RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 035377
         (66 letters)



>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
          {Escherichia coli [TaxId: 562]}
          Length = 260

 Score = 49.2 bits (116), Expect = 2e-09
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62
          +FD   +L   +       ++A   ++GV    + G +  +    + ++ ++ S     G
Sbjct: 1  MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAG 60

Query: 63 VHPW 66
          VHP 
Sbjct: 61 VHPH 64


>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
          {Escherichia coli [TaxId: 562]}
          Length = 259

 Score = 47.7 bits (112), Expect = 5e-09
 Identities = 14/66 (21%), Positives = 24/66 (36%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPC 60
           +  D HCH   P         +     +GV    V     E++  V  ++E +  +   
Sbjct: 3  CRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAA 62

Query: 61 FGVHPW 66
           G+HP 
Sbjct: 63 LGLHPG 68


>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 260

 Score = 44.1 bits (103), Expect = 1e-07
 Identities = 15/64 (23%), Positives = 26/64 (40%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSVIPCFG 62
          + D H HL   +       +I++   + +      GV+ ED     D+S+    +    G
Sbjct: 5  MVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVG 64

Query: 63 VHPW 66
          VHP 
Sbjct: 65 VHPH 68


>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
          {Escherichia coli [TaxId: 562]}
          Length = 265

 Score = 41.9 bits (97), Expect = 6e-07
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 1  MKLFDAHCHLQDPR---IFHKAPQLIATTVNSGVLHFAVNGVSEEDWNLVKDMSERHPSV 57
          M L D+HCHL       +      ++A      V        +   +  ++D+     +V
Sbjct: 1  MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNV 60

Query: 58 IPCFGVHPW 66
          +   GVHP 
Sbjct: 61 VFSCGVHPL 69


>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii
          [TaxId: 329]}
          Length = 330

 Score = 22.6 bits (47), Expect = 4.7
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 3  LFDAHCHLQDPRIFHKAPQLIAT 25
            D H H++      ++    AT
Sbjct: 2  GIDVHTHVETVSFNTQSADTFAT 24


>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493
          {Bacillus halodurans [TaxId: 86665]}
          Length = 415

 Score = 22.6 bits (48), Expect = 4.8
 Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 1/27 (3%)

Query: 1  MKLFDAHCHLQDPRIFHKAPQLIATTV 27
            + D H HL     F +        +
Sbjct: 19 QPVTDMHTHL-FSPNFGEILLWDIDEL 44


>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens
          [TaxId: 43663]}
          Length = 325

 Score = 22.7 bits (47), Expect = 5.5
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 3  LFDAHCHLQDPRIFHKA 19
          + D H H+ D  + ++ 
Sbjct: 2  VVDEHVHIIDMDLKNRY 18


>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 310

 Score = 22.7 bits (47), Expect = 5.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 3  LFDAHCHLQDPRIFHK 18
            D H HL+DP   +K
Sbjct: 2  FIDIHVHLRDPGQTYK 17


>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 451

 Score = 22.2 bits (47), Expect = 6.2
 Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 1/17 (5%)

Query: 1  MKLFDAHCHLQDPRIFH 17
          + + D H HL D +   
Sbjct: 25 LPIVDPHNHL-DAKDIV 40


>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2
          {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}
          Length = 384

 Score = 21.9 bits (45), Expect = 8.9
 Identities = 5/11 (45%), Positives = 7/11 (63%)

Query: 3  LFDAHCHLQDP 13
            DAH H+ +P
Sbjct: 2  GIDAHVHVDEP 12


>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId:
          275]}
          Length = 335

 Score = 21.8 bits (45), Expect = 9.9
 Identities = 4/11 (36%), Positives = 5/11 (45%)

Query: 3  LFDAHCHLQDP 13
            D H H+  P
Sbjct: 1  FIDPHVHIYLP 11


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.470 

Gapped
Lambda     K      H
   0.267   0.0315    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 259,925
Number of extensions: 8429
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 19
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (23.1 bits)