence 458999999865422 347999999999999997754321 223333444555554 46665554
No 50
>PRK00369 pyrC dihydroorotase; Provisional
Probab=95.23 E-value=0.12 Score=34.09 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=35.7
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHh
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSER 53 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~ 53 (66)
.+||.|+|+..+. ..++++.--..|..-||..++.+.. +.+.++...+.+++
T Consensus 48 G~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~l~~~~~~a~~ 107 (392)
T PRK00369 48 GAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMPNTIPPLNTPEAITEKLAELEY 107 (392)
T ss_pred CEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCc
Confidence 3899999997533 4578888888889999998876532 23444444555544
No 51
>PRK09236 dihydroorotase; Reviewed
Probab=95.21 E-value=0.14 Score=34.07 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=27.9
Q ss_pred ceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+..... .+++....+.+...||..++..+
T Consensus 55 G~ID~HvH~~~~~~~~~e~~~~~~~aa~~~GvTtv~d~p 93 (444)
T PRK09236 55 GMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP 93 (444)
T ss_pred CEEEcccccccCcccccccHHHHHHHHHhCCcEEEEeCC
Confidence 38999999864322 35666777888999999888765
No 52
>PRK06189 allantoinase; Provisional
Probab=94.90 E-value=0.14 Score=34.07 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=35.1
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec--c-----ChhhHHHHHHHHHh
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG--V-----SEEDWNLVKDMSER 53 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~--~-----~~~~~~~~~~l~~~ 53 (66)
.+||+|+|+..+. ..+++....+.+...||..++... + +.+.+....++++.
T Consensus 55 G~ID~H~H~~~~~~~~~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~ 115 (451)
T PRK06189 55 GMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQ 115 (451)
T ss_pred CEEEeeeccCCCCCCCcccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCc
Confidence 3899999997532 245777777888889998877542 2 34456566666654
No 53
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=94.81 E-value=0.028 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=16.1
Q ss_pred eEeeccCCCCCcC-CCCHHHHHHHHHhcCCc
Q 035377 3 LFDAHCHLQDPRI-FHKAPQLIATTVNSGVL 32 (66)
Q Consensus 3 ~iDsH~Hl~~~~~-~~~~~~~~~~~~~~gv~ 32 (66)
|||+|+|+..... ..+.+.....+.+.||.
T Consensus 36 ~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvT 66 (68)
T PF13594_consen 36 FIDMHTHLGEPGWQSLDPETEAAAALAGGVT 66 (68)
T ss_dssp EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEE
T ss_pred eEeeeeccccccccccchhhHHHHHHCccee
Confidence 8999999873221 22334444444466653
No 54
>PRK02382 dihydroorotase; Provisional
Probab=94.80 E-value=0.16 Score=33.74 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=33.9
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHh
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSER 53 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~ 53 (66)
.+||+|+|+.... ..+++....+.+...||..++.... +.+.++...+.+++
T Consensus 55 G~ID~H~H~~~~g~~~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~ 114 (443)
T PRK02382 55 GGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAAR 114 (443)
T ss_pred CEeeeeeeccCCCCCchhhHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCc
Confidence 3899999986532 2356677778888899988775432 23345555555544
No 55
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=94.74 E-value=0.1 Score=36.32 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=30.5
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee---------ccChhhHHHHHHHHHhCC
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN---------GVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~---------~~~~~~~~~~~~l~~~~~ 55 (66)
.+||+|+|+..+. ..+.|...||..++.- ...++.++..++.++..|
T Consensus 134 G~ID~HVH~~~Pg-------~~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~p 189 (569)
T PRK13308 134 GAIDVHVHFDSAQ-------LVDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWP 189 (569)
T ss_pred CEEEeeeCCCCcc-------HHHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCC
Confidence 3899999986532 2267788899888752 223455666666666554
No 56
>PRK07627 dihydroorotase; Provisional
Probab=94.71 E-value=0.23 Score=33.03 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=27.9
Q ss_pred ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEee
Q 035377 2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
.+||.|+|+..+ ...++++...+.|...||..++..
T Consensus 56 G~iD~H~H~~~~g~~~~e~~~t~s~aa~~gGvTtv~~~ 93 (425)
T PRK07627 56 GLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCP 93 (425)
T ss_pred cEEeccccccCCCccccCcHHHHHHHHHhCCeeEEEeC
Confidence 389999999543 235678888899999999987743
No 57
>PRK05588 histidinol-phosphatase; Provisional
Probab=94.61 E-value=0.079 Score=32.75 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=25.4
Q ss_pred eEeeccCCCCC-cCCCCHHHHHHHHHhcCCcEE
Q 035377 3 LFDAHCHLQDP-RIFHKAPQLIATTVNSGVLHF 34 (66)
Q Consensus 3 ~iDsH~Hl~~~-~~~~~~~~~~~~~~~~gv~~~ 34 (66)
++|.|+|.... .-.+.+++.+++|.+.|++.+
T Consensus 1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~~ 33 (255)
T PRK05588 1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGII 33 (255)
T ss_pred CeeecccCCCCCCcccCHHHHHHHHHHcCCCEE
Confidence 48999998653 334579999999999999844
No 58
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=94.41 E-value=0.3 Score=32.15 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=26.0
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEee
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
.+||.|+|+.... ..+++....+.+...|+..++..
T Consensus 40 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~ 77 (411)
T TIGR00857 40 GFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADM 77 (411)
T ss_pred CEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEe
Confidence 3899999996421 23456667778888999987764
No 59
>PRK13404 dihydropyrimidinase; Provisional
Probab=94.36 E-value=0.28 Score=33.06 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=28.3
Q ss_pred ceEeeccCCCCC-----cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDP-----RIFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~-----~~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+..+ .+.+++......+...||..++..+
T Consensus 55 G~ID~H~H~~~~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~~ 96 (477)
T PRK13404 55 GGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFA 96 (477)
T ss_pred CEEEeEEcCCccccCCccccchHHHHHHHHHcCCccEEEEcc
Confidence 389999999542 2346777888888899999888755
No 60
>PRK08044 allantoinase; Provisional
Probab=94.24 E-value=0.24 Score=33.09 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=37.2
Q ss_pred eEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec--c-----ChhhHHHHHHHHHhC
Q 035377 3 LFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG--V-----SEEDWNLVKDMSERH 54 (66)
Q Consensus 3 ~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~--~-----~~~~~~~~~~l~~~~ 54 (66)
+||.|+|+..+ ...+++....+.+...||..++..+ + +.+.++...+.+++.
T Consensus 55 ~iD~h~h~~~~~~~~~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~ 115 (449)
T PRK08044 55 MVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGK 115 (449)
T ss_pred eeccccccCCCCccccccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccC
Confidence 79999999642 2356788888999999999888765 1 345555556655543
No 61
>PLN02795 allantoinase
Probab=94.19 E-value=0.17 Score=34.36 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=26.1
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+..+. ..++.....+.+...||..++..-
T Consensus 100 G~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp 138 (505)
T PLN02795 100 GLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMP 138 (505)
T ss_pred CEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCC
Confidence 3899999997533 234566666777778998877654
No 62
>PRK09357 pyrC dihydroorotase; Validated
Probab=94.01 E-value=0.53 Score=30.93 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=26.4
Q ss_pred ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+..+ ...+++....+.+...||..++...
T Consensus 54 G~ID~H~H~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~ 92 (423)
T PRK09357 54 GLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP 92 (423)
T ss_pred CEEecccccCCCCccccccHHHHHHHHHhCCCeEEEecC
Confidence 389999998542 2235666666777888998887654
No 63
>PRK09060 dihydroorotase; Validated
Probab=93.98 E-value=0.31 Score=32.51 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=34.3
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc------ChhhHHHHHHHHHh
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV------SEEDWNLVKDMSER 53 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~~~~~l~~~ 53 (66)
.+||+|+|+..+. ..+++....+.+...||..++.... +.+.+...++.+++
T Consensus 57 G~ID~HvH~~~~~~~~~e~~~t~~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~ 116 (444)
T PRK09060 57 GVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARH 116 (444)
T ss_pred CEEeccccccCCCCCccchHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcc
Confidence 3899999986432 2357778888889999998776432 23445444554443
No 64
>PRK07575 dihydroorotase; Provisional
Probab=93.96 E-value=0.32 Score=32.35 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=27.5
Q ss_pred ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+... ...+++....+.+...||..++...
T Consensus 57 G~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTt~~dmp 95 (438)
T PRK07575 57 GVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP 95 (438)
T ss_pred cEEEeeeccCCCCCcCcchHHHHHHHHHhCCEEEEEECC
Confidence 389999998643 2345777778888889998877653
No 65
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=93.89 E-value=0.15 Score=33.23 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=28.7
Q ss_pred ceEeeccCCCC-CcC----CCCHHHHHHHHHhcCCcEEEeec--cChhhHHH
Q 035377 2 KLFDAHCHLQD-PRI----FHKAPQLIATTVNSGVLHFAVNG--VSEEDWNL 46 (66)
Q Consensus 2 ~~iDsH~Hl~~-~~~----~~~~~~~~~~~~~~gv~~~~~~~--~~~~~~~~ 46 (66)
.+||+|+|... ..+ .+++....+.+.+.||..++... ..++...+
T Consensus 52 G~iD~H~H~~~g~~~~~~~~e~~~~~~~~~~~~GvTtv~~t~~t~~~~~~~~ 103 (374)
T cd00854 52 GFIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTTSFLPTTVTAPPEEIAK 103 (374)
T ss_pred cEEEeeecccCCCCCCCCCHHHHHHHHHHHHccCcceeeccccCCCHHHHHH
Confidence 38999999853 112 13456667788889999877654 23444433
No 66
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=93.87 E-value=0.39 Score=31.72 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=27.2
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+..+. ..+++...-+.+...||..++...
T Consensus 53 G~ID~H~H~~~~~~~~~e~~~~~s~aal~gGvTtv~d~p 91 (447)
T cd01315 53 GLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMP 91 (447)
T ss_pred cEeeceeccCCCCccccccHHHHHHHHHhCCceEEEeCC
Confidence 3899999997432 235666677778889999887764
No 67
>PRK08417 dihydroorotase; Provisional
Probab=93.84 E-value=0.2 Score=32.85 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=28.1
Q ss_pred ceEeeccCCCCCcC-CCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDPRI-FHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~-~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||.|+|+..+.+ .++++...+.|...||..++.+.
T Consensus 31 G~ID~HvH~~~~~~~~e~~~t~s~aA~aGGvTtv~dmp 68 (386)
T PRK08417 31 ALVDLNVSLKNDSLSSKNLKSLENECLKGGVGSIVLYP 68 (386)
T ss_pred CeeEEeeeeCCCCcChhhHHHHHHHHHcCCcEEEEeCC
Confidence 38999999965322 35677788888889999887764
No 68
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=93.82 E-value=0.44 Score=31.42 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=34.2
Q ss_pred eEeeccCCCC-CcCC--------CCHHHHHHHHHhcCCcEEEeec--cChhhHHHHHHHHHhC--CCeEeeeeec
Q 035377 3 LFDAHCHLQD-PRIF--------HKAPQLIATTVNSGVLHFAVNG--VSEEDWNLVKDMSERH--PSVIPCFGVH 64 (66)
Q Consensus 3 ~iDsH~Hl~~-~~~~--------~~~~~~~~~~~~~gv~~~~~~~--~~~~~~~~~~~l~~~~--~~i~~~~GiH 64 (66)
+||+|+|... ..+. +.++.+.+.+.+.|+..++-.. ...++..++++..+++ ++-...+|+|
T Consensus 55 ~ID~HvHG~~g~~~~~~~~~~~~~~l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~H 129 (382)
T PRK11170 55 FIDLQLNGCGGVQFNDTAEAISVETLEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLH 129 (382)
T ss_pred eeeeeecCccCcccccCccCCCHHHHHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8999999642 1111 2344444556788999877433 2445555554443332 1223467777
No 69
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=93.69 E-value=0.6 Score=35.26 Aligned_cols=54 Identities=9% Similarity=0.128 Sum_probs=38.8
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCC
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHP 55 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~ 55 (66)
+.+|.|+|-.... -...+++++++|.+.|+..+.++=- +...+..+.+.+++++
T Consensus 103 krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~~ 159 (1213)
T TIGR01405 103 KRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDG 159 (1213)
T ss_pred ceEEeeeCccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhcC
Confidence 4689999986542 2347999999999999997654321 3556777777777753
No 70
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=93.68 E-value=0.046 Score=34.04 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=26.3
Q ss_pred ceEeeccCCCCCcCC---------CCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDPRIF---------HKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~---------~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+....+. .......+++.+.|+..++..+
T Consensus 5 GlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~ 50 (333)
T PF01979_consen 5 GLIDAHVHGGQGGLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTP 50 (333)
T ss_dssp -EEEEEEEGGGTTHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ChhHHhhCcCCcCccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCc
Confidence 389999999754433 2345566788889999888763
No 71
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=93.58 E-value=0.65 Score=34.54 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=40.6
Q ss_pred ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeeee
Q 035377 2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
.++|.|||-... .-...+++++++|++.|...+.++= .+.....+..+.++++ ++.+-.|+
T Consensus 4 ~fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~-gIkpI~G~ 67 (1046)
T PRK05672 4 PYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKEL-GLRLVIGA 67 (1046)
T ss_pred ceeeccccccCcccccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHC-CCEEEEEE
Confidence 478999997653 2234799999999999998765432 1344445555666665 46666654
No 72
>PRK08323 phenylhydantoinase; Validated
Probab=93.47 E-value=0.56 Score=31.06 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=25.8
Q ss_pred ceEeeccCCCCC----cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDP----RIFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~----~~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+..+ ...++.....+.+...||..++...
T Consensus 50 GlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~ 90 (459)
T PRK08323 50 GGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFA 90 (459)
T ss_pred cEEeeeeccccccCCccccCcHHHHHHHHHhCCCCEEEeCc
Confidence 389999999642 1234565556677788999887654
No 73
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=93.44 E-value=0.57 Score=35.10 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=40.1
Q ss_pred ceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377 2 KLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
.++|.|+|-...-+ ...+++++++|++.|+..+.++-- +.....+..+.+++. +|.+-+|+
T Consensus 1 ~fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~-gIkpIiG~ 64 (1135)
T PRK05673 1 RFVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGA-GIKPIIGC 64 (1135)
T ss_pred CcccceecccCchhhhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHc-CCeEEEEE
Confidence 37899999865322 347999999999999997754321 233444445555654 56666664
No 74
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=93.39 E-value=0.52 Score=27.22 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=38.4
Q ss_pred ceEeeccCCCCCc-------------CCCCHHHHHHHHHhcCCcEEEee-ccChhhHHHHHHHHHh
Q 035377 2 KLFDAHCHLQDPR-------------IFHKAPQLIATTVNSGVLHFAVN-GVSEEDWNLVKDMSER 53 (66)
Q Consensus 2 ~~iDsH~Hl~~~~-------------~~~~~~~~~~~~~~~gv~~~~~~-~~~~~~~~~~~~l~~~ 53 (66)
.++|+|.|....+ ++.|...+|...++.||.-+++. +.+++...+.+++.+.
T Consensus 19 ~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkv 84 (144)
T KOG4549|consen 19 RLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKV 84 (144)
T ss_pred EEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhcc
Confidence 3799999975432 35778899999999999876543 4577777777776553
No 75
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=93.25 E-value=0.63 Score=35.72 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=39.4
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCC
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHP 55 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~ 55 (66)
+.||.|+|-.... -...+++++++|.+.|+..+.++= .+...+..+.+.+++++
T Consensus 333 KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~g 389 (1437)
T PRK00448 333 KRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAG 389 (1437)
T ss_pred ceEEecccccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcC
Confidence 5799999987653 334799999999999999764431 13556777777777764
No 76
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.24 E-value=0.68 Score=34.34 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=39.3
Q ss_pred eEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377 3 LFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 3 ~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
++|.|+|-... .-...+++++++|++.|+..+.++-- +.....+..+.+++. +|.+-+|+
T Consensus 1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~-gIkpI~G~ 63 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKA-GIKPIIGC 63 (1022)
T ss_pred CeeeeecccCccccccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHc-CCeEEEEE
Confidence 57899997643 22357999999999999998755421 233344445555553 56666664
No 77
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=93.08 E-value=0.53 Score=31.25 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=26.5
Q ss_pred ceEeeccCCCCC--cCCCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDP--RIFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~--~~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+... ...+++....+.+...||..++...
T Consensus 52 G~ID~H~H~~~~~~~~~~~~~~~~~~~~~gGvTtv~dmp 90 (443)
T TIGR03178 52 GVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMP 90 (443)
T ss_pred cEeccccccCCCCccccchHHHHHHHHHcCCeEEEEECC
Confidence 389999999642 2235666666777888998877754
No 78
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=92.79 E-value=0.47 Score=31.35 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=25.1
Q ss_pred ceEeeccCCCCCc----CCCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDPR----IFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~~----~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+...- ..+++....+.+...||..++...
T Consensus 52 GlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTtv~d~~ 92 (447)
T cd01314 52 GGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFA 92 (447)
T ss_pred CEEeccccccccccCccCcchHHHHHHHHHhCCCcEEEeCC
Confidence 3899999996421 234555555667778998887654
No 79
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=92.76 E-value=0.78 Score=29.68 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=24.8
Q ss_pred eEeeccCCCC----Cc-CCCCHHHHHHHHHhcCCcEEEeec
Q 035377 3 LFDAHCHLQD----PR-IFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 3 ~iDsH~Hl~~----~~-~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
+||+|+|+.. +. ...+.+....++...|+..++.+.
T Consensus 58 ~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvvd~~ 98 (388)
T PRK10657 58 FIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVVGLL 98 (388)
T ss_pred ceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEECCC
Confidence 8999999862 11 123455667888889998887654
No 80
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=92.73 E-value=0.41 Score=33.44 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=22.2
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccC
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
+||+|+|+..+. ..+.|...||..++..++.
T Consensus 131 ~ID~HvH~~~P~-------~~~aALagGVTTVi~mg~g 161 (568)
T PRK13207 131 GIDTHIHFICPQ-------QIEEALASGVTTMIGGGTG 161 (568)
T ss_pred eEECccCCcccc-------HHHHHHcCCCCEEEcCCcC
Confidence 899999986432 1466778899888775443
No 81
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=92.60 E-value=0.6 Score=28.15 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=16.5
Q ss_pred EeeccCCCCCcCCCCHHHHHHHHHhcCCcE
Q 035377 4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLH 33 (66)
Q Consensus 4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~ 33 (66)
||+|+|+. ........+....+.++..
T Consensus 1 ID~H~H~~---~~~~~~~~~~~~~~~~~~~ 27 (273)
T PF04909_consen 1 IDAHIHLP---GEWDPEERLPEMDKQGVDR 27 (273)
T ss_dssp EEEEEEEG---GGTCHHHHHHHHHHHTEEE
T ss_pred CcCcccCC---CCcCchhhhhHHHhcCCch
Confidence 89999982 1234555566666666543
No 82
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=92.59 E-value=0.55 Score=30.01 Aligned_cols=59 Identities=7% Similarity=-0.112 Sum_probs=42.2
Q ss_pred cCCCCCc-CCCCHHHHHHHHHhcCCcEEEeeccCh----------hhHHHHHHHHHhC-CC-eEeeeeecCC
Q 035377 8 CHLQDPR-IFHKAPQLIATTVNSGVLHFAVNGVSE----------EDWNLVKDMSERH-PS-VIPCFGVHPW 66 (66)
Q Consensus 8 ~Hl~~~~-~~~~~~~~~~~~~~~gv~~~~~~~~~~----------~~~~~~~~l~~~~-~~-i~~~~GiHP~ 66 (66)
.||.--. -...+.+.+..+.+.||+.+++++.++ .+...++++.+++ .+ ...+++.+|.
T Consensus 82 ~Hltc~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe 153 (291)
T COG0685 82 PHLTCRDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPE 153 (291)
T ss_pred eeecccCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 4665321 123577889999999999999887776 2566788888865 34 6668888884
No 83
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.97 E-value=1.2 Score=28.04 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
-.++.+++++++|+++++++...+++.+...+.++++.
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~g 142 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHG 142 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcC
Confidence 46777888888888888777777777777777777664
No 84
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.95 E-value=0.89 Score=28.11 Aligned_cols=49 Identities=10% Similarity=0.185 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccC---hhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVS---EEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~---~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
..+.++.++++.+.|++++++.... .++..+.++.++++ ++.+.+-++|
T Consensus 87 ~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~-Gl~~~~~v~p 138 (244)
T PRK13125 87 VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNK-GLKPVFFTSP 138 (244)
T ss_pred hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHc-CCCEEEEECC
Confidence 3455666666666666666554321 24444555555554 3444444444
No 85
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=91.94 E-value=0.54 Score=30.05 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=22.9
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+..+.. +..+..-+.|...||..++..+
T Consensus 35 G~iD~H~H~~~~g~-~~~~~~~~~a~~~GvTtvvd~~ 70 (338)
T cd01307 35 GWIDLHVHVYQGGT-RYGDRPDMIGVKSGVTTVVDAG 70 (338)
T ss_pred CeEEeeecCCCCCc-ccCCCHhHHHHcCceeEEEeCC
Confidence 38999999975432 1112233456778999887554
No 86
>PLN02942 dihydropyrimidinase
Probab=91.87 E-value=1.7 Score=29.40 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=24.5
Q ss_pred ceEeeccCCCCCc----CCCCHHHHHHHHHhcCCcEEEee
Q 035377 2 KLFDAHCHLQDPR----IFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 2 ~~iDsH~Hl~~~~----~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
.+||+|+|+.... ..+++..--..|...|+..++..
T Consensus 58 G~ID~H~H~~~~~~~~~~~ed~~s~s~aAl~gGvTTv~D~ 97 (486)
T PLN02942 58 GGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDF 97 (486)
T ss_pred CEeeeeeccCcccCCCcccchHHHHHHHHHcCCCeEEEeC
Confidence 3899999997542 23455555566777888877654
No 87
>PRK13985 ureB urease subunit beta; Provisional
Probab=91.85 E-value=0.43 Score=33.32 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=20.9
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
+||+|+|+..+.. .+.|...||..++..|+
T Consensus 131 ~ID~HvH~~~P~~-------~~~AlagGVTTvI~~G~ 160 (568)
T PRK13985 131 GIDTHIHFISPQQ-------IPTAFASGVTTMIGGGT 160 (568)
T ss_pred EEEeeCCCCCccH-------HHHHhcCceEEEEccCc
Confidence 8999999854321 24577889988876433
No 88
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=91.68 E-value=0.71 Score=30.46 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=25.3
Q ss_pred ceEeeccCCCCC---c-CCCCHHHHHHHHHhcCCcEEEeecc
Q 035377 2 KLFDAHCHLQDP---R-IFHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 2 ~~iDsH~Hl~~~---~-~~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
.+||+|+|+... . ..++.....+.+...||..++....
T Consensus 52 GlID~H~H~~~~~~~~~~~e~~~~~s~~a~~~GvTtv~d~~~ 93 (454)
T TIGR02033 52 GGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFAL 93 (454)
T ss_pred CEecceeccCcccCCCCCcchHHHHHHHHHhCCCCEEEeCcC
Confidence 389999999642 1 1234444456677789998877653
No 89
>PRK09237 dihydroorotase; Provisional
Probab=91.62 E-value=0.44 Score=30.89 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=28.8
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHH
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSE 52 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~ 52 (66)
.+||+|+|+.... .......-+.+...|+..++..+. .+.+.+...+...
T Consensus 54 G~iD~H~H~~~~~-~~~~~~~~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~ 104 (380)
T PRK09237 54 GWIDLHVHVYPGS-TPYGDEPDEVGVRSGVTTVVDAGSAGADNFDDFRKLTI 104 (380)
T ss_pred CEEEeeecCCCCC-CccCCCHHHHHHhCCcCEEEECCCCCCCCHHHHHHHHH
Confidence 3899999997421 111113335567889988776553 3444444444444
No 90
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=91.55 E-value=0.75 Score=29.93 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=21.4
Q ss_pred ceEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeecc
Q 035377 2 KLFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
.+||+|+|+...... .+.+ ..+...|+..++..|.
T Consensus 57 GliD~H~H~~~~g~~~~~~~~---~~~l~~G~Ttv~d~g~ 93 (379)
T PRK12394 57 GLIDYHAHVFYDGTEGGVRPD---MYMPPNGVTTVVDAGS 93 (379)
T ss_pred CEEEeeecCCCCCcccccCHH---HHHHhCCccEEEECCC
Confidence 389999998542211 1222 2356678888877664
No 91
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=91.44 E-value=1.4 Score=27.90 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=24.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
-.++.++++.++|+++++++-..+++..+..+.++++
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~ 143 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLY 143 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHc
Confidence 3566677777777777766666666666666666655
No 92
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=91.13 E-value=2.1 Score=26.47 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=27.4
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV 36 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~ 36 (66)
.+|.|.|.....-..+..+.+++|.+.|.+.+..
T Consensus 2 ~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~i 35 (237)
T COG1387 2 KIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAI 35 (237)
T ss_pred CcccccCcccccCCCCHHHHHHHHHHcCCeEEEE
Confidence 4799999876554568888999999999987654
No 93
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=91.07 E-value=0.6 Score=32.64 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=29.3
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccC-------------hhhHHHHHHHHHhCC
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVS-------------EEDWNLVKDMSERHP 55 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~-------------~~~~~~~~~l~~~~~ 55 (66)
.+||+|+|+..+.+ .+.|...||..++..|+. ...+++.++.+++.|
T Consensus 134 G~ID~HvH~~~P~~-------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~p 193 (572)
T PRK13309 134 AGIDTHIHLISPQQ-------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLP 193 (572)
T ss_pred CEEEeecccCCcch-------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCC
Confidence 37999999865432 246777898887743322 224556656666554
No 94
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=91.00 E-value=2.4 Score=26.03 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=28.4
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhh-HHHHHHHHHhCCCeEeeeeecC
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEED-WNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~-~~~~~~l~~~~~~i~~~~GiHP 65 (66)
++|.|.+.+ +.+..++.+.+.|+..+.+-+-.... ..+.++..++. +...++.+.|
T Consensus 67 ~lDvHLm~~------~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~-G~~~gval~p 123 (228)
T PTZ00170 67 FLDCHLMVS------NPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREA-GMKVGVAIKP 123 (228)
T ss_pred CEEEEECCC------CHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHC-CCeEEEEECC
Confidence 468887743 35556666666666644333322222 44555555554 2334444444
No 95
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=90.92 E-value=2.1 Score=25.47 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHH-HHHhCCCeEeeeeecC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKD-MSERHPSVIPCFGVHP 65 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~-l~~~~~~i~~~~GiHP 65 (66)
..++++++.+.| .++..+|..++..+++.+ +.++||++..+ |.|+
T Consensus 37 ~~~l~~~~~~~~-~~vfllG~~~~v~~~~~~~l~~~yP~l~i~-g~~g 82 (177)
T TIGR00696 37 MEELCQRAGKEK-LPIFLYGGKPDVLQQLKVKLIKEYPKLKIV-GAFG 82 (177)
T ss_pred HHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHHHCCCCEEE-EECC
Confidence 457888888888 457778999888777654 66779986533 4454
No 96
>PLN02591 tryptophan synthase
Probab=90.90 E-value=2 Score=27.01 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
-.++.+++++++|+++++++-..+++.++..+.++++.
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~g 131 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNG 131 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcC
Confidence 35667777777777777777666666666666666653
No 97
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=90.50 E-value=2.1 Score=26.49 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
.+..++++.++|+++++++-..+++..+.++.++++
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~ 128 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEY 128 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHc
Confidence 466666677777766666555556665666655554
No 98
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=90.45 E-value=1.7 Score=27.62 Aligned_cols=59 Identities=7% Similarity=-0.065 Sum_probs=37.1
Q ss_pred cCCCCCcC-CCCHHHHHHHHHhcCCcEEEeeccChh--------------hHHHHHHHHHh-CCC-eEeeeeecCC
Q 035377 8 CHLQDPRI-FHKAPQLIATTVNSGVLHFAVNGVSEE--------------DWNLVKDMSER-HPS-VIPCFGVHPW 66 (66)
Q Consensus 8 ~Hl~~~~~-~~~~~~~~~~~~~~gv~~~~~~~~~~~--------------~~~~~~~l~~~-~~~-i~~~~GiHP~ 66 (66)
.|+.-... ...+.+.+.++.+.||+.+++++.++. ....++++.++ ++. .+.+++.+|.
T Consensus 64 ~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe 139 (281)
T TIGR00677 64 MHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPE 139 (281)
T ss_pred EEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCC
Confidence 46653221 235778888999999999888776651 13334455544 444 6778887873
No 99
>PRK05985 cytosine deaminase; Provisional
Probab=90.35 E-value=1.8 Score=28.16 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=19.4
Q ss_pred HHHHHhcCCcEE-----EeeccChhhHHHHHHHHHhCC
Q 035377 23 IATTVNSGVLHF-----AVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 23 ~~~~~~~gv~~~-----~~~~~~~~~~~~~~~l~~~~~ 55 (66)
+.++.+.|+..+ +..+..++.++.++++.+.+.
T Consensus 104 ~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (391)
T PRK05985 104 ARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLR 141 (391)
T ss_pred HHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhh
Confidence 455667788764 222334556777777766654
No 100
>PRK02134 hypothetical protein; Provisional
Probab=90.22 E-value=1.4 Score=27.60 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=35.7
Q ss_pred CCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 11 QDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
|+--+...+..=+.++.+.|+-.-..+-++...++.+.++++++|. ..+|+|
T Consensus 10 DDfG~s~~vn~gI~~~~~~G~ltstslM~n~p~~~~a~~l~~~~~~--l~vGlH 61 (249)
T PRK02134 10 DDFGLSKGQNYGIIEAHRNGVVTSTTAMVNMPAIDHAVQLSREYPS--LGVGMH 61 (249)
T ss_pred CcCCCCHHHHHHHHHHHHCCCeeEEEeecCCchHHHHHHHHHhCCC--CCEEEE
Confidence 3433445567777888888985433333455667789999999987 478888
No 101
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=89.96 E-value=1.9 Score=29.13 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=34.7
Q ss_pred ceEeeccCCCCCc--CCCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHh
Q 035377 2 KLFDAHCHLQDPR--IFHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSER 53 (66)
Q Consensus 2 ~~iDsH~Hl~~~~--~~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~ 53 (66)
.+||.|+|+..+. .+++++.--+.|..-|+..++.+- .+++.++..++.+++
T Consensus 54 G~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~ 113 (430)
T COG0044 54 GLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKG 113 (430)
T ss_pred CeeEEEEecCCCCcchhhhHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhc
Confidence 3899999998643 345666666777778888766432 245566666666663
No 102
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=89.56 E-value=2.8 Score=26.40 Aligned_cols=48 Identities=6% Similarity=-0.010 Sum_probs=33.2
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChh------------hHHHHHHHHHh-CCCeEeeeeecC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEE------------DWNLVKDMSER-HPSVIPCFGVHP 65 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~------------~~~~~~~l~~~-~~~i~~~~GiHP 65 (66)
.+...+.++.+.||+.+++++.++. +...++++.++ ++.++.+++.+|
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~P 134 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYP 134 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCC
Confidence 5778888999999999886665543 23345555554 566777777766
No 103
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=89.42 E-value=1.6 Score=28.71 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=20.2
Q ss_pred ceEeeccCCCCCcCC----------CCHHHHHHHHHhcCCcEEE
Q 035377 2 KLFDAHCHLQDPRIF----------HKAPQLIATTVNSGVLHFA 35 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~----------~~~~~~~~~~~~~gv~~~~ 35 (66)
.+||+|+|.....+. ..+.+-=.++...||..++
T Consensus 49 GlID~H~h~~e~~~~prp~~~~~~~~~~~~~~~~~aa~GiTT~~ 92 (376)
T TIGR02318 49 GLIDLHTDNLERHMSPRPGVDWPIDAAIVEHDKQLAAAGITTVF 92 (376)
T ss_pred cEEEcccCccccCcCCCCCCCcchHHHHHHHHHHHhhCCcceEE
Confidence 389999998652111 1223333466678998654
No 104
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=89.41 E-value=1.2 Score=28.60 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=9.2
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||+|+|++.
T Consensus 50 GlId~H~H~~~ 60 (398)
T cd01293 50 AFVDPHIHLDK 60 (398)
T ss_pred CEeeeeeccCc
Confidence 38999999964
No 105
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=89.36 E-value=1 Score=29.76 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=21.5
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV 36 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~ 36 (66)
.+||+|+|++...+.+. ..+.+...||..++.
T Consensus 54 G~iD~H~H~~~~~~~~~---~~~~a~~~GvTt~~~ 85 (415)
T cd01297 54 GFIDVHTHYDGQVFWDP---DLRPSSRQGVTTVVL 85 (415)
T ss_pred CEeeeeecCCcccccCc---chhhHHhCcEEEEEe
Confidence 38999999976443322 344556778887765
No 106
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=89.35 E-value=0.87 Score=28.81 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
.++.++++.++|+++++++-..+++.+...+.++++.
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~g 140 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHG 140 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcC
Confidence 5667777777777777777777777777666666653
No 107
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=88.86 E-value=3.2 Score=24.31 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHH-HHHHhCCCeEee
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVK-DMSERHPSVIPC 60 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~-~l~~~~~~i~~~ 60 (66)
..++++.+.+.+ .++..+|.+++..+++. .+.++||++..+
T Consensus 35 ~~~ll~~~~~~~-~~v~llG~~~~~~~~~~~~l~~~yp~l~i~ 76 (171)
T cd06533 35 MPALLELAAQKG-LRVFLLGAKPEVLEKAAERLRARYPGLKIV 76 (171)
T ss_pred HHHHHHHHHHcC-CeEEEECCCHHHHHHHHHHHHHHCCCcEEE
Confidence 567888888877 45667899999888866 577789986543
No 108
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=88.77 E-value=2.4 Score=28.36 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=37.1
Q ss_pred ceEeeccCCCC-CcCC-----CCHHHHHHHHHhcCCcEEEee--ccChhhHHHHHHHHHhCC--CeEeeeeec
Q 035377 2 KLFDAHCHLQD-PRIF-----HKAPQLIATTVNSGVLHFAVN--GVSEEDWNLVKDMSERHP--SVIPCFGVH 64 (66)
Q Consensus 2 ~~iDsH~Hl~~-~~~~-----~~~~~~~~~~~~~gv~~~~~~--~~~~~~~~~~~~l~~~~~--~i~~~~GiH 64 (66)
.|||+|.|=.. -.+. +.++.+-+...+.|+..++-. +.+.+...++++-.+++- ..--.+|+|
T Consensus 53 GfID~hihG~gG~~~~D~~~~~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiH 125 (380)
T COG1820 53 GFIDLHIHGGGGADFMDAGSVETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIH 125 (380)
T ss_pred cEEEEeecCcCcccccCccCHHHHHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEE
Confidence 38999999532 1121 125556666788899877633 345666666665544432 233457887
No 109
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=88.45 E-value=1.5 Score=28.19 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=8.7
Q ss_pred eEeeccCCCC
Q 035377 3 LFDAHCHLQD 12 (66)
Q Consensus 3 ~iDsH~Hl~~ 12 (66)
+||+|+|++.
T Consensus 58 lid~H~Hl~~ 67 (411)
T cd01298 58 LVNTHTHLAM 67 (411)
T ss_pred ccccccchhh
Confidence 8999999963
No 110
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=88.29 E-value=4.1 Score=26.39 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=22.7
Q ss_pred ceEeeccCCCCC----cC-CCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDP----RI-FHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~----~~-~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+... .+ ..+.+.-+.++...|+..++..+
T Consensus 55 G~id~H~H~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~d~~ 96 (387)
T cd01308 55 GFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVGCL 96 (387)
T ss_pred CeeehhhCcccccCCCcccccCHHHHHHHHHhCCceEEecCc
Confidence 389999998541 11 12333344566778888777544
No 111
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=88.27 E-value=0.35 Score=33.79 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=21.3
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
.+||+|+|+..+. ..+.|...||..++..
T Consensus 136 G~ID~HVH~~~Pg-------~~~aALagGVTTvi~~ 164 (573)
T PRK13206 136 GAIDCHVHFICPQ-------IVDEALAAGITTLIGG 164 (573)
T ss_pred CEEeeeeccCCch-------HHHHHHcCCeEEEEcC
Confidence 3899999986432 2377788899988764
No 112
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=88.13 E-value=4.9 Score=26.23 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=18.4
Q ss_pred HHHHhcCCcEEEeecc-ChhhHHHHHHHHHhC
Q 035377 24 ATTVNSGVLHFAVNGV-SEEDWNLVKDMSERH 54 (66)
Q Consensus 24 ~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~ 54 (66)
.++...|+..+...+. .+.......+.+++.
T Consensus 97 ~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~ 128 (401)
T TIGR02967 97 DELLRNGTTTALVFATVHPESVDALFEAALKR 128 (401)
T ss_pred HHHHhCCCcEEEeccccCHHHHHHHHHHHHHC
Confidence 4667789988776543 333445555555554
No 113
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=87.68 E-value=3.4 Score=26.86 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=30.8
Q ss_pred EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc------ChhhHH-HHHHHHHhCC---CeEeeeeecC
Q 035377 4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV------SEEDWN-LVKDMSERHP---SVIPCFGVHP 65 (66)
Q Consensus 4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~------~~~~~~-~~~~l~~~~~---~i~~~~GiHP 65 (66)
-|.||||-. ++..+..--+-+.||..++.... +.+.++ +..++.++.+ ++.+..|++|
T Consensus 8 ~~~~~~~~~----~~~~~~~~~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~~ 75 (341)
T TIGR00856 8 DDWHLHLRD----GAMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYL 75 (341)
T ss_pred cceeeeccC----chHHHHHHHHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEEC
Confidence 389999954 22344444445556888776532 222232 2333444554 3445566665
No 114
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=87.53 E-value=0.6 Score=32.62 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=19.5
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
+||+|+|+..+. ..+.+...||..++..|+
T Consensus 130 lIDtHvH~~~P~-------~~~aAl~gGVTTmI~~Gt 159 (567)
T TIGR01792 130 GIDTHVHYISPQ-------QVQAALDNGITTLIGGGT 159 (567)
T ss_pred eEEeecCCCCcc-------HHHHHHhCceEEEecCCC
Confidence 899999985422 245566667776665443
No 115
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=87.53 E-value=4.5 Score=25.39 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
++.++++.++|+.+++++-...++..+.++.++++
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~ 139 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKH 139 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHC
Confidence 55556666666666555554445555555555544
No 116
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=87.30 E-value=4.8 Score=30.46 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=40.0
Q ss_pred CceEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377 1 MKLFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
|+++-.|||-...-+. ..+++++++|++.|...+.++=. +.-..-+..+.+++. +|.|-+|+
T Consensus 1 m~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~-gIkPIiG~ 65 (1107)
T PRK06920 1 MKFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKH-GIHPIIGL 65 (1107)
T ss_pred CCceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHc-CCCEeeee
Confidence 6788889997643333 47999999999999987654311 222233344456654 57776664
No 117
>PLN02303 urease
Probab=86.99 E-value=0.6 Score=34.02 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=9.1
Q ss_pred eEeeccCCCCC
Q 035377 3 LFDAHCHLQDP 13 (66)
Q Consensus 3 ~iDsH~Hl~~~ 13 (66)
+||+|+|+..+
T Consensus 400 ~ID~HVHf~~P 410 (837)
T PLN02303 400 GIDCHVHFICP 410 (837)
T ss_pred EEEeecCCCCC
Confidence 79999998643
No 118
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=86.91 E-value=4.5 Score=23.71 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHH-HHHhCCCeEee
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKD-MSERHPSVIPC 60 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~-l~~~~~~i~~~ 60 (66)
..++++.+.+.|. ++..+|.+++..+++.+ |.++||++..+
T Consensus 37 ~~~l~~~~~~~~~-~ifllG~~~~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 37 FPDLLRRAEQRGK-RIFLLGGSEEVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred HHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5677788888775 56678988888877654 67779986433
No 119
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=86.23 E-value=2.8 Score=26.62 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=36.2
Q ss_pred CCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 11 QDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
|+--+.+.+..=+-++.++|+-.-..+-++-..++.+.++++++|. ..+|+|
T Consensus 9 DDfG~s~~vn~gI~~~~~~G~v~sts~M~n~p~~~~a~~~~~~~~~--~~vGlH 60 (283)
T TIGR03473 9 DDFGLSLEVNEAVEKAHRDGILTAASLMVGAPAAEDAVERARRLPG--LGVGLH 60 (283)
T ss_pred ccCCCCHHHHHHHHHHHHcCceeeeeeccCChhHHHHHHHHHhCCC--CCEEEE
Confidence 4433445566777788888985443333466778889999999876 578888
No 120
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=86.05 E-value=2.9 Score=26.69 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
.-.++.++++++.||++++++=.-+++.....+.++++.
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~g 147 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHG 147 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcC
Confidence 346777888888888888887777777777777777764
No 121
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=86.02 E-value=3.8 Score=25.04 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
+..++.+.+.+.|++.+=+.-.++.-.+.+.++.++||++...+|
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAG 65 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAG 65 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 455677788889998665555566666667778888998766665
No 122
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=85.79 E-value=3.8 Score=25.84 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
.+-++++.+.|+.++++=+...++.+.+.+++++|+.
T Consensus 87 ~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~ 123 (241)
T COG0106 87 LEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGD 123 (241)
T ss_pred HHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCC
Confidence 4556777789999987655678899999999999984
No 123
>PRK07583 cytosine deaminase-like protein; Validated
Probab=85.39 E-value=3.3 Score=27.55 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=9.4
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||.|+|++.
T Consensus 76 g~id~H~Hld~ 86 (438)
T PRK07583 76 CFVDMHTHLDK 86 (438)
T ss_pred Ccccceecccc
Confidence 38999999975
No 124
>PRK09228 guanine deaminase; Provisional
Probab=84.93 E-value=8.3 Score=25.73 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=16.2
Q ss_pred HHHhcCCcEEEeecc-ChhhHHHHHHHHHhC
Q 035377 25 TTVNSGVLHFAVNGV-SEEDWNLVKDMSERH 54 (66)
Q Consensus 25 ~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~ 54 (66)
++-..|+..+...++ .+...+.+.+.+++.
T Consensus 123 e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~ 153 (433)
T PRK09228 123 ELLRNGTTTALVFGTVHPQSVDALFEAAEAR 153 (433)
T ss_pred HHHhCCceEEEeccccCHHHHHHHHHHHHHc
Confidence 345678777665432 244455555555543
No 125
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.47 E-value=4.7 Score=24.61 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=32.7
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
+..++.+.+.+.|++.+=++-+++.-.+.+.++.+++|.+...+|
T Consensus 17 ~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAG 61 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAG 61 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeE
Confidence 455677888889998665555566666667778888998766655
No 126
>PRK05451 dihydroorotase; Provisional
Probab=84.23 E-value=1.3 Score=28.71 Aligned_cols=31 Identities=23% Similarity=0.094 Sum_probs=17.3
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
-||.||||-... -.+++..-.+ +++..++..
T Consensus 10 ~~d~h~hl~~~~---~~~~~~~~~~-~~~t~~v~m 40 (345)
T PRK05451 10 PDDWHLHLRDGA---MLKAVVPYTA-RQFGRAIVM 40 (345)
T ss_pred cceEEEecCCch---HHHHHHHHHH-HhcCEEEEC
Confidence 589999997521 1122333333 457766654
No 127
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=84.22 E-value=3.9 Score=26.24 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=37.1
Q ss_pred cCCCCCcC-CCCHHHHHHHHHhcCCcEEEeeccChhh-----HH---HHHHHHHhCCCeEeeeeecC
Q 035377 8 CHLQDPRI-FHKAPQLIATTVNSGVLHFAVNGVSEED-----WN---LVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 8 ~Hl~~~~~-~~~~~~~~~~~~~~gv~~~~~~~~~~~~-----~~---~~~~l~~~~~~i~~~~GiHP 65 (66)
.|+.--.. ...+...+.++.+.||+.+++++.++.. +. .++++.++.+....+++.||
T Consensus 87 ~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yP 153 (296)
T PRK09432 87 PHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYP 153 (296)
T ss_pred eecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCC
Confidence 56653222 2256778889999999999988776421 12 45666666555445666666
No 128
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.84 E-value=4.7 Score=24.90 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=27.5
Q ss_pred HHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC-eEee
Q 035377 22 LIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPC 60 (66)
Q Consensus 22 ~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-i~~~ 60 (66)
-++++.+.|+.++++-+...++.+.+.+++++||. +..+
T Consensus 90 ~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvs 129 (234)
T PRK13587 90 QIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLS 129 (234)
T ss_pred HHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEE
Confidence 35566678999986544456777888889999864 5444
No 129
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=83.74 E-value=7.9 Score=25.74 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=24.5
Q ss_pred ceEeeccCCCCC----cC-CCCHHHHHHHHHhcCCcEEEeec
Q 035377 2 KLFDAHCHLQDP----RI-FHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 2 ~~iDsH~Hl~~~----~~-~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
.+||+|+|+... .+ ....+.-+.++.+.|+..++-++
T Consensus 57 GlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~d~~ 98 (389)
T TIGR01975 57 GFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVVGLL 98 (389)
T ss_pred CEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEecCc
Confidence 389999998631 11 12344457788889998887543
No 130
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=83.33 E-value=4.8 Score=26.61 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeee
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
.+..++..++.|++.++++|-+ .++.-+..|++..+ ++++|+
T Consensus 83 ~~~~~~~l~~~gId~LvvIGGD-gS~~gA~~Lae~~~--i~vVGv 124 (347)
T COG0205 83 RKVAAENLKKLGIDALVVIGGD-GSYTGAALLAEEGG--IPVVGV 124 (347)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHhcC--CcEEec
Confidence 5677888999999999999965 66777777887765 566665
No 131
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=83.17 E-value=2.5 Score=29.01 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=32.3
Q ss_pred EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccC-------------hhhHHHHHHHHHhCCC
Q 035377 4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVS-------------EEDWNLVKDMSERHPS 56 (66)
Q Consensus 4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~-------------~~~~~~~~~l~~~~~~ 56 (66)
||+|+|+=. .+.++.|...||..++-=|+. +-...+.++-++.+|-
T Consensus 132 iDtHiHfI~-------Pqqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~ 190 (568)
T COG0804 132 IDTHIHFIC-------PQQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPM 190 (568)
T ss_pred ccceeEEec-------HHHHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCce
Confidence 799999743 456788889999888744433 2335577777777874
No 132
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=83.02 E-value=5.9 Score=24.10 Aligned_cols=46 Identities=9% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
++..++.+.+.+.|++.+=++-.++.-.+.+.++.+++|++...+|
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAG 65 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAG 65 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEE
Confidence 4677888889999998553333344444444458888999776666
No 133
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=82.65 E-value=1.8 Score=28.08 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=23.5
Q ss_pred ceEeeccCCCCCcCC-------------------------CCHHHHHHHHHhcCCcEEE
Q 035377 2 KLFDAHCHLQDPRIF-------------------------HKAPQLIATTVNSGVLHFA 35 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~-------------------------~~~~~~~~~~~~~gv~~~~ 35 (66)
.+||.|+|++..... ...+..+.++++.||..+.
T Consensus 30 g~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~~a~~~GvT~~~ 88 (359)
T cd01309 30 GLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFKRARAGGVTTVQ 88 (359)
T ss_pred cEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHHHHHhcCceEEE
Confidence 489999999742110 1245678899999998753
No 134
>PRK09453 phosphodiesterase; Provisional
Probab=82.37 E-value=6.5 Score=22.89 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=33.5
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChh------------hHHHHHHHHHhCC-CeEeeeeec
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEE------------DWNLVKDMSERHP-SVIPCFGVH 64 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~------------~~~~~~~l~~~~~-~i~~~~GiH 64 (66)
+-|+|-.+ ..++++++.+++.+++.++..| |.- +.++++++.++.. .++...|=|
T Consensus 6 iSD~Hg~~------~~~~~~l~~~~~~~~d~ii~lG-Di~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNh 73 (182)
T PRK09453 6 ASDTHGSL------PATEKALELFAQSGADWLVHLG-DVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNC 73 (182)
T ss_pred EEeccCCH------HHHHHHHHHHHhcCCCEEEEcc-cccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCC
Confidence 46888321 2357778888788899888877 332 1345566555543 466666654
No 135
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=82.31 E-value=7.9 Score=22.91 Aligned_cols=45 Identities=11% Similarity=0.232 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
+..++++.+.+.|++.+-+.-.+....+.+..+.+.+|.+...+|
T Consensus 17 ~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag 61 (190)
T cd00452 17 DALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAG 61 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEE
Confidence 455777888889998765544455555566777788887665554
No 136
>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This entry contains ChbG (YdjC), which is is an uncharacterised protein encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source [, ]. The entry also contains HpnK, which is a protein associated with hopanoid biosynthesis.; PDB: 2E67_C 2I5I_B.
Probab=82.27 E-value=3.8 Score=25.47 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
..+..=+.++.+.|+-.-..+-++-..++.+.++++++|. ..+|+|
T Consensus 14 ~~vn~gI~~~~~~G~vtstslM~n~p~~~~a~~~~k~~~~--~~vGlH 59 (261)
T PF04794_consen 14 PGVNRGIIEAFENGIVTSTSLMVNMPAFEEAAALAKNNPG--LDVGLH 59 (261)
T ss_dssp HHHHHHHHHHHHCCT-SEEEEETTSTTHHHHHHHHHH-TT--TEEEEE
T ss_pred HHHHHHHHHHHHcCCceEeeeccCChhHHHHHHHHHhCCC--CCEEEE
Confidence 3455667778888885433334466778889999999886 457877
No 137
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=82.25 E-value=3.4 Score=22.08 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
.|+.+++..|-..|+..++++| +.+-.+.+++++++..
T Consensus 48 gdR~di~~~a~~~~i~~iIltg-~~~~~~~v~~la~~~~ 85 (105)
T PF07085_consen 48 GDREDIQLAAIEAGIACIILTG-GLEPSEEVLELAKELG 85 (105)
T ss_dssp TT-HHHHHHHCCTTECEEEEET-T----HHHHHHHHHHT
T ss_pred CCcHHHHHHHHHhCCCEEEEeC-CCCCCHHHHHHHHHCC
Confidence 5788999999999988888776 5566677788888754
No 138
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=82.11 E-value=12 Score=28.26 Aligned_cols=61 Identities=5% Similarity=0.007 Sum_probs=38.5
Q ss_pred ceEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeeee
Q 035377 2 KLFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
+++-.|+|-...-+. ..+++++++|++.|...+.++=. +.-..-+-.+.++++ +|.|-+|+
T Consensus 1 mfvhLh~hS~YSlldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~-gIkPIiG~ 64 (1034)
T PRK07279 1 MFAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKN-GLQPILGL 64 (1034)
T ss_pred CeeeeecCCCCccccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHc-CCcEEEEE
Confidence 367778886543222 47999999999999987754311 223333444556664 57777764
No 139
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=81.89 E-value=4.8 Score=22.12 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=25.7
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
...++++++.+.|++.+++... +..+++.+++++++
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~g 102 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG--AESEELIEAAREAG 102 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcC
Confidence 3678899999999998776654 67778888888875
No 140
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=81.73 E-value=3.9 Score=24.83 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
.+++.++++..++|...+..---+.++..+.++..++. ++.+++.+.|
T Consensus 67 ~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~-g~k~GialnP 114 (201)
T PF00834_consen 67 ENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEA-GIKAGIALNP 114 (201)
T ss_dssp SSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHT-TSEEEEEE-T
T ss_pred ccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHh-CCCEEEEEEC
Confidence 34566777777777775543333334455666666664 5667777766
No 141
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=81.60 E-value=13 Score=28.00 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=38.1
Q ss_pred ceEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeeee
Q 035377 2 KLFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
+++-.|||-...-+. ..+++++++|.+.|...+.++= .++--.-+-.+.++++ +|.|-+|+
T Consensus 1 mfvhLh~hS~YSlLdg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~-gIkPIiG~ 64 (971)
T PRK05898 1 MFINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAH-NLIPIIGL 64 (971)
T ss_pred CeeeeecCCccccccccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHc-CCCEEEEE
Confidence 367788886543333 4799999999999998765431 1222233344455654 57777764
No 142
>PRK06846 putative deaminase; Validated
Probab=81.51 E-value=5 Score=26.41 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=9.3
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||+|+|++.
T Consensus 68 g~iD~H~H~~~ 78 (410)
T PRK06846 68 AFREMHIHLDK 78 (410)
T ss_pred CEEeeeecccc
Confidence 38999999974
No 143
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=81.37 E-value=8.2 Score=24.33 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=27.6
Q ss_pred CHHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHHHHHhC-CCeEeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVS-------EEDWNLVKDMSERH-PSVIPCFG 62 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~l~~~~-~~i~~~~G 62 (66)
...++++...+.||+++++.|++ .++-.++.+.+.+. ..+...+|
T Consensus 21 ~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg 73 (279)
T cd00953 21 KFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVG 73 (279)
T ss_pred HHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeC
Confidence 35677788888899998887763 34444555543332 23555554
No 144
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=81.29 E-value=10 Score=25.16 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=8.9
Q ss_pred eEeeccCCCC
Q 035377 3 LFDAHCHLQD 12 (66)
Q Consensus 3 ~iDsH~Hl~~ 12 (66)
+||+|+|+..
T Consensus 58 lId~H~H~~~ 67 (445)
T PRK07228 58 LIQGHIHLCQ 67 (445)
T ss_pred EEecccCCcc
Confidence 8999999974
No 145
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=81.28 E-value=2.3 Score=26.84 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=23.1
Q ss_pred CCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377 30 GVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 30 gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
|..++++-+|.+++..++.+....++-+.|.+|
T Consensus 187 g~~GvV~gAT~p~e~~~iR~~~~~~~il~PGig 219 (261)
T TIGR02127 187 SSVGAVVGATSPGDLLRLRIEMPTAPFLVPGFG 219 (261)
T ss_pred CceEEEECCCCHHHHHHHHHhCCCCeEEeCCcC
Confidence 577888878888888888776644444555554
No 146
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=81.08 E-value=11 Score=28.68 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=38.4
Q ss_pred CceEeeccCCCCCcC--CCCHHHHHHHHHhcCCcEEEeeccChhhHH---HHHHHHHhCCCeEeeeee
Q 035377 1 MKLFDAHCHLQDPRI--FHKAPQLIATTVNSGVLHFAVNGVSEEDWN---LVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~--~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~---~~~~l~~~~~~i~~~~Gi 63 (66)
|+++-.|||-+..-+ ...+++++++|++.|...+.+ |+..+.- +..+.+++. ++.+-+|+
T Consensus 2 ~~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~Alai--TD~~nl~Gav~Fy~~ak~~-gikpIiG~ 66 (1139)
T COG0587 2 MSFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALAL--TDHNNLYGAVEFYKAAKKA-GIKPIIGC 66 (1139)
T ss_pred CceeecccccccchhccccCHHHHHHHHHHcCCCeEEE--ecCCcceeHHHHHHHHHHc-CCeEEeee
Confidence 568888999764322 247999999999999987644 2444333 333334443 57776664
No 147
>PRK09061 D-glutamate deacylase; Validated
Probab=81.05 E-value=3.6 Score=28.18 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=18.7
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEee
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
.+||+|+|...+. ..+.+...||..++..
T Consensus 72 G~ID~H~H~~~~~-------~~~~~~~~GvTtvv~~ 100 (509)
T PRK09061 72 GFIDLHAHGQSVA-------AYRMQAFDGVTTALEL 100 (509)
T ss_pred CeEeeeeCCCCCc-------cchhhccCCceeEEee
Confidence 3899999986422 1233345688877665
No 148
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=80.97 E-value=4.7 Score=25.57 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEe
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIP 59 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 59 (66)
.+.++.++++.+.|.+-++..|.... +.+.+++++||++.+
T Consensus 48 ~~~~~~~~~~~~~g~dlIi~~g~~~~--~~~~~vA~~yPd~~F 88 (306)
T PF02608_consen 48 ADYEEAIRQLADQGYDLIIGHGFEYS--DALQEVAKEYPDTKF 88 (306)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESGGGH--HHHHHHHTC-TTSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEccHHHH--HHHHHHHHHCCCCEE
Confidence 35677888888889887877665444 457789999998544
No 149
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.80 E-value=1.1 Score=30.02 Aligned_cols=11 Identities=55% Similarity=0.637 Sum_probs=9.4
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||+||||..
T Consensus 65 GLID~HtHl~~ 75 (406)
T COG1228 65 GLIDAHTHLGF 75 (406)
T ss_pred ceeeccccccc
Confidence 38999999975
No 150
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=80.25 E-value=7.1 Score=22.61 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEe
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIP 59 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 59 (66)
++..+..+++++.||. ++.+|....+.+++..++..-.++|.
T Consensus 120 d~~~~~a~~lr~~gv~-i~~vG~~~~~~~eL~~ias~p~~vf~ 161 (165)
T cd01481 120 DDVERPAVALKRAGIV-PFAIGARNADLAELQQIAFDPSFVFQ 161 (165)
T ss_pred chHHHHHHHHHHCCcE-EEEEeCCcCCHHHHHHHhCCCccEEE
Confidence 3566667788888886 55677765677777777765334553
No 151
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=80.13 E-value=3.1 Score=26.18 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccC---hhhHHHHHHH---HHhCCCeEeeeeecC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVS---EEDWNLVKDM---SERHPSVIPCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~---~~~~~~~~~l---~~~~~~i~~~~GiHP 65 (66)
.|..+-+++.-+.||.+++..|-. ++....+.+| ++.-..|.++.|+-|
T Consensus 128 ~d~~~ale~li~~Gv~RILTsGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~ 182 (241)
T COG3142 128 PDPLEALEQLIELGVERILTSGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRA 182 (241)
T ss_pred CCHHHHHHHHHHCCCcEEecCCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCH
Confidence 468888999999999999987753 3333344444 443334777777654
No 152
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=80.07 E-value=6.1 Score=24.77 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
.+..++.++++|..+++++-..+|+.....+-++++
T Consensus 112 ~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~ 147 (268)
T KOG4175|consen 112 VENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKH 147 (268)
T ss_pred HHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhc
Confidence 466777777777777777777777777777766665
No 153
>PRK09875 putative hydrolase; Provisional
Probab=80.04 E-value=11 Score=24.28 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=40.2
Q ss_pred ceEeeccCCCC--CcCC-------CCHHHHH---HHHHhcCCcEEEeecc--ChhhHHHHHHHHHhCC-CeEeeeeec
Q 035377 2 KLFDAHCHLQD--PRIF-------HKAPQLI---ATTVNSGVLHFAVNGV--SEEDWNLVKDMSERHP-SVIPCFGVH 64 (66)
Q Consensus 2 ~~iDsH~Hl~~--~~~~-------~~~~~~~---~~~~~~gv~~~~~~~~--~~~~~~~~~~l~~~~~-~i~~~~GiH 64 (66)
.+..+|=|+.. +.+. ++.+..+ .+.++.|+..++.++. --++-+.+.+++++-. +|..+.|++
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y 84 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYY 84 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCC
Confidence 35677888742 2111 2344444 4567799999887543 1256677778888765 588898976
No 154
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=79.81 E-value=8.9 Score=23.31 Aligned_cols=46 Identities=9% Similarity=0.145 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC-eEeeee
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIPCFG 62 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-i~~~~G 62 (66)
++..++.+.+.+.|++.+=+.-.++...+.+.++.++|+. +...+|
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaG 68 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAG 68 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEE
Confidence 3566778888999998654444455566677788888984 555555
No 155
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=79.58 E-value=7.7 Score=24.43 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCcEEEe---eccChhhHHHHHHHHHhCCCeEeeeee
Q 035377 19 APQLIATTVNSGVLHFAV---NGVSEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~---~~~~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
-.++..+|.++|.- +++ ++.++++.+++.+++++. ++..++|.
T Consensus 80 H~e~~~~AL~aGkh-Vl~EKPla~t~~ea~~l~~~a~~~-~~~l~v~~ 125 (342)
T COG0673 80 HAELALAALEAGKH-VLCEKPLALTLEEAEELVELARKA-GVKLMVGF 125 (342)
T ss_pred hHHHHHHHHhcCCE-EEEcCCCCCCHHHHHHHHHHHHHc-CCceeeeh
Confidence 34556667777752 332 456778888888888876 66666664
No 156
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=78.99 E-value=3.5 Score=24.62 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred eEeeccC--CCCCc----CCCCHHHHHHHHHhcCCcEEEe
Q 035377 3 LFDAHCH--LQDPR----IFHKAPQLIATTVNSGVLHFAV 36 (66)
Q Consensus 3 ~iDsH~H--l~~~~----~~~~~~~~~~~~~~~gv~~~~~ 36 (66)
+||+|+| +.... ...........+...|+..++.
T Consensus 11 lID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~ 50 (304)
T PF13147_consen 11 LIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVD 50 (304)
T ss_dssp EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEE
T ss_pred eeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEec
Confidence 8999999 43211 1123345556667788877664
No 157
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=78.83 E-value=12 Score=23.09 Aligned_cols=47 Identities=6% Similarity=0.173 Sum_probs=19.4
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
+++..++...++|.+.+..=.-......+.++..++. ++.+++.+.|
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~-g~k~GlalnP 119 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSH-GCQAGLVLNP 119 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHC-CCceeEEeCC
Confidence 3455555555555543321111112233444444443 3444444444
No 158
>PRK05406 LamB/YcsF family protein; Provisional
Probab=78.69 E-value=9.3 Score=24.20 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=39.6
Q ss_pred CceEeeccCCCC--CcC-CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 1 MKLFDAHCHLQD--PRI-FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 1 m~~iDsH~Hl~~--~~~-~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
|+.||.=|=+.. ..+ .++-++++.-...++|.--.- +.++....+.++|++++. -.+|-||.
T Consensus 1 ~~~idLN~DlGE~fG~w~~g~D~~lmp~IssANIACG~H-AGDp~~M~~tv~lA~~~g---V~IGAHPg 65 (246)
T PRK05406 1 MMKIDLNCDLGESFGAWKMGDDEALLPLVTSANIACGFH-AGDPAVMRRTVRLAKENG---VAIGAHPG 65 (246)
T ss_pred CceeEeecccCCCCCCCCCCCHHHHHHHhhhHHHhcccc-CCCHHHHHHHHHHHHHcC---CeEccCCC
Confidence 445777777653 111 134466777666666632212 238899999999999974 46788883
No 159
>PRK13660 hypothetical protein; Provisional
Probab=78.27 E-value=10 Score=22.89 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCcEEEeec---cChhhHHHHHHHHHhCCCeEeee
Q 035377 19 APQLIATTVNSGVLHFAVNG---VSEEDWNLVKDMSERHPSVIPCF 61 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~---~~~~~~~~~~~l~~~~~~i~~~~ 61 (66)
+.+.+.++-+.|++.+++-| ++.--.+.+++|.++||.+..++
T Consensus 31 L~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~ 76 (182)
T PRK13660 31 IKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAV 76 (182)
T ss_pred HHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 34455566678999887543 33444578999999999865544
No 160
>COG3394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.89 E-value=4 Score=25.96 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
..--|-++.+.||-.--.+-++...++.+.++++++|. ..+|.|
T Consensus 18 ~nyGIiea~~~GvvtsTt~M~n~pa~~hAv~l~k~~p~--l~IGlH 61 (257)
T COG3394 18 VNYGIIEAHRTGVVTSTTLMVNMPAIDHAVALSKKLPA--LKIGLH 61 (257)
T ss_pred cchhHHHHHhCCceeceeeecCCcccHHHHHHHhhCCC--cceeee
Confidence 34445566677874332233467889999999999998 677777
No 161
>PRK09248 putative hydrolase; Validated
Probab=77.48 E-value=2.4 Score=26.07 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCcEEEeeccCh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSE 41 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~ 41 (66)
..+.++.+++.|++..-+..+++
T Consensus 203 ~~~~~~~~~~~g~~~~~~~~~~~ 225 (246)
T PRK09248 203 FEEALKILDEVGFPEERILNVSP 225 (246)
T ss_pred HHHHHHHHHHcCCCHHHeeeCCH
Confidence 44455555555554433333333
No 162
>PRK09358 adenosine deaminase; Provisional
Probab=77.35 E-value=3.8 Score=26.24 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=18.3
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCc
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVL 32 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~ 32 (66)
=+|.||||+.. -..+.+++-++++|+.
T Consensus 12 K~eLH~Hl~Gs---~~~~~l~~l~~~~~~~ 38 (340)
T PRK09358 12 KAELHLHLDGS---LRPETILELARRNGIA 38 (340)
T ss_pred ceeEEecccCC---CCHHHHHHHHHHcCCC
Confidence 37999999852 2456666666666654
No 163
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=77.23 E-value=9.9 Score=23.52 Aligned_cols=43 Identities=9% Similarity=-0.032 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeee
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCF 61 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~ 61 (66)
.+.++.++++.+.|...++..| .+-.+.+.+.+++||.+.+.+
T Consensus 44 ~~~~~~i~~~~~~g~dlIi~~g--~~~~~~~~~vA~~~p~~~F~~ 86 (258)
T cd06353 44 ADAERVLRELAAQGYDLIFGTS--FGFMDAALKVAKEYPDVKFEH 86 (258)
T ss_pred HhHHHHHHHHHHcCCCEEEECc--hhhhHHHHHHHHHCCCCEEEE
Confidence 3566777777777877666544 333344677888999855443
No 164
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=76.88 E-value=7.9 Score=24.17 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=23.0
Q ss_pred cCCCCCcC-CCCHHHHHHHHHhcCCcEEEeeccC
Q 035377 8 CHLQDPRI-FHKAPQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 8 ~Hl~~~~~-~~~~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
.|+..... ...+.+.+.++.+.||+.+++++.+
T Consensus 63 ~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD 96 (274)
T cd00537 63 PHLTCRDRNRIELQSILLGAHALGIRNILALRGD 96 (274)
T ss_pred eecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCC
Confidence 45553222 2357888899999999999888544
No 165
>PRK14085 imidazolonepropionase; Provisional
Probab=76.73 E-value=1.3 Score=28.87 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=9.2
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.|||+|+|+..
T Consensus 64 GlId~H~Hl~~ 74 (382)
T PRK14085 64 GFVDSHSHLVF 74 (382)
T ss_pred CeEecCcCccc
Confidence 38999999964
No 166
>PRK06380 metal-dependent hydrolase; Provisional
Probab=76.12 E-value=3.3 Score=27.20 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=9.3
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||+|+|+..
T Consensus 55 G~Vd~H~Hl~~ 65 (418)
T PRK06380 55 GLINTHAHVGM 65 (418)
T ss_pred CEEeeccCCCc
Confidence 38999999974
No 167
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=76.08 E-value=10 Score=24.17 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCcEEEeeccChhh----HHHHHHHHHhC-CC-eEee
Q 035377 21 QLIATTVNSGVLHFAVNGVSEED----WNLVKDMSERH-PS-VIPC 60 (66)
Q Consensus 21 ~~~~~~~~~gv~~~~~~~~~~~~----~~~~~~l~~~~-~~-i~~~ 60 (66)
+-++++.+.|++++++-+...++ .+.+.+++++| |. |..+
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~Ivvs 140 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLD 140 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEE
Confidence 66778888999999765545566 77788888888 43 4443
No 168
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=75.94 E-value=12 Score=24.58 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=22.5
Q ss_pred eEeeccCCCC----Cc------CCCCHHHHHHHHHhcCCcEEEee
Q 035377 3 LFDAHCHLQD----PR------IFHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 3 ~iDsH~Hl~~----~~------~~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
+||+|+|... +. ..+++..--.++...|+..++..
T Consensus 54 ~ID~H~h~~~~~~~p~~~~~~~~~~~~~~~~~~a~~gG~Tt~~d~ 98 (383)
T PRK15446 54 LVDLHTDNLEKHLAPRPGVDWPADAALAAHDAQLAAAGITTVFDA 98 (383)
T ss_pred eEEcccCCcccccCCCCCCccchHHHHHHHHHHHHhCCccEeeee
Confidence 8999995431 21 11345555577788899887763
No 169
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=75.89 E-value=5.6 Score=21.25 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
.+++.+.+++.|+-.++.-|...+..+++.+++++
T Consensus 17 ~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~ 51 (116)
T PF14226_consen 17 AEQLRDACEEWGFFYLVNHGIPQELIDRVFAAARE 51 (116)
T ss_dssp HHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEecccccchhhHHHHHHHHH
Confidence 45677777888987777778888878888777665
No 170
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.89 E-value=16 Score=22.57 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
++..++++.+++.|++.++.+... .+.+++..+++.-+.
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~-T~~e~l~~~~~~~~~ 154 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPK-FPDLLIHRLSKLSPL 154 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHHhCCC
Confidence 467789999999999987665431 223344444554454
No 171
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=75.75 E-value=4.1 Score=25.92 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=16.4
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCc
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVL 32 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~ 32 (66)
=+|.||||+.. -..+.+++-+++.|+.
T Consensus 3 K~eLH~Hl~Gs---i~~~~l~~l~~~~~~~ 29 (324)
T TIGR01430 3 KAELHLHLEGS---IRPETLLELAQKNGIP 29 (324)
T ss_pred ceeeEecccCC---CCHHHHHHHHHHcCCC
Confidence 47999999742 2345555555555543
No 172
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=75.72 E-value=12 Score=23.37 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHhcCCcEEE
Q 035377 17 HKAPQLIATTVNSGVLHFA 35 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~ 35 (66)
.|.++++.+.-++|++.+|
T Consensus 122 ~d~~ell~e~~~~Gf~~~I 140 (223)
T COG2102 122 RDPEELLEEMVEAGFEAII 140 (223)
T ss_pred CCHHHHHHHHHHcCCeEEE
Confidence 4889999999999998754
No 173
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=75.58 E-value=0.79 Score=29.60 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=7.3
Q ss_pred eEeeccCCCC
Q 035377 3 LFDAHCHLQD 12 (66)
Q Consensus 3 ~iDsH~Hl~~ 12 (66)
|||+|+|++.
T Consensus 6 fiD~H~H~~~ 15 (404)
T PF07969_consen 6 FIDSHTHLDS 15 (404)
T ss_dssp EEEEEEEHTT
T ss_pred hhHHhhChHH
Confidence 7888888653
No 174
>PRK08005 epimerase; Validated
Probab=75.39 E-value=16 Score=22.41 Aligned_cols=14 Identities=0% Similarity=-0.234 Sum_probs=6.9
Q ss_pred HHHHHHHHHhcCCc
Q 035377 19 APQLIATTVNSGVL 32 (66)
Q Consensus 19 ~~~~~~~~~~~gv~ 32 (66)
++..++...++|..
T Consensus 70 P~~~i~~~~~~gad 83 (210)
T PRK08005 70 PQRWLPWLAAIRPG 83 (210)
T ss_pred HHHHHHHHHHhCCC
Confidence 44455555555544
No 175
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=75.33 E-value=17 Score=22.67 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=6.7
Q ss_pred HHHHHHHHHhcCCc
Q 035377 19 APQLIATTVNSGVL 32 (66)
Q Consensus 19 ~~~~~~~~~~~gv~ 32 (66)
++.+++...++|.+
T Consensus 73 p~~~i~~fa~agad 86 (220)
T COG0036 73 PDRYIEAFAKAGAD 86 (220)
T ss_pred HHHHHHHHHHhCCC
Confidence 44455555555543
No 176
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=74.22 E-value=1.6 Score=28.02 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=9.3
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.|||+|+|++.
T Consensus 38 g~vn~H~Hl~~ 48 (371)
T cd01296 38 GLVDCHTHLVF 48 (371)
T ss_pred ceeecCCCCcC
Confidence 38999999965
No 177
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=74.07 E-value=18 Score=22.25 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=7.7
Q ss_pred HHHHHHHHHhcCCcE
Q 035377 19 APQLIATTVNSGVLH 33 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~ 33 (66)
+.++++..++.|++.
T Consensus 95 ~~~~l~~ik~~g~k~ 109 (220)
T PRK08883 95 VDRTLQLIKEHGCQA 109 (220)
T ss_pred HHHHHHHHHHcCCcE
Confidence 445555555555543
No 178
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=74.01 E-value=6.8 Score=27.11 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=31.6
Q ss_pred eEeeccCCCCCcC----CCCHHHHHHHHHhcCCcEEEeec------cChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 3 LFDAHCHLQDPRI----FHKAPQLIATTVNSGVLHFAVNG------VSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 3 ~iDsH~Hl~~~~~----~~~~~~~~~~~~~~gv~~~~~~~------~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
-||+|+|+..+-. .+|+..=-+.|..-|...++..- +..+.|++-.+.++ |.+..=+|+|
T Consensus 68 gID~Hthlq~p~~G~ts~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad--~k~cCDyglh 137 (522)
T KOG2584|consen 68 GIDPHTHLQMPFMGMTSVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWAD--PKVCCDYGLH 137 (522)
T ss_pred ccCccceeccccCCccchhhhhcccHHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcC--Cceeeeeeee
Confidence 5899999986422 13444444566666665554321 12344444444443 3455555554
No 179
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=73.24 E-value=15 Score=22.10 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC--CeEee
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP--SVIPC 60 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~--~i~~~ 60 (66)
.+-++++.+.|+.++++.+..+++.+.+.++++++. .+.++
T Consensus 84 ~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~s 126 (230)
T TIGR00007 84 LEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVS 126 (230)
T ss_pred HHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEE
Confidence 344577778899988655455677777888888874 36655
No 180
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=73.06 E-value=12 Score=19.85 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCcEEEe--eccChhhHHHHHHHHHhCCCeEeeee
Q 035377 19 APQLIATTVNSGVLHFAV--NGVSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~--~~~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
..+++.++.++|+.-++- ++.++++.+++.++++++.. ...+|
T Consensus 75 h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~-~~~Vg 119 (120)
T PF01408_consen 75 HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGV-KVMVG 119 (120)
T ss_dssp HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTS-CEEEE
T ss_pred hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCC-EEEEe
Confidence 556777888888732222 46788999999999998643 35555
No 181
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.84 E-value=18 Score=22.18 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=28.5
Q ss_pred CHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
+..++.+.+.+.|++.+ -++. +++-.+.+.++.++||++...+|
T Consensus 28 ~a~~i~~al~~~Gi~~i-Eitl~~~~~~~~I~~l~~~~p~~~IGAG 72 (212)
T PRK05718 28 DAVPLAKALVAGGLPVL-EVTLRTPAALEAIRLIAKEVPEALIGAG 72 (212)
T ss_pred HHHHHHHHHHHcCCCEE-EEecCCccHHHHHHHHHHHCCCCEEEEe
Confidence 34556677778888854 4444 44445556677788998666655
No 182
>PRK12569 hypothetical protein; Provisional
Probab=71.92 E-value=17 Score=23.06 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=37.6
Q ss_pred eEeeccCCCCCcCC----CC--HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 3 LFDAHCHLQDPRIF----HK--APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~----~~--~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
-||.=|=+.. .|. ++ -++++.-...++|.--.- +.++....+..+|++++. -.+|-||.
T Consensus 4 ~idLN~DlGE-sfG~~~~g~~~D~~lmp~ItsaNIACG~H-AGDp~~M~~tv~lA~~~~---V~IGAHPs 68 (245)
T PRK12569 4 SIDLNSDMGE-GFGPWRIGDGVDEALMPLISSANIATGFH-AGDPNIMRRTVELAKAHG---VGIGAHPG 68 (245)
T ss_pred eEEeccccCC-CCCCcCCCCccHHHHHHHhhhHHHhcccc-CCCHHHHHHHHHHHHHcC---CEeccCCC
Confidence 4677766643 221 34 456666666666532211 238899999999999984 46788883
No 183
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=71.81 E-value=6.1 Score=23.60 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCcEEEeec---cChhhHHHHHHHHHhCCCeEeee
Q 035377 19 APQLIATTVNSGVLHFAVNG---VSEEDWNLVKDMSERHPSVIPCF 61 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~---~~~~~~~~~~~l~~~~~~i~~~~ 61 (66)
+.+.+.++-+.|++.+++-| ++.--.+.+++|.++||.+..++
T Consensus 31 L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~ 76 (177)
T PF06908_consen 31 LKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLAL 76 (177)
T ss_dssp HHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEE
T ss_pred HHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEE
Confidence 45556677788999876533 34445667888888999866544
No 184
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=71.72 E-value=14 Score=23.91 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=29.0
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
+.+++++..++.+|+.++++|-+ .++..+..|++.+
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~ 114 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGD-GSYTGAQKLYEEG 114 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHhh
Confidence 46678889999999999999965 6777777787754
No 185
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=71.53 E-value=11 Score=21.36 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
++..+..+++++.||. +.++|....+.+.+.+++.+
T Consensus 117 ~~~~~~a~~lk~~gi~-i~~ig~g~~~~~~L~~ia~~ 152 (164)
T cd01482 117 DDVELPARVLRNLGVN-VFAVGVKDADESELKMIASK 152 (164)
T ss_pred chHHHHHHHHHHCCCE-EEEEecCcCCHHHHHHHhCC
Confidence 3566777888888885 55667765666667777775
No 186
>PRK14072 6-phosphofructokinase; Provisional
Probab=71.39 E-value=15 Score=24.78 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=30.2
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH---hCCCeEeeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE---RHPSVIPCFGV 63 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~---~~~~i~~~~Gi 63 (66)
..+++++..++.||+.++++|-+ .++.-+.+|++ +...=.+.+|+
T Consensus 91 ~~~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 91 EYERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEe
Confidence 46788889999999999999964 45555555544 33322355565
No 187
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=71.14 E-value=9.7 Score=23.94 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=7.6
Q ss_pred HHHHHHHHHhcCCcEE
Q 035377 19 APQLIATTVNSGVLHF 34 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~ 34 (66)
++++++-+.++||+++
T Consensus 191 f~~I~~i~ldaGv~kv 206 (236)
T TIGR03581 191 FEEIVQIALDAGVEKV 206 (236)
T ss_pred HHHHHHHHHHcCCCee
Confidence 4444444444454443
No 188
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=71.12 E-value=4.7 Score=22.31 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCcEEE-eeccChhhHHHHHHHHHhCCCe
Q 035377 19 APQLIATTVNSGVLHFA-VNGVSEEDWNLVKDMSERHPSV 57 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~-~~~~~~~~~~~~~~l~~~~~~i 57 (66)
..+.++.+.+.|+.-++ ..|.+.++.+++.+++++-|-+
T Consensus 80 ~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl 119 (124)
T PF01113_consen 80 VYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVL 119 (124)
T ss_dssp HHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEE
T ss_pred hHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEE
Confidence 44566677777765433 2223456666777777764433
No 189
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=71.08 E-value=20 Score=22.35 Aligned_cols=36 Identities=6% Similarity=-0.051 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377 21 QLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 21 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
+-++++.+.|+.++++-+...++-+.+.++++.|+.
T Consensus 87 e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~ 122 (243)
T TIGR01919 87 SSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGD 122 (243)
T ss_pred HHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccc
Confidence 334556667888886544456777777788888864
No 190
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=71.04 E-value=10 Score=21.69 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=20.3
Q ss_pred CHHHHHHHHHhcCCcE-EEeeccC----hhhHHHHHHHHHhC
Q 035377 18 KAPQLIATTVNSGVLH-FAVNGVS----EEDWNLVKDMSERH 54 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~-~~~~~~~----~~~~~~~~~l~~~~ 54 (66)
...+++++.++.|+.. .+.+|-. .+++....+..++.
T Consensus 68 ~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~ 109 (134)
T TIGR01501 68 DCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEM 109 (134)
T ss_pred HHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHc
Confidence 3667777888887743 3445543 35555433333443
No 191
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=70.83 E-value=21 Score=22.45 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
..+.++++++.|++.+|+++-.- .++-.+++++.|++=..+|=|++
T Consensus 171 ~~~~v~~lr~~~~D~II~l~H~G--~~~d~~la~~~~giD~IiggH~H 216 (281)
T cd07409 171 AQKEADKLKAQGVNKIIALSHSG--YEVDKEIARKVPGVDVIVGGHSH 216 (281)
T ss_pred HHHHHHHHHhcCCCEEEEEeccC--chhHHHHHHcCCCCcEEEeCCcC
Confidence 44667777888888877664221 22336788888887667777753
No 192
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=70.80 E-value=12 Score=26.07 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=31.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
++.+-++.+.++|++.++.+|.+.++- ++++.+.++.-
T Consensus 464 Pf~Dtie~aa~~Gv~aIiqPgGSirD~-evI~aAne~gI 501 (513)
T PRK00881 464 PFRDGVEAAAKAGITAIIQPGGSIRDE-EVIAAADEHGI 501 (513)
T ss_pred CchhHHHHHHHcCCeEEEeCCCCCChH-HHHHHHHHcCC
Confidence 457889999999999999999875554 67888998854
No 193
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=70.79 E-value=19 Score=21.94 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=26.7
Q ss_pred CHHHHHHHHHhcC--CcEEEeeccChhhHHHHHHHHHh
Q 035377 18 KAPQLIATTVNSG--VLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 18 ~~~~~~~~~~~~g--v~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
+..+.++++++.| +-++.+...+.+|..+++++..+
T Consensus 136 ~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~ 173 (228)
T TIGR01093 136 EIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNK 173 (228)
T ss_pred HHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHH
Confidence 3556778888876 66787777888888888877644
No 194
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=70.41 E-value=16 Score=25.97 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=19.4
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEE
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFA 35 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~ 35 (66)
.|||+|.|+-+.-+ .+.+..+..-..|+..++
T Consensus 78 GfID~H~HIESSm~--tP~~FA~~Vlp~GtTtvV 109 (584)
T COG1001 78 GFIDAHLHIESSML--TPSEFARAVLPHGTTTVV 109 (584)
T ss_pred ceeecceecccccc--CHHHHHHHhhccCceEEe
Confidence 48999999865332 244444555556665554
No 195
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=70.39 E-value=17 Score=22.38 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=23.2
Q ss_pred HHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEee
Q 035377 23 IATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60 (66)
Q Consensus 23 ~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 60 (66)
++++.+.|+.++++ |+..-+-+.+.+++++|+.+..+
T Consensus 88 v~~l~~~G~~~viv-Gtaa~~~~~l~~~~~~~g~ivvs 124 (228)
T PRK04128 88 IKDAYEIGVENVII-GTKAFDLEFLEKVTSEFEGITVS 124 (228)
T ss_pred HHHHHHCCCCEEEE-CchhcCHHHHHHHHHHcCCEEEE
Confidence 44555678888754 54333666677788888765544
No 196
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=70.34 E-value=16 Score=23.26 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=38.8
Q ss_pred CceEeeccCCCC---CcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 1 MKLFDAHCHLQD---PRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 1 m~~iDsH~Hl~~---~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
|+-||.-|=|.. ..-.++-++++.-..+++|.--+- +.++....+..++++++. .++|-||
T Consensus 1 M~~iDLN~DlGE~fG~w~mG~De~~l~lvsSANIACGfH-AGDp~~M~rtV~lA~e~g---V~IGAHP 64 (252)
T COG1540 1 MMKIDLNADLGEGFGAWRMGDDEALLPLVSSANIACGFH-AGDPLTMRRTVRLAKENG---VAIGAHP 64 (252)
T ss_pred CCceecccccccccCCcccCCcHHHHHHHhhhhHhhccc-CCCHHHHHHHHHHHHHcC---CeeccCC
Confidence 556777776642 111234466777666666643222 237888999999999874 4667887
No 197
>PRK06740 histidinol-phosphatase; Validated
Probab=69.91 E-value=5.7 Score=25.85 Aligned_cols=19 Identities=5% Similarity=0.188 Sum_probs=15.6
Q ss_pred CHHHHHHHHHhcCCcEEEe
Q 035377 18 KAPQLIATTVNSGVLHFAV 36 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~ 36 (66)
.+++.+++|.+.|++.+-.
T Consensus 62 ~~e~yv~~Ai~~G~~~ig~ 80 (331)
T PRK06740 62 WIDLYLEEALRKGIKEVGI 80 (331)
T ss_pred hHHHHHHHHHHCCCcEEEE
Confidence 3889999999999986643
No 198
>PRK06687 chlorohydrolase; Validated
Probab=69.59 E-value=3 Score=27.41 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=8.9
Q ss_pred eEeeccCCCC
Q 035377 3 LFDAHCHLQD 12 (66)
Q Consensus 3 ~iDsH~Hl~~ 12 (66)
+||+|+|+..
T Consensus 60 lIn~H~H~~~ 69 (419)
T PRK06687 60 LVNCHTHSAM 69 (419)
T ss_pred eeeeccCCCc
Confidence 8999999964
No 199
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=69.42 E-value=25 Score=22.61 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCcEEEeeccC--hhhHHHHHHHHHhCC
Q 035377 19 APQLIATTVNSGVLHFAVNGVS--EEDWNLVKDMSERHP 55 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~--~~~~~~~~~l~~~~~ 55 (66)
..+.++++.+.|++.+++++.. ..+-+++.+.++++.
T Consensus 76 v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~g 114 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESG 114 (286)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 5678889999999988776543 333467888888873
No 200
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=69.32 E-value=2.4 Score=28.16 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=9.0
Q ss_pred eEeeccCCCC
Q 035377 3 LFDAHCHLQD 12 (66)
Q Consensus 3 ~iDsH~Hl~~ 12 (66)
+||+|+|++.
T Consensus 61 lVn~H~H~~~ 70 (451)
T PRK08203 61 LVNTHHHFYQ 70 (451)
T ss_pred eEeccccccc
Confidence 8999999975
No 201
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=69.12 E-value=13 Score=21.21 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=20.9
Q ss_pred CHHHHHHHHHhcCCcE-EEeeccC----hhhHHHHHHHHHhC
Q 035377 18 KAPQLIATTVNSGVLH-FAVNGVS----EEDWNLVKDMSERH 54 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~-~~~~~~~----~~~~~~~~~l~~~~ 54 (66)
...+++++.+++|+.. .+.+|.. .+++++..+..++.
T Consensus 66 ~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~ 107 (128)
T cd02072 66 DCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEM 107 (128)
T ss_pred HHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHc
Confidence 4667778888888733 3445543 34555444444443
No 202
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=69.02 E-value=2.6 Score=27.16 Aligned_cols=11 Identities=45% Similarity=0.531 Sum_probs=9.3
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.|||+|+|++.
T Consensus 41 Glin~H~H~~~ 51 (377)
T TIGR01224 41 GLVDPHTHLVF 51 (377)
T ss_pred cEEecccCccc
Confidence 38999999974
No 203
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=68.71 E-value=28 Score=22.28 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=32.4
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
|.-.=+++|.+.|.+++.+.-.++++.+++.++-++++-=...+|+|
T Consensus 150 Dq~~Gv~~Aie~Gyk~IaVTv~~~~~a~~iRe~e~~~~~~~~if~VH 196 (259)
T TIGR03275 150 DQIKGVEKAIELGYKKIAVTVADAEDAKAIRELESESGIDIIIFAVH 196 (259)
T ss_pred cHHHHHHHHHHcCCceEEEEecCHHHHHHHHHhccccCCcEEEEEEE
Confidence 34445677888899887666668888888888876654323456666
No 204
>PLN02884 6-phosphofructokinase
Probab=68.42 E-value=34 Score=23.23 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
+..+.+++++..++.||+.++++|-+ .++.-+.+|++
T Consensus 128 ~~~~~~~i~~~L~~~~Id~LivIGGd-gS~~~a~~L~~ 164 (411)
T PLN02884 128 GGAKTSDIVDSIEARGINMLFVLGGN-GTHAGANAIHN 164 (411)
T ss_pred CCccHHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHHH
Confidence 34468899999999999999999964 55555555554
No 205
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=68.31 E-value=14 Score=22.18 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
++-.++||.+.|++.+++-+++-....+++++.+..
T Consensus 16 le~a~erA~elgik~~vVAS~tG~tA~k~lemveg~ 51 (186)
T COG1751 16 LEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD 51 (186)
T ss_pred HHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC
Confidence 445567999999999988777777777777777653
No 206
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=68.30 E-value=28 Score=23.97 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH---hCCCeEeeeee
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE---RHPSVIPCFGV 63 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~---~~~~i~~~~Gi 63 (66)
.+.+++++..++.||..++++|.+ .+...+.+|++ +...-...+|+
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vIGGd-gT~~~A~~L~ee~~~~g~~I~VIGI 211 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTLGGD-GTHRGALAIYKELRRRKLNISVVGI 211 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHHHHHhCCCceEEEe
Confidence 478899999999999999999964 44444444443 34322355554
No 207
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=68.21 E-value=20 Score=23.01 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVS-------EEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~l~~~ 53 (66)
..++++...++|+.++++.|++ .++-.++++.+.+
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~ 68 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVE 68 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHH
Confidence 5678888889999999988874 4555566665554
No 208
>PRK07329 hypothetical protein; Provisional
Probab=67.69 E-value=5.3 Score=24.68 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=17.3
Q ss_pred eEeeccCCCCC-cCCCCHHHHHHHHH
Q 035377 3 LFDAHCHLQDP-RIFHKAPQLIATTV 27 (66)
Q Consensus 3 ~iDsH~Hl~~~-~~~~~~~~~~~~~~ 27 (66)
++|.|+|.... .-.+..++.+++|.
T Consensus 1 ~~D~H~Ht~~s~d~~~~~ee~~~~A~ 26 (246)
T PRK07329 1 IRDQHLHTHFSFDSDAKFEDYLTHFD 26 (246)
T ss_pred CcccccCCCCCCCCcchHHHHHHHhc
Confidence 36999998654 22345788888875
No 209
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=67.57 E-value=28 Score=23.86 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=27.2
Q ss_pred eeccCCCCC-cC-------CCCHHHHHHHHHhcCCcEEEeeccC
Q 035377 5 DAHCHLQDP-RI-------FHKAPQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 5 DsH~Hl~~~-~~-------~~~~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
|--|||+.. .| ++.+.++.+.+.+++|.-|++|.-.
T Consensus 257 Dg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~IFAVT~~ 300 (423)
T smart00187 257 DGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPIFAVTKK 300 (423)
T ss_pred CCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceEEEEEccc
Confidence 567999753 21 3568899999999999988877644
No 210
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=67.44 E-value=8.2 Score=24.48 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=14.7
Q ss_pred EeeccCCCCCcCCCCHHHHHHHHHhcCC
Q 035377 4 FDAHCHLQDPRIFHKAPQLIATTVNSGV 31 (66)
Q Consensus 4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv 31 (66)
+|.||||+.. -..+.+.+.++..|+
T Consensus 5 ~elH~Hl~Gs---~~~~~l~~~~~~~~~ 29 (325)
T cd01320 5 AELHLHLDGS---LRPETILELAKKNGI 29 (325)
T ss_pred eEEeecccCC---CCHHHHHHHHHHhCC
Confidence 7999999842 134444444544443
No 211
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=67.36 E-value=10 Score=24.28 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=22.2
Q ss_pred cCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377 29 SGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 29 ~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
.|..++++.+|.+++...+.+....++-+.|.+|
T Consensus 188 ~g~~G~VVgaT~p~e~~~iR~~~~~~~iL~PGig 221 (278)
T PRK00125 188 YGSIGLVVGATFPPELAAVRKILGGMPLLIPGIG 221 (278)
T ss_pred CCCCEEEECCCCHHHHHHHHHhCCCCeEEeCCcC
Confidence 5777777666777888777766544444555554
No 212
>PLN02757 sirohydrochlorine ferrochelatase
Probab=67.28 E-value=22 Score=20.65 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhcCCcEEEeec------cCh-hhHHH-HHHHHHhCCCeE----eeeeecC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNG------VSE-EDWNL-VKDMSERHPSVI----PCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~------~~~-~~~~~-~~~l~~~~~~i~----~~~GiHP 65 (66)
+++++.++++.+.|.++++++= ... +|..+ +.++.++||++. ..+|.||
T Consensus 58 Psl~eal~~l~~~g~~~vvVvP~FL~~G~H~~~DIp~~v~~~~~~~p~~~i~~~~pLG~~p 118 (154)
T PLN02757 58 PSIKDAFGRCVEQGASRVIVSPFFLSPGRHWQEDIPALTAEAAKEHPGVKYLVTAPIGLHE 118 (154)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEhhhcCCcchHhHHHHHHHHHHHHCCCcEEEECCCCCCCH
Confidence 5789999998888999877642 222 34444 445666788632 3667776
No 213
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=67.25 E-value=25 Score=21.79 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC--CeEee
Q 035377 22 LIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP--SVIPC 60 (66)
Q Consensus 22 ~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~--~i~~~ 60 (66)
-++++.+.|++++++-+...++.+.+.+++++|+ .+..+
T Consensus 87 ~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvs 127 (232)
T PRK13586 87 KAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVS 127 (232)
T ss_pred HHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEE
Confidence 3466677899998654456677778888888884 25444
No 214
>PTZ00124 adenosine deaminase; Provisional
Probab=67.24 E-value=8.8 Score=25.38 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=17.1
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCC
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGV 31 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv 31 (66)
=++.||||+.. -..+.+++-|+++|+
T Consensus 37 KvELH~HLdGs---i~~~tl~~La~~~~~ 62 (362)
T PTZ00124 37 KCELHCHLDLC---FSVDFFLSCIRKYNL 62 (362)
T ss_pred ceeEeecccCC---CCHHHHHHHHHHcCC
Confidence 47999999852 235566666666665
No 215
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=66.74 E-value=20 Score=20.32 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=21.9
Q ss_pred CcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377 13 PRIFHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 13 ~~~~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
+++.++.++.+++..+.|++.++++..
T Consensus 73 ~Wl~P~~~~~l~~l~~~G~~~i~v~p~ 99 (135)
T cd00419 73 EWLEPSTDDALEELAKEGVKNVVVVPI 99 (135)
T ss_pred CCCCCCHHHHHHHHHHcCCCeEEEECC
Confidence 445678999999999999998777654
No 216
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=66.71 E-value=5.7 Score=21.91 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=28.3
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
+-|+|.... ..+++++.+ ++++.++..| +.-+-+++.+..++. .++...|=|
T Consensus 6 ~sD~H~~~~------~~~~~~~~~--~~~d~vi~~G-Di~~~~~~~~~~~~~-~~~~v~GNH 57 (156)
T PF12850_consen 6 ISDLHGNLD------ALEAVLEYI--NEPDFVIILG-DIFDPEEVLELLRDI-PVYVVRGNH 57 (156)
T ss_dssp EE--TTTHH------HHHHHHHHH--TTESEEEEES--SCSHHHHHHHHHHH-EEEEE--CC
T ss_pred EeCCCCChh------HHHHHHHHh--cCCCEEEECC-CchhHHHHHHHHhcC-CEEEEeCCc
Confidence 356664322 356788877 4577787777 443335556555555 577777766
No 217
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=66.57 E-value=11 Score=22.38 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHH
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMS 51 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~ 51 (66)
.|+..++.++++.|.+ ++.+|+.......+.+.+
T Consensus 116 ~DF~~Lv~~lre~G~~-V~v~g~~~~ts~~L~~ac 149 (160)
T TIGR00288 116 ADFLPVINKAKENGKE-TIVIGAEPGFSTALQNSA 149 (160)
T ss_pred HhHHHHHHHHHHCCCE-EEEEeCCCCChHHHHHhc
Confidence 4667777777777754 445564333333333333
No 218
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=66.46 E-value=24 Score=20.65 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHHHHHhC----CCeEeeeeec
Q 035377 19 APQLIATTVNSGVLHFAVNGVS-------EEDWNLVKDMSERH----PSVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~l~~~~----~~i~~~~GiH 64 (66)
++++++.+.+.+++.++..|-- .+.+..+.+..++. ..++...|-|
T Consensus 30 ~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~GNH 86 (223)
T cd00840 30 FEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIAGNH 86 (223)
T ss_pred HHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 5777788888899987776631 12233444444433 2478888877
No 219
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=66.40 E-value=29 Score=21.58 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVS-------EEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~l~~~ 53 (66)
..++++.+.+.|+.++++.|++ .++..++++.+.+
T Consensus 20 ~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~ 61 (281)
T cd00408 20 LRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVE 61 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHH
Confidence 5677888888899998888763 4555556555443
No 220
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=66.38 E-value=36 Score=23.34 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH---hCCCeEeeeee
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE---RHPSVIPCFGV 63 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~---~~~~i~~~~Gi 63 (66)
..+.+++++..++.||..++++|-+ .+.+.+.+|++ +...-...+|+
T Consensus 158 ~~~~~~iv~~L~~~~I~~L~vIGGd-gT~~gA~~l~ee~~~~g~~I~VIGI 207 (443)
T PRK06830 158 PQDPEEIVDTLERMNINILFVIGGD-GTLRGASAIAEEIERRGLKISVIGI 207 (443)
T ss_pred chhHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHHHHHhCCCceEEEe
Confidence 3478899999999999999999964 44444444444 33322355554
No 221
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=66.20 E-value=29 Score=21.59 Aligned_cols=35 Identities=9% Similarity=-0.037 Sum_probs=27.1
Q ss_pred CHHHHHHHHHhcC--CcEEEeeccChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSG--VLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~g--v~~~~~~~~~~~~~~~~~~l~~ 52 (66)
++.+++.++++.| |-++.+...+.+|..+++++..
T Consensus 143 ~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~~~~ 179 (238)
T PRK13575 143 ELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMS 179 (238)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHH
Confidence 4556778888765 7788888888999888887754
No 222
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=66.19 E-value=23 Score=22.85 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCcEEEeecc--ChhhHHHHHHHHHhC
Q 035377 19 APQLIATTVNSGVLHFAVNGV--SEEDWNLVKDMSERH 54 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~--~~~~~~~~~~l~~~~ 54 (66)
..+.++++-+.||+.+++++. .+++.+++.++++++
T Consensus 78 v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~ 115 (291)
T PRK05678 78 AADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERK 115 (291)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 567888999999998777654 455555888899886
No 223
>PLN02599 dihydroorotase
Probab=66.13 E-value=36 Score=22.57 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=16.4
Q ss_pred EeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEe
Q 035377 4 FDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAV 36 (66)
Q Consensus 4 iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~ 36 (66)
-|.|+||-. ++..+.+--.-..|+..+++
T Consensus 29 ~d~h~hlr~----~~~~~~~~~~~~gg~t~~i~ 57 (364)
T PLN02599 29 DDWHLHLRD----GAKLAAVVPHSARHFGRAIV 57 (364)
T ss_pred cceeeEccC----cHHHHhhhHHhcCCcCEEEE
Confidence 589999954 22333333444456666554
No 224
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=66.11 E-value=11 Score=24.37 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHHhcCCcEEEeecc--ChhhHHHHHHHHHhCC-CeEeeeeecC
Q 035377 22 LIATTVNSGVLHFAVNGV--SEEDWNLVKDMSERHP-SVIPCFGVHP 65 (66)
Q Consensus 22 ~~~~~~~~gv~~~~~~~~--~~~~~~~~~~l~~~~~-~i~~~~GiHP 65 (66)
-++++++.|+..++.++. --++.+.+.+++++.. +|..+.|+|.
T Consensus 43 El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~ 89 (308)
T PF02126_consen 43 ELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYK 89 (308)
T ss_dssp HHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-S
T ss_pred HHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCc
Confidence 345667899998887653 1246677788888865 5889999984
No 225
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=65.99 E-value=2.7 Score=27.93 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=9.1
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.|||+|+|+..
T Consensus 67 G~id~H~Hl~~ 77 (443)
T PRK09045 67 GLINAHTHAAM 77 (443)
T ss_pred CEeccccChhh
Confidence 38999999963
No 226
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=65.92 E-value=25 Score=21.94 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=26.5
Q ss_pred CHHHHHHHHHhcC--CcEEEeeccChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSG--VLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~g--v~~~~~~~~~~~~~~~~~~l~~ 52 (66)
+..++++++++.| |-++.+...+.+|..+++++..
T Consensus 153 ~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~ 189 (253)
T PRK02412 153 EIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATR 189 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHH
Confidence 4566788888876 6678888888888888877654
No 227
>PLN02591 tryptophan synthase
Probab=65.85 E-value=24 Score=22.23 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC-eEe
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIP 59 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-i~~ 59 (66)
++.+++.+++++.|+..+.+++-+.. -+++.++++..++ ||.
T Consensus 118 ee~~~~~~~~~~~gl~~I~lv~Ptt~-~~ri~~ia~~~~gFIY~ 160 (250)
T PLN02591 118 EETEALRAEAAKNGIELVLLTTPTTP-TERMKAIAEASEGFVYL 160 (250)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHhCCCcEEE
Confidence 45678899999999998776643221 2244444444443 553
No 228
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=65.59 E-value=30 Score=21.53 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=6.9
Q ss_pred HHHHHHHHHhcCCc
Q 035377 19 APQLIATTVNSGVL 32 (66)
Q Consensus 19 ~~~~~~~~~~~gv~ 32 (66)
++..++...++|..
T Consensus 71 P~~~i~~~~~aGad 84 (229)
T PRK09722 71 PQDYIDQLADAGAD 84 (229)
T ss_pred HHHHHHHHHHcCCC
Confidence 44455555555544
No 229
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=65.50 E-value=18 Score=21.74 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
++..+..+++++.||. +..+|....+.+.+.+++.+
T Consensus 122 ~~~~~~a~~lk~~gv~-i~~VgvG~~~~~~L~~ias~ 157 (224)
T cd01475 122 DDVSEVAAKARALGIE-MFAVGVGRADEEELREIASE 157 (224)
T ss_pred ccHHHHHHHHHHCCcE-EEEEeCCcCCHHHHHHHhCC
Confidence 4577788889999986 55667655566777777754
No 230
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=65.44 E-value=13 Score=22.32 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCcEEEeec--------cChhhHHHHHHHHHhCCCeEe
Q 035377 21 QLIATTVNSGVLHFAVNG--------VSEEDWNLVKDMSERHPSVIP 59 (66)
Q Consensus 21 ~~~~~~~~~gv~~~~~~~--------~~~~~~~~~~~l~~~~~~i~~ 59 (66)
.+.+.+.+.|+--++-+| ........+.+++++||++..
T Consensus 121 ~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P~l~i 167 (273)
T PF04909_consen 121 PIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLERFPDLRI 167 (273)
T ss_dssp HHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHHHSTTSEE
T ss_pred HHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHHHhcCCeE
Confidence 677777777775555544 223334445566677776443
No 231
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=65.30 E-value=26 Score=20.60 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCcEEEe
Q 035377 19 APQLIATTVNSGVLHFAV 36 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~ 36 (66)
..+.++.+++.|+...+.
T Consensus 93 ~~~~~~~~~~~g~~~~~~ 110 (210)
T TIGR01163 93 IHRLLQLIKDLGAKAGIV 110 (210)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 344555555556554443
No 232
>PRK09356 imidazolonepropionase; Validated
Probab=65.18 E-value=3.3 Score=26.94 Aligned_cols=11 Identities=45% Similarity=0.564 Sum_probs=9.2
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||+|+|++.
T Consensus 66 G~id~H~Hl~~ 76 (406)
T PRK09356 66 GLIDCHTHLVF 76 (406)
T ss_pred ceEecCCCccc
Confidence 38999999974
No 233
>PLN02564 6-phosphofructokinase
Probab=64.94 E-value=44 Score=23.31 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
..+.+++++..++.||+.++++|.+ .++.-+..|++
T Consensus 162 ~~~~~~iv~~L~~~~Id~LivIGGD-GS~~gA~~L~e 197 (484)
T PLN02564 162 GHDTSKIVDSIQDRGINQVYIIGGD-GTQKGASVIYE 197 (484)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCc-hHHHHHHHHHH
Confidence 4578999999999999999999964 44444444444
No 234
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=64.52 E-value=23 Score=20.13 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=8.0
Q ss_pred CHHHHHHHHHhcCC
Q 035377 18 KAPQLIATTVNSGV 31 (66)
Q Consensus 18 ~~~~~~~~~~~~gv 31 (66)
...+++++.++.|.
T Consensus 70 ~~~~~~~~L~~~~~ 83 (137)
T PRK02261 70 DCRGLREKCIEAGL 83 (137)
T ss_pred HHHHHHHHHHhcCC
Confidence 35556666666644
No 235
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=64.37 E-value=26 Score=22.20 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCcEEEeecc-------ChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGV-------SEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~-------~~~~~~~~~~l~~~ 53 (66)
..++++...+.||+++++.|+ +.++..++++.+.+
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~ 69 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVS 69 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHH
Confidence 667888888999999988776 45566666665444
No 236
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=64.16 E-value=27 Score=20.44 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=6.9
Q ss_pred HHHHHHHHhcCCcE
Q 035377 20 PQLIATTVNSGVLH 33 (66)
Q Consensus 20 ~~~~~~~~~~gv~~ 33 (66)
.+.++.+++.|+.-
T Consensus 95 ~~~~~~~~~~~~~~ 108 (211)
T cd00429 95 HRTIQLIKELGMKA 108 (211)
T ss_pred HHHHHHHHHCCCeE
Confidence 34455555555543
No 237
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=64.07 E-value=36 Score=21.82 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=32.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh-CCCeEeeeeec
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER-HPSVIPCFGVH 64 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~-~~~i~~~~GiH 64 (66)
|.-+=+++|.+.|.+++.+.-+++++.+++.+|-+. .+++ ..+|+|
T Consensus 150 Dq~~Gv~kAie~Gyk~IaVTV~~~~~A~~iRele~~~~~~~-~if~VH 196 (258)
T PF09872_consen 150 DQVEGVKKAIEMGYKRIAVTVADAEDAKKIRELEKEEGVNI-YIFGVH 196 (258)
T ss_pred cHHHHHHHHHHcCCceEEEEecCHHHHHHHHHhhccCCCce-EEEEEE
Confidence 444556788889999887666788888888887664 4454 345666
No 238
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=64.00 E-value=32 Score=21.28 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
..+.++++++.|++.+++++-... ..-.++++++|.+=..+|=|++
T Consensus 160 ~~~~v~~~~~~~~D~iVvl~H~g~--~~d~~la~~~~~iD~IlgGH~H 205 (257)
T cd07406 160 ARELVDELREQGADLIIALTHMRL--PNDKRLAREVPEIDLILGGHDH 205 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCc--hhhHHHHHhCCCCceEEecccc
Confidence 334455677888888877764332 2335678888876666676763
No 239
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=63.99 E-value=27 Score=21.97 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVS-------EEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~l~~~ 53 (66)
..++++.+.+.||+++++.|+. .++..++++.+.+
T Consensus 24 l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~ 65 (292)
T PRK03170 24 LRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVE 65 (292)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHH
Confidence 5678888888999998877763 4555566654443
No 240
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=63.93 E-value=21 Score=23.25 Aligned_cols=42 Identities=14% Similarity=0.353 Sum_probs=30.6
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
+.+++++..++.+|+.++++|-+ .++..+..|++. + .+.+|+
T Consensus 82 ~~~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~~~--g-i~vigi 123 (324)
T TIGR02483 82 GDDKIVANLKELGLDALIAIGGD-GTLGIARRLADK--G-LPVVGV 123 (324)
T ss_pred HHHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHHhc--C-CCEEee
Confidence 46788899999999999999964 566666677663 2 445554
No 241
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=63.87 E-value=23 Score=19.67 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
.+++++++..|..++++-..+.+++.++.+.++..
T Consensus 38 ~~~~~~W~~~G~~KiVl~~~~~~el~~l~~~a~~~ 72 (115)
T cd02430 38 PELLRAWEREGQKKIVLKVNSEEELLELKKKAKSL 72 (115)
T ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHHHHHc
Confidence 45788899999888877777888888888777653
No 242
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=63.65 E-value=26 Score=25.74 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHH---HhCCC-eEeeeee
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMS---ERHPS-VIPCFGV 63 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~---~~~~~-i~~~~Gi 63 (66)
++.+.+.+..++.||+.++++|-+ +++..+.+|+ ++||. -.+.+|+
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGd-gs~~~a~~L~~~~~~y~~~~i~vVgI 514 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGF-EAYKGLLQLREAREQYEEFCIPMVLI 514 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCh-hHHHHHHHHHHHHhhCCCCCccEEEe
Confidence 467788889999999999999964 5555555555 45663 3466665
No 243
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=63.53 E-value=15 Score=22.13 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhcC--CcEEEeeccChhhHHHHHHHHHhC
Q 035377 18 KAPQLIATTVNSG--VLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 18 ~~~~~~~~~~~~g--v~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
+..++++++.+.| +-++.+...+.+|..+++++.++.
T Consensus 131 ~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~ 169 (224)
T PF01487_consen 131 ELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEF 169 (224)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 4677888998888 567888888899988887776654
No 244
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=63.21 E-value=23 Score=23.80 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCC---eEeeeee
Q 035377 45 NLVKDMSERHPS---VIPCFGV 63 (66)
Q Consensus 45 ~~~~~l~~~~~~---i~~~~Gi 63 (66)
..++++|+++|+ ||+++|+
T Consensus 119 ldAl~iA~~nP~k~vVF~avGF 140 (364)
T PRK15062 119 LDALKIARENPDKEVVFFAIGF 140 (364)
T ss_pred HHHHHHHHHCCCCeEEEEecCc
Confidence 357889999975 8899996
No 245
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=63.06 E-value=2.6 Score=25.91 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=16.6
Q ss_pred HHHhcCCcEEEeeccC-hhhHHHHHHHHHhC
Q 035377 25 TTVNSGVLHFAVNGVS-EEDWNLVKDMSERH 54 (66)
Q Consensus 25 ~~~~~gv~~~~~~~~~-~~~~~~~~~l~~~~ 54 (66)
++.+.|+..++..+.. .+..+.+.+..++.
T Consensus 60 e~l~~GtTt~~d~~~~~~~~~~a~~~a~~~~ 90 (263)
T cd01305 60 DMRETGIGAFADFREGGVEGIELLRRALGKL 90 (263)
T ss_pred HHHhcCCeEEEEccCcchhHHHHHHHHHHhc
Confidence 4466788776665432 34445555555554
No 246
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=62.95 E-value=35 Score=21.31 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=20.8
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC-CeEeeeeecC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP-SVIPCFGVHP 65 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~-~i~~~~GiHP 65 (66)
++++.++...++|.+.+..=.-......+.++..++.. ++.+++.+.|
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP 127 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCP 127 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECC
Confidence 45556666666665533221111122334444444442 1255555544
No 247
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=62.90 E-value=23 Score=23.79 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCC---eEeeeee
Q 035377 45 NLVKDMSERHPS---VIPCFGV 63 (66)
Q Consensus 45 ~~~~~l~~~~~~---i~~~~Gi 63 (66)
..++++|+++|+ ||+++|+
T Consensus 125 ldAl~iA~~nPdk~VVF~avGF 146 (369)
T TIGR00075 125 MDALKIAKENPDRKVVFFAIGF 146 (369)
T ss_pred HHHHHHHHHCCCCeEEEEecCc
Confidence 357889999975 8899996
No 248
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=62.84 E-value=38 Score=21.73 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCCcEEEeecc-------ChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSGVLHFAVNGV-------SEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~-------~~~~~~~~~~l~~ 52 (66)
.+.++++...+.||.++++.|+ +.++.+++++.+.
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~ 71 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVV 71 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHH
Confidence 3567888888899999988886 3455556655444
No 249
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=62.79 E-value=35 Score=21.36 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHH-HHHhCCCeEeeeeec
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKD-MSERHPSVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~-l~~~~~~i~~~~GiH 64 (66)
..++++.+.+.| .++..+|.+++..+++.+ +.++| ++-. +|.|
T Consensus 94 ~~~ll~~~~~~~-~~v~llG~~~~v~~~a~~~l~~~y-~l~i-~g~~ 137 (243)
T PRK03692 94 WEALMARAGKEG-TPVFLVGGKPEVLAQTEAKLRTQW-NVNI-VGSQ 137 (243)
T ss_pred HHHHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHHHh-CCEE-EEEe
Confidence 457788888888 557778999988887766 45667 6543 4554
No 250
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=62.72 E-value=25 Score=23.56 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCC---eEeeeee
Q 035377 45 NLVKDMSERHPS---VIPCFGV 63 (66)
Q Consensus 45 ~~~~~l~~~~~~---i~~~~Gi 63 (66)
..++++|+++|+ ||+++|+
T Consensus 114 ~dAl~iA~~nP~k~vVF~avGF 135 (355)
T PF01924_consen 114 LDALKIAKENPDKEVVFFAVGF 135 (355)
T ss_dssp HHHHHHHHH-TTSEEEEEEEE-
T ss_pred HHHHHHHHhCCCCceEEEEeCc
Confidence 357889999975 8899996
No 251
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=62.54 E-value=30 Score=21.90 Aligned_cols=35 Identities=9% Similarity=0.100 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCcEEEeecc-------ChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGV-------SEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~-------~~~~~~~~~~l~~~ 53 (66)
..++++...+.||.++++.|+ +.++..++++.+.+
T Consensus 23 l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~ 64 (289)
T cd00951 23 YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVE 64 (289)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHH
Confidence 567888888999999988886 34555666654433
No 252
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=62.51 E-value=33 Score=20.87 Aligned_cols=61 Identities=13% Similarity=0.032 Sum_probs=33.1
Q ss_pred eEeeccCCCC----CcCCCCHHHHHHHHHhc------CCcEEEeeccChh------hHHHHHHHHHhCCC-eEeeeeec
Q 035377 3 LFDAHCHLQD----PRIFHKAPQLIATTVNS------GVLHFAVNGVSEE------DWNLVKDMSERHPS-VIPCFGVH 64 (66)
Q Consensus 3 ~iDsH~Hl~~----~~~~~~~~~~~~~~~~~------gv~~~~~~~~~~~------~~~~~~~l~~~~~~-i~~~~GiH 64 (66)
+-|.|..... ..+.++-.+++++..+. +.+.+++.| |+. .....++..++.+. ++...|=|
T Consensus 4 ~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaG-Dl~~~~~~~~~~~~l~~l~~l~~~v~~V~GNH 81 (232)
T cd07393 4 IADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPG-DISWAMKLEEAKLDLAWIDALPGTKVLLKGNH 81 (232)
T ss_pred EEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcC-CCccCCChHHHHHHHHHHHhCCCCeEEEeCCc
Confidence 5688866432 13444445555555554 667666655 432 33344444444443 77787876
No 253
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=62.48 E-value=4.5 Score=26.87 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=8.7
Q ss_pred eEeeccCCCC
Q 035377 3 LFDAHCHLQD 12 (66)
Q Consensus 3 ~iDsH~Hl~~ 12 (66)
|||+|+|+..
T Consensus 67 lVn~H~Hl~~ 76 (429)
T cd01303 67 FIDTHIHAPQ 76 (429)
T ss_pred eeeeeecccc
Confidence 8999999964
No 254
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=62.43 E-value=14 Score=25.86 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCe
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSV 57 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i 57 (66)
+.+-++.|.++||+.++.+|.+..|-+ +++-+.++.-.
T Consensus 467 F~D~i~~aA~aGi~aIIqPGGSirD~e-VI~aAde~gia 504 (515)
T COG0138 467 FPDGIDAAAKAGIKAIIQPGGSIRDQE-VIAAADEHGIA 504 (515)
T ss_pred CcchHHHHHHcCCeEEECCCCccccHH-HHHHHHhcCcE
Confidence 455678888999999999999888865 56678887543
No 255
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=62.35 E-value=3.9 Score=27.05 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=9.1
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||+|+|++.
T Consensus 55 g~vd~H~H~~~ 65 (424)
T PRK08393 55 GFINAHTHSPM 65 (424)
T ss_pred CeeeeccCcch
Confidence 38999999863
No 256
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=62.32 E-value=17 Score=24.59 Aligned_cols=36 Identities=28% Similarity=0.169 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
+.+-++.|.+.||+.++.+|.+.+|-+ +++.+.++.
T Consensus 342 F~D~Id~Aa~~GV~aIiQPGGSiRD~e-vI~aane~g 377 (390)
T PRK07106 342 FGDNIERAAKSGVKYIAQPGGSIRDDN-VIETCNKYG 377 (390)
T ss_pred CCchHHHHHHcCCEEEECCCCCCCcHH-HHHHHHHhC
Confidence 455678889999999999999888865 566778775
No 257
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=62.18 E-value=35 Score=22.40 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEee
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 60 (66)
.+.++.++++.+.|.+-++.+|.. -.+.+.+.+++||++.+.
T Consensus 84 ~~~~~~~~~~a~~g~~lI~~~gf~--~~d~~~~va~~~Pd~~F~ 125 (345)
T COG1744 84 ADYERALRALAEDGYDLIFGTGFA--FSDALEKVAAEYPDVKFV 125 (345)
T ss_pred hHHHHHHHHHHhcCCCEEEEeccc--hhhHHHHHHHHCCCCEEE
Confidence 467778888888887666655544 444567788899986553
No 258
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=62.14 E-value=12 Score=20.93 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCcEEEeeccChhh
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEED 43 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~ 43 (66)
..++.+|.+.|.+++++.|+.+.+
T Consensus 42 ~~~il~Af~~GADGV~V~gC~~g~ 65 (124)
T PF02662_consen 42 PEFILRAFEKGADGVLVAGCHPGD 65 (124)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCC
Confidence 567888889999999999987665
No 259
>PRK08204 hypothetical protein; Provisional
Probab=62.10 E-value=3.8 Score=27.15 Aligned_cols=10 Identities=40% Similarity=0.471 Sum_probs=8.6
Q ss_pred ceEeeccCCC
Q 035377 2 KLFDAHCHLQ 11 (66)
Q Consensus 2 ~~iDsH~Hl~ 11 (66)
.+||+|+|+.
T Consensus 58 GlId~H~H~~ 67 (449)
T PRK08204 58 GLVDTHRHTW 67 (449)
T ss_pred CEEeeeeccc
Confidence 3899999985
No 260
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=62.03 E-value=17 Score=24.17 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=28.7
Q ss_pred eeccCCCCCcCCCCHHHHHHHHHhcCCcEEE-eec----cChhhHHHHHHHHHhCC
Q 035377 5 DAHCHLQDPRIFHKAPQLIATTVNSGVLHFA-VNG----VSEEDWNLVKDMSERHP 55 (66)
Q Consensus 5 DsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~-~~~----~~~~~~~~~~~l~~~~~ 55 (66)
|.|.||+......+ ++.+++..++|++-+= -++ ...+.+.+.+.+|+++.
T Consensus 110 ~fHiHLYT~g~~~~-~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g 164 (353)
T COG2108 110 DFHIHLYTTGILAT-EEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYG 164 (353)
T ss_pred ceeEEEeeccccCC-HHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhC
Confidence 68999975333333 5667777777876431 221 13345556666666653
No 261
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=61.98 E-value=31 Score=21.52 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVS-------EEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~l~~~ 53 (66)
..++++...+.|+.++++.|+. .++..++++.+.+
T Consensus 23 ~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~ 64 (284)
T cd00950 23 LERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVE 64 (284)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHH
Confidence 5667788888999998877763 4556666665444
No 262
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=61.69 E-value=35 Score=21.06 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
++.+++++.+++.|++.++.++-+ ...+++..+++
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~P~-T~~~~i~~i~~ 150 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVAPT-TPDERIKKIAE 150 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHh
Confidence 356789999999999876554421 12334444444
No 263
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.68 E-value=35 Score=20.91 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC---CeEeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP---SVIPCFG 62 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~---~i~~~~G 62 (66)
+...+.+.+.+.|+..+=++-.++.-.+.+.++.++++ ++...+|
T Consensus 26 ~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG 73 (213)
T PRK06552 26 EALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAG 73 (213)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeee
Confidence 45567777888898865444445555666777888884 5666555
No 264
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=61.44 E-value=12 Score=22.57 Aligned_cols=37 Identities=11% Similarity=-0.060 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
..+++..++.+|+..+=.+..+.++.+...+...+.-
T Consensus 173 ~~~v~~aa~a~g~~~i~~~~~~~~d~~~~~~~~~~~~ 209 (221)
T PF03328_consen 173 RSKVVLAARAAGKPAIDGVFPDFEDAEGLEAEGFRAR 209 (221)
T ss_dssp HHHHHHHHHHTTEEEEEEEESSSSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCeEEEeeCCHHHHHHHHHHHHHHH
Confidence 5677888999998655555678888888777777653
No 265
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=61.27 E-value=37 Score=21.14 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=7.0
Q ss_pred HHHHHHHHHhcCCc
Q 035377 19 APQLIATTVNSGVL 32 (66)
Q Consensus 19 ~~~~~~~~~~~gv~ 32 (66)
..+++++.++.|++
T Consensus 101 ~~~lv~~ir~~Gmk 114 (224)
T KOG3111|consen 101 PAELVEKIREKGMK 114 (224)
T ss_pred HHHHHHHHHHcCCe
Confidence 44455555555544
No 266
>PF03361 Herpes_IE2_3: Herpes virus intermediate/early protein 2/3; InterPro: IPR005028 This domain of unknown function is found in the intermediate/early proteins of the Herpes virus. Many of these proteins play a role in transcriptional regulation.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=61.24 E-value=18 Score=21.48 Aligned_cols=31 Identities=10% Similarity=0.211 Sum_probs=24.4
Q ss_pred HhcCCcEEEeeccChhhHHHHH----HHHHhCCCe
Q 035377 27 VNSGVLHFAVNGVSEEDWNLVK----DMSERHPSV 57 (66)
Q Consensus 27 ~~~gv~~~~~~~~~~~~~~~~~----~l~~~~~~i 57 (66)
+..|+..+++-|.++.|+-.+. .++++||+.
T Consensus 104 r~Sd~rtm~I~AATp~Dfl~A~~lC~~~~~k~Pk~ 138 (162)
T PF03361_consen 104 RSSDYRTMIISAATPKDFLGAAKLCLPLAQKFPKQ 138 (162)
T ss_pred CCCCceEEEEeCCCcHHHHHHHHHHHHHHHhCCce
Confidence 5568888999999999987665 467889974
No 267
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=60.84 E-value=3.6 Score=26.62 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=21.2
Q ss_pred CceEeeccCCCCC------c----CCCCHHHHHHHHHhcCCcEE-Eeec
Q 035377 1 MKLFDAHCHLQDP------R----IFHKAPQLIATTVNSGVLHF-AVNG 38 (66)
Q Consensus 1 m~~iDsH~Hl~~~------~----~~~~~~~~~~~~~~~gv~~~-~~~~ 38 (66)
|++||.||.+-.. . .......-+.++++.|+... +.+.
T Consensus 6 ~~viD~H~D~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ggv~~~~~ai~ 54 (320)
T PF01244_consen 6 MPVIDGHCDTPYDLRDRGRDGDILRDNRGHVDLPRLREGGVRAQFFAIF 54 (320)
T ss_dssp S-EEEEEE-HHHHHHHHTTTTTTTTCTTSSSCHHHHHHHTEEEEEEEEE
T ss_pred CcEEEhhhhHHHHHHHhcccccccCCCcccccHHHHHhcCCCEEEEEEE
Confidence 5689999997321 0 11223445778888888763 3344
No 268
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=60.83 E-value=22 Score=18.41 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=22.3
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhHHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNL 46 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~ 46 (66)
...++..+++++.+++|+.-+++.+...+..+.
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~ 56 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLE 56 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHH
Confidence 345678899999999998766555544443333
No 269
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=60.81 E-value=26 Score=19.19 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVK 48 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~ 48 (66)
..++..+++++.++.|+.-.++.+.+.+..+..+
T Consensus 78 ~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l 111 (176)
T PF13419_consen 78 PYPGVRELLERLKAKGIPLVIVSNGSRERIERVL 111 (176)
T ss_dssp ESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHH
T ss_pred hhhhhhhhhhhcccccceeEEeecCCcccccccc
Confidence 3467899999999899887666555544444433
No 270
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=60.73 E-value=49 Score=26.03 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=42.0
Q ss_pred eEeeccCCCCCcCC--CCHHHHHHHHHhcCCcEEEeec-cChhhHHHHHHHHHhCCCeEeeee
Q 035377 3 LFDAHCHLQDPRIF--HKAPQLIATTVNSGVLHFAVNG-VSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~--~~~~~~~~~~~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
-+..|.|--..+++ .+.++++++|.+-|-+.+-+.- .....+..+.+.++++ ++..-.|
T Consensus 336 RVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~-giK~IyG 397 (1444)
T COG2176 336 RVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKY-GIKAIYG 397 (1444)
T ss_pred eEEEEeccchhhhcccCCHHHHHHHHHHcCCceEEEecCcchhhchHHHHhhhhc-CceEEEe
Confidence 46778887655554 4899999999999988764432 2467788889999986 4444444
No 271
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=60.59 E-value=33 Score=20.25 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=14.3
Q ss_pred HHHHHhcCCcEEEeeccCh-hhHHHHHHHHHhC
Q 035377 23 IATTVNSGVLHFAVNGVSE-EDWNLVKDMSERH 54 (66)
Q Consensus 23 ~~~~~~~gv~~~~~~~~~~-~~~~~~~~l~~~~ 54 (66)
++++.+.|.+.+.+.+... ....++++.++++
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~ 101 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKH 101 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHc
Confidence 4555555555444333322 2234445555544
No 272
>PRK07213 chlorohydrolase; Provisional
Probab=60.55 E-value=4.4 Score=26.39 Aligned_cols=11 Identities=45% Similarity=0.818 Sum_probs=9.3
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||+|+|+..
T Consensus 51 Glvd~H~H~~~ 61 (375)
T PRK07213 51 PLINAHTHIGD 61 (375)
T ss_pred ceeeeccccCc
Confidence 48999999974
No 273
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=60.30 E-value=20 Score=18.50 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHhcCCcEEEeecc
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
.+++++.+++..+.|++.++++-.
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvvPl 67 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIVPL 67 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEeC
Confidence 467899999999999998776543
No 274
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=60.27 E-value=14 Score=15.83 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=15.7
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHH
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDM 50 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l 50 (66)
+--+++.+|++.|+ +.+++++-++.
T Consensus 4 EW~~Li~eA~~~Gl--------s~eeir~FL~~ 28 (30)
T PF08671_consen 4 EWVELIKEAKESGL--------SKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHHHHTT----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--------CHHHHHHHHHh
Confidence 34578899998875 56666655543
No 275
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=60.25 E-value=51 Score=22.77 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=32.9
Q ss_pred HHHHHHHHHhc-CCcEEEeeccChhhHHHHHHHHHhCC-----CeEeeeee
Q 035377 19 APQLIATTVNS-GVLHFAVNGVSEEDWNLVKDMSERHP-----SVIPCFGV 63 (66)
Q Consensus 19 ~~~~~~~~~~~-gv~~~~~~~~~~~~~~~~~~l~~~~~-----~i~~~~Gi 63 (66)
+..++.+..+. ..-++++...++.++..+.-++.+|| +|+...++
T Consensus 328 L~~ll~~~~~~~~lpk~ily~Ln~~~~~~la~lag~F~~~~~~~vq~G~~W 378 (462)
T PF02614_consen 328 LSRLLDRFDNNGKLPKTILYSLNPTDNHELATLAGNFQDGGIPKVQLGGAW 378 (462)
T ss_dssp HHHHHHHHTTTTT-SEEEEEESSGGGHHHHHHHHHHST-TTSTTEEEB---
T ss_pred HHHHHHhccccCCCceeEEEecChhhHHHHHHHHhhcCCcCcceeeecCcc
Confidence 55566666555 34488888899999999999999999 88877665
No 276
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=60.13 E-value=4.5 Score=26.83 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=9.2
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||+|+|++.
T Consensus 56 G~vd~H~H~~~ 66 (430)
T PRK06038 56 GLVNTHTHAAM 66 (430)
T ss_pred CeeecccCcch
Confidence 38999999974
No 277
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=59.84 E-value=26 Score=21.78 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCcEEEeecc---Chh------hHHHHHHHHHhCCCeEeeeeecCC
Q 035377 19 APQLIATTVNSGVLHFAVNGV---SEE------DWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~---~~~------~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
..+.++++++.+++.+|+.+- +.. .-....+|+++.|++-..+|=|++
T Consensus 172 ~~~~v~~lr~~~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH 228 (277)
T cd07410 172 AKKYVPKLRAEGADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAILTGHQH 228 (277)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEEeCCCc
Confidence 445667777778887776642 111 112356788888887777776753
No 278
>PLN02417 dihydrodipicolinate synthase
Probab=59.74 E-value=42 Score=21.17 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVS-------EEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~l~~~ 53 (66)
..++++...+.||.++++.|++ .++..++++.+.+
T Consensus 24 ~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~ 65 (280)
T PLN02417 24 YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVN 65 (280)
T ss_pred HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHH
Confidence 5677788888999999888873 4555566665443
No 279
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=59.62 E-value=43 Score=21.35 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCcEEEeecc-------ChhhHHHHHHHHH
Q 035377 19 APQLIATTVNSGVLHFAVNGV-------SEEDWNLVKDMSE 52 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~-------~~~~~~~~~~l~~ 52 (66)
..++++...+.||.++++.|+ +.++..++++.+.
T Consensus 30 l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~ 70 (303)
T PRK03620 30 YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAV 70 (303)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHH
Confidence 567888888899999988886 4566666666543
No 280
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=59.56 E-value=18 Score=21.48 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
+.+..+++++.||. +.++|....+..++..++..
T Consensus 128 ~~~~a~~lk~~gV~-i~~vGiG~~~~~el~~ia~~ 161 (192)
T cd01473 128 LQDISLLYKEENVK-LLVVGVGAASENKLKLLAGC 161 (192)
T ss_pred HHHHHHHHHHCCCE-EEEEEeccccHHHHHHhcCC
Confidence 45566778888987 44566655566667777653
No 281
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=59.44 E-value=54 Score=23.24 Aligned_cols=36 Identities=3% Similarity=-0.123 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChh--------------hHHHHHHHHHh
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEE--------------DWNLVKDMSER 53 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~--------------~~~~~~~l~~~ 53 (66)
.+.+.+..+...||+.++++..++. +...++++.++
T Consensus 397 ~l~~~L~~~~~~Gv~nILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~ 446 (612)
T PRK08645 397 GLQSHLLGLHALGIRNVLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQ 446 (612)
T ss_pred HHHHHHHHHHHcCCceEEEccCCCCCCCCCCCCCCCccccHHHHHHHHHH
Confidence 4667778889999999877665532 23466777666
No 282
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=59.43 E-value=42 Score=21.10 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCcEEEeecc-------ChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGV-------SEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~-------~~~~~~~~~~l~~~ 53 (66)
..++++...+.||.++++.|+ +.++..++++.+.+
T Consensus 21 ~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~ 62 (285)
T TIGR00674 21 LEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVD 62 (285)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHH
Confidence 567778888899999888776 34555555554443
No 283
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=59.40 E-value=34 Score=20.12 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=27.0
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
.+.+...++++..++.|+.-.++.+...+..+..++
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~ 122 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLE 122 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH
Confidence 356778999999999999877776666666665555
No 284
>PRK12393 amidohydrolase; Provisional
Probab=59.24 E-value=5.5 Score=26.71 Aligned_cols=11 Identities=27% Similarity=0.429 Sum_probs=9.3
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.|||+|+|+..
T Consensus 60 G~VnaH~Hl~~ 70 (457)
T PRK12393 60 GWVNTHHHLFQ 70 (457)
T ss_pred CEeecccCccc
Confidence 38999999974
No 285
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=59.04 E-value=39 Score=22.96 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH---hCCCeEeeeee
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE---RHPSVIPCFGV 63 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~---~~~~i~~~~Gi 63 (66)
.+.+++..++.||+.++++|-+ .++..+.+|++ +...=.+.+|+
T Consensus 101 ~~~~~~~L~~~~Id~Li~IGGd-gS~~~a~~L~~~~~~~g~~i~vvgI 147 (403)
T PRK06555 101 LKVAAERLAADGVDILHTIGGD-DTNTTAADLAAYLAENGYDLTVVGL 147 (403)
T ss_pred HHHHHHHHHHcCCCEEEEECCh-hHHHHHHHHHHHHHHhCCCceEEEe
Confidence 5678889999999999999964 45555555544 23212355555
No 286
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=59.04 E-value=42 Score=21.03 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVS-------EEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~l~~~ 53 (66)
..++++...+.|+.++++.|++ .++..++.+++.+
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~ 65 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVE 65 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHH
Confidence 5667778888999999888864 4455555555443
No 287
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=58.75 E-value=11 Score=19.32 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=14.3
Q ss_pred cEEEeeccChhhHHHHHH
Q 035377 32 LHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~ 49 (66)
+++-++|+++++++.+++
T Consensus 7 K~IelvGtSp~S~d~Ai~ 24 (71)
T COG3360 7 KKIELVGTSPTSIDAAIA 24 (71)
T ss_pred EEEEEEecCCccHHHHHH
Confidence 457789999999987664
No 288
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=58.71 E-value=38 Score=22.18 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
+.+.+++..++.+|+.++++|-+ .+...+..|++
T Consensus 80 ~~~~~~~~l~~~~I~~Lv~IGGd-~s~~~a~~L~e 113 (338)
T cd00363 80 GRAKAAENLKKHGIDALVVIGGD-GSYTGADLLTE 113 (338)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCH-HHHHHHHHHHH
Confidence 46678899999999999999964 44554555444
No 289
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=58.55 E-value=4.3 Score=26.68 Aligned_cols=10 Identities=50% Similarity=0.743 Sum_probs=8.7
Q ss_pred eEeeccCCCC
Q 035377 3 LFDAHCHLQD 12 (66)
Q Consensus 3 ~iDsH~Hl~~ 12 (66)
+||+|+|+..
T Consensus 33 lVnaH~H~~~ 42 (381)
T cd01312 33 LINAHTHLEF 42 (381)
T ss_pred ccccccccch
Confidence 8999999954
No 290
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=58.38 E-value=34 Score=20.29 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhc--CCcEEEeeccChhhHHHHHHHHHh--CCCeEeeeee
Q 035377 16 FHKAPQLIATTVNS--GVLHFAVNGVSEEDWNLVKDMSER--HPSVIPCFGV 63 (66)
Q Consensus 16 ~~~~~~~~~~~~~~--gv~~~~~~~~~~~~~~~~~~l~~~--~~~i~~~~Gi 63 (66)
..+...+++..+.. ++..+++||-+|.--+.+..|+.. -+--|++.|+
T Consensus 84 ~~d~~~~l~~l~~~~d~v~~vllVgH~P~l~~l~~~L~~~~~~~~~fptsgi 135 (163)
T COG2062 84 NGDPGTVLDYLEALGDGVGSVLLVGHNPLLEELALLLAGGARLPVKFPTSGI 135 (163)
T ss_pred CCCHHHHHHHHHHhcccCceEEEECCCccHHHHHHHHccccccccCCCcccE
Confidence 45677666655443 488899999877666666666653 3335555554
No 291
>PRK09230 cytosine deaminase; Provisional
Probab=58.32 E-value=4.8 Score=26.85 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=9.0
Q ss_pred eEeeccCCCC
Q 035377 3 LFDAHCHLQD 12 (66)
Q Consensus 3 ~iDsH~Hl~~ 12 (66)
+||+|+|++.
T Consensus 57 lid~H~H~~~ 66 (426)
T PRK09230 57 FIEPHIHLDT 66 (426)
T ss_pred eeEEEEcccc
Confidence 8999999975
No 292
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=58.26 E-value=9.4 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=19.8
Q ss_pred ceEeeccCCCCCcCCCCHHHHHHHHHhcCCc
Q 035377 2 KLFDAHCHLQDPRIFHKAPQLIATTVNSGVL 32 (66)
Q Consensus 2 ~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~ 32 (66)
+=+|.|+||+. .-..+.+++-+++.++.
T Consensus 3 pK~eLH~HL~G---si~~~~l~ela~~~~~~ 30 (331)
T PF00962_consen 3 PKAELHIHLDG---SISPETLLELAKKNNIC 30 (331)
T ss_dssp -EEEEEEEGGG---SS-HHHHHHHHHHCTCC
T ss_pred CEEEeeeCCcc---CCCHHHHHHHHHhCCCC
Confidence 34899999985 23577788888887764
No 293
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=58.08 E-value=41 Score=20.63 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=24.7
Q ss_pred HHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC--eEee
Q 035377 22 LIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS--VIPC 60 (66)
Q Consensus 22 ~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~--i~~~ 60 (66)
-++++.+.|..++++-+...++ +.+.+++++|+. +..+
T Consensus 92 dv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivs 131 (233)
T cd04723 92 NAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLS 131 (233)
T ss_pred HHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEE
Confidence 3445556788887654445666 777888888864 4444
No 294
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=58.03 E-value=24 Score=23.96 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=28.6
Q ss_pred EeeccCCCCC-cC-------CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377 4 FDAHCHLQDP-RI-------FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 4 iDsH~Hl~~~-~~-------~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
-|-+|||+.. .| ++.+.++.+.+.+++|.-|++|.-... ..-.+|++..|+
T Consensus 259 nd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~~IFAVt~~~~--~~Y~~L~~~i~~ 317 (426)
T PF00362_consen 259 NDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNINPIFAVTKDVY--SIYEELSNLIPG 317 (426)
T ss_dssp --SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEEEEEEEEGGGH--HHHHHHHHHSTT
T ss_pred CCCceEECCCCcccccccccCCCHHHHHHHHHHcCCEEEEEEchhhh--hHHHHHhhcCCC
Confidence 4789999865 22 346888889999999988887764322 222334444443
No 295
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=58.00 E-value=38 Score=20.11 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=7.3
Q ss_pred HHHHHHHHhcCCcEE
Q 035377 20 PQLIATTVNSGVLHF 34 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~ 34 (66)
.+.++.+++.|+.-.
T Consensus 99 ~~~~~~~~~~~~~~g 113 (220)
T PRK05581 99 HRLLQLIKSAGIKAG 113 (220)
T ss_pred HHHHHHHHHcCCEEE
Confidence 344555555555433
No 296
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.89 E-value=8.7 Score=23.05 Aligned_cols=30 Identities=20% Similarity=0.074 Sum_probs=21.0
Q ss_pred cCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377 8 CHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 8 ~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
+||+. |.-++++++.+.++.+=..++++|.
T Consensus 82 vHLTM--YG~~i~dv~~ei~~~~k~~lvvVGa 111 (179)
T COG1303 82 VHLTM--YGLNIDDVIDEIRESKKDVLVVVGA 111 (179)
T ss_pred EEEEe--cCCcchhhhHHHHhcCCcEEEEEcc
Confidence 57765 3346777888888777666888885
No 297
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=57.61 E-value=38 Score=20.08 Aligned_cols=38 Identities=8% Similarity=0.139 Sum_probs=22.5
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccC-hhhHHHHHHHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVS-EEDWNLVKDMS 51 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~-~~~~~~~~~l~ 51 (66)
.++++..+++++.++.|+.-.++.-++ ++-.++++++.
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l 83 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL 83 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc
Confidence 467899999999999999876665454 44444555543
No 298
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=57.39 E-value=47 Score=23.63 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
+.+++++.+++.+|+.++++|.+ .+...+..|++
T Consensus 178 ~~~~~~~~l~~l~Id~LViIGGd-dS~~~A~~Lae 211 (568)
T PLN02251 178 QFKQAEETATKLDLDGLVVIGGD-DSNTNACLLAE 211 (568)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHH
Confidence 56788899999999999999965 44444444444
No 299
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=57.38 E-value=5.2 Score=26.64 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=8.3
Q ss_pred eEeeccCCC
Q 035377 3 LFDAHCHLQ 11 (66)
Q Consensus 3 ~iDsH~Hl~ 11 (66)
|||+|+|+.
T Consensus 61 lVn~H~H~~ 69 (435)
T PRK15493 61 LVNTHTHVV 69 (435)
T ss_pred eeecccCcc
Confidence 899999985
No 300
>PRK14071 6-phosphofructokinase; Provisional
Probab=57.37 E-value=36 Score=22.59 Aligned_cols=35 Identities=9% Similarity=0.201 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
..+++++..++.||+.++++|-+ .++.-+.+|+++
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGd-gS~~~a~~L~~~ 129 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGD-GSLAILRRLAQQ 129 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECCh-hHHHHHHHHHHh
Confidence 35778899999999999999965 666667777764
No 301
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=57.36 E-value=33 Score=19.31 Aligned_cols=54 Identities=19% Similarity=0.037 Sum_probs=27.7
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhc-CCcEEEeeccChhhHHHHHHHHHh-CCCeEeeeeec
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNS-GVLHFAVNGVSEEDWNLVKDMSER-HPSVIPCFGVH 64 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~~~~~~~~~l~~~-~~~i~~~~GiH 64 (66)
+-|+|.... ..+.+++..+.. +++.++..| +.-+.+ +++..++ .+.++...|=|
T Consensus 6 iSD~H~~~~------~~~~~~~~~~~~~~~d~ii~~G-D~~~~~-~~~~l~~~~~~~~~V~GN~ 61 (158)
T TIGR00040 6 ISDTHGPLR------ATELPVELFNLESNVDLVIHAG-DLTSPF-VLKEFEDLAAKVIAVRGNN 61 (158)
T ss_pred EecccCCcc------hhHhHHHHHhhccCCCEEEEcC-CCCCHH-HHHHHHHhCCceEEEccCC
Confidence 457774321 234444444455 788888777 443322 3333333 23466666654
No 302
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=57.27 E-value=18 Score=20.85 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDW 44 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~ 44 (66)
..++..+++++.++.|++-.++.|-+....
T Consensus 128 ~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a 157 (215)
T PF00702_consen 128 LRPGAKEALQELKEAGIKVAILTGDNESTA 157 (215)
T ss_dssp BHTTHHHHHHHHHHTTEEEEEEESSEHHHH
T ss_pred chhhhhhhhhhhhccCcceeeeeccccccc
Confidence 457889999999999997666655444333
No 303
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=57.13 E-value=5.3 Score=27.00 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=8.3
Q ss_pred ceEeeccCCC
Q 035377 2 KLFDAHCHLQ 11 (66)
Q Consensus 2 ~~iDsH~Hl~ 11 (66)
.+||+|+|++
T Consensus 58 GlVdaH~Hl~ 67 (488)
T PRK06151 58 GFIDLDALSD 67 (488)
T ss_pred CEEeeecccc
Confidence 3899999974
No 304
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=56.73 E-value=32 Score=18.85 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCcEEEeecc-----ChhhHHHHHHHHHhCC----CeEeeeeec
Q 035377 21 QLIATTVNSGVLHFAVNGV-----SEEDWNLVKDMSERHP----SVIPCFGVH 64 (66)
Q Consensus 21 ~~~~~~~~~gv~~~~~~~~-----~~~~~~~~~~l~~~~~----~i~~~~GiH 64 (66)
.+++.+.+.+++.++..|- ..++++...++.++.. .++...|-|
T Consensus 26 ~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNH 78 (144)
T cd07400 26 RLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNH 78 (144)
T ss_pred HHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCC
Confidence 3566677788888887773 1234555555555432 366666655
No 305
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=56.70 E-value=42 Score=20.25 Aligned_cols=35 Identities=6% Similarity=0.106 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
..+...++++..++.|+.-.++.+...+..+..++
T Consensus 94 ~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~ 128 (224)
T PRK14988 94 LREDTVPFLEALKASGKRRILLTNAHPHNLAVKLE 128 (224)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHH
Confidence 45678999999999998866655544444444433
No 306
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=56.49 E-value=34 Score=22.05 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
..+.+++.++.|++.+|+++ ....+..-.+|+++.|+|=.-+|=|
T Consensus 196 ~~~~v~~Lr~~gvD~II~Ls-H~g~~~~d~~lA~~v~gIDvIigGH 240 (313)
T cd08162 196 IQPSIDALTAQGINKIILLS-HLQQISIEQALAALLSGVDVIIAGG 240 (313)
T ss_pred HHHHHHHHHHCCCCEEEEEe-cccccchHHHHHhcCCCCCEEEeCC
Confidence 44567777888999887765 3322233456888887654444444
No 307
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=56.44 E-value=43 Score=20.35 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhcCCcEEEee---c-cChhhHHHHHHHHH-hCCCeEeeeeecC
Q 035377 18 KAPQLIATTVNSGVLHFAVN---G-VSEEDWNLVKDMSE-RHPSVIPCFGVHP 65 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~---~-~~~~~~~~~~~l~~-~~~~i~~~~GiHP 65 (66)
.+.++++++.+.|+..+.+. | ..|++..+.++..+ ..|+ ..+|+|.
T Consensus 147 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~H~ 197 (265)
T cd03174 147 YVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD--VPLGLHT 197 (265)
T ss_pred HHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC--CeEEEEe
Confidence 35666777777777665432 2 25666666555433 3444 4566664
No 308
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=56.20 E-value=41 Score=20.06 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=23.5
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccC-hhhHHHHHHHHHhC
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVS-EEDWNLVKDMSERH 54 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~-~~~~~~~~~l~~~~ 54 (66)
+.|.|.|.-. ......++.+.+.|.+.+.+-... .+...++++.++++
T Consensus 57 ~~D~k~~di~----~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~ 105 (215)
T PRK13813 57 IADLKVADIP----NTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAES 105 (215)
T ss_pred EEEeeccccH----HHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhc
Confidence 5688888421 112333355556666644332221 23355556666655
No 309
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=56.15 E-value=7.8 Score=22.67 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC-CCeEeeeee
Q 035377 22 LIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH-PSVIPCFGV 63 (66)
Q Consensus 22 ~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~Gi 63 (66)
++-.|.+.|+..+...|.+.+...+.+.+-..+ +-...++|+
T Consensus 124 l~LaA~~lGlgs~~~~g~d~~~~~~~L~lp~~~~~v~~iavGy 166 (185)
T cd02148 124 FILAARALGLDAGPMSGFDAAAVDAEFFADTRWRSNFVVNIGY 166 (185)
T ss_pred HHHHHHHcCCCcCCCcccCHHHHHHHhCCCCCeEEEEEEEcCC
Confidence 677888999998777677777777666554433 235557775
No 310
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=55.88 E-value=31 Score=19.17 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
..++.+.+++.|.-.++.-|...+..+++.+.+++
T Consensus 57 ~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~ 91 (120)
T PLN03176 57 CNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKE 91 (120)
T ss_pred HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 34566677778876676667777777777776664
No 311
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=55.76 E-value=28 Score=25.74 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=24.1
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDWN 45 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~ 45 (66)
+.+++..+.+++++++||+-+++.|-+.+...
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~ 568 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAE 568 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHH
Confidence 34678999999999999987777665544433
No 312
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=55.52 E-value=42 Score=23.64 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
+.+.+++.+++.||+.++++|.+ .+...+..|++
T Consensus 149 ~~~~~~~~l~~~~Id~LviIGGd-gS~~~A~~Lae 182 (539)
T TIGR02477 149 QFAKALTTAKKLKLDGLVIIGGD-DSNTNAALLAE 182 (539)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHH
Confidence 56778899999999999999964 44444444444
No 313
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=55.43 E-value=45 Score=20.20 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=27.1
Q ss_pred CHHHHHHHHHhcC--CcEEEeeccChhhHHHHHHHHHhC
Q 035377 18 KAPQLIATTVNSG--VLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 18 ~~~~~~~~~~~~g--v~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
+..++++++.+.| +-++.....+.+|..+++++..+.
T Consensus 131 ~l~~~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~ 169 (225)
T cd00502 131 ELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQV 169 (225)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4556778888865 667877777888888887776554
No 314
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=55.41 E-value=39 Score=20.75 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=32.6
Q ss_pred ccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC-CeEeeeee
Q 035377 7 HCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP-SVIPCFGV 63 (66)
Q Consensus 7 H~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~-~i~~~~Gi 63 (66)
|+-|....-.+++.++.++|.+.|+..+ +..+.-...+.++.+..+ .+...+|+
T Consensus 8 ~t~L~p~~t~~~i~~lc~~A~~~~~~av---cv~p~~v~~a~~~l~~~~v~v~tVigF 62 (211)
T TIGR00126 8 HTALKADTTEEDIITLCAQAKTYKFAAV---CVNPSYVPLAKELLKGTEVRICTVVGF 62 (211)
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhCCcEE---EeCHHHHHHHHHHcCCCCCeEEEEeCC
Confidence 3344433334578899999999987654 456666666666554332 35455554
No 315
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=55.37 E-value=40 Score=19.66 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhHHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNL 46 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~ 46 (66)
...++..++++++++.|+.-.++.+........
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~ 107 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGKSGPRARS 107 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHH
Confidence 345788999999999998766665544444433
No 316
>PRK06361 hypothetical protein; Provisional
Probab=55.31 E-value=43 Score=19.93 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHhcCCcEEEee
Q 035377 16 FHKAPQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~ 37 (66)
...+++++++|.+.|++.+...
T Consensus 9 ~~~~~e~v~~A~~~Gl~~i~iT 30 (212)
T PRK06361 9 ELIPSELVRRARVLGYRAIAIT 30 (212)
T ss_pred CCCHHHHHHHHHHcCCCEEEEe
Confidence 4578999999999999987654
No 317
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=55.24 E-value=21 Score=23.18 Aligned_cols=47 Identities=11% Similarity=0.052 Sum_probs=22.3
Q ss_pred CHHHHHHHHHhcCCcE-EEeeccC---------------hhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 18 KAPQLIATTVNSGVLH-FAVNGVS---------------EEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~-~~~~~~~---------------~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
++.++++.+.+.|... +-.+-.+ ++.++++.+.+++. +|.+..|+||
T Consensus 16 ~R~~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~-~V~Fv~aisP 78 (306)
T PF07555_consen 16 DRLDLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKAN-GVDFVYAISP 78 (306)
T ss_dssp HHHHHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHT-T-EEEEEEBG
T ss_pred HHHHHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHc-CCEEEEEECc
Confidence 4566777777777654 3333222 12233334444442 5777788887
No 318
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=55.01 E-value=35 Score=21.78 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
..++++..++.+|+.++++|. -.++..+..|++..
T Consensus 81 ~~~~~~~l~~~~Id~Li~IGG-~gs~~~a~~L~~~~ 115 (282)
T PF00365_consen 81 RKKIVENLKKLGIDALIVIGG-DGSMKGAHKLSEEF 115 (282)
T ss_dssp HHHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCCEEEEecC-CCHHHHHHHHHhcC
Confidence 446788889999999999995 46677777777543
No 319
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=55.00 E-value=55 Score=21.51 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=25.6
Q ss_pred HHHHHHhcCCcEEE-ee-----ccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 22 LIATTVNSGVLHFA-VN-----GVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 22 ~~~~~~~~gv~~~~-~~-----~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
+++.+.+.||+.++ .+ ++..+..+.+..+.+++ ++..++|+|
T Consensus 180 ll~~a~~~GI~diliDplVlpvs~~~~tl~aI~~iK~~~-G~pt~~GlS 227 (308)
T PRK00979 180 MLPLAEEAGIERPLVDTAVTPLPGSGAAIRAIFAVKAKF-GYPVGCAPH 227 (308)
T ss_pred HHHHHHHcCCCcEEeccCCCcCccHHHHHHHHHHHHHHc-CCCeEEEEe
Confidence 67778999998754 32 22233344444445556 577788876
No 320
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=54.91 E-value=45 Score=20.13 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEe-eeeec
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIP-CFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~-~~GiH 64 (66)
....++..++.|++.+.+++. ...-+.+..+.++||++.. +..+.
T Consensus 138 l~~ai~~L~~~G~~~I~v~~l-l~~~~gl~~l~~~~p~v~i~~~~id 183 (207)
T TIGR01091 138 MIAALDLLKKRGAKKIKVLSI-VAAPEGIEAVEKAHPDVDIYTAAID 183 (207)
T ss_pred HHHHHHHHHHcCCCEEEEEEE-ecCHHHHHHHHHHCCCCEEEEEEEC
Confidence 667778888899988665543 4444556678889998443 44443
No 321
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=54.61 E-value=3.9 Score=27.09 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=9.1
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.|||+|+|+..
T Consensus 43 GfVn~H~Hl~~ 53 (418)
T cd01313 43 GMPNLHSHAFQ 53 (418)
T ss_pred CccccCccHHH
Confidence 38999999974
No 322
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=54.61 E-value=65 Score=21.83 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccCh--------hhHHHHHHHHHhCC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSE--------EDWNLVKDMSERHP 55 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~--------~~~~~~~~l~~~~~ 55 (66)
..++++++.+.|++.+++++... +..+++.++++++.
T Consensus 77 ~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~g 121 (447)
T TIGR02717 77 VPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYG 121 (447)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcC
Confidence 67889999999999987765322 22467788888763
No 323
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=54.47 E-value=50 Score=20.48 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChh--hHHHHHHHHHhC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEE--DWNLVKDMSERH 54 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~--~~~~~~~l~~~~ 54 (66)
.+.+++.+.+.+.|.+.+++=|++-- ..++.+++.++.
T Consensus 12 ~~~~~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~ 51 (219)
T cd02812 12 LVDEEIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRI 51 (219)
T ss_pred CCHHHHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHh
Confidence 45566777777799998887666523 555565655544
No 324
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=54.40 E-value=48 Score=23.80 Aligned_cols=34 Identities=9% Similarity=0.019 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
+.+++++.+++.+|+.++++|.+ .+...+..|++
T Consensus 161 ~~~~i~e~l~~l~Id~LvvIGGd-dS~~~A~~Lae 194 (610)
T PLN03028 161 QVNAALAACEALKLDGLVIIGGV-TSNTDAAQLAE 194 (610)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHH
Confidence 56788899999999999999964 44444444444
No 325
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=54.33 E-value=21 Score=21.04 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEED 43 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~ 43 (66)
++.++.+|++.|++.+.+.++...+
T Consensus 87 l~~~~~~Ar~~gi~~lf~LTt~~~~ 111 (153)
T COG1246 87 LERLLADARELGIKELFVLTTRSPE 111 (153)
T ss_pred HHHHHHHHHHcCCceeeeeecccHH
Confidence 5677889999999998888754443
No 326
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=54.33 E-value=13 Score=17.45 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCcEEE
Q 035377 19 APQLIATTVNSGVLHFA 35 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~ 35 (66)
..+.+++|++-||++++
T Consensus 28 ~~~~v~~a~~GGIErVL 44 (45)
T PF11880_consen 28 QQDYVERANNGGIERVL 44 (45)
T ss_pred HHHHHHHHHcCCeeeec
Confidence 56788999999999875
No 327
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=54.28 E-value=22 Score=22.14 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCcEE
Q 035377 19 APQLIATTVNSGVLHF 34 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~ 34 (66)
+..+++.|++.||+.+
T Consensus 48 l~al~~~a~~~gv~~V 63 (223)
T PF06415_consen 48 LFALIKLAKKQGVKKV 63 (223)
T ss_dssp HHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHcCCCEE
Confidence 6778888888888765
No 328
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=54.24 E-value=44 Score=19.79 Aligned_cols=36 Identities=8% Similarity=0.009 Sum_probs=24.5
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKD 49 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~ 49 (66)
.+.+...++++..++.|+.-.++.+. ..+..+..++
T Consensus 45 ~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 45 TLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred EEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 34577899999999999887766555 3443344433
No 329
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=54.19 E-value=29 Score=18.74 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHhcCCcEEEe
Q 035377 16 FHKAPQLIATTVNSGVLHFAV 36 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~ 36 (66)
.+++++.++++.+.|++++++
T Consensus 41 ~P~i~~~l~~l~~~G~~~i~l 61 (103)
T cd03413 41 YPGLDDVLAKLKKAGIKKVTL 61 (103)
T ss_pred CCCHHHHHHHHHHcCCCEEEE
Confidence 467999999999999998664
No 330
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=53.90 E-value=38 Score=18.92 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
.+++.+..++.|+..+..+-=+..|++.+++++.+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~ 83 (123)
T PF04263_consen 48 SPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQ 83 (123)
T ss_dssp -HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHT
T ss_pred ChHHHHHHHhhccceecccccccCHHHHHHHHHHHC
Confidence 345666666667665555544566677777766554
No 331
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=53.82 E-value=35 Score=20.53 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=24.0
Q ss_pred CHHHHHHHHHhcCCc-EEEeeccChhhHHHHHHHHHh
Q 035377 18 KAPQLIATTVNSGVL-HFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~-~~~~~~~~~~~~~~~~~l~~~ 53 (66)
++.+++++++++||. .++.+|...+.-+++..+.+.
T Consensus 124 ~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~ 160 (187)
T cd01452 124 DLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDA 160 (187)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHH
Confidence 455677888888887 466777665555555555554
No 332
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=53.81 E-value=55 Score=23.17 Aligned_cols=34 Identities=15% Similarity=0.016 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
+.+.+++.+++.+|..++++|.+ .+...+..|++
T Consensus 154 ~~~~i~~~l~~~~Id~LviIGGd-dS~~~A~~Lae 187 (550)
T cd00765 154 QFKQAEETAKKLDLDALVVIGGD-DSNTNAALLAE 187 (550)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHH
Confidence 46788888999999999999964 44444444444
No 333
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=53.75 E-value=51 Score=20.85 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=23.7
Q ss_pred HHHHHHHHHh-cCCcEEEeeccC-------hhhHHHHHHHHH
Q 035377 19 APQLIATTVN-SGVLHFAVNGVS-------EEDWNLVKDMSE 52 (66)
Q Consensus 19 ~~~~~~~~~~-~gv~~~~~~~~~-------~~~~~~~~~l~~ 52 (66)
..++++...+ .||.++++.|++ .++..++++.+.
T Consensus 26 ~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~ 67 (293)
T PRK04147 26 LRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVA 67 (293)
T ss_pred HHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHH
Confidence 6678888888 999999888863 344555555433
No 334
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.68 E-value=52 Score=20.42 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=26.2
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHH----HHhCCCeEeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDM----SERHPSVIPCFG 62 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l----~~~~~~i~~~~G 62 (66)
+..++.+.+.+.|++.+=++-.++...+.+.+| .+++|++...+|
T Consensus 28 ~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG 76 (222)
T PRK07114 28 VAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG 76 (222)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE
Confidence 345667777888988553333343444444444 356787766665
No 335
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=53.44 E-value=57 Score=20.80 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHH-HHHHhCCCe
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVK-DMSERHPSV 57 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~-~l~~~~~~i 57 (66)
.+.++++|.+.| .++...|..++-.+++. .+.++||++
T Consensus 97 ~~~Ll~~a~~~~-~~vfllGgkp~V~~~a~~~l~~~~p~l 135 (253)
T COG1922 97 VEALLKRAAEEG-KRVFLLGGKPGVAEQAAAKLRAKYPGL 135 (253)
T ss_pred HHHHHHHhCccC-ceEEEecCCHHHHHHHHHHHHHHCCCc
Confidence 566777777765 45777888888877755 466778863
No 336
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=53.14 E-value=50 Score=20.35 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377 21 QLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 21 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
+-++++.+.|+.++++-+..+++.+.+.+++++++.
T Consensus 88 edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~ 123 (241)
T PRK14024 88 ESLEAALATGCARVNIGTAALENPEWCARVIAEHGD 123 (241)
T ss_pred HHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhh
Confidence 345566667888875433445666777777777753
No 337
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=53.07 E-value=84 Score=22.66 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=34.6
Q ss_pred eEeeccCCCCCcCC--------CCHHHHHHHHHhcCCcEEEeeccC--------hhhHHHHHHHHHhC
Q 035377 3 LFDAHCHLQDPRIF--------HKAPQLIATTVNSGVLHFAVNGVS--------EEDWNLVKDMSERH 54 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~--------~~~~~~~~~~~~~gv~~~~~~~~~--------~~~~~~~~~l~~~~ 54 (66)
+|-|-+|+...+-+ ..++++++-|++..|+.++. |.+ .+...+++++.++|
T Consensus 17 LVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLl-GGDLFHeNkPSr~~L~~~i~lLRry 83 (646)
T KOG2310|consen 17 LVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILL-GGDLFHENKPSRKTLHRCLELLRRY 83 (646)
T ss_pred EEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEe-cCcccccCCccHHHHHHHHHHHHHH
Confidence 56677888642211 23889999999999997655 544 24456777777765
No 338
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=53.06 E-value=34 Score=24.72 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhh
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEED 43 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~ 43 (66)
+.+++..+.++++++.||+-+++.|-++..
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T 470 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELT 470 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHH
Confidence 346788899999999999887777755443
No 339
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=53.03 E-value=33 Score=24.86 Aligned_cols=31 Identities=19% Similarity=0.004 Sum_probs=23.9
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDW 44 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~ 44 (66)
+..++..+.+++++++||+-.++.|-++...
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA 472 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIA 472 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 4467889999999999998777777555433
No 340
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=52.87 E-value=45 Score=23.60 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
+.+.+++.+++.+|+.++++|.+ .++..+..|++
T Consensus 152 ~~~~i~~~l~~~~Id~LviIGGd-~S~~~A~~Lae 185 (555)
T PRK07085 152 QKEACLETVKKLKLDGLVIIGGD-DSNTNAAILAE 185 (555)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHH
Confidence 57788899999999999999964 44444444444
No 341
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=52.68 E-value=45 Score=20.54 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC-CeEeeeee
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP-SVIPCFGV 63 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~-~i~~~~Gi 63 (66)
.+++.++.++|.+.|+..+ ++.|.-...+.++.+..+ .+-..+|+
T Consensus 21 ~~~i~~~~~~A~~~~~~av---cv~p~~v~~a~~~l~~~~v~v~tVigF 66 (221)
T PRK00507 21 EEDIDKLCDEAKEYGFASV---CVNPSYVKLAAELLKGSDVKVCTVIGF 66 (221)
T ss_pred HHHHHHHHHHHHHhCCeEE---EECHHHHHHHHHHhCCCCCeEEEEecc
Confidence 3578889999999887644 456666666666554433 35555554
No 342
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=52.66 E-value=49 Score=20.23 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChh------hHHHHHHHHHhCCC-eEeeeee
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEE------DWNLVKDMSERHPS-VIPCFGV 63 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~------~~~~~~~l~~~~~~-i~~~~Gi 63 (66)
-++.++++++.+.|+..+++...+.+ +++.+.++++..+. +..+=|+
T Consensus 147 ~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv 200 (229)
T PF00977_consen 147 IDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGV 200 (229)
T ss_dssp EEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS-
T ss_pred cCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCC
Confidence 36889999999999999887654322 34445555555432 4444443
No 343
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=52.50 E-value=47 Score=21.54 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCcEEE
Q 035377 19 APQLIATTVNSGVLHFA 35 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~ 35 (66)
+..++++|++.|+-++-
T Consensus 46 VsRlL~~Ar~~GiV~I~ 62 (318)
T PRK15418 46 VSRLLEKGRQSGIIRVQ 62 (318)
T ss_pred HHHHHHHHHHcCcEEEE
Confidence 44555666666655443
No 344
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.34 E-value=11 Score=26.26 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=10.3
Q ss_pred ceEeeccCCCCCc
Q 035377 2 KLFDAHCHLQDPR 14 (66)
Q Consensus 2 ~~iDsH~Hl~~~~ 14 (66)
.|||.|+|.|...
T Consensus 62 GFIDvHtHyD~~~ 74 (579)
T COG3653 62 GFIDVHTHYDAEV 74 (579)
T ss_pred cEEEeeeccccee
Confidence 4899999988543
No 345
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=52.32 E-value=6.5 Score=26.13 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=8.2
Q ss_pred eEeeccCCC
Q 035377 3 LFDAHCHLQ 11 (66)
Q Consensus 3 ~iDsH~Hl~ 11 (66)
+||+|+|+.
T Consensus 61 fID~H~H~~ 69 (442)
T PRK07203 61 LINSHNHIY 69 (442)
T ss_pred eeeccccch
Confidence 899999986
No 346
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=52.12 E-value=35 Score=25.17 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=23.8
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDW 44 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~ 44 (66)
+.+++..+.+++++++||+-+++.|-++...
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA 545 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVT 545 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 3457889999999999999777777554443
No 347
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=52.02 E-value=23 Score=22.43 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=17.2
Q ss_pred ChhhHHHHHHHHHhCCCeEeeeeecCC
Q 035377 40 SEEDWNLVKDMSERHPSVIPCFGVHPW 66 (66)
Q Consensus 40 ~~~~~~~~~~l~~~~~~i~~~~GiHP~ 66 (66)
++....+..+|++++. ..+|-||.
T Consensus 40 Dp~~M~~tv~lA~~~g---V~iGAHPs 63 (242)
T PF03746_consen 40 DPETMRRTVRLAKEHG---VAIGAHPS 63 (242)
T ss_dssp -HHHHHHHHHHHHHTT----EEEEE--
T ss_pred CHHHHHHHHHHHHHcC---CEeccCCC
Confidence 7888889999999985 56788883
No 348
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=51.97 E-value=40 Score=19.68 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=27.0
Q ss_pred CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHH
Q 035377 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDM 50 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l 50 (66)
|.=|+.+ ||+......-.-.+++++...|-+ +++.+.+.+..+.+-++
T Consensus 1 ~~~v~FY-hL~~~~~~~~acrL~~Ka~~~G~r-v~I~~~d~~~~~~LD~~ 48 (154)
T PRK06646 1 MQQFSIY-QTSDELLLKSILLLIEKCYYSDLK-SVILTADADQQEMLNKN 48 (154)
T ss_pred CCeeEEE-EeCCChHHHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHH
Confidence 3334444 554433223355788999999855 55556566655544443
No 349
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=51.94 E-value=41 Score=18.67 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
.+++++++...|..++++-..+.+++.++.+.++.
T Consensus 37 ~~~~~~~W~~~g~~KvVl~v~~~~~l~~l~~~a~~ 71 (115)
T cd02407 37 PPTLLRAWELEGQKKVVLKVPSEEELLELAKKAKE 71 (115)
T ss_pred CHHHHHHHHhCCCcEEEEECCCHHHHHHHHHHHHH
Confidence 35678889999999988777777888888777654
No 350
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=51.86 E-value=35 Score=21.51 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCHHHHHHH----HHhcCCcEEEeeccChhhHH
Q 035377 17 HKAPQLIAT----TVNSGVLHFAVNGVSEEDWN 45 (66)
Q Consensus 17 ~~~~~~~~~----~~~~gv~~~~~~~~~~~~~~ 45 (66)
.+.++++.+ +.++|+.-++|+|-+.++.+
T Consensus 102 ~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~ 134 (250)
T PRK00042 102 GETDELVNKKVKAALKAGLTPILCVGETLEERE 134 (250)
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHH
Confidence 455677776 99999999999997766543
No 351
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=51.85 E-value=55 Score=20.83 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccC---hhhHHHHHHHHHhCC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVS---EEDWNLVKDMSERHP 55 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~---~~~~~~~~~l~~~~~ 55 (66)
..+.+.+++..+.|++.+++-.+. =++++++.+..+++.
T Consensus 58 ~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~ 99 (262)
T PF06180_consen 58 DSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYK 99 (262)
T ss_dssp --HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhh
Confidence 468899999999999998776653 367888888777764
No 352
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=51.83 E-value=56 Score=20.74 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcC-CcEEEeecc-------ChhhHHHHHHHHH
Q 035377 19 APQLIATTVNSG-VLHFAVNGV-------SEEDWNLVKDMSE 52 (66)
Q Consensus 19 ~~~~~~~~~~~g-v~~~~~~~~-------~~~~~~~~~~l~~ 52 (66)
..++++...+.| +.++++.|+ +.++..++++.+.
T Consensus 23 ~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~ 64 (290)
T TIGR00683 23 LRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAK 64 (290)
T ss_pred HHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHH
Confidence 566777888899 999888776 3455556655443
No 353
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=51.80 E-value=27 Score=20.44 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=18.6
Q ss_pred cChhhHHHHHHHHHhCC--CeEeeee
Q 035377 39 VSEEDWNLVKDMSERHP--SVIPCFG 62 (66)
Q Consensus 39 ~~~~~~~~~~~l~~~~~--~i~~~~G 62 (66)
+++++-+++.+++++|. |+..-+|
T Consensus 49 MDLEnQ~rvk~~aEk~g~enlvVvlG 74 (150)
T PF04723_consen 49 MDLENQQRVKDLAEKYGAENLVVVLG 74 (150)
T ss_pred ccHHHHHHHHHHHHhcCCccEEEEec
Confidence 37899999999999985 4655554
No 354
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=51.77 E-value=60 Score=20.57 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC-CeEe
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP-SVIP 59 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~-~i~~ 59 (66)
++.+++++.+++.|+..+..++.+ ..-+++..+++.-. .||.
T Consensus 131 ee~~~~~~~~~~~gi~~I~lv~Pt-T~~eri~~i~~~a~gFIY~ 173 (263)
T CHL00200 131 EESDYLISVCNLYNIELILLIAPT-SSKSRIQKIARAAPGCIYL 173 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHHhCCCcEEE
Confidence 467889999999999976665532 12334555555544 4553
No 355
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=51.75 E-value=39 Score=25.09 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=24.3
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDWN 45 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~ 45 (66)
+..++..+.+++++++||+-+++.|-++....
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~ 610 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAK 610 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHH
Confidence 44678999999999999987777775554443
No 356
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=51.61 E-value=32 Score=22.43 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
+++.+.+++.|+-.++.=|...+-.+++.+++++
T Consensus 45 ~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~ 78 (345)
T PLN02750 45 SKIGEACKKWGFFQVINHGVPSELRQRVEKVAKE 78 (345)
T ss_pred HHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5666778888987777778877777777776665
No 357
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.53 E-value=60 Score=20.49 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC-eEe
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS-VIP 59 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~-i~~ 59 (66)
++.+++++++++.|+..+..++.+. .-+++..+++..++ ||.
T Consensus 129 ee~~~~~~~~~~~gl~~I~lvap~t-~~eri~~i~~~s~gfIY~ 171 (258)
T PRK13111 129 EEAEELRAAAKKHGLDLIFLVAPTT-TDERLKKIASHASGFVYY 171 (258)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHhCCCcEEE
Confidence 4567889999999999876554332 23344445554444 654
No 358
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=51.52 E-value=41 Score=24.35 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhh
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEED 43 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~ 43 (66)
..+++..+.++++++.||+-+++.|-++..
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T 474 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLT 474 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHH
Confidence 346788999999999999877777755443
No 359
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=51.38 E-value=23 Score=22.32 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=22.7
Q ss_pred CHHHHHHHHHhcCCcEEEe--eccChhhHHHHHHHHHhC
Q 035377 18 KAPQLIATTVNSGVLHFAV--NGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~--~~~~~~~~~~~~~l~~~~ 54 (66)
+.+.+.+++++.|+.-+.+ +++.-+..+.+.+.++.|
T Consensus 136 Ea~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsF 174 (268)
T KOG4175|consen 136 EAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSF 174 (268)
T ss_pred HHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcce
Confidence 4566778999999986444 344444455555555543
No 360
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=51.31 E-value=30 Score=22.40 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=21.0
Q ss_pred CcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377 13 PRIFHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 13 ~~~~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
+++.++.++.+++..+.|+++++++..
T Consensus 237 ~WL~P~~~~~l~~l~~~G~~~V~v~p~ 263 (316)
T PF00762_consen 237 EWLGPSTEDVLEELAKEGVKRVVVVPP 263 (316)
T ss_dssp -BSSSBHHHHHHHHHHCT-SEEEEEET
T ss_pred CCccccHHHHHHHHHhcCCCeEEEECC
Confidence 556778999999999999999776654
No 361
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=51.25 E-value=49 Score=19.40 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWN 45 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~ 45 (66)
..+...+++++.++.|+.-.++.+...+...
T Consensus 95 ~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~ 125 (221)
T TIGR02253 95 VYPGVRDTLMELRESGYRLGIITDGLPVKQW 125 (221)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEeCCchHHHH
Confidence 4567899999999999875555444433333
No 362
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=51.17 E-value=70 Score=21.19 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=18.6
Q ss_pred CHHHHHHHHHhcCCcEEEeecc
Q 035377 18 KAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
.+.+.++++.+.||..+++-|.
T Consensus 55 ~l~~~v~~~~~~Gi~~v~lFgv 76 (320)
T cd04823 55 ELLKEAEEAVDLGIPAVALFPV 76 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEecC
Confidence 4667778889999999998887
No 363
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=51.05 E-value=23 Score=24.85 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
+.+-++.|.++||+.++.+|.+.+|-+ +++.+.++.
T Consensus 463 F~D~ve~aa~aGi~aIiQPGGSiRD~e-vI~aa~e~g 498 (511)
T TIGR00355 463 FRDGVEEAAAAGITCIIQPGGSMRDED-SIWAADEHG 498 (511)
T ss_pred CCccHHHHHHcCCEEEEcCCCCCCcHH-HHHHHHHhC
Confidence 445678888999999999999888865 466677775
No 364
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=50.98 E-value=73 Score=21.36 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhcCCcEE-Eeec-cC---hhhHHHHHHHHHhCCC-eEeee
Q 035377 17 HKAPQLIATTVNSGVLHF-AVNG-VS---EEDWNLVKDMSERHPS-VIPCF 61 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~-~~~~-~~---~~~~~~~~~l~~~~~~-i~~~~ 61 (66)
.|.++-++.|++.||+++ +.+| .+ .+....+.+.|++... +|.++
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEe
Confidence 467778899999999984 4455 22 3345556666776553 55544
No 365
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=50.82 E-value=33 Score=18.13 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=19.6
Q ss_pred eEeeccCCC--CCcCCCCHHHHHHHHHhcC
Q 035377 3 LFDAHCHLQ--DPRIFHKAPQLIATTVNSG 30 (66)
Q Consensus 3 ~iDsH~Hl~--~~~~~~~~~~~~~~~~~~g 30 (66)
++++||+=- +..-..|+++++.+.....
T Consensus 13 Vv~n~c~~kL~~~~~~~D~~~i~r~f~Tpd 42 (83)
T PF10623_consen 13 VVSNHCERKLFDTKPDNDPDKIARRFCTPD 42 (83)
T ss_pred EEeCCcceeEeecCCCCCHHHHHhhccCcC
Confidence 689999843 2233568999998887654
No 366
>COG4022 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.74 E-value=65 Score=20.69 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
.-+=+++|.+.|-+++.+.-.++++.+++.++-...=+ ...+|+|
T Consensus 156 q~~GVkkA~ElgykkvAVTvada~~Ak~lR~le~~~l~-llv~aVH 200 (286)
T COG4022 156 QVEGVKKAAELGYKKVAVTVADAETAKRLRKLEADELD-LLVIAVH 200 (286)
T ss_pred hhhhHHHHHHcCcceEEEEecCHHHHHHHHHhhcCcce-EEEEEEE
Confidence 33445677777877776666788888887776544312 2345555
No 367
>PRK14057 epimerase; Provisional
Probab=50.70 E-value=64 Score=20.56 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=9.2
Q ss_pred CHHHHHHHHHhcCCcE
Q 035377 18 KAPQLIATTVNSGVLH 33 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~ 33 (66)
+++..+++..++|.+.
T Consensus 86 ~P~~~i~~~~~aGad~ 101 (254)
T PRK14057 86 DQWTAAQACVKAGAHC 101 (254)
T ss_pred CHHHHHHHHHHhCCCE
Confidence 4555666666666553
No 368
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=50.70 E-value=54 Score=19.70 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCcEEEeeccC---h--hhHHHHHHHHHhCCCeEeeeeec
Q 035377 21 QLIATTVNSGVLHFAVNGVS---E--EDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 21 ~~~~~~~~~gv~~~~~~~~~---~--~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
+.++++.++|++.++..+.. + ++..++++.+++++++...++++
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~ 127 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS 127 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC
Confidence 45677888888844433321 2 45566666666534444444444
No 369
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=50.53 E-value=43 Score=18.61 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
.++++++...|..++++-..+.+++..+.+.+++
T Consensus 38 ~~~~~~W~~~G~~KVvlk~~~~~el~~l~~~a~~ 71 (115)
T TIGR00283 38 PSLRRKWLDEGQKKVVLKVNSLEELLEIYHKAES 71 (115)
T ss_pred HHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 5677888889998888777788888887777665
No 370
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=50.45 E-value=53 Score=19.62 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=11.3
Q ss_pred HHHHHHhcCCcEEEeecc
Q 035377 22 LIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 22 ~~~~~~~~gv~~~~~~~~ 39 (66)
.++.+.+.|.+++++.+.
T Consensus 86 ~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 86 QIYEARAAGADAVLLIVA 103 (217)
T ss_pred HHHHHHHcCCCEEEEeec
Confidence 566677777776655443
No 371
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=50.35 E-value=61 Score=20.47 Aligned_cols=24 Identities=4% Similarity=-0.104 Sum_probs=17.2
Q ss_pred CHHHHHHHHHhcCCcEEEeeccCh
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSE 41 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~ 41 (66)
.++..+..+.+.||+.+++++.++
T Consensus 86 ~l~~~L~~~~~~Gi~niL~l~GD~ 109 (287)
T PF02219_consen 86 ALQSDLLGAHALGIRNILALTGDP 109 (287)
T ss_dssp HHHHHHHHHHHTT--EEEEESS-T
T ss_pred HHHHHHHHHHHcCCCeEEEecCCC
Confidence 567778889999999998887764
No 372
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=50.35 E-value=50 Score=19.21 Aligned_cols=34 Identities=9% Similarity=-0.029 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVK 48 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~ 48 (66)
+.+...++++.+++.|+.-.++.+......+..+
T Consensus 86 ~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l 119 (213)
T TIGR01449 86 VFPGVEATLGALRAKGLRLGLVTNKPTPLARPLL 119 (213)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence 4567889999999999876655554444444433
No 373
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=50.30 E-value=63 Score=20.38 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=23.7
Q ss_pred HHHHHHHHHhc-CCcEEEeecc-------ChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNS-GVLHFAVNGV-------SEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~-gv~~~~~~~~-------~~~~~~~~~~l~~~ 53 (66)
..++++...+. |+.++++.|+ +.++..++++.+.+
T Consensus 23 ~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~ 65 (288)
T cd00954 23 LRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAE 65 (288)
T ss_pred HHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHH
Confidence 56777888888 9999888776 34455555554443
No 374
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=50.21 E-value=38 Score=22.41 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
.++.+.|++.|+-.+..-+.+....+++.++++++
T Consensus 27 ~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqF 61 (322)
T COG3491 27 QELRAACREIGFFYLVNHGIDAALIDEAFALARQF 61 (322)
T ss_pred HHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45566777888877777777888888888888875
No 375
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=50.16 E-value=53 Score=19.54 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=30.3
Q ss_pred CHHHHHHHHHhc--CCcEEEeecc-----ChhhHHHHHHHHHhCCC-eEeeeeec
Q 035377 18 KAPQLIATTVNS--GVLHFAVNGV-----SEEDWNLVKDMSERHPS-VIPCFGVH 64 (66)
Q Consensus 18 ~~~~~~~~~~~~--gv~~~~~~~~-----~~~~~~~~~~l~~~~~~-i~~~~GiH 64 (66)
.++++++.+.+. +++.++..|- ..++++.+.++.++.+- ++...|=|
T Consensus 26 ~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNH 80 (240)
T cd07402 26 SLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNH 80 (240)
T ss_pred HHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 356677777776 7887777663 24456666666655532 67777766
No 376
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=50.16 E-value=65 Score=20.54 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhcCCc--EEEeeccChhhHHHHHHHHHhCCC-eEeeeeecC
Q 035377 17 HKAPQLIATTVNSGVL--HFAVNGVSEEDWNLVKDMSERHPS-VIPCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~--~~~~~~~~~~~~~~~~~l~~~~~~-i~~~~GiHP 65 (66)
.+..-+.++..+.|+. ...+||-++++..+.++.+.+..+ |+.+=|+=|
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGP 72 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGP 72 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 3566677888888985 577889999998888877666555 777777766
No 377
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=50.11 E-value=61 Score=20.19 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccCh------hhHHHHHHHHHhCC-CeEeeeee
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSE------EDWNLVKDMSERHP-SVIPCFGV 63 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~------~~~~~~~~l~~~~~-~i~~~~Gi 63 (66)
-++.++++++.+.|+..+++...+. -+++.+.++++..+ .+..+=|+
T Consensus 144 ~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv 197 (241)
T PRK14114 144 IDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGI 197 (241)
T ss_pred CCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCC
Confidence 3688999999999999888764332 24555555555433 25555443
No 378
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=50.06 E-value=60 Score=20.61 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccCh---hhHHHHHHHHHhCCC--eEeeeeecC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSE---EDWNLVKDMSERHPS--VIPCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~---~~~~~~~~l~~~~~~--i~~~~GiHP 65 (66)
.|..+-++...+.|+++++..|... +..+.+.+|.+..++ |.+.-|+-|
T Consensus 128 ~d~~~al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~ 181 (248)
T PRK11572 128 ANPLNALKQLADLGVARILTSGQQQDAEQGLSLIMELIAASDGPIIMAGAGVRL 181 (248)
T ss_pred CCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCH
Confidence 4677888888899999999877543 334556666665554 566666543
No 379
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=49.87 E-value=63 Score=20.77 Aligned_cols=37 Identities=11% Similarity=0.259 Sum_probs=29.5
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
...++++...+.| ..++.+|.. ++.+.+.++.+.+++
T Consensus 196 ~~~~l~~~l~~~~-~~Vvl~g~~-~e~e~~~~i~~~~~~ 232 (334)
T COG0859 196 HYAELAELLIAKG-YQVVLFGGP-DEEERAEEIAKGLPN 232 (334)
T ss_pred HHHHHHHHHHHCC-CEEEEecCh-HHHHHHHHHHHhcCC
Confidence 4678888888888 667777765 888888888888775
No 380
>PRK12435 ferrochelatase; Provisional
Probab=49.73 E-value=14 Score=23.91 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=20.6
Q ss_pred CcCCCCHHHHHHHHHhc-CCcEEEeecc
Q 035377 13 PRIFHKAPQLIATTVNS-GVLHFAVNGV 39 (66)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-gv~~~~~~~~ 39 (66)
+++.++.++.+++..+. |+++++++..
T Consensus 228 ~WL~P~t~d~l~~l~~~~G~k~v~vvpi 255 (311)
T PRK12435 228 PWLGPDVQDLTRDLYEEHGYKSFIYTPV 255 (311)
T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEECC
Confidence 45667899999888776 9998776653
No 381
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=49.64 E-value=32 Score=18.91 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDW 44 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~ 44 (66)
+.+...++++++++.|+.-.++.+.+.+++
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~ 59 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHV 59 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHH
Confidence 345788999999999987666555523433
No 382
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=49.58 E-value=58 Score=19.75 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCcEEEeeccC---hhhH-HHHHHHHHhCC-CeEeeeeec
Q 035377 19 APQLIATTVNSGVLHFAVNGVS---EEDW-NLVKDMSERHP-SVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~---~~~~-~~~~~l~~~~~-~i~~~~GiH 64 (66)
++.+++.+.+.+++.+++.|-- .+.. +....+.+..+ .++...|-|
T Consensus 21 l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNH 71 (239)
T TIGR03729 21 LETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNH 71 (239)
T ss_pred HHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCC
Confidence 4567777877888888776631 1112 22233333222 377777876
No 383
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=49.51 E-value=12 Score=23.86 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=8.7
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
+-+|.|+||+.
T Consensus 2 PK~eLH~Hl~G 12 (305)
T cd00443 2 PKVELHAHLSG 12 (305)
T ss_pred CceeEEecCcC
Confidence 45799999974
No 384
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=49.41 E-value=62 Score=21.02 Aligned_cols=49 Identities=6% Similarity=-0.009 Sum_probs=28.8
Q ss_pred EeeccCCCC---CcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 4 FDAHCHLQD---PRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 4 iDsH~Hl~~---~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
+..|+|.-. +..++-+.++|++|++. |.-++.+-|+.+-+..+++.+.+
T Consensus 121 ~~vy~qPp~~~~p~IKE~vR~~I~~A~kV-IAIVMD~FTD~dIf~DLleAa~k 172 (284)
T PF07894_consen 121 ATVYFQPPKDGQPHIKEVVRRMIQQAQKV-IAIVMDVFTDVDIFCDLLEAANK 172 (284)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHhcce-eEEEeeccccHHHHHHHHHHHHh
Confidence 466777622 12222344445555543 34455677899999999988844
No 385
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=49.24 E-value=58 Score=19.85 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
.+...+.++++++.|+.-+++.|-.+.+....++
T Consensus 22 ~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~ 55 (264)
T COG0561 22 SPETKEALARLREKGVKVVLATGRPLPDVLSILE 55 (264)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHH
Confidence 3456788889999999988887766655444443
No 386
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=49.24 E-value=42 Score=19.94 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
..+.++++.+.|++++++..++.+.....++-++..
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~ 79 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA 79 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc
Confidence 345677777788888887777776666666655543
No 387
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=49.19 E-value=62 Score=19.98 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=20.2
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeec
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
+-|+|..+ ..++.+++.+++.+++.+++.|
T Consensus 10 iSDiHgn~------~~le~l~~~~~~~~~D~vv~~G 39 (224)
T cd07388 10 TSNPKGDL------EALEKLVGLAPETGADAIVLIG 39 (224)
T ss_pred EEecCCCH------HHHHHHHHHHhhcCCCEEEECC
Confidence 45777432 2366777777778888887766
No 388
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=49.12 E-value=12 Score=19.60 Aligned_cols=50 Identities=26% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccC-------hhhHHHHHH-HHHhCCC----eEeeeeecCC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVS-------EEDWNLVKD-MSERHPS----VIPCFGVHPW 66 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~-------~~~~~~~~~-l~~~~~~----i~~~~GiHP~ 66 (66)
+++.+.++++.+.|.++++++=.- .+|..+.++ +..++|+ +-..+|.||.
T Consensus 37 P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h~~~DIp~~l~~~~~~~~~~~v~~~~pLG~~p~ 98 (105)
T PF01903_consen 37 PSLEEALERLVAQGARRIVVVPYFLFPGYHVKRDIPEALAEARERHPGIEVRVAPPLGPHPL 98 (105)
T ss_dssp SCCHHCCHHHHCCTCSEEEEEEESSSSSHHHHCHHHHHHCHHHHCSTTEEEEE---GGGSCC
T ss_pred CCHHHHHHHHHHcCCCeEEEEeeeecCccchHhHHHHHHHHHHhhCCceEEEECCCCCCCHH
Confidence 578888999989999997766321 233555454 4445773 3347787773
No 389
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=33 Score=20.49 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=18.8
Q ss_pred CHHHHHHHHHhcCCcEEEeeccC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
...++..+.++.||+.|++++++
T Consensus 60 gY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 60 GYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cHHHHHHHHHHcCCceEEEEEeC
Confidence 45677778889999999999876
No 390
>cd02149 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.
Probab=48.96 E-value=22 Score=20.12 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH-hC-CCeEeeeee
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE-RH-PSVIPCFGV 63 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~-~~-~~i~~~~Gi 63 (66)
..+.-.|.+.|+..+..-+.+.+...+.+.+-. .+ +-...++|.
T Consensus 95 ~~l~LaA~~lGlgs~~i~~~~~~~v~~~l~l~~~~~~~~~~i~iGy 140 (157)
T cd02149 95 GNMLLAAASLGIDSCPIEGFDPAKLDEILGLDEKGYGSSVMVALGY 140 (157)
T ss_pred HHHHHHHHHcCCCcCcccCcCHHHHHHHhCCCcccCceEEEEEeec
Confidence 345567788898877665656555666666643 33 445567774
No 391
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=48.92 E-value=59 Score=19.70 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
..+...+++++.++.|+.-.++.+...+..+..++
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~ 134 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAP 134 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHH
Confidence 34678899999999998876666655554555444
No 392
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=48.91 E-value=52 Score=19.04 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHH
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVK 48 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~ 48 (66)
.++..++++++++.|+.-.++.+.+.+..+..+
T Consensus 94 ~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l 126 (198)
T TIGR01428 94 HPDVPAGLRALKERGYRLAILSNGSPAMLKSLV 126 (198)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence 467889999999999876665555544444433
No 393
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=48.87 E-value=36 Score=18.82 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=4.4
Q ss_pred HHHHHHhcCCc
Q 035377 22 LIATTVNSGVL 32 (66)
Q Consensus 22 ~~~~~~~~gv~ 32 (66)
+.+-+.+.|-+
T Consensus 9 vk~~aek~g~e 19 (107)
T PRK14717 9 IKELAEKYGAE 19 (107)
T ss_pred HHHHHHhcCCc
Confidence 33334444443
No 394
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=48.76 E-value=44 Score=20.23 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=26.3
Q ss_pred HHHHHHHHH-hcCCcEEEeeccCh---hhHHHHHHHHHhCCCeEeeeeec
Q 035377 19 APQLIATTV-NSGVLHFAVNGVSE---EDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~-~~gv~~~~~~~~~~---~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
+++++++.. ..+++.++++|--. .+..+++++.++ ++++...|-|
T Consensus 30 l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~-~~~~~v~GNH 78 (218)
T PRK09968 30 LQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ-PWFISVKGNH 78 (218)
T ss_pred HHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh-CCcEEEECch
Confidence 555666654 34678888877311 234556666654 4566666655
No 395
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=48.59 E-value=80 Score=21.13 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=27.3
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChh-hHHHHHHHHHhCCCeEeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEE-DWNLVKDMSERHPSVIPCF 61 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~-~~~~~~~l~~~~~~i~~~~ 61 (66)
|.+-+.+.|.-+.=+++++.+.+++ ||+++.+.+.+|..+..+.
T Consensus 213 DpeVlekaAEvaEGeRclLaSanldlDy~~ia~AA~ky~H~VLsw 257 (403)
T COG2069 213 DPEVLEKAAEVAEGERCLLASANLDLDYERIAEAALKYDHVVLSW 257 (403)
T ss_pred CHHHHHHHHHhhcCceEEeeccccccCHHHHHHHHHhcCceEEEe
Confidence 3333333333333366666666655 7999999999998755543
No 396
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=48.52 E-value=40 Score=19.75 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
+++++..++.+.+-++++|...---+..+ +.++. .++.+||
T Consensus 69 ~~~~~~l~~~~~Dl~v~~~~~~il~~~~l---~~~~~--~~iNiHp 109 (181)
T PF00551_consen 69 EELLELLESLNPDLIVVAGYGRILPKEFL---SIPPY--GIINIHP 109 (181)
T ss_dssp HHHHHHHHHTT-SEEEESS-SS---HHHH---HHSTT--SEEEEES
T ss_pred hHHHHHHHhhccceeehhhhHHHhhhhhh---hcccc--cEEEEee
Confidence 45666777777877766665432222333 33332 5667777
No 397
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=48.49 E-value=20 Score=23.51 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeee
Q 035377 21 QLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 21 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
+.+.+.-+.+ +.++++..++.++.++..++++||.-|.-+||
T Consensus 15 ~~L~~l~~~~-~diVvl~ADl~~St~~~~f~~~fPdR~~NvGI 56 (312)
T COG3958 15 ETLAELGRKN-SDIVVLDADLSSSTKTGYFAKEFPDRFFNVGI 56 (312)
T ss_pred HHHHHHHhcC-CCEEEEecccccccchhHHHHhCchhheecch
Confidence 3344444444 34777788999999999999999986666665
No 398
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=48.47 E-value=54 Score=20.08 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHhcCCcEEEeecc---ChhhHHHHHHHHHh
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGV---SEEDWNLVKDMSER 53 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~---~~~~~~~~~~l~~~ 53 (66)
++.+++++++.+.|.+.+++-|+ +.+...++.+..++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~ 50 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKK 50 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHh
Confidence 56677777889999998876444 44566666665665
No 399
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=48.47 E-value=53 Score=19.00 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeE
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVI 58 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~ 58 (66)
.....+++++.||. +..+|..--+..++.+++..-+++|
T Consensus 123 ~~~~a~~l~~~gv~-i~~vgv~~~~~~~L~~iA~~~~~~f 161 (185)
T cd01474 123 PEHEAKLSRKLGAI-VYCVGVTDFLKSQLINIADSKEYVF 161 (185)
T ss_pred hHHHHHHHHHcCCE-EEEEeechhhHHHHHHHhCCCCeeE
Confidence 34456677778874 5566664444555666666433455
No 400
>PRK03202 6-phosphofructokinase; Provisional
Probab=48.41 E-value=45 Score=21.78 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
+.+.+++..++.+++.++++|- -.++..+..|++
T Consensus 81 ~~~~~~~~l~~~~Id~Li~IGG-d~s~~~a~~L~e 114 (320)
T PRK03202 81 GRAKAIENLKKLGIDALVVIGG-DGSYMGAKRLTE 114 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHHHh
Confidence 4778889999999999999995 466666677765
No 401
>PLN02891 IMP cyclohydrolase
Probab=48.34 E-value=38 Score=24.02 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCC
Q 035377 21 QLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 21 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
+-++.|.++||..++.+|.+.+|-+ +++.+.++.
T Consensus 501 D~ve~aa~~Gv~aIIQPGGSiRD~e-vI~aane~g 534 (547)
T PLN02891 501 DAVEEACQAGVKVIAEPGGSMRDQD-AIDCCNKYG 534 (547)
T ss_pred ccHHHHHHhCCEEEECCCCCCCcHH-HHHHHHHhC
Confidence 5678888999999999999988866 466677775
No 402
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=48.31 E-value=26 Score=22.71 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCcEEEeeccC
Q 035377 19 APQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
-..+++.|.+.||++++.++||
T Consensus 108 T~nv~~aa~~~~v~~~v~ISTD 129 (293)
T PF02719_consen 108 TQNVAEAAIEHGVERFVFISTD 129 (293)
T ss_dssp HHHHHHHHHHTT-SEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEcccc
Confidence 3467788899999999999987
No 403
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.30 E-value=66 Score=20.08 Aligned_cols=27 Identities=11% Similarity=-0.060 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccChh
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVSEE 42 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~~~ 42 (66)
.+.+.+.++++.+.|.+.+-+...++.
T Consensus 10 ~g~~~~a~~~~~~~G~~~~qif~~~P~ 36 (274)
T TIGR00587 10 AGGLQAAYNRAAEIGATAFMFFLKSPR 36 (274)
T ss_pred cCCHHHHHHHHHHhCCCEEEEEecCcc
Confidence 467888999999999987666555554
No 404
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=48.30 E-value=45 Score=18.11 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEED 43 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~ 43 (66)
.+++++++.+.++..+...|..|--
T Consensus 41 ~~~ii~~~~~~~~~~i~l~GGEPll 65 (139)
T PF13353_consen 41 IEEIIEELKNYGIKGIVLTGGEPLL 65 (139)
T ss_dssp HHHHCHHHCCCCCCEEEEECSTGGG
T ss_pred hhhhhhHHhcCCceEEEEcCCCeee
Confidence 4566677777888888888765544
No 405
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=48.23 E-value=37 Score=21.51 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccC---hhhHHHHHHHHH
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVS---EEDWNLVKDMSE 52 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~---~~~~~~~~~l~~ 52 (66)
+..++.++.+.+.|-+.+++=|++ .+...++.+..+
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik 66 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIK 66 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHH
Confidence 677889999999999998876654 344455555444
No 406
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=48.22 E-value=74 Score=20.61 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCcEEEeecc------------------ChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 19 APQLIATTVNSGVLHFAVNGV------------------SEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~------------------~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
..+++++|...|-+-++.+-+ +.+-.++..++++.+ +|+.++|.|
T Consensus 36 ~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar~~-nIwlSlgg~ 98 (295)
T KOG0807|consen 36 CKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELARSH-NIWLSLGGH 98 (295)
T ss_pred HHHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHHhc-CeeEEeccc
Confidence 467889998888776554321 122344566777754 788888765
No 407
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=48.17 E-value=49 Score=22.43 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCc---EEEeeccChhhHHHHHHHHHh
Q 035377 20 PQLIATTVNSGVL---HFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 20 ~~~~~~~~~~gv~---~~~~~~~~~~~~~~~~~l~~~ 53 (66)
++.++..++.|+. +.++.+.++ +.+++.+|.+.
T Consensus 292 ~k~~~~~~~~G~dp~~k~Iv~S~~L-de~~i~~L~~~ 327 (400)
T PRK05321 292 EKAIAHYEKLGIDPRTKTLVFSDGL-DFDKALELYRH 327 (400)
T ss_pred HHHHHHHHHcCCCCCCeEEEEeCCC-CHHHHHHHHHH
Confidence 3445566778983 334444343 44556666555
No 408
>PRK05805 phosphate butyryltransferase; Validated
Probab=48.08 E-value=73 Score=20.51 Aligned_cols=19 Identities=5% Similarity=0.088 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcCCcEEEee
Q 035377 19 APQLIATTVNSGVLHFAVN 37 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~ 37 (66)
++++++++++.+-.+++++
T Consensus 5 ~~~l~~~a~~~~~~ri~~~ 23 (301)
T PRK05805 5 FDEILSKAKEQPPKTISVA 23 (301)
T ss_pred HHHHHHHHhcCCCCeEEEe
Confidence 4556666664343444333
No 409
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=48.06 E-value=74 Score=21.81 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhcC--CcEEEeeccChhhHHHHHHHHHhCC
Q 035377 17 HKAPQLIATTVNSG--VLHFAVNGVSEEDWNLVKDMSERHP 55 (66)
Q Consensus 17 ~~~~~~~~~~~~~g--v~~~~~~~~~~~~~~~~~~l~~~~~ 55 (66)
.+..+.++++++.| |-++.+...+.+|..+++++.++.+
T Consensus 116 ~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~ll~~~~~~~ 156 (477)
T PRK09310 116 EDIIQLYNEMLASAADYYKIAVSSSSSTDLLNIIHQKRSLP 156 (477)
T ss_pred chHHHHHHHHHHcCCCEEEEeeCCCCHHHHHHHHHHHhhCC
Confidence 45678888898876 6688888888888888888776654
No 410
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=48.01 E-value=56 Score=19.19 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHH
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLV 47 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~ 47 (66)
+...+.++++++.|+.-+++.|-.+......
T Consensus 18 ~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~ 48 (225)
T TIGR01482 18 ESALEAIRKAESVGIPVVLVTGNSVQFARAL 48 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHH
Confidence 3456788999999998777777555554443
No 411
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=47.98 E-value=39 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.018 Sum_probs=23.5
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDW 44 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~ 44 (66)
+..++..+.+++++++||+-.++.|-++...
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA 580 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVT 580 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 3456788999999999999777777555443
No 412
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=47.98 E-value=35 Score=21.46 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=22.4
Q ss_pred eeccChhhHHHHHHHHHhCCCeEeeee
Q 035377 36 VNGVSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
.|-.+++.+++++.++++-+|++|-+|
T Consensus 105 aVEfs~R~~reLl~~a~~R~Ni~PIL~ 131 (231)
T COG1889 105 AVEFSPRPMRELLDVAEKRPNIIPILE 131 (231)
T ss_pred EEEecchhHHHHHHHHHhCCCceeeec
Confidence 344568889999999999999998765
No 413
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=47.97 E-value=12 Score=21.24 Aligned_cols=30 Identities=20% Similarity=0.091 Sum_probs=18.8
Q ss_pred cCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377 8 CHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 8 ~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
+||++ |..++++++.+.++.+=..+++||.
T Consensus 28 VHLTM--YG~~i~dvi~~Ir~~~~~~lvVVGa 57 (120)
T PF01994_consen 28 VHLTM--YGENIDDVIDEIRESCKDLLVVVGA 57 (120)
T ss_dssp EEE-T--TSEEHHHCHHHHHHCTSEEEEEE-S
T ss_pred EEEEe--cCCchHHHHHHHhccCCCEEEEECC
Confidence 57765 4457788888887655455777775
No 414
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=47.93 E-value=45 Score=18.13 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=20.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
+..+.++++++.|+.- ..+|....+.+.+.+|+..
T Consensus 120 ~~~~~~~~~~~~~v~v-~~i~~g~~~~~~l~~la~~ 154 (161)
T cd01450 120 DPKEAAAKLKDEGIKV-FVVGVGPADEEELREIASC 154 (161)
T ss_pred chHHHHHHHHHCCCEE-EEEeccccCHHHHHHHhCC
Confidence 3667777777777653 3344433455555555554
No 415
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=47.83 E-value=71 Score=21.22 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHhcCCcE----EEeeccChhh-HHHHHHHHHhC-CCeEeeeeecC
Q 035377 17 HKAPQLIATTVNSGVLH----FAVNGVSEED-WNLVKDMSERH-PSVIPCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~----~~~~~~~~~~-~~~~~~l~~~~-~~i~~~~GiHP 65 (66)
+|+-+.++.++++|++- ++=+|-+.+| .+.+..|++.- |.-.|.-+++|
T Consensus 179 edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P 233 (335)
T COG0502 179 EDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNP 233 (335)
T ss_pred HHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecC
Confidence 56788899999999862 3323334555 55566677665 66556666666
No 416
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.72 E-value=64 Score=19.76 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
-+++++++.++|=-++++-+-+.++...+++.+++.
T Consensus 112 ~p~ll~~We~~GQ~KIvvk~~~e~~l~~l~~~A~~~ 147 (190)
T KOG3282|consen 112 DPELLRRWENCGQAKIVVKAESEEELMELQKDAKKL 147 (190)
T ss_pred CHHHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHc
Confidence 367899999999889988777777777777777764
No 417
>PLN02522 ATP citrate (pro-S)-lyase
Probab=47.72 E-value=94 Score=22.38 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCcEEEeecc--ChhhHHHHHHHHHhCC
Q 035377 19 APQLIATTVNSGVLHFAVNGV--SEEDWNLVKDMSERHP 55 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~--~~~~~~~~~~l~~~~~ 55 (66)
.+.+++++.+.||+.+++++. ...+-+++.++++++.
T Consensus 92 ~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g 130 (608)
T PLN02522 92 AASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANN 130 (608)
T ss_pred HHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcC
Confidence 578888888889998877654 4456677888888863
No 418
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=47.70 E-value=13 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.4
Q ss_pred CcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377 13 PRIFHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 13 ~~~~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
+++.++.++.+++..+.|+++++++..
T Consensus 242 ~Wl~P~~~~~l~~l~~~G~k~V~vvP~ 268 (322)
T TIGR00109 242 PWLGPYTEELLEKLGEQGVQHIVVVPI 268 (322)
T ss_pred CcCCCCHHHHHHHHHHcCCceEEEECC
Confidence 345678999999999999998776654
No 419
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=47.67 E-value=17 Score=24.09 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=19.4
Q ss_pred eEeeccCCCCCcCCCCHHHHHHHHHhcCCcE
Q 035377 3 LFDAHCHLQDPRIFHKAPQLIATTVNSGVLH 33 (66)
Q Consensus 3 ~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~ 33 (66)
..+.||||+. .-..+-+.+.++..|+..
T Consensus 13 kaelH~HL~g---~l~p~~v~~la~r~gi~~ 40 (345)
T COG1816 13 KAELHRHLEG---SLRPELVLELARRYGIAL 40 (345)
T ss_pred hhHhhhcccC---CcCHHHHHHHHHHhCccC
Confidence 4578999985 234566777777788753
No 420
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=47.62 E-value=58 Score=19.22 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=23.8
Q ss_pred CHHHHHHHHHhcCCcEEEeecc----ChhhHHHHHHHHHh
Q 035377 18 KAPQLIATTVNSGVLHFAVNGV----SEEDWNLVKDMSER 53 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~----~~~~~~~~~~l~~~ 53 (66)
++++.+++.++.|++.+.+++. +++.=+++.++.++
T Consensus 135 ~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~~v~eii~e 174 (176)
T PF05378_consen 135 EVREALRELKDKGVEAVAVSLLFSYRNPEHEQRVAEIIRE 174 (176)
T ss_pred HHHHHHHHHHhCCCCEEEEECccCCCCHHHHHHHHHHHHh
Confidence 4667788889999998877664 34333345555554
No 421
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=47.46 E-value=72 Score=20.28 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCcEEEeeccC
Q 035377 19 APQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
..++++...+.||.++++.|++
T Consensus 23 l~~lv~~~~~~Gv~gi~v~Gst 44 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTS 44 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccC
Confidence 5677888888999998888863
No 422
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=47.41 E-value=29 Score=19.92 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCcEEEeeccChhh
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEED 43 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~ 43 (66)
.+.+-+|...|.++++++|+...+
T Consensus 43 ~~fvl~Al~~GaDGV~v~GC~~ge 66 (132)
T COG1908 43 PEFVLKALRKGADGVLVAGCKIGE 66 (132)
T ss_pred HHHHHHHHHcCCCeEEEecccccc
Confidence 457778888899999999986543
No 423
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=47.37 E-value=43 Score=21.77 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=22.3
Q ss_pred HHhcCCcEEEeeccChh-----h------HHHHHHHHHhC--CCeEeeee
Q 035377 26 TVNSGVLHFAVNGVSEE-----D------WNLVKDMSERH--PSVIPCFG 62 (66)
Q Consensus 26 ~~~~gv~~~~~~~~~~~-----~------~~~~~~l~~~~--~~i~~~~G 62 (66)
.+..+.+++|+.|...+ + ..++++.++++ |-++.|.|
T Consensus 95 i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwG 144 (302)
T PRK05368 95 IKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWA 144 (302)
T ss_pred hccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHH
Confidence 45678899999887644 2 44555666654 22444444
No 424
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=47.29 E-value=59 Score=19.24 Aligned_cols=35 Identities=9% Similarity=-0.022 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
..+...++++..++.|+.-.++.+......+..++
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~ 127 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGLASASPLHMLEAVLT 127 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Confidence 45678999999999998877666655554444433
No 425
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=47.29 E-value=59 Score=19.19 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccChhhHHHHH
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVK 48 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~ 48 (66)
.+...+.++++++.|+.-+++.|-.+.......
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~ 52 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGNTVPFARALA 52 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH
Confidence 345667899999999987777776665555443
No 426
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=47.26 E-value=42 Score=24.76 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=24.7
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhHHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNL 46 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~ 46 (66)
+.+++..+.+++++++|++-.++.|-+.+....
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ 560 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVS 560 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 446788999999999999877776755554443
No 427
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=47.24 E-value=33 Score=20.68 Aligned_cols=45 Identities=11% Similarity=-0.139 Sum_probs=27.3
Q ss_pred HHHHHHHHHhc-CCcEEEeecc---ChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 19 APQLIATTVNS-GVLHFAVNGV---SEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~~~-gv~~~~~~~~---~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
++++++++... +.+.++++|- .-.++.+++++.++ ++++.-.|=|
T Consensus 32 L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~-~~~~~v~GNH 80 (218)
T PRK11439 32 LMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEE-HWVRAVRGNH 80 (218)
T ss_pred HHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHc-CCceEeeCch
Confidence 56677766533 5677888773 12356667777665 4555555655
No 428
>PRK14565 triosephosphate isomerase; Provisional
Probab=47.24 E-value=45 Score=20.94 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=20.9
Q ss_pred CCHHHHH----HHHHhcCCcEEEeeccChhh
Q 035377 17 HKAPQLI----ATTVNSGVLHFAVNGVSEED 43 (66)
Q Consensus 17 ~~~~~~~----~~~~~~gv~~~~~~~~~~~~ 43 (66)
.+.++.+ ++|.++|+.-++|+|.+.++
T Consensus 101 ~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~ 131 (237)
T PRK14565 101 HETDSDIRLKAESAIESGLIPIICVGETLED 131 (237)
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence 3445566 78899999999999987664
No 429
>PRK08418 chlorohydrolase; Provisional
Probab=47.21 E-value=6.9 Score=25.91 Aligned_cols=9 Identities=33% Similarity=0.840 Sum_probs=8.2
Q ss_pred eEeeccCCC
Q 035377 3 LFDAHCHLQ 11 (66)
Q Consensus 3 ~iDsH~Hl~ 11 (66)
+||+|+|+.
T Consensus 60 ~Vn~H~H~~ 68 (408)
T PRK08418 60 FINPHTHLE 68 (408)
T ss_pred ccccccchh
Confidence 899999986
No 430
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=47.18 E-value=56 Score=18.92 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHH
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDM 50 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l 50 (66)
.+++...+..+.+|++.++.++. +.+..+++.++
T Consensus 106 ~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 106 ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 35666666777888888766553 44555555544
No 431
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=47.17 E-value=47 Score=21.66 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeee
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGV 63 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~Gi 63 (66)
+.+++++..++.||+.++++|-+ .++..+..|++. + .+.+|+
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~--~-i~vigi 121 (317)
T cd00763 80 GQAKAIEQLKKHGIDALVVIGGD-GSYMGAMRLTEH--G-FPCVGL 121 (317)
T ss_pred HHHHHHHHHHHcCCCEEEEECCc-hHHHHHHHHHHc--C-CCEEEe
Confidence 46778889999999999999964 566666667663 2 344554
No 432
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=47.07 E-value=62 Score=19.41 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=20.8
Q ss_pred HHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCC
Q 035377 23 IATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 23 ~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
++++.+.|..++++-+...++-+.+.++++.++.
T Consensus 89 ~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~ 122 (233)
T PRK00748 89 VEALLDAGVSRVIIGTAAVKNPELVKEACKKFPG 122 (233)
T ss_pred HHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCC
Confidence 3556667888775433344555566777777654
No 433
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=47.03 E-value=39 Score=19.44 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
+.+++.++++.+.|+++++++-.-
T Consensus 99 P~i~~~l~~l~~~g~~~iivlPl~ 122 (159)
T cd03411 99 PSIEEALEELKADGVDRIVVLPLY 122 (159)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECC
Confidence 468999999999999998876543
No 434
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=46.86 E-value=74 Score=20.46 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=25.4
Q ss_pred CHHHHHHHHHhcCCcEEEeeccCh---hhHHHHHHHHHhCCC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSE---EDWNLVKDMSERHPS 56 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~---~~~~~~~~l~~~~~~ 56 (66)
++..+++++.+.|+..+...|..| .++..+++.+++.+.
T Consensus 49 ei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~ 90 (329)
T PRK13361 49 ELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPG 90 (329)
T ss_pred HHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCC
Confidence 345566677788999888877644 345556665665554
No 435
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=46.36 E-value=37 Score=22.73 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=9.0
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||.|.|.+.
T Consensus 58 G~iDlHvHvy~ 68 (386)
T COG3964 58 GLIDLHVHVYY 68 (386)
T ss_pred CeeeeeeEEec
Confidence 37999999864
No 436
>PRK00035 hemH ferrochelatase; Reviewed
Probab=46.35 E-value=78 Score=20.36 Aligned_cols=39 Identities=8% Similarity=0.009 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccCh--------hhHHHHHHHHHhCC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSE--------EDWNLVKDMSERHP 55 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~--------~~~~~~~~l~~~~~ 55 (66)
+.+++.++++.+.|+++++++-..+ ...+.+.+..++++
T Consensus 105 P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~ 151 (333)
T PRK00035 105 PSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLR 151 (333)
T ss_pred CCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcC
Confidence 4689999999999999988776554 22444445555554
No 437
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=46.15 E-value=15 Score=19.92 Aligned_cols=19 Identities=11% Similarity=0.373 Sum_probs=15.2
Q ss_pred ChhhHHHHHHHHHhCCCeE
Q 035377 40 SEEDWNLVKDMSERHPSVI 58 (66)
Q Consensus 40 ~~~~~~~~~~l~~~~~~i~ 58 (66)
+.+.+.++.+++.++|.+|
T Consensus 91 D~~~y~~lv~l~~~~p~lf 109 (109)
T PF08661_consen 91 DMDLYNELVQLTHKFPELF 109 (109)
T ss_dssp -HHHHHHHHHHHHHSGGGS
T ss_pred CHHHHHHHHHHHhhCCccC
Confidence 5677889999999998765
No 438
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=46.09 E-value=6.7 Score=26.32 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=8.9
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.|||+|+|++.
T Consensus 52 GfVn~H~H~~~ 62 (455)
T TIGR02022 52 GLANLHSHAFQ 62 (455)
T ss_pred CCcccCcchhh
Confidence 38999999863
No 439
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=45.94 E-value=45 Score=22.29 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=15.7
Q ss_pred EEeeccChhhHHHHHHHHHh
Q 035377 34 FAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 34 ~~~~~~~~~~~~~~~~l~~~ 53 (66)
.+.+|+.+++++++.+|.+.
T Consensus 100 ~vavG~~~~d~er~~~L~~~ 119 (346)
T PRK05096 100 MVSTGTSDADFEKTKQILAL 119 (346)
T ss_pred EEEecCCHHHHHHHHHHHhc
Confidence 55778888888888888774
No 440
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=45.85 E-value=6.5 Score=26.31 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=8.5
Q ss_pred ceEeeccCCC
Q 035377 2 KLFDAHCHLQ 11 (66)
Q Consensus 2 ~~iDsH~Hl~ 11 (66)
.|||+|+|++
T Consensus 52 GlVn~H~H~~ 61 (456)
T PRK09229 52 GMPNLHSHAF 61 (456)
T ss_pred CcccccccHh
Confidence 3899999985
No 441
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=45.82 E-value=67 Score=20.86 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=24.7
Q ss_pred CcEEEeeccChhhHHHHHHHHHhCCC--eEeeee
Q 035377 31 VLHFAVNGVSEEDWNLVKDMSERHPS--VIPCFG 62 (66)
Q Consensus 31 v~~~~~~~~~~~~~~~~~~l~~~~~~--i~~~~G 62 (66)
|+.++++...+|-...+-..++.||+ ++.+=|
T Consensus 58 VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg 91 (285)
T PF14234_consen 58 VKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPG 91 (285)
T ss_pred eeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCC
Confidence 67788777667777788899999997 666544
No 442
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=45.78 E-value=58 Score=19.07 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=19.8
Q ss_pred cEEEeeccChhh----HHHHHHHHHhCCC-eEeeeee
Q 035377 32 LHFAVNGVSEED----WNLVKDMSERHPS-VIPCFGV 63 (66)
Q Consensus 32 ~~~~~~~~~~~~----~~~~~~l~~~~~~-i~~~~Gi 63 (66)
..+++++.+..+ +....++.++||. -+.-+||
T Consensus 15 ~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gI 51 (167)
T cd07036 15 PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPI 51 (167)
T ss_pred CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCC
Confidence 346666766644 4566778888886 4554443
No 443
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=45.76 E-value=75 Score=19.96 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCc--E---EEeeccChhhHHHHHHHHHhCCC
Q 035377 19 APQLIATTVNSGVL--H---FAVNGVSEEDWNLVKDMSERHPS 56 (66)
Q Consensus 19 ~~~~~~~~~~~gv~--~---~~~~~~~~~~~~~~~~l~~~~~~ 56 (66)
..+-++++.+.|+. + ++..|.+.++....++++++.+-
T Consensus 136 vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~ 178 (302)
T TIGR02668 136 VIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGA 178 (302)
T ss_pred HHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 34455677778765 2 23344677788888888887654
No 444
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=45.74 E-value=39 Score=19.85 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=18.9
Q ss_pred cChhhHHHHHHHHHhCC--CeEeeee
Q 035377 39 VSEEDWNLVKDMSERHP--SVIPCFG 62 (66)
Q Consensus 39 ~~~~~~~~~~~l~~~~~--~i~~~~G 62 (66)
+++++-+++.+++++|. |+.--+|
T Consensus 50 MDLEnQ~Rvk~~aEk~g~eNvvVllG 75 (154)
T PRK13265 50 MDLENQKRVKDLAEKFGAENVVVILG 75 (154)
T ss_pred cchHHHHHHHHHHHhcCCccEEEEec
Confidence 37899999999999985 5655554
No 445
>PLN02954 phosphoserine phosphatase
Probab=45.69 E-value=63 Score=19.05 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
+.+...++++..++.|+.-.++.+......+.+++
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~ 119 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAA 119 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHH
Confidence 45678999999999998766555544333333333
No 446
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=45.61 E-value=64 Score=19.12 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
+.+...|+.+|+.++++-| ..+|.+++.++ .+| .++.|..|
T Consensus 76 ~~~a~~a~~~G~aG~VidG-~vRD~~~i~~l--~fP--Vfa~g~~p 116 (163)
T PRK12487 76 DQIAQSALDNGWEGIVING-CVRDVGALSTM--DLG--VKALGASP 116 (163)
T ss_pred HHHHHHHHHCCCeEEEEee-cccCHHHHhhC--CCC--eEEeecCC
Confidence 3455678889999987766 56777776654 244 23445554
No 447
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=45.57 E-value=62 Score=18.99 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
+.+...+++++.++.|+.-.++.+.........++
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~ 117 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLK 117 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 45678899999999998766665555444554444
No 448
>PLN02449 ferrochelatase
Probab=45.46 E-value=17 Score=25.22 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=33.2
Q ss_pred CcCCCCHHHHHHHHHhcCCcEEEeeccC-----hhh---H-HHHHHHHHhCCC----eEeeeeecC
Q 035377 13 PRIFHKAPQLIATTVNSGVLHFAVNGVS-----EED---W-NLVKDMSERHPS----VIPCFGVHP 65 (66)
Q Consensus 13 ~~~~~~~~~~~~~~~~~gv~~~~~~~~~-----~~~---~-~~~~~l~~~~~~----i~~~~GiHP 65 (66)
+++.++.++.+++..+.|++.++++... .|. . .+..+++++... ..+|++-||
T Consensus 334 eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~p 399 (485)
T PLN02449 334 EWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCEP 399 (485)
T ss_pred CCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCCH
Confidence 3556789999999999999987766542 222 1 234455665532 234666655
No 449
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.44 E-value=69 Score=19.44 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCcEEEeec---cChhhHHHHHHHHHhCCCeEeee
Q 035377 19 APQLIATTVNSGVLHFAVNG---VSEEDWNLVKDMSERHPSVIPCF 61 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~---~~~~~~~~~~~l~~~~~~i~~~~ 61 (66)
+...+...-+.|++-++..| +.+--.+-+.+|.++||.+-.++
T Consensus 31 i~~~l~~lleeGleW~litGqLG~E~WA~Evv~eLk~eyp~ik~av 76 (180)
T COG4474 31 IKKKLEALLEEGLEWVLITGQLGFELWAAEVVIELKEEYPHIKLAV 76 (180)
T ss_pred HHHHHHHHHhcCceEEEEeccccHHHHHHHHHHHHHhhCCCeeEEE
Confidence 44555666778999888766 23445667888999999765543
No 450
>PRK08508 biotin synthase; Provisional
Probab=45.42 E-value=55 Score=20.65 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=13.8
Q ss_pred CHHHHHHHHHh---cCCcEEEee
Q 035377 18 KAPQLIATTVN---SGVLHFAVN 37 (66)
Q Consensus 18 ~~~~~~~~~~~---~gv~~~~~~ 37 (66)
+.+++++.+++ .|+..+..+
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~lv 63 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCLV 63 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE
Confidence 56777776654 788887654
No 451
>cd02139 Nitroreductase_3 Nitroreductase-like family 3. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=45.31 E-value=35 Score=19.26 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC-CCeEeeeee
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH-PSVIPCFGV 63 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~Gi 63 (66)
...++-.|.+.|+..+...+.+.+...+.+.+-+.+ +-...++|.
T Consensus 101 ~~~l~l~A~~~Glgt~~~~~~~~~~~~~~l~l~~~~~~~~~i~iG~ 146 (164)
T cd02139 101 MEHMMLAAAELGLGTCWIGAFDEDEIKEALDIPENEEVVAILPLGY 146 (164)
T ss_pred HHHHHHHHHHcCCceeeeeccCHHHHHHHhCcCCCeEEEEEEeecC
Confidence 345566778899988776676666666666654332 224446664
No 452
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=45.25 E-value=26 Score=23.55 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
++..+.++++++.| .++++|||+
T Consensus 256 ~eta~~In~ak~~G-~RIiAVGTT 278 (366)
T PRK01424 256 PETAEIINKAKQEG-RRIIAVGTT 278 (366)
T ss_pred HHHHHHHHHHHHcC-CeEEEEecc
Confidence 34667888999888 789999985
No 453
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=45.21 E-value=77 Score=19.94 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE 52 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~ 52 (66)
++..++.+++.+.|.+.++++|-|=.-.+-+..+..
T Consensus 39 ~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~ 74 (293)
T TIGR03702 39 GDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQ 74 (293)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHh
Confidence 566777777777777778788876555554445543
No 454
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=45.09 E-value=77 Score=19.89 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccC-hhhHHHHHHHHHh
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVS-EEDWNLVKDMSER 53 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~-~~~~~~~~~l~~~ 53 (66)
+...++.++.+.+.|.+.+++=|++ -...+++.++.++
T Consensus 18 K~~~~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~ 56 (230)
T PF01884_consen 18 KPNPEEALEAACESGTDAIIVGGSDTGVTLDNVVALIKR 56 (230)
T ss_dssp SS-HHHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHh
Confidence 4567888888899999999877776 3445666666555
No 455
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=45.08 E-value=75 Score=19.76 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeee
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
...+.+..-+.|+..+=++-.++.-.+-+.++++++|++...+|
T Consensus 27 a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAG 70 (211)
T COG0800 27 ALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAG 70 (211)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccc
Confidence 33455666778888664444455566667778888887665555
No 456
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=45.04 E-value=71 Score=19.51 Aligned_cols=23 Identities=4% Similarity=0.109 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCcEEEeeccCh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSE 41 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~ 41 (66)
+.++++.....|+++++++...-
T Consensus 88 l~di~~sl~~~Gf~~ivivngHg 110 (237)
T PF02633_consen 88 LRDILRSLARHGFRRIVIVNGHG 110 (237)
T ss_dssp HHHHHHHHHHHT--EEEEEESST
T ss_pred HHHHHHHHHHcCCCEEEEEECCH
Confidence 66777888889999988776543
No 457
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=44.96 E-value=27 Score=14.85 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCcEEE
Q 035377 19 APQLIATTVNSGVLHFA 35 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~ 35 (66)
-.+..+++...||++++
T Consensus 9 ~~~~~~~~l~~GVDgI~ 25 (30)
T PF13653_consen 9 KPASWRELLDLGVDGIM 25 (30)
T ss_dssp SHHHHHHHHHHT-SEEE
T ss_pred CHHHHHHHHHcCCCEee
Confidence 36677888999999885
No 458
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=44.76 E-value=71 Score=23.45 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHH---hCCC-eEeeeee
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSE---RHPS-VIPCFGV 63 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~---~~~~-i~~~~Gi 63 (66)
++.+.+++..++.||+.++++|-+ .++.-+..|++ +||. =.+.+|+
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGd-gs~~~a~~L~~~~~~~~~~~i~vvgI 514 (745)
T TIGR02478 465 KDLGMIAYYFQKHKIDGLLIIGGF-EAFEALLQLEQAREKYPAFRIPMVVI 514 (745)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCCh-HHHHHHHHHHHHHhhCCCCCccEEEe
Confidence 367788899999999999999965 45555555554 4553 2355554
No 459
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=44.75 E-value=50 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.005 Sum_probs=23.6
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDW 44 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~ 44 (66)
+..++..+.+++++++||+-.++.|-++...
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA 580 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVA 580 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 3456788999999999999777777555443
No 460
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=44.68 E-value=56 Score=19.04 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
+...+.++++++.|+.-+++.|-.+.+..+.+.
T Consensus 18 ~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~ 50 (254)
T PF08282_consen 18 PETIEALKELQEKGIKLVIATGRSYSSIKRLLK 50 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHH
T ss_pred HHHHHHHHhhcccceEEEEEccCcccccccccc
Confidence 446678889999999877777766655544444
No 461
>PRK08609 hypothetical protein; Provisional
Probab=44.51 E-value=61 Score=22.82 Aligned_cols=59 Identities=8% Similarity=-0.123 Sum_probs=33.5
Q ss_pred eEeeccCCC------CCcCCCCHHHHHHHHHhcCCcEEEeecc-ChhhHHHHHHHHHhCCCeEeeee
Q 035377 3 LFDAHCHLQ------DPRIFHKAPQLIATTVNSGVLHFAVNGV-SEEDWNLVKDMSERHPSVIPCFG 62 (66)
Q Consensus 3 ~iDsH~Hl~------~~~~~~~~~~~~~~~~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~G 62 (66)
.+|.=.|++ .+.+..+.+++++.+.+.|+.-=++.+. ......+.++.+.++ ++..++|
T Consensus 459 ~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~-Gv~i~ig 524 (570)
T PRK08609 459 YVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEA-GVKLAIN 524 (570)
T ss_pred CceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHc-CCEEEEE
Confidence 577888887 2334557788888888888732222211 122344555666665 3444544
No 462
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=44.24 E-value=61 Score=18.47 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=15.7
Q ss_pred CHHHHHHHHHhcCCcEEEeec
Q 035377 18 KAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~ 38 (66)
...++++++.+.|+.++++.|
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH
Confidence 466777888888888877665
No 463
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=44.21 E-value=52 Score=17.74 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCc
Q 035377 19 APQLIATTVNSGVL 32 (66)
Q Consensus 19 ~~~~~~~~~~~gv~ 32 (66)
..+.++++.++|+.
T Consensus 129 ~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 129 VLEALERLKEAGIP 142 (166)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCC
Confidence 44556677777776
No 464
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=44.09 E-value=60 Score=19.08 Aligned_cols=42 Identities=12% Similarity=-0.030 Sum_probs=27.8
Q ss_pred HHHHHhcC---CcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 23 IATTVNSG---VLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 23 ~~~~~~~g---v~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
++..++.. ..++.++|....-.- ++.++.+.+.+..++++||
T Consensus 86 ~~~l~~~~~~~~~kig~vGfc~GG~~-a~~~a~~~~~~~a~v~~yg 130 (218)
T PF01738_consen 86 VDYLRAQPEVDPGKIGVVGFCWGGKL-ALLLAARDPRVDAAVSFYG 130 (218)
T ss_dssp HHHHHCTTTCEEEEEEEEEETHHHHH-HHHHHCCTTTSSEEEEES-
T ss_pred HHHHHhccccCCCcEEEEEEecchHH-hhhhhhhccccceEEEEcC
Confidence 44445544 457888898766544 4556666677889999998
No 465
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=44.08 E-value=74 Score=19.46 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccC---hhhHHHHHHHHHhCC---CeEeeeeecC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVS---EEDWNLVKDMSERHP---SVIPCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~---~~~~~~~~~l~~~~~---~i~~~~GiHP 65 (66)
.|..+-++...+.|+++++..|.. .+..+.+.+|.++.. .|.++-|+-|
T Consensus 127 ~d~~~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~ 181 (201)
T PF03932_consen 127 PDPEEALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGGVRA 181 (201)
T ss_dssp STHHHHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--T
T ss_pred CCHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCH
Confidence 567888888888999999988753 344555666655543 2666666644
No 466
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=43.97 E-value=47 Score=25.02 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeEeeeeecC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP 65 (66)
.|++.++.+....| .++.+.+.++.+.+.++++.+...-=+.++||=|
T Consensus 809 ~dl~~~l~~Id~sg-eGv~vqastlgslealleflk~~kIPv~gi~IGP 856 (1064)
T KOG1144|consen 809 EDLESVLSRIDKSG-EGVYVQASTLGSLEALLEFLKTVKIPVSGIGIGP 856 (1064)
T ss_pred HHHHHHHHHhhccC-CceEEEecccchHHHHHHHHhhcCcccccccccc
Confidence 35667777777776 4455667789999999999887543445667655
No 467
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=43.92 E-value=72 Score=19.23 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCcEEEeec----cChhhHHHHHH-HHHhCCCeEeeeeecC
Q 035377 19 APQLIATTVNSGVLHFAVNG----VSEEDWNLVKD-MSERHPSVIPCFGVHP 65 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~----~~~~~~~~~~~-l~~~~~~i~~~~GiHP 65 (66)
+.++.+++.+.|++.+.+.= ..|.+..++++ +.+.+|. ..+|+|.
T Consensus 139 ~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H~ 188 (237)
T PF00682_consen 139 LLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGFHA 188 (237)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEEEe
Confidence 45566666777777654431 24666555444 3445666 5566664
No 468
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=43.86 E-value=75 Score=19.40 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
..+...+++++.++.|+.-.++.+...+..+..++
T Consensus 109 l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~ 143 (248)
T PLN02770 109 PLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMIS 143 (248)
T ss_pred cCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH
Confidence 34678899999999999877666655555554444
No 469
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=43.68 E-value=84 Score=19.96 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCHHHHHHHH-HhcCCcEEEeeccC---hhhHHHHHHHHHhCCC-eEeeeeecC
Q 035377 17 HKAPQLIATT-VNSGVLHFAVNGVS---EEDWNLVKDMSERHPS-VIPCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~-~~~gv~~~~~~~~~---~~~~~~~~~l~~~~~~-i~~~~GiHP 65 (66)
.++++..+.+ ...+-+++++.|.. +.+.+.+.+..+..|. ++..-|+-|
T Consensus 158 ~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSGvt~ 211 (254)
T PF03437_consen 158 RDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSGVTP 211 (254)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecCCCH
Confidence 3567666665 55566788877753 4455555555555543 555656543
No 470
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=43.62 E-value=92 Score=20.36 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=22.1
Q ss_pred CcCCCCHHHHHHHHHhcC-CcEEEeeccChhhH
Q 035377 13 PRIFHKAPQLIATTVNSG-VLHFAVNGVSEEDW 44 (66)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g-v~~~~~~~~~~~~~ 44 (66)
+.++.++.++++..++.| +.-+++....+++.
T Consensus 91 PTLy~~L~elI~~~k~~g~~~tflvTNgslpdv 123 (296)
T COG0731 91 PTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDV 123 (296)
T ss_pred cccccCHHHHHHHHHhcCCceEEEEeCCChHHH
Confidence 456788999999999999 55444443344443
No 471
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=43.59 E-value=73 Score=19.23 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhCCCeE
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVI 58 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~i~ 58 (66)
....++..++.|.+.+.+++. ...-..+..+.+++|.+.
T Consensus 140 l~~ai~~L~~~G~~~I~~~~l-l~~~~gl~~l~~~~p~v~ 178 (209)
T PRK00129 140 AIAAIDLLKKRGAKNIKVLCL-VAAPEGIKALEEAHPDVE 178 (209)
T ss_pred HHHHHHHHHHcCCCEEEEEEE-ecCHHHHHHHHHHCCCcE
Confidence 566777888888877766554 455556677888899844
No 472
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=43.57 E-value=52 Score=23.84 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=21.5
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChh
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEE 42 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~ 42 (66)
...++..+.++++++.|++-.++.|.+..
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ 474 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRL 474 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 34567888999999999987776665443
No 473
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=43.55 E-value=83 Score=19.82 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=25.2
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKD 49 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~ 49 (66)
...+...++++..++.|+.-.++.+...+..+..++
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~ 177 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQ 177 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 345788999999999999866666555555544443
No 474
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.52 E-value=78 Score=19.51 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCcEEEeec
Q 035377 19 APQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~ 38 (66)
....++.|+..|+..+.+.|
T Consensus 101 ~~~~i~~a~~lG~~~i~~~~ 120 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLAG 120 (283)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 55677888999998776544
No 475
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=43.49 E-value=68 Score=20.16 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHhcCCcEEEeecc-------ChhhHHHHHHHHHh-CCCeE-eeeeecC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGV-------SEEDWNLVKDMSER-HPSVI-PCFGVHP 65 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~-------~~~~~~~~~~l~~~-~~~i~-~~~GiHP 65 (66)
+++++.++.+...|+..++++=. ..+|....+.++++ +|.+- .-+|.||
T Consensus 47 P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DIP~~L~~~~~~~~~~~~~p~G~~~ 104 (245)
T COG2138 47 PSLREALQALVARGVDRIVVVPLFLAAGYHTKRDIPAELGLARQAHPQVDLSPLGTHP 104 (245)
T ss_pred CCHHHHHHHHHhcCCCeEEEeehhhccCchhhcccHHHHHHhhhcCCcccccccCCch
Confidence 47899999999999998765522 24566666665554 56532 2577776
No 476
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=43.41 E-value=60 Score=18.18 Aligned_cols=29 Identities=7% Similarity=0.039 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhh
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEED 43 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~ 43 (66)
..+...+++++.++.|+.-.++.+.....
T Consensus 86 ~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~ 114 (183)
T TIGR01509 86 PLPGVEPLLEALRARGKKLALLTNSPRDH 114 (183)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCchHH
Confidence 45678889999999998765555444333
No 477
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=43.29 E-value=20 Score=23.52 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=21.7
Q ss_pred CcCCCCHHHHHHHHHhcCCcEEEeecc
Q 035377 13 PRIFHKAPQLIATTVNSGVLHFAVNGV 39 (66)
Q Consensus 13 ~~~~~~~~~~~~~~~~~gv~~~~~~~~ 39 (66)
+.+.++.++++++..+.|+++++++..
T Consensus 239 ~WL~P~t~~~l~~L~~~g~k~iiv~pi 265 (320)
T COG0276 239 PWLQPYTDDLLEELGEKGVKKIIVVPI 265 (320)
T ss_pred CCCCCCHHHHHHHHHhcCCCeEEEECC
Confidence 345678999999999999998776654
No 478
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=43.26 E-value=37 Score=22.69 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHhcCCcEEEeeccC
Q 035377 17 HKAPQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
++..+.+++++++| .++++|||+
T Consensus 236 ~eta~~i~~~k~~G-gRIiaVGTT 258 (348)
T COG0809 236 QETADAINAAKARG-GRIIAVGTT 258 (348)
T ss_pred HHHHHHHHHHHHcC-CeEEEEcch
Confidence 35667888899988 789999985
No 479
>PRK08445 hypothetical protein; Provisional
Probab=43.22 E-value=92 Score=20.46 Aligned_cols=41 Identities=10% Similarity=0.193 Sum_probs=23.7
Q ss_pred CHHHHHHHHHhcCCcEEEeecc-Chh-hH---HHHH-HHHHhCCCeE
Q 035377 18 KAPQLIATTVNSGVLHFAVNGV-SEE-DW---NLVK-DMSERHPSVI 58 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~-~~~-~~---~~~~-~l~~~~~~i~ 58 (66)
++.+.++++.+.|...++.+|. .+. +. .+++ .+.+.+|.+.
T Consensus 77 eI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~ 123 (348)
T PRK08445 77 EIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTIT 123 (348)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 4555566778889988887763 222 23 3333 3445577643
No 480
>PLN02485 oxidoreductase
Probab=43.09 E-value=50 Score=21.28 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
.+++.+.+++.|+-.+..=|.+.+..+++.+++++
T Consensus 35 ~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~ 69 (329)
T PLN02485 35 VRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHE 69 (329)
T ss_pred HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 34566677888887777777887777777777665
No 481
>PRK01060 endonuclease IV; Provisional
Probab=42.94 E-value=79 Score=19.44 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=32.3
Q ss_pred CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeecc----------ChhhHHHHHHHHHhCC
Q 035377 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGV----------SEEDWNLVKDMSERHP 55 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~----------~~~~~~~~~~l~~~~~ 55 (66)
|+.+=+|+.+ .+++++.++.+.+.|++.+=+... +.++.+++.++.+++.
T Consensus 1 ~~~~g~~~~~-----~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~g 60 (281)
T PRK01060 1 MKLIGAHVSA-----AGGLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYG 60 (281)
T ss_pred CCeEEEeeec-----CCCHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 5566677665 345899999999999987633211 2234455666776663
No 482
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=42.89 E-value=70 Score=19.70 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHHHHHH-hcCCc--EEEeeccChhhHHHHHHHHHhCCCeEeeeeec
Q 035377 19 APQLIATTV-NSGVL--HFAVNGVSEEDWNLVKDMSERHPSVIPCFGVH 64 (66)
Q Consensus 19 ~~~~~~~~~-~~gv~--~~~~~~~~~~~~~~~~~l~~~~~~i~~~~GiH 64 (66)
+..++++.. +.+|+ ++.+.|.+---. .+..|+-.||.+|.++++|
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~-ma~~la~~~pd~faa~a~~ 128 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGM-MANVLACAYPDLFAAVAVV 128 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHH-HHHHHHHhCCccceEEEee
Confidence 344554432 34554 688888765543 3456788899999999986
No 483
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=42.86 E-value=21 Score=21.07 Aligned_cols=42 Identities=12% Similarity=0.051 Sum_probs=27.8
Q ss_pred HHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC-CCeEeeeee
Q 035377 22 LIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH-PSVIPCFGV 63 (66)
Q Consensus 22 ~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~Gi 63 (66)
++-.|.+.|+..+...|.+.+...+.+.+-+.+ +-...++|+
T Consensus 131 l~LaA~~~Glgs~~~~g~~~~~v~~~l~ip~~~~~v~~ialGy 173 (195)
T PRK05365 131 LILAARALGLDAGPMSGFDAAAVDAEFFAGTTWKSNFLVNIGY 173 (195)
T ss_pred HHHHHHHcCCccCCccccCHHHHHHHhCCCCCeeEEEEEEeCC
Confidence 667788899988776677776666666554333 224557775
No 484
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=42.72 E-value=59 Score=24.70 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=23.6
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDW 44 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~ 44 (66)
+..++..+.+++++++||+-+++.|-++...
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA 676 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETA 676 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHH
Confidence 3456788999999999998777777554433
No 485
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=42.65 E-value=63 Score=18.22 Aligned_cols=34 Identities=15% Similarity=0.030 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVK 48 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~ 48 (66)
..+...++++.+++.|+.-.++.+......+..+
T Consensus 73 l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l 106 (188)
T TIGR01489 73 IDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVL 106 (188)
T ss_pred CCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH
Confidence 3456888999999999876666555554444443
No 486
>COG0400 Predicted esterase [General function prediction only]
Probab=42.62 E-value=79 Score=19.32 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=27.7
Q ss_pred HHHHHHHhcCC--cEEEeeccChhhHHHHHHHHHhCCC-eEeeeeecC
Q 035377 21 QLIATTVNSGV--LHFAVNGVSEEDWNLVKDMSERHPS-VIPCFGVHP 65 (66)
Q Consensus 21 ~~~~~~~~~gv--~~~~~~~~~~~~~~~~~~l~~~~~~-i~~~~GiHP 65 (66)
.+...+.+.|+ ++++.+|.+-.-. -++.+.-++|. ...++++||
T Consensus 86 ~l~~~~~~~gi~~~~ii~~GfSqGA~-ial~~~l~~~~~~~~ail~~g 132 (207)
T COG0400 86 FLEELAEEYGIDSSRIILIGFSQGAN-IALSLGLTLPGLFAGAILFSG 132 (207)
T ss_pred HHHHHHHHhCCChhheEEEecChHHH-HHHHHHHhCchhhccchhcCC
Confidence 34456667788 6798999764433 34555556665 445777765
No 487
>PRK11579 putative oxidoreductase; Provisional
Probab=42.57 E-value=91 Score=20.03 Aligned_cols=14 Identities=0% Similarity=0.017 Sum_probs=6.8
Q ss_pred ChhhHHHHHHHHHh
Q 035377 40 SEEDWNLVKDMSER 53 (66)
Q Consensus 40 ~~~~~~~~~~l~~~ 53 (66)
+.++.+++.+++++
T Consensus 100 t~~ea~~l~~~a~~ 113 (346)
T PRK11579 100 TLSQARELDALAKS 113 (346)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444455555444
No 488
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=42.56 E-value=70 Score=24.20 Aligned_cols=33 Identities=6% Similarity=0.013 Sum_probs=25.6
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhHHH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNL 46 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~ 46 (66)
+.+++..+.+++++++|++-.++.|-++.....
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~ 688 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVH 688 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 456789999999999999988887866554433
No 489
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=42.44 E-value=81 Score=19.39 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHH
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMS 51 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~ 51 (66)
..+...++++..++.|+.-.++.+...+.....++..
T Consensus 102 ~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~ 138 (267)
T PRK13478 102 PIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA 138 (267)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH
Confidence 4567889999999999887666665555555555543
No 490
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=42.36 E-value=71 Score=18.74 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeeccC
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
..+...+++++.++.|+.-.++.+..
T Consensus 86 ~~~g~~~~l~~l~~~g~~~~IvS~~~ 111 (219)
T TIGR00338 86 LTEGAEELVKTLKEKGYKVAVISGGF 111 (219)
T ss_pred cCCCHHHHHHHHHHCCCEEEEECCCc
Confidence 45678899999999998765555443
No 491
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=42.32 E-value=31 Score=22.96 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=17.9
Q ss_pred CHHHHHHHHHhcCCcEEEeeccC
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVS 40 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~ 40 (66)
+..+.++++++.| .++++|||+
T Consensus 236 ~ta~~i~~ak~~G-~RIiAVGTT 257 (344)
T TIGR00113 236 ETVEALNKTRENG-GRIIAVGTT 257 (344)
T ss_pred HHHHHHHHHHHcC-CeEEEEccc
Confidence 4567888999888 689999985
No 492
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=42.27 E-value=37 Score=22.70 Aligned_cols=22 Identities=5% Similarity=0.036 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHhcCCcEEEeec
Q 035377 17 HKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 17 ~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
-|.+++++.++++|.+.++.++
T Consensus 81 fD~~~Wa~~~k~AGakY~vlTa 102 (384)
T smart00812 81 FDPEEWADLFKKAGAKYVVLTA 102 (384)
T ss_pred CCHHHHHHHHHHcCCCeEEeee
Confidence 3789999999999999988654
No 493
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=42.19 E-value=37 Score=18.91 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHhcCCcEEEeeccChh---hHHHHHHHHHhCC
Q 035377 16 FHKAPQLIATTVNSGVLHFAVNGVSEE---DWNLVKDMSERHP 55 (66)
Q Consensus 16 ~~~~~~~~~~~~~~gv~~~~~~~~~~~---~~~~~~~l~~~~~ 55 (66)
.++.+++.+.+++.+|+.+++ +.... ..+++++.+++.+
T Consensus 127 lg~~~~l~~~~~~~~id~v~i-al~~~~~~~i~~ii~~~~~~~ 168 (175)
T PF13727_consen 127 LGDLDDLPELVREHDIDEVII-ALPWSEEEQIKRIIEELENHG 168 (175)
T ss_dssp E--GGGHHHHHHHHT--EEEE---TTS-HHHHHHHHHHHHTTT
T ss_pred EcCHHHHHHHHHhCCCCEEEE-EcCccCHHHHHHHHHHHHhCC
Confidence 356788888888999997754 33333 3444555555543
No 494
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=42.17 E-value=56 Score=21.25 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 19 APQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 19 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
.+++.+.+++.|+-.++.=|...+..+++.+++++
T Consensus 52 ~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~ 86 (337)
T PLN02639 52 VQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHE 86 (337)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 34666777888887777778888877777776665
No 495
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=42.17 E-value=61 Score=18.83 Aligned_cols=35 Identities=6% Similarity=0.061 Sum_probs=21.1
Q ss_pred CHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHh
Q 035377 18 KAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSER 53 (66)
Q Consensus 18 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~ 53 (66)
+..+..+++++.||. +..+|...-+...+.+++..
T Consensus 128 ~~~~~~~~~~~~gi~-i~~vgig~~~~~~L~~IA~~ 162 (186)
T cd01480 128 GIEKAVNEADHLGIK-IFFVAVGSQNEEPLSRIACD 162 (186)
T ss_pred hHHHHHHHHHHCCCE-EEEEecCccchHHHHHHHcC
Confidence 345667778888887 44555544444555566553
No 496
>PTZ00273 oxidase reductase; Provisional
Probab=42.10 E-value=58 Score=20.90 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCcEEEeeccChhhHHHHHHHHHhC
Q 035377 20 PQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERH 54 (66)
Q Consensus 20 ~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~~~~ 54 (66)
+++.+.+++.|+-.+..-|...+..+++.++++++
T Consensus 27 ~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~f 61 (320)
T PTZ00273 27 KQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTF 61 (320)
T ss_pred HHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34556777788877777778877777777776653
No 497
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=42.10 E-value=54 Score=18.52 Aligned_cols=49 Identities=18% Similarity=0.095 Sum_probs=25.1
Q ss_pred CceEeeccCCCCCcCCCCHHHHHHHHHhcCCcEEEeeccChhhHHHHHHHH
Q 035377 1 MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMS 51 (66)
Q Consensus 1 m~~iDsH~Hl~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~l~ 51 (66)
|.=||.+..-.. ....-.-.+++++...|- ++++.+.+.+..+.+-++.
T Consensus 1 Mt~v~Fy~l~~~-~~~~~~c~L~~k~~~~g~-rv~V~~~d~~~a~~lD~~L 49 (137)
T PF04364_consen 1 MTRVDFYHLSSD-DLERFACRLAEKAYRQGQ-RVLVLCPDEEQAEALDELL 49 (137)
T ss_dssp -EEEEEEE-S-----HHHHHHHHHHHHHTT---EEEE-SSHHHHHHHHHHT
T ss_pred CCeEEEEEcCCC-cHHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHH
Confidence 455666644332 111224478889999984 4666666766666655543
No 498
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=42.08 E-value=57 Score=17.57 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeec
Q 035377 15 IFHKAPQLIATTVNSGVLHFAVNG 38 (66)
Q Consensus 15 ~~~~~~~~~~~~~~~gv~~~~~~~ 38 (66)
..++..++++++++.|+.-.++.+
T Consensus 26 ~~~~v~~~l~~L~~~g~~l~i~Sn 49 (132)
T TIGR01662 26 LYPEVPDALAELKEAGYKVVIVTN 49 (132)
T ss_pred eCCCHHHHHHHHHHCCCEEEEEEC
Confidence 346788999999999987665544
No 499
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=42.03 E-value=56 Score=24.55 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=23.7
Q ss_pred cCCCCHHHHHHHHHhcCCcEEEeeccChhhH
Q 035377 14 RIFHKAPQLIATTVNSGVLHFAVNGVSEEDW 44 (66)
Q Consensus 14 ~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~ 44 (66)
+..++..+.+++++++|+.-+++.|-++...
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta 598 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITA 598 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 3456788999999999998777777655544
No 500
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=42.01 E-value=8.2 Score=25.55 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=8.8
Q ss_pred ceEeeccCCCC
Q 035377 2 KLFDAHCHLQD 12 (66)
Q Consensus 2 ~~iDsH~Hl~~ 12 (66)
.+||+|+|++.
T Consensus 58 gfvn~H~H~~~ 68 (421)
T COG0402 58 GFVNAHTHLDQ 68 (421)
T ss_pred CccccccchHH
Confidence 38999999864
Done!