Query 035382
Match_columns 66
No_of_seqs 126 out of 519
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02969 PRX_like1 Peroxiredoxi 99.2 6.3E-11 1.4E-15 76.5 5.7 53 8-60 119-171 (171)
2 PTZ00253 tryparedoxin peroxida 97.6 2.4E-05 5.3E-10 52.2 1.5 50 11-64 125-181 (199)
3 smart00685 DM14 Repeats in fly 83.5 1.4 3E-05 25.1 2.5 23 31-53 35-57 (59)
4 PF05225 HTH_psq: helix-turn-h 67.9 6.6 0.00014 20.7 2.3 16 29-44 1-16 (45)
5 PHA02516 W baseplate wedge sub 65.6 9 0.00019 23.3 2.9 31 29-59 11-41 (103)
6 COG1311 HYS2 Archaeal DNA poly 63.0 4 8.6E-05 31.8 1.2 42 8-50 357-399 (481)
7 KOG1507 Nucleosome assembly pr 60.5 4 8.8E-05 30.7 0.8 15 50-64 244-258 (358)
8 PRK09192 acyl-CoA synthetase; 53.6 12 0.00026 27.8 2.3 33 8-40 451-483 (579)
9 cd03016 PRX_1cys Peroxiredoxin 53.6 30 0.00064 23.0 4.0 46 8-64 126-171 (203)
10 PRK13190 putative peroxiredoxi 53.5 30 0.00064 23.1 4.0 46 8-64 126-171 (202)
11 COG3628 Phage baseplate assemb 51.6 30 0.00065 22.3 3.6 32 28-59 17-48 (116)
12 PRK08315 AMP-binding domain pr 50.7 15 0.00032 26.8 2.4 33 8-40 440-472 (559)
13 PRK06334 long chain fatty acid 50.1 14 0.0003 27.4 2.2 34 8-41 423-456 (539)
14 COG0117 RibD Pyrimidine deamin 49.9 26 0.00056 23.4 3.2 31 29-60 6-36 (146)
15 PLN03051 acyl-activating enzym 49.7 16 0.00035 26.6 2.5 32 8-39 370-401 (499)
16 PRK05851 long-chain-fatty-acid 49.6 13 0.00029 27.2 2.0 33 8-40 408-440 (525)
17 PRK08279 long-chain-acyl-CoA s 49.6 13 0.00029 27.6 2.0 33 8-40 452-484 (600)
18 PHA00415 25 baseplate wedge su 49.4 23 0.0005 22.7 2.9 30 29-58 29-58 (131)
19 cd03015 PRX_Typ2cys Peroxiredo 49.4 41 0.00088 21.4 4.1 45 8-63 129-173 (173)
20 PHA03303 envelope glycoprotein 49.1 16 0.00035 24.7 2.1 29 29-57 119-147 (159)
21 TIGR01217 ac_ac_CoA_syn acetoa 46.6 17 0.00038 27.8 2.3 33 8-40 512-544 (652)
22 PRK07824 O-succinylbenzoic aci 45.1 15 0.00033 25.3 1.7 33 8-40 246-278 (358)
23 PRK07656 long-chain-fatty-acid 44.9 20 0.00044 25.5 2.3 33 8-40 405-437 (513)
24 PRK03640 O-succinylbenzoic aci 44.6 17 0.00037 25.8 1.9 33 8-40 373-405 (483)
25 PTZ00007 (NAP-L) nucleosome as 44.4 11 0.00024 28.0 0.9 14 51-64 179-192 (337)
26 cd01271 Fe65_C Fe65 C-terminal 43.8 34 0.00073 22.2 3.0 33 8-45 3-35 (124)
27 PRK09029 O-succinylbenzoic aci 43.4 19 0.0004 25.7 1.9 33 8-40 344-376 (458)
28 TIGR03098 ligase_PEP_1 acyl-Co 43.2 24 0.00051 25.3 2.4 33 8-40 407-439 (515)
29 PRK10524 prpE propionyl-CoA sy 42.5 20 0.00043 27.0 2.0 33 8-40 486-518 (629)
30 TIGR02316 propion_prpE propion 42.0 20 0.00044 27.1 2.0 33 8-40 485-517 (628)
31 PRK09274 peptide synthase; Pro 40.8 16 0.00035 26.7 1.3 33 8-40 433-465 (552)
32 PF00383 dCMP_cyt_deam_1: Cyti 40.8 30 0.00064 20.0 2.2 30 29-61 4-33 (102)
33 PRK03584 acetoacetyl-CoA synth 40.6 25 0.00055 26.7 2.3 32 8-39 511-542 (655)
34 PF13590 DUF4136: Domain of un 40.2 65 0.0014 19.6 3.8 36 8-45 114-149 (151)
35 PRK06145 acyl-CoA synthetase; 39.2 23 0.00049 25.4 1.8 33 8-40 386-418 (497)
36 PRK13390 acyl-CoA synthetase; 39.1 33 0.00072 24.7 2.7 33 8-40 392-424 (501)
37 TIGR02372 4_coum_CoA_lig 4-cou 39.1 21 0.00045 26.1 1.6 33 8-40 288-320 (386)
38 TIGR02188 Ac_CoA_lig_AcsA acet 38.9 24 0.00053 26.5 2.0 33 8-40 488-520 (625)
39 PRK07769 long-chain-fatty-acid 38.9 27 0.00058 26.3 2.2 32 8-39 476-507 (631)
40 PRK07788 acyl-CoA synthetase; 38.8 24 0.00053 25.8 2.0 33 8-40 440-472 (549)
41 PRK10382 alkyl hydroperoxide r 38.7 50 0.0011 22.0 3.3 47 8-64 128-174 (187)
42 PRK00174 acetyl-CoA synthetase 38.3 26 0.00057 26.4 2.1 33 8-40 496-528 (637)
43 PRK07514 malonyl-CoA synthase; 38.3 23 0.0005 25.3 1.8 33 8-40 390-422 (504)
44 PRK08162 acyl-CoA synthetase; 38.1 22 0.00048 25.9 1.7 32 8-39 429-460 (545)
45 PRK06155 crotonobetaine/carnit 38.1 22 0.00047 26.3 1.6 33 8-40 413-445 (542)
46 PRK08751 putative long-chain f 37.8 28 0.0006 25.6 2.1 33 8-40 450-482 (560)
47 PRK12583 acyl-CoA synthetase; 37.8 26 0.00056 25.5 2.0 32 8-39 441-472 (558)
48 PLN02860 o-succinylbenzoate-Co 37.0 28 0.00062 25.7 2.1 33 8-40 427-459 (563)
49 PRK05850 acyl-CoA synthetase; 36.5 32 0.0007 25.4 2.3 34 8-41 449-482 (578)
50 PRK07445 O-succinylbenzoic aci 36.3 26 0.00057 25.5 1.8 33 8-40 337-369 (452)
51 PRK07798 acyl-CoA synthetase; 36.2 32 0.0007 24.6 2.2 33 8-40 421-453 (533)
52 PRK08633 2-acyl-glycerophospho 36.0 35 0.00076 27.3 2.6 34 8-41 1032-1065(1146)
53 PRK06087 short chain acyl-CoA 35.9 44 0.00096 24.4 2.9 33 8-40 423-455 (547)
54 PRK12406 long-chain-fatty-acid 35.7 29 0.00064 25.0 2.0 32 8-39 392-423 (509)
55 PRK07768 long-chain-fatty-acid 35.6 30 0.00065 25.3 2.0 33 8-40 427-459 (545)
56 PLN03102 acyl-activating enzym 35.5 31 0.00066 25.8 2.1 33 8-40 433-465 (579)
57 PRK07638 acyl-CoA synthetase; 35.3 33 0.00071 24.6 2.2 33 8-40 374-406 (487)
58 PRK06839 acyl-CoA synthetase; 35.3 24 0.00053 25.1 1.5 33 8-40 384-416 (496)
59 PRK09088 acyl-CoA synthetase; 35.3 25 0.00054 25.2 1.5 33 8-40 374-406 (488)
60 PRK08316 acyl-CoA synthetase; 35.3 28 0.00061 24.9 1.8 33 8-40 408-440 (523)
61 PRK04813 D-alanine--poly(phosp 35.2 26 0.00056 25.0 1.6 33 8-40 388-420 (503)
62 TIGR03443 alpha_am_amid L-amin 35.0 25 0.00054 29.2 1.6 33 8-40 691-723 (1389)
63 PTZ00237 acetyl-CoA synthetase 34.9 31 0.00068 26.4 2.1 33 8-40 505-537 (647)
64 PRK07470 acyl-CoA synthetase; 34.6 24 0.00052 25.6 1.4 33 8-40 407-439 (528)
65 PF15603 Imm45: Immunity prote 34.6 87 0.0019 18.7 3.6 32 10-41 37-69 (82)
66 PRK06814 acylglycerophosphoeth 34.5 34 0.00074 27.7 2.3 34 8-41 1023-1056(1140)
67 PRK07008 long-chain-fatty-acid 33.9 29 0.00064 25.5 1.7 32 8-39 422-453 (539)
68 PF00956 NAP: Nucleosome assem 33.8 14 0.0003 25.4 -0.0 14 51-64 148-161 (244)
69 PRK10252 entF enterobactin syn 33.5 28 0.0006 28.5 1.6 33 8-40 850-882 (1296)
70 KOG1175 Acyl-CoA synthetase [L 33.1 49 0.0011 26.6 2.9 31 8-38 488-518 (626)
71 PRK06164 acyl-CoA synthetase; 33.0 35 0.00077 24.8 2.0 33 8-40 419-451 (540)
72 PRK05677 long-chain-fatty-acid 32.9 31 0.00068 25.5 1.8 33 8-40 446-478 (562)
73 PRK08308 acyl-CoA synthetase; 32.3 36 0.00078 24.0 1.9 32 8-39 304-335 (414)
74 cd01790 Herp_N Homocysteine-re 31.9 26 0.00056 20.8 1.0 10 8-17 45-54 (79)
75 PRK12476 putative fatty-acid-- 31.5 49 0.0011 24.9 2.6 32 8-39 488-519 (612)
76 PLN02246 4-coumarate--CoA liga 31.2 27 0.00057 25.6 1.1 33 8-40 425-457 (537)
77 PLN03052 acetate--CoA ligase; 30.9 44 0.00095 26.4 2.4 31 8-38 602-632 (728)
78 PRK08008 caiC putative crotono 30.9 35 0.00076 24.6 1.7 32 8-39 411-442 (517)
79 cd01216 Fe65 Fe65 Phosphotyros 30.6 83 0.0018 19.8 3.2 33 8-45 3-35 (123)
80 PRK13295 cyclohexanecarboxylat 30.6 44 0.00095 24.5 2.2 32 8-39 432-463 (547)
81 PLN02479 acetate-CoA ligase 30.4 45 0.00098 24.7 2.2 32 8-39 443-474 (567)
82 PF07660 STN: Secretin and Ton 30.1 36 0.00078 17.5 1.3 20 29-48 21-40 (52)
83 PRK13382 acyl-CoA synthetase; 29.9 34 0.00073 25.2 1.5 33 8-40 429-461 (537)
84 PRK07867 acyl-CoA synthetase; 29.5 31 0.00067 25.4 1.3 33 8-40 394-426 (529)
85 PLN02861 long-chain-fatty-acid 29.3 54 0.0012 25.2 2.6 32 8-39 506-538 (660)
86 TIGR01733 AA-adenyl-dom amino 28.6 31 0.00067 23.8 1.0 32 8-39 368-399 (408)
87 PRK14651 UDP-N-acetylenolpyruv 28.5 81 0.0018 22.6 3.2 32 29-61 171-202 (273)
88 PRK06178 acyl-CoA synthetase; 28.4 42 0.00092 24.7 1.8 32 8-39 455-486 (567)
89 TIGR02275 DHB_AMP_lig 2,3-dihy 28.3 47 0.001 24.2 2.0 33 8-40 421-453 (527)
90 COG0365 Acs Acyl-coenzyme A sy 28.2 55 0.0012 25.6 2.5 34 8-41 409-442 (528)
91 PLN02654 acetate-CoA ligase 28.2 50 0.0011 25.4 2.2 33 8-40 526-558 (666)
92 PRK08974 long-chain-fatty-acid 28.2 44 0.00096 24.5 1.9 33 8-40 445-477 (560)
93 PRK05605 long-chain-fatty-acid 28.1 56 0.0012 24.1 2.4 33 8-40 458-490 (573)
94 PHA02919 host-range protein; P 27.9 36 0.00077 22.9 1.2 16 48-63 22-37 (150)
95 PRK04319 acetyl-CoA synthetase 27.9 47 0.001 24.6 2.0 33 8-40 445-477 (570)
96 PF00926 DHBP_synthase: 3,4-di 27.9 40 0.00086 23.1 1.5 16 33-48 1-16 (194)
97 TIGR01923 menE O-succinylbenzo 27.8 45 0.00097 23.3 1.8 32 8-39 333-364 (436)
98 PRK08314 long-chain-fatty-acid 27.4 40 0.00086 24.5 1.5 33 8-40 429-461 (546)
99 PRK06018 putative acyl-CoA syn 27.2 51 0.0011 24.2 2.0 33 8-40 423-455 (542)
100 PRK07529 AMP-binding domain pr 27.1 54 0.0012 24.9 2.2 33 8-40 458-490 (632)
101 KOG4117 Heat shock factor bind 27.0 48 0.001 19.6 1.5 29 14-48 40-68 (73)
102 PRK06060 acyl-CoA synthetase; 26.8 48 0.001 25.4 1.9 33 8-40 378-410 (705)
103 PRK06187 long-chain-fatty-acid 26.7 51 0.0011 23.4 1.9 32 8-39 408-439 (521)
104 PRK10946 entE enterobactin syn 26.2 57 0.0012 23.9 2.2 33 8-40 422-454 (536)
105 PRK06710 long-chain-fatty-acid 26.2 40 0.00087 24.8 1.3 33 8-40 444-476 (563)
106 TIGR00296 uncharacterized prot 25.7 1.5E+02 0.0033 20.3 4.0 31 31-61 14-51 (200)
107 PLN02614 long-chain acyl-CoA s 25.5 65 0.0014 24.9 2.4 32 8-39 509-541 (666)
108 PF10480 ICAP-1_inte_bdg: Beta 25.5 1.4E+02 0.0029 21.0 3.8 42 7-48 61-103 (200)
109 PRK08043 bifunctional acyl-[ac 25.4 64 0.0014 25.0 2.4 33 8-40 604-636 (718)
110 PRK08276 long-chain-fatty-acid 25.4 54 0.0012 23.6 1.8 32 8-39 382-413 (502)
111 cd06401 PB1_TFG The PB1 domain 25.4 1.6E+02 0.0035 17.7 4.6 48 10-63 4-51 (81)
112 PF01871 AMMECR1: AMMECR1; In 25.0 57 0.0012 21.7 1.8 32 31-62 3-41 (171)
113 PF10694 DUF2500: Protein of u 24.6 49 0.0011 20.2 1.3 13 3-16 91-103 (110)
114 PLN02574 4-coumarate--CoA liga 24.5 49 0.0011 24.5 1.5 33 8-40 443-475 (560)
115 PF02873 MurB_C: UDP-N-acetyle 24.5 34 0.00074 21.1 0.6 33 31-63 2-35 (105)
116 TIGR02661 MauD methylamine deh 24.4 1.5E+02 0.0032 19.3 3.7 28 8-45 156-183 (189)
117 PLN02330 4-coumarate--CoA liga 24.3 46 0.001 24.4 1.4 33 8-40 430-462 (546)
118 PF03287 Pox_C7_F8A: Poxvirus 24.2 46 0.00099 22.3 1.2 16 48-63 23-38 (149)
119 PRK01792 ribB 3,4-dihydroxy-2- 23.9 51 0.0011 23.1 1.4 18 31-48 14-31 (214)
120 PRK00014 ribB 3,4-dihydroxy-2- 23.8 72 0.0016 22.6 2.2 19 31-49 19-37 (230)
121 PRK05773 3,4-dihydroxy-2-butan 23.7 51 0.0011 23.1 1.4 16 33-48 3-18 (219)
122 PRK05620 long-chain-fatty-acid 23.4 61 0.0013 24.0 1.9 32 8-39 443-474 (576)
123 TIGR03208 cyc_hxne_CoA_lg cycl 23.2 50 0.0011 24.1 1.4 33 8-40 430-462 (538)
124 PRK13599 putative peroxiredoxi 22.8 2.2E+02 0.0047 19.3 4.4 44 8-62 128-171 (215)
125 PF04260 DUF436: Protein of un 22.8 27 0.00058 23.9 -0.1 27 32-58 2-28 (172)
126 cd01212 JIP JNK-interacting pr 22.4 1.3E+02 0.0028 19.6 3.1 46 8-58 4-49 (148)
127 PF03633 Glyco_hydro_65C: Glyc 22.3 41 0.0009 17.7 0.6 10 8-17 11-20 (54)
128 TIGR00506 ribB 3,4-dihydroxy-2 22.2 57 0.0012 22.5 1.4 18 32-49 4-21 (199)
129 PF06296 DUF1044: Protein of u 22.0 1.8E+02 0.0039 18.5 3.6 30 28-61 18-47 (120)
130 COG1941 FrhG Coenzyme F420-red 21.9 1.3E+02 0.0028 21.7 3.2 23 27-49 137-159 (247)
131 PTZ00216 acyl-CoA synthetase; 21.9 77 0.0017 24.6 2.2 32 8-39 549-581 (700)
132 PTZ00008 (NAP-S) nucleosome as 21.8 35 0.00076 23.1 0.3 13 52-64 111-123 (185)
133 PLN02736 long-chain acyl-CoA s 21.7 88 0.0019 23.8 2.5 32 8-39 500-532 (651)
134 PRK07059 Long-chain-fatty-acid 21.6 67 0.0014 23.6 1.7 33 8-40 448-480 (557)
135 PRK13388 acyl-CoA synthetase; 21.5 57 0.0012 24.1 1.4 33 8-40 393-425 (540)
136 PF11789 zf-Nse: Zinc-finger o 21.4 61 0.0013 17.8 1.2 24 32-57 34-57 (57)
137 smart00506 A1pp Appr-1"-p proc 21.4 70 0.0015 19.0 1.6 31 28-58 88-121 (133)
138 cd03018 PRX_AhpE_like Peroxire 21.4 1.2E+02 0.0026 18.1 2.7 26 8-38 123-148 (149)
139 PRK07787 acyl-CoA synthetase; 21.3 59 0.0013 23.3 1.4 33 8-40 363-396 (471)
140 PF03784 Cyclotide: Cyclotide 21.3 42 0.00091 16.7 0.5 12 50-61 14-25 (30)
141 PRK12492 long-chain-fatty-acid 21.2 83 0.0018 23.2 2.2 32 8-39 454-485 (562)
142 TIGR01734 D-ala-DACP-lig D-ala 21.1 58 0.0013 23.3 1.3 31 10-40 388-418 (502)
143 PRK05857 acyl-CoA synthetase; 21.1 81 0.0018 23.2 2.1 32 8-39 415-446 (540)
144 PRK07786 long-chain-fatty-acid 21.0 82 0.0018 23.1 2.1 32 8-39 412-443 (542)
145 PRK00910 ribB 3,4-dihydroxy-2- 21.0 62 0.0014 22.7 1.4 19 31-49 15-33 (218)
146 PF08368 FAST_2: FAST kinase-l 21.0 1.5E+02 0.0033 17.3 3.0 32 29-60 49-81 (93)
147 PHA02854 putative host range p 20.8 59 0.0013 22.4 1.2 19 45-63 20-38 (178)
148 PF01661 Macro: Macro domain; 20.7 59 0.0013 18.8 1.1 32 27-58 72-106 (118)
149 PF12651 RHH_3: Ribbon-helix-h 20.7 97 0.0021 16.0 1.9 14 29-42 28-41 (44)
150 PF09421 FRQ: Frequency clock 20.5 1E+02 0.0022 26.4 2.7 33 26-63 493-525 (989)
151 cd01213 tensin Tensin Phosphot 20.4 2.3E+02 0.005 18.4 3.9 40 3-48 3-42 (138)
152 PHA02811 putative host range p 20.2 61 0.0013 22.6 1.2 19 45-63 20-38 (197)
No 1
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.17 E-value=6.3e-11 Score=76.47 Aligned_cols=53 Identities=58% Similarity=1.097 Sum_probs=46.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeee
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw 60 (66)
+++|+|+|.+++.+.......+.++|++||+++|+|+.++.++|++.||+++|
T Consensus 119 ~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 119 DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 67799999999875432235688999999999999999999999999999999
No 2
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.63 E-value=2.4e-05 Score=52.16 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=37.9
Q ss_pred EEEeee--ccCCCC-----CCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 11 LVYHGQ--FDDSRP-----SNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 11 L~Y~Gr--IDD~~~-----~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+.|+|. ||.+.. ..+.+ ...+++++|+.|.+.+.+.. +++||+|+|++++
T Consensus 125 ~~~r~~fiID~~G~i~~~~~~~~~-~~r~~~e~l~~l~a~~~~~~---~~~~cp~~w~~g~ 181 (199)
T PTZ00253 125 VAYRGLFIIDPKGMLRQITVNDMP-VGRNVEEVLRLLEAFQFVEK---HGEVCPANWKKGD 181 (199)
T ss_pred ceEEEEEEECCCCEEEEEEecCCC-CCCCHHHHHHHHHhhhhHHh---cCCEeCCCCCcCC
Confidence 468888 886633 12223 45689999999999999886 5899999998764
No 3
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=83.47 E-value=1.4 Score=25.15 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCC
Q 035382 31 RDIRLAIECVLSGQPVSSNQKPS 53 (66)
Q Consensus 31 ~~L~~Ai~allaG~~v~~~~t~s 53 (66)
.-+.+||++.-+|++|.....|+
T Consensus 35 K~~~~~I~~~~aG~pVd~~~lP~ 57 (59)
T smart00685 35 KQFDDAIKAARAGRPVDLSELPP 57 (59)
T ss_pred hhHHHHHHHHHCCCCCChhcCCC
Confidence 34778999999999999988876
No 4
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=67.91 E-value=6.6 Score=20.67 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHHcCC
Q 035382 29 TGRDIRLAIECVLSGQ 44 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~ 44 (66)
++..|..||+++..|+
T Consensus 1 tee~l~~Ai~~v~~g~ 16 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK 16 (45)
T ss_dssp -HHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhCC
Confidence 4678999999999886
No 5
>PHA02516 W baseplate wedge subunit; Provisional
Probab=65.60 E-value=9 Score=23.30 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceee
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIK 59 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIK 59 (66)
...++++.|..||.-++-+-..-|-+||.|.
T Consensus 11 ~~~~I~qsI~~iL~T~~Ger~~~p~fG~~l~ 41 (103)
T PHA02516 11 DLEHIRQSIGDILLTPLGSRVMRREYGSLLP 41 (103)
T ss_pred CHHHHHHHHHHHHcCCCcccccCcccccchH
Confidence 5779999999999999999999999999863
No 6
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=63.00 E-value=4 Score=31.81 Aligned_cols=42 Identities=21% Similarity=0.179 Sum_probs=32.2
Q ss_pred CcEEEEeee-ccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCC
Q 035382 8 PFQLVYHGQ-FDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQ 50 (66)
Q Consensus 8 ~~~L~Y~Gr-IDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~ 50 (66)
...|.|||+ |||.-...+ .++.+.-.+||+++|.=+.+.+..
T Consensus 357 ~~vL~~hG~sidDii~~vP-~~~~~~~~~ame~lLk~rHlaPty 399 (481)
T COG1311 357 VDVLIYHGRSIDDIIKLVP-GADYDSPLKAMEELLKRRHLAPTY 399 (481)
T ss_pred EEEEEecCCCHHHHHhhCC-CCCccchHHHHHHHHHhcccCCCC
Confidence 568999999 888854433 356778899999999988876643
No 7
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.50 E-value=4 Score=30.70 Aligned_cols=15 Identities=33% Similarity=0.915 Sum_probs=12.4
Q ss_pred CCCCCcceeeeeCCC
Q 035382 50 QKPSVGCSIKWHPQT 64 (66)
Q Consensus 50 ~t~s~GCsIKw~~~~ 64 (66)
-..+.||-|.|++++
T Consensus 244 i~~~~Gc~IdW~~gk 258 (358)
T KOG1507|consen 244 IEKCEGCEIDWKPGK 258 (358)
T ss_pred EEeeecCeeeccCCC
Confidence 456899999998875
No 8
>PRK09192 acyl-CoA synthetase; Validated
Probab=53.59 E-value=12 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.034 Sum_probs=26.4
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.||.-...+..+.-.+++.+|...
T Consensus 451 ~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 483 (579)
T PRK09192 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQE 483 (579)
T ss_pred CCEEEEEeccccEEEECCCccCHHHHHHHHHhc
Confidence 467999999999866556667788899988874
No 9
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=53.55 E-value=30 Score=22.98 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=27.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+++|+|.=..+.. . .....+|.++|++|.... ...+-|...|++|.
T Consensus 126 ~G~I~~~~~~~~~-~----gr~~~ell~~l~~lq~~~------~~~~~~p~~w~~g~ 171 (203)
T cd03016 126 DKKIRLILYYPAT-T----GRNFDEILRVVDALQLTD------KHKVATPANWKPGD 171 (203)
T ss_pred CCeEEEEEecCCC-C----CCCHHHHHHHHHHHhhHh------hcCcCcCCCCCCCC
Confidence 4566666432222 1 124667888888874432 33688999998764
No 10
>PRK13190 putative peroxiredoxin; Provisional
Probab=53.48 E-value=30 Score=23.06 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=29.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+++|+|.---+.. ......+|..+|++|....+ + ..-|+..|++++
T Consensus 126 ~G~I~~~~~~~~~-----~gr~~~ellr~l~~l~~~~~-----~-~~~~p~~w~~g~ 171 (202)
T PRK13190 126 NQIVRWMIYYPAE-----TGRNIDEIIRITKALQVNWK-----R-KVATPANWQPGQ 171 (202)
T ss_pred CCEEEEEEEeCCC-----CCCCHHHHHHHHHHhhhHHh-----c-CCCcCCCCCcCC
Confidence 5677777543221 12356788888888865322 1 477889998765
No 11
>COG3628 Phage baseplate assembly protein W [General function prediction only]
Probab=51.58 E-value=30 Score=22.29 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCCCcceee
Q 035382 28 VTGRDIRLAIECVLSGQPVSSNQKPSVGCSIK 59 (66)
Q Consensus 28 ~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIK 59 (66)
....+++++|..+|+--.-+-.-.|-+||.+-
T Consensus 17 s~~dhirQSi~~IL~Tp~GsRvmRp~yGs~L~ 48 (116)
T COG3628 17 SDLDHIRQSIRDILSTPLGSRVMRPDYGSNLP 48 (116)
T ss_pred cccHHHHHHHHHHHhCCCCccccccccccchH
Confidence 35789999999999988888888899999863
No 12
>PRK08315 AMP-binding domain protein; Validated
Probab=50.67 E-value=15 Score=26.85 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=24.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.+.|.||+||.....+..+.-.+++++|.++
T Consensus 440 dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~ 472 (559)
T PRK08315 440 EGYVNIVGRIKDMIIRGGENIYPREIEEFLYTH 472 (559)
T ss_pred CceEEEEeeccceEEECCEEEcHHHHHHHHHhC
Confidence 577999999999865445555666778777654
No 13
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=50.12 E-value=14 Score=27.42 Aligned_cols=34 Identities=9% Similarity=-0.041 Sum_probs=26.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 41 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~all 41 (66)
++.|.|.||+||.-...+..+.-.+++++|...-
T Consensus 423 ~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~ 456 (539)
T PRK06334 423 HGELFLKGRLSRFVKIGAEMVSLEALESILMEGF 456 (539)
T ss_pred CCeEEEEeccCCeEEECCEEECHHHHHHHHHHcc
Confidence 6779999999998655566677788888887653
No 14
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=49.93 E-value=26 Score=23.38 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeee
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw 60 (66)
...|++.||+.--.|+- .+...|++||-|--
T Consensus 6 ~~~~M~~Al~lA~k~~g-~T~pNP~VG~VIV~ 36 (146)
T COG0117 6 DERYMERALELAEKGQG-TTSPNPSVGCVIVK 36 (146)
T ss_pred HHHHHHHHHHHHHhcCC-cCCCCCceeEEEEE
Confidence 46799999997777665 44568999998863
No 15
>PLN03051 acyl-activating enzyme; Provisional
Probab=49.71 E-value=16 Score=26.63 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=24.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||.||.-...+..+.-.+++++|..
T Consensus 370 dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~ 401 (499)
T PLN03051 370 GGYFCVQGRADDTMNLGGIKTSSVEIERACDR 401 (499)
T ss_pred CCcEEEEeccCCEEeeCCEECCHHHHHHHHHh
Confidence 67799999999996666666677788887763
No 16
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=49.61 E-value=13 Score=27.21 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=25.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||+||.-...+..+.-.+++.+|.+.
T Consensus 408 ~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 440 (525)
T PRK05851 408 DGGLVVCGRAKELITVAGRNIFPTEIERVAAQV 440 (525)
T ss_pred CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhC
Confidence 467999999999866555667777888888765
No 17
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=49.59 E-value=13 Score=27.63 Aligned_cols=33 Identities=9% Similarity=0.023 Sum_probs=24.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||+||.-...+..+.-.+++++|..+
T Consensus 452 dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~ 484 (600)
T PRK08279 452 FGHAQFVDRLGDTFRWKGENVATTEVENALSGF 484 (600)
T ss_pred CccEEEecccCCeEEECCcccCHHHHHHHHhcC
Confidence 567999999999865555566677888877653
No 18
>PHA00415 25 baseplate wedge subunit
Probab=49.44 E-value=23 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCccee
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSI 58 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsI 58 (66)
....+++.|..||.-.+-+-..-|-+||-+
T Consensus 29 ~~~sI~qsI~~IL~T~~GER~~rPdfG~~l 58 (131)
T PHA00415 29 GARAIKNSLLGIVTTRKGERPFDPNFGCDI 58 (131)
T ss_pred CHHHHHHHHHHHhCCCCCccccCcccCcch
Confidence 457899999999999999999999999965
No 19
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=49.35 E-value=41 Score=21.39 Aligned_cols=45 Identities=9% Similarity=0.088 Sum_probs=25.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~ 63 (66)
+++|+|+-.- ..+. . . ....|.++|+.+ .....+-.-|...|+++
T Consensus 129 ~G~I~~~~~~-~~~~-~--~-~~~~il~~l~~~------~~~~~~~~~~~~~~~~~ 173 (173)
T cd03015 129 EGIIRHITVN-DLPV-G--R-SVDETLRVLDAL------QFVEEHGEVCPANWKPG 173 (173)
T ss_pred CCeEEEEEec-CCCC-C--C-CHHHHHHHHHHh------hhhhhcCCCcCCCCCCC
Confidence 6778888742 2211 1 1 233455666554 23335556789999865
No 20
>PHA03303 envelope glycoprotein L; Provisional
Probab=49.10 E-value=16 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcce
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCS 57 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCs 57 (66)
+..-|-.||...|.+++-.....++.||-
T Consensus 119 ~r~aL~~al~~al~sr~d~st~pp~~GCV 147 (159)
T PHA03303 119 IRDALLDALSGALQDRGDISTDIPDIGCV 147 (159)
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCCcc
Confidence 45567788899999999999999999995
No 21
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=46.57 E-value=17 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=25.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
+|.|.+.||.||.-...+..+...+++++|.+.
T Consensus 512 dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~ 544 (652)
T TIGR01217 512 RGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERL 544 (652)
T ss_pred CCcEEEEecccCeEecCCEEcCHHHHHHHHHhC
Confidence 567999999999865555556777888887753
No 22
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=45.12 E-value=15 Score=25.31 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=24.4
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++.+|..+
T Consensus 246 ~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 278 (358)
T PRK07824 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATH 278 (358)
T ss_pred CCEEEEEeccCCeEEECCEEECHHHHHHHHHhC
Confidence 567899999999966555556667777777654
No 23
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=44.92 E-value=20 Score=25.53 Aligned_cols=33 Identities=9% Similarity=-0.119 Sum_probs=24.4
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.+.+.||.||.-...+..+.-.+++++|..+
T Consensus 405 ~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 437 (513)
T PRK07656 405 EGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEH 437 (513)
T ss_pred CeeEEEEecccceEEeCCEEeCHHHHHHHHHhC
Confidence 677999999999865555556667788877654
No 24
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=44.56 E-value=17 Score=25.82 Aligned_cols=33 Identities=12% Similarity=-0.109 Sum_probs=24.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||+||.....+..+.-.+++.+|..+
T Consensus 373 ~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~ 405 (483)
T PRK03640 373 EGFLYVLDRRSDLIISGGENIYPAEIEEVLLSH 405 (483)
T ss_pred CCCEEEeecccCeEEeCCEEECHHHHHHHHHhC
Confidence 567999999999865555566667788877653
No 25
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=44.35 E-value=11 Score=27.98 Aligned_cols=14 Identities=21% Similarity=0.537 Sum_probs=11.5
Q ss_pred CCCCcceeeeeCCC
Q 035382 51 KPSVGCSIKWHPQT 64 (66)
Q Consensus 51 t~s~GCsIKw~~~~ 64 (66)
..+.||.|+|++++
T Consensus 179 ~~~~~t~I~WK~Gk 192 (337)
T PTZ00007 179 SNTVATEIDWKQGK 192 (337)
T ss_pred ecceeeeceeeCCC
Confidence 46779999999874
No 26
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=43.83 E-value=34 Score=22.21 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=25.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 45 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~ 45 (66)
.+++.|-|-+- .+.+....-|.+||+.|++...
T Consensus 3 ~f~~~yLG~~~-----V~~p~Gmdvln~AI~~l~~~~~ 35 (124)
T cd01271 3 VFRVQYLGMLP-----VDKPTGMEILNSAIDNLMSSSN 35 (124)
T ss_pred EEEEEEeccEe-----ecCCccHHHHHHHHHHHHhcCC
Confidence 57889999862 2335567789999999997765
No 27
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=43.40 E-value=19 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=24.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|..+
T Consensus 344 ~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~ 376 (458)
T PRK09029 344 NGELTILGRLDNLFFSGGEGIQPEEIERVINQH 376 (458)
T ss_pred CCEEEEecccccceeeCCEEeCHHHHHHHHhcC
Confidence 567999999999865455556677888887654
No 28
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=43.20 E-value=24 Score=25.28 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=24.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++++|..+
T Consensus 407 ~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~ 439 (515)
T TIGR03098 407 EGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYAT 439 (515)
T ss_pred CceEEEEeccccceecCCEEeCHHHHHHHHhcC
Confidence 567999999999866556566777788777543
No 29
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=42.54 E-value=20 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=24.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++++|..+
T Consensus 486 dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~ 518 (629)
T PRK10524 486 DGYYFILGRTDDVINVAGHRLGTREIEESISSH 518 (629)
T ss_pred CCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhC
Confidence 567999999999865555556677888888653
No 30
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=42.04 E-value=20 Score=27.05 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=25.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 485 dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~ 517 (628)
T TIGR02316 485 DGYTFILGRTDDVINVAGHRLGTREIEESVSSH 517 (628)
T ss_pred CCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhC
Confidence 567999999999865555556777888888654
No 31
>PRK09274 peptide synthase; Provisional
Probab=40.83 E-value=16 Score=26.68 Aligned_cols=33 Identities=6% Similarity=-0.076 Sum_probs=23.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-......+.-.+++.+|..+
T Consensus 433 dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 465 (552)
T PRK09274 433 QGRLWFCGRKAHRVETAGGTLYTIPCERIFNTH 465 (552)
T ss_pred CCcEEEEeccCCeEEECCEEECcHHHHHHHHhC
Confidence 567999999999865444445566777777654
No 32
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=40.78 E-value=30 Score=19.96 Aligned_cols=30 Identities=23% Similarity=0.155 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeee
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWH 61 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~ 61 (66)
.+.+|+.|++...... .....++||-|--+
T Consensus 4 ~~~~m~~a~~~a~~s~---~~~~~~vgaviv~~ 33 (102)
T PF00383_consen 4 DEEFMRIAIELAKRSR---PCGNFPVGAVIVDP 33 (102)
T ss_dssp HHHHHHHHHHHHHTHB---TTTSSSEEEEEEET
T ss_pred HHHHHHHHHHHHHhcc---ccCCCCEEEEEEec
Confidence 3678899998888776 55688999998653
No 33
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=40.63 E-value=25 Score=26.66 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=23.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||.||.-...+..+.-.+++.+|.+
T Consensus 511 dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~ 542 (655)
T PRK03584 511 HGGVVIYGRSDATLNRGGVRIGTAEIYRQVEA 542 (655)
T ss_pred CCeEEEEeeccCeeecCcEEECHHHHHHHHHh
Confidence 56799999999996555545566677777764
No 34
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=40.18 E-value=65 Score=19.59 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=26.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 45 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~ 45 (66)
..+++++|.......... . ....+..++.+||+.=|
T Consensus 114 ~~~~vW~g~a~~~~~~~~-~-~~~~i~~~V~~i~~~fP 149 (151)
T PF13590_consen 114 TNKVVWRGTASGRLSDNA-D-REEAIPKAVNKIFEQFP 149 (151)
T ss_pred CCCEEEEEEEEeccCCCc-C-HHHHHHHHHHHHHHhCC
Confidence 567999999876643322 2 67889999999997644
No 35
>PRK06145 acyl-CoA synthetase; Validated
Probab=39.23 E-value=23 Score=25.38 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=24.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++.+|..+
T Consensus 386 ~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~ 418 (497)
T PRK06145 386 EGFLYLTDRKKDMIISGGENIASSEVERVIYEL 418 (497)
T ss_pred CCcEEEeccccceEEeCCeEECHHHHHHHHHhC
Confidence 566899999999865555566677888887764
No 36
>PRK13390 acyl-CoA synthetase; Provisional
Probab=39.15 E-value=33 Score=24.68 Aligned_cols=33 Identities=9% Similarity=-0.107 Sum_probs=24.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|..+
T Consensus 392 dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~ 424 (501)
T PRK13390 392 DGYLYLADRKSFMIISGGVNIYPQETENALTMH 424 (501)
T ss_pred CCeEEEeeccccceeECCeeeCHHHHHHHHHhC
Confidence 567999999999865555556666777777543
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=39.09 E-value=21 Score=26.08 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=24.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.||.-...+..+.-.+++++|.+.
T Consensus 288 ~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~ 320 (386)
T TIGR02372 288 DGGFTILGRKDEILQVGGVNVSPGHVRDILERN 320 (386)
T ss_pred CCcEEEecccCCEEEECCEEEcHHHHHHHHHcC
Confidence 566999999999865555566677777777764
No 38
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=38.90 E-value=24 Score=26.46 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=24.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|...
T Consensus 488 dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~ 520 (625)
T TIGR02188 488 DGYIWITGRVDDVINVSGHRLGTAEIESALVSH 520 (625)
T ss_pred CCcEEEEecccCEEEeCCEEECHHHHHHHHHhC
Confidence 567999999999865555556677888887653
No 39
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=38.89 E-value=27 Score=26.35 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=25.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++.+|..
T Consensus 476 dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 507 (631)
T PRK07769 476 DGELYITGRVKDLVIIDGRNHYPQDLEYTAQE 507 (631)
T ss_pred CCEEEEEcccccEEEECCeeeCHHHHHHHHHh
Confidence 56799999999996655666677788888764
No 40
>PRK07788 acyl-CoA synthetase; Validated
Probab=38.81 E-value=24 Score=25.82 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=23.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|...
T Consensus 440 ~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 472 (549)
T PRK07788 440 DGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGH 472 (549)
T ss_pred CCCEEEeccCcceEEECCEEECHHHHHHHHHhC
Confidence 567999999999865555555666777777653
No 41
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=38.70 E-value=50 Score=22.00 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=27.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+++++|.=.-+.. ......++.++|+++-.-+ .+.=.-|...|++++
T Consensus 128 ~G~I~~~~~~~~~-----~~~~~~eil~~l~alq~~~-----~~~g~~~p~~w~~~~ 174 (187)
T PRK10382 128 QGIIQAIEVTAEG-----IGRDASDLLRKIKAAQYVA-----SHPGEVCPAKWKEGE 174 (187)
T ss_pred CCEEEEEEEeCCC-----CCCCHHHHHHHHHhhhhHh-----hcCCeEeCCCCCcCC
Confidence 6678877442211 1124667777777776411 222366899998764
No 42
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=38.33 E-value=26 Score=26.42 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=24.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.||.-...+..+.-.+++++|.+.
T Consensus 496 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 528 (637)
T PRK00174 496 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAH 528 (637)
T ss_pred CCcEEEEEecccEEEeCCEEECHHHHHHHHHhC
Confidence 567999999999965555556667788877653
No 43
>PRK07514 malonyl-CoA synthase; Validated
Probab=38.27 E-value=23 Score=25.31 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=24.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-..++++|..+
T Consensus 390 ~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~ 422 (504)
T PRK07514 390 RGYVHIVGRGKDLIISGGYNVYPKEVEGEIDEL 422 (504)
T ss_pred CccEEEeccccceEEeCCeEECHHHHHHHHHhC
Confidence 566899999999865555556667888887654
No 44
>PRK08162 acyl-CoA synthetase; Validated
Probab=38.14 E-value=22 Score=25.87 Aligned_cols=32 Identities=6% Similarity=-0.073 Sum_probs=24.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.|.||.||.-...+..+.-.+++.+|..
T Consensus 429 dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~ 460 (545)
T PRK08162 429 DGYIKIKDRSKDIIISGGENISSIEVEDVLYR 460 (545)
T ss_pred CccEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 56799999999986555555667777777764
No 45
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=38.07 E-value=22 Score=26.26 Aligned_cols=33 Identities=3% Similarity=0.018 Sum_probs=24.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++.+|.++
T Consensus 413 dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 445 (542)
T PRK06155 413 DGWFRFVDRIKDAIRRRGENISSFEVEQVLLSH 445 (542)
T ss_pred CceEEEEecCCCEEEeCCEEECHHHHHHHHHhC
Confidence 667999999999865555556677888887664
No 46
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=37.80 E-value=28 Score=25.56 Aligned_cols=33 Identities=12% Similarity=-0.029 Sum_probs=25.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++++|..+
T Consensus 450 ~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~ 482 (560)
T PRK08751 450 QGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMM 482 (560)
T ss_pred CceEEEEeechhheeECCEEEcHHHHHHHHHhC
Confidence 567999999999865555566677888888654
No 47
>PRK12583 acyl-CoA synthetase; Provisional
Probab=37.75 E-value=26 Score=25.49 Aligned_cols=32 Identities=13% Similarity=-0.042 Sum_probs=24.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||+||.....+..+.-.+++++|..
T Consensus 441 dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~ 472 (558)
T PRK12583 441 QGYVRIVGRSKDMIIRGGENIYPREIEEFLFT 472 (558)
T ss_pred CccEEEEecccceeEECCEEeCHHHHHHHHHh
Confidence 56799999999986555555666778777754
No 48
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=37.03 E-value=28 Score=25.73 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=23.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++++|...
T Consensus 427 dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 459 (563)
T PLN02860 427 AGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQH 459 (563)
T ss_pred CCCEEEeecccceeEECCEEccHHHHHHHHHhC
Confidence 567999999999865555555566777776553
No 49
>PRK05850 acyl-CoA synthetase; Validated
Probab=36.49 E-value=32 Score=25.36 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=27.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 41 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~all 41 (66)
++.|.+.||+||.-...+..+.-.+++.+|.++-
T Consensus 449 ~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~ 482 (578)
T PRK05850 449 EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEIT 482 (578)
T ss_pred CCEEEEEcccccEEEECCeecCHHHHHHHHHHhc
Confidence 5689999999998665566677889999988763
No 50
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=36.28 E-value=26 Score=25.46 Aligned_cols=33 Identities=15% Similarity=0.011 Sum_probs=25.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.||.-...+..+.-.+++.+|.+.
T Consensus 337 dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~ 369 (452)
T PRK07445 337 QGYLHILGRNSQKIITGGENVYPAEVEAAILAT 369 (452)
T ss_pred CCCEEEEeecCCEEEECCEEECHHHHHHHHHhC
Confidence 566899999999865555566777888887764
No 51
>PRK07798 acyl-CoA synthetase; Validated
Probab=36.20 E-value=32 Score=24.60 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=23.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.....+..+.-.+++.+|.++
T Consensus 421 ~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~ 453 (533)
T PRK07798 421 DGTITLLGRGSVCINTGGEKVFPEEVEEALKAH 453 (533)
T ss_pred CCcEEEEccccceEecCCEEeCHHHHHHHHHhC
Confidence 567889999999865555556666777776653
No 52
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=35.98 E-value=35 Score=27.28 Aligned_cols=34 Identities=9% Similarity=-0.058 Sum_probs=27.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 41 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~all 41 (66)
++.|.+.||+||.-...+..+.-.+++++|.+..
T Consensus 1032 ~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~ 1065 (1146)
T PRK08633 1032 DGFLTITDRYSRFAKIGGEMVPLGAVEEELAKAL 1065 (1146)
T ss_pred CceEEEEecccchhhhCcEEECHHHHHHHHHhcc
Confidence 6779999999998665555667788999988765
No 53
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=35.91 E-value=44 Score=24.40 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=24.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++++|.+.
T Consensus 423 ~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~ 455 (547)
T PRK06087 423 AGYIKITGRKKDIIVRGGENISSREVEDILLQH 455 (547)
T ss_pred CCCEEEEecchhhhhcCCEEECHHHHHHHHHhC
Confidence 566999999999865555566677888888653
No 54
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=35.68 E-value=29 Score=25.01 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=23.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.+.||+||.-...+..+.-.+++.+|..
T Consensus 392 ~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~ 423 (509)
T PRK12406 392 DGYLFLCDRKRDMVISGGVNIYPAEIEAVLHA 423 (509)
T ss_pred CceEEEeecccceEEECCEEECHHHHHHHHHh
Confidence 56799999999986545555666777777765
No 55
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=35.63 E-value=30 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=24.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.+.+.||+||.-...+..+.-.+++.+|...
T Consensus 427 ~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~ 459 (545)
T PRK07768 427 EGEVVVCGRVKDVIIMAGRNIYPTDIERAAARV 459 (545)
T ss_pred CCEEEEEccccceEEECCEecCHHHHHHHHHhC
Confidence 467999999999865445556667888877663
No 56
>PLN03102 acyl-activating enzyme; Provisional
Probab=35.47 E-value=31 Score=25.84 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=24.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.||.-...+..+.-.+++++|...
T Consensus 433 dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 465 (579)
T PLN03102 433 DGHVEIKDRSKDIIISGGENISSVEVENVLYKY 465 (579)
T ss_pred CCeEEEEeccCcEEEECCEEECHHHHHHHHHhC
Confidence 567999999999865445556667788877654
No 57
>PRK07638 acyl-CoA synthetase; Validated
Probab=35.34 E-value=33 Score=24.61 Aligned_cols=33 Identities=6% Similarity=-0.054 Sum_probs=24.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|.++
T Consensus 374 ~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~ 406 (487)
T PRK07638 374 EGFIYIVGREKNMILFGGINIFPEEIESVLHEH 406 (487)
T ss_pred CCeEEEEecCCCeEEeCCEEECHHHHHHHHHhC
Confidence 567999999999865455556667788777654
No 58
>PRK06839 acyl-CoA synthetase; Validated
Probab=35.28 E-value=24 Score=25.09 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=23.4
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.+.+.||+||.-...+..+.-.+++++|..+
T Consensus 384 ~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~ 416 (496)
T PRK06839 384 DGFVYIVGRKKEMIISGGENIYPLEVEQVINKL 416 (496)
T ss_pred CCcEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 566889999999865445555666777777553
No 59
>PRK09088 acyl-CoA synthetase; Validated
Probab=35.28 E-value=25 Score=25.16 Aligned_cols=33 Identities=12% Similarity=-0.135 Sum_probs=23.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||+||.-...+..+.-.+++++|..+
T Consensus 374 ~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~ 406 (488)
T PRK09088 374 DGFFWVVDRKKDMFISGGENVYPAEIEAVLADH 406 (488)
T ss_pred CCcEEEeccccceEEeCCEEECHHHHHHHHHhC
Confidence 567999999999865444555566777777553
No 60
>PRK08316 acyl-CoA synthetase; Validated
Probab=35.25 E-value=28 Score=24.90 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=23.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|.++
T Consensus 408 ~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~ 440 (523)
T PRK08316 408 EGYITVVDRKKDMIKTGGENVASREVEEALYTH 440 (523)
T ss_pred CceEEEecccccEEEeCCeEECHHHHHHHHHhC
Confidence 567999999999865455555666777777553
No 61
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=35.22 E-value=26 Score=24.96 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=23.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.+.+.||.||.-...+..+.-.++++++..+
T Consensus 388 ~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 420 (503)
T PRK04813 388 DGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQS 420 (503)
T ss_pred CCeEEEeccccceEEECcEEeCHHHHHHHHHhC
Confidence 567999999998865555556666777776653
No 62
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=34.97 E-value=25 Score=29.16 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=25.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
+|.|.|.||.||.-...+..+.-.+++.+|.+.
T Consensus 691 dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~ 723 (1389)
T TIGR03443 691 DGNVECCGRADDQVKIRGFRIELGEIDTHLSQH 723 (1389)
T ss_pred CCCEEEecccCCEEEeCcEEecHHHHHHHHHhC
Confidence 577999999999976555556666788777653
No 63
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=34.92 E-value=31 Score=26.43 Aligned_cols=33 Identities=15% Similarity=-0.088 Sum_probs=25.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+...+++++|...
T Consensus 505 dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~ 537 (647)
T PTZ00237 505 NGYYTIVSRSDDQIKISGNKVQLNTIETSILKH 537 (647)
T ss_pred CCeEEEEeccCCEEEECCEEeCHHHHHHHHHhC
Confidence 567999999999865555566777888887653
No 64
>PRK07470 acyl-CoA synthetase; Validated
Probab=34.60 E-value=24 Score=25.58 Aligned_cols=33 Identities=21% Similarity=0.047 Sum_probs=23.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++.+|.++
T Consensus 407 ~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~ 439 (528)
T PRK07470 407 RGFLYITGRASDMYISGGSNVYPREIEEKLLTH 439 (528)
T ss_pred CCeEEEeCCccceEEeCCEEECHHHHHHHHHhC
Confidence 567999999999754445555666777777653
No 65
>PF15603 Imm45: Immunity protein 45
Probab=34.57 E-value=87 Score=18.72 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=22.8
Q ss_pred EEEEeeeccCCCCCCC-CCCcHHHHHHHHHHHH
Q 035382 10 QLVYHGQFDDSRPSNN-LPVTGRDIRLAIECVL 41 (66)
Q Consensus 10 ~L~Y~GrIDD~~~~~~-~~~~~~~L~~Ai~all 41 (66)
-++|+.-|...-|+.. .+.+..++...|+++-
T Consensus 37 Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~ 69 (82)
T PF15603_consen 37 FVVYKDSIKNWEPPHENEPITIAERQKIIEAIE 69 (82)
T ss_pred EEEEccccccccCCCCCcccCHHHHHHHHHHHH
Confidence 5789999987766544 4677877777666653
No 66
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=34.47 E-value=34 Score=27.66 Aligned_cols=34 Identities=3% Similarity=-0.138 Sum_probs=26.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 41 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~all 41 (66)
++.|.|.||.||.-...+..+.-.+++++|.++.
T Consensus 1023 dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~ 1056 (1140)
T PRK06814 1023 EGFITIKGRAKRFAKIAGEMISLAAVEELAAELW 1056 (1140)
T ss_pred CCeEEEEecccCeeeeCCEEECHHHHHHHHHhcC
Confidence 6779999999998655555566778888887653
No 67
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=33.86 E-value=29 Score=25.46 Aligned_cols=32 Identities=13% Similarity=-0.064 Sum_probs=22.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.+.||+||.-...+..+.-.+++.+|..
T Consensus 422 dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 453 (539)
T PRK07008 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVA 453 (539)
T ss_pred CCcEEEeecccCEEEeCCeEEcHHHHHHHHHh
Confidence 55689999999986544555555666666654
No 68
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=33.81 E-value=14 Score=25.45 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=8.7
Q ss_pred CCCCcceeeeeCCC
Q 035382 51 KPSVGCSIKWHPQT 64 (66)
Q Consensus 51 t~s~GCsIKw~~~~ 64 (66)
..+.||.|+|++++
T Consensus 148 ~~~~~t~I~Wk~gk 161 (244)
T PF00956_consen 148 LKSESTPIDWKPGK 161 (244)
T ss_dssp EEEEE---EBSTTT
T ss_pred ceeeeecccccCCC
Confidence 67889999998764
No 69
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=33.48 E-value=28 Score=28.45 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=24.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.|+.-...+..+.-.+++.+|...
T Consensus 850 ~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~ 882 (1296)
T PRK10252 850 DGAVEYLGRSDDQLKIRGQRIELGEIDRAMQAL 882 (1296)
T ss_pred CCcEEEecccCCeEEEeeEEecHHHHHHHHHhC
Confidence 567999999999965555555667788887653
No 70
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=33.08 E-value=49 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=24.4
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 38 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~ 38 (66)
+|=+..+||.||.-...+--....++++||.
T Consensus 488 dGY~~i~GR~DDviNvsGhRigtaEIE~al~ 518 (626)
T KOG1175|consen 488 DGYYWILGRVDDVINVSGHRIGTAEIESALV 518 (626)
T ss_pred CceEEEEecccccccccceeecHHHHHHHHh
Confidence 5569999999999765555567888998884
No 71
>PRK06164 acyl-CoA synthetase; Validated
Probab=32.99 E-value=35 Score=24.80 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=23.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.+.|.||+||.-...+..+.-.+++.+|..+
T Consensus 419 ~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~ 451 (540)
T PRK06164 419 DGQFVYQTRMGDSLRLGGFLVNPAEIEHALEAL 451 (540)
T ss_pred CceEEEEeecCCeEEECCEEcCHHHHHHHHHhC
Confidence 567899999999854445556666777777543
No 72
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=32.89 E-value=31 Score=25.45 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=24.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++++|..+
T Consensus 446 ~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~ 478 (562)
T PRK05677 446 DGYMRIVDRKKDMILVSGFNVYPNELEDVLAAL 478 (562)
T ss_pred CCcEEEEecCcCeEEeCCEEECHHHHHHHHHhC
Confidence 567999999999855445556677888888664
No 73
>PRK08308 acyl-CoA synthetase; Validated
Probab=32.26 E-value=36 Score=24.03 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=23.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.|.||.||.-...+..+.-.+++++|..
T Consensus 304 dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 335 (414)
T PRK08308 304 RGTLHFMGRMDDVINVSGLNVYPIEVEDVMLR 335 (414)
T ss_pred CccEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence 46699999999986655555666677777665
No 74
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=31.88 E-value=26 Score=20.75 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=8.7
Q ss_pred CcEEEEeeec
Q 035382 8 PFQLVYHGQF 17 (66)
Q Consensus 8 ~~~L~Y~GrI 17 (66)
.-+|.|.|+|
T Consensus 45 ~QrLIy~GKi 54 (79)
T cd01790 45 DQRLIYSGKL 54 (79)
T ss_pred HeEEEEcCee
Confidence 5689999997
No 75
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=31.52 E-value=49 Score=24.89 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=24.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||+||.-...+..+.-.+++++|..
T Consensus 488 dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~ 519 (612)
T PRK12476 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAE 519 (612)
T ss_pred CCEEEEEeccCcEEEECCcccCHHHHHHHHHH
Confidence 56799999999986656666777788887753
No 76
>PLN02246 4-coumarate--CoA ligase
Probab=31.17 E-value=27 Score=25.55 Aligned_cols=33 Identities=6% Similarity=0.045 Sum_probs=24.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++.+|.++
T Consensus 425 ~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~ 457 (537)
T PLN02246 425 DDELFIVDRLKELIKYKGFQVAPAELEALLISH 457 (537)
T ss_pred CCeEEEEecccceEEECCEEECcHHHHHHHHhC
Confidence 457999999999865445455667788877664
No 77
>PLN03052 acetate--CoA ligase; Provisional
Probab=30.93 E-value=44 Score=26.36 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=24.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 38 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~ 38 (66)
++-|.+.||.||.-...+..+...+++++|.
T Consensus 602 dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~ 632 (728)
T PLN03052 602 GGYYRAHGRADDTMNLGGIKVSSVEIERVCN 632 (728)
T ss_pred CCeEEEEecCCCEEeeCCEEeCHHHHHHHHH
Confidence 5679999999999766665667778888774
No 78
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=30.86 E-value=35 Score=24.61 Aligned_cols=32 Identities=6% Similarity=-0.079 Sum_probs=23.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.|.||.||.....+..+.-.+++.+|..
T Consensus 411 ~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~ 442 (517)
T PRK08008 411 EGFFYFVDRRCNMIKRGGENVSCVELENIIAT 442 (517)
T ss_pred CCcEEEeecccceEEeCCEEECHHHHHHHHHh
Confidence 56799999999986544445556677777755
No 79
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=30.60 E-value=83 Score=19.76 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=24.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 45 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~ 45 (66)
.+.+.|-|-+- -+.+....-+.+||..|++.+.
T Consensus 3 ~F~VkyLG~~e-----V~~~~g~~vv~~ai~~L~~~~~ 35 (123)
T cd01216 3 VFAVRSLGWVE-----VAEEDGSEALNKAIDDLSSCSN 35 (123)
T ss_pred EEEEEeeeeEE-----ECCCCCHHHHHHHHHHHHhccc
Confidence 46789999862 2234578899999999997655
No 80
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=30.56 E-value=44 Score=24.54 Aligned_cols=32 Identities=9% Similarity=-0.058 Sum_probs=23.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||+||.-...+..+.-.+++++|..
T Consensus 432 ~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~ 463 (547)
T PRK13295 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYR 463 (547)
T ss_pred CceEEEEeccCCeEEECCEEECHHHHHHHHHh
Confidence 56799999999986545555566677777655
No 81
>PLN02479 acetate-CoA ligase
Probab=30.41 E-value=45 Score=24.71 Aligned_cols=32 Identities=6% Similarity=-0.042 Sum_probs=23.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||.||.-...+..+.-.+++.+|..
T Consensus 443 ~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 474 (567)
T PLN02479 443 DGYIEIKDRSKDIIISGGENISSLEVENVVYT 474 (567)
T ss_pred CccEEEeccccceEEeCCEEEcHHHHHHHHHh
Confidence 45689999999986545555667778877764
No 82
>PF07660 STN: Secretin and TonB N terminus short domain; InterPro: IPR011662 This is a conserved region found at the N-terminal region of bacterial proteins involved in either protein secretion or the uptake of selective substrates, including: Bundle-forming pilus protein B, an outer-membrane protein absolutely required for pilus biogenesis, and for enteropathogenic Escherichia coli localized adherence and autoaggregation []. PilQ, which is required for type IV pilus biogenesis and competence and is thought to function both as a pore for exit of the pilus and as a channel for entry of haem and antimicrobial agents and uptake of transforming DNA []. PupB, a specific receptor for the siderophores ferric pseudobactin BN8 and ferric pseudobactin BN7, iron chelating molecules that allow the organism to extract iron from the environment, especially under iron-restricted conditions []. TonB, which couples the electrochemical potential of the cytoplasmic membrane to the active transport of iron-siderophores and vitamin B12 across the outer membrane []. ; GO: 0019867 outer membrane; PDB: 2D1U_A 1ZZV_A 2W75_B 2O5P_A 2W77_A 2W16_A 2W6U_B 2W6T_A 2W76_B 2W78_B ....
Probab=30.10 E-value=36 Score=17.48 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHcCCCCCC
Q 035382 29 TGRDIRLAIECVLSGQPVSS 48 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~ 48 (66)
...-+++||+.||+|.....
T Consensus 21 ~~~~~~~~L~~ll~~t~l~y 40 (52)
T PF07660_consen 21 KNMSLEEALDQLLKGTGLTY 40 (52)
T ss_dssp EEE-HHHHHHHHTTTSTEEE
T ss_pred CCcCHHHHHHHHHccCCcEE
Confidence 55689999999999976543
No 83
>PRK13382 acyl-CoA synthetase; Provisional
Probab=29.93 E-value=34 Score=25.18 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=24.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.||.-...+..+.-.+++.+|..+
T Consensus 429 ~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 461 (537)
T PRK13382 429 NGRLFVVGRDDEMIVSGGENVYPIEVEKTLATH 461 (537)
T ss_pred CCcEEEeccccceeEECCEEECHHHHHHHHHhC
Confidence 566999999999965555555666777777664
No 84
>PRK07867 acyl-CoA synthetase; Validated
Probab=29.49 E-value=31 Score=25.43 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=23.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-..++..+.-.+++++|.++
T Consensus 394 ~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 426 (529)
T PRK07867 394 DGYAYFAGRLGDWMRVDGENLGTAPIERILLRY 426 (529)
T ss_pred CCcEEEeccccCeEEECCEEeCHHHHHHHHHhC
Confidence 567999999999865455556666777777654
No 85
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=29.25 E-value=54 Score=25.20 Aligned_cols=32 Identities=6% Similarity=-0.142 Sum_probs=23.8
Q ss_pred CcEEEEeeeccCCCC-CCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~-~~~~~~~~~~L~~Ai~a 39 (66)
+|.|.+.||+||.-. ..+..+.-.+++++|.+
T Consensus 506 dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~ 538 (660)
T PLN02861 506 NGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538 (660)
T ss_pred CCcEEEEeccccceEcCCCeEEcHHHHHHHHhc
Confidence 577999999999964 34556667777777654
No 86
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=28.60 E-value=31 Score=23.76 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=22.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.+.||+||.-...+..+.-.+++++|..
T Consensus 368 ~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~ 399 (408)
T TIGR01733 368 DGNLEFLGRIDDQVKIRGYRIELGEIEAALLR 399 (408)
T ss_pred CCCEEEeeccCCEEEeCeEEechHHHHHHHhc
Confidence 45699999999985555555556677777754
No 87
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=28.49 E-value=81 Score=22.61 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeee
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWH 61 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~ 61 (66)
+...+++.|++++.-+. +.|..|+-||..|-.
T Consensus 171 ~~~~i~~~~~~~~~~R~-~qP~~psaGS~FKNP 202 (273)
T PRK14651 171 TPEAVLAKMALVDAARK-GQPKKKSAGCAFKNP 202 (273)
T ss_pred CHHHHHHHHHHHHHHhc-CCccCCCCcceEeCc
Confidence 56788999999998887 666779999988754
No 88
>PRK06178 acyl-CoA synthetase; Validated
Probab=28.42 E-value=42 Score=24.69 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=24.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||.||.-...+..+.-.+++++|..
T Consensus 455 ~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~ 486 (567)
T PRK06178 455 QGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQ 486 (567)
T ss_pred CCeEEEEecccccEEECCEEECHHHHHHHHHh
Confidence 56789999999986655555667788888765
No 89
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=28.25 E-value=47 Score=24.17 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=23.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|..+
T Consensus 421 ~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~ 453 (527)
T TIGR02275 421 EGYIVVVGRAKDQINRGGEKIAAEEIENLLLAH 453 (527)
T ss_pred CccEEEEecccceeecCCEEECHHHHHHHHHhC
Confidence 566999999999865455556667777777653
No 90
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=28.20 E-value=55 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=26.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 41 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~all 41 (66)
+|-+.++||-||--...+--....++++||.+.-
T Consensus 409 dGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP 442 (528)
T COG0365 409 DGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHP 442 (528)
T ss_pred CCCEEEEeeccceEeccCeeccHHHHHHHHHhCc
Confidence 5669999999998654444567789999987754
No 91
>PLN02654 acetate-CoA ligase
Probab=28.18 E-value=50 Score=25.43 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=25.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+...+++.+|.+.
T Consensus 526 dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~ 558 (666)
T PLN02654 526 DGYYWLTGRVDDVINVSGHRIGTAEVESALVSH 558 (666)
T ss_pred CCcEEEeeeccCeEEeCCEEECHHHHHHHHHhC
Confidence 567999999999866556667778888888753
No 92
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=28.16 E-value=44 Score=24.54 Aligned_cols=33 Identities=12% Similarity=-0.090 Sum_probs=23.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-..++++|..+
T Consensus 445 ~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~ 477 (560)
T PRK08974 445 EGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLH 477 (560)
T ss_pred CceEEEEecccceEEeCCEEECHHHHHHHHHhC
Confidence 567899999999865445455566777777654
No 93
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=28.10 E-value=56 Score=24.07 Aligned_cols=33 Identities=3% Similarity=-0.071 Sum_probs=24.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|...
T Consensus 458 ~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~ 490 (573)
T PRK05605 458 DGFIRIVDRIKELIITGGFNVYPAEVEEVLREH 490 (573)
T ss_pred CCcEEEEeccccceeeCCEEECHHHHHHHHHhC
Confidence 567999999999966555566677788877653
No 94
>PHA02919 host-range protein; Provisional
Probab=27.93 E-value=36 Score=22.85 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=11.5
Q ss_pred CCCCCCCcceeeeeCC
Q 035382 48 SNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 48 ~~~t~s~GCsIKw~~~ 63 (66)
--.-.|+||.|+-+..
T Consensus 22 L~kGdsYGC~i~lk~~ 37 (150)
T PHA02919 22 LHRGDNYGCKLKIISN 37 (150)
T ss_pred eccCCccceEEEEEEC
Confidence 3345799999998643
No 95
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=27.87 E-value=47 Score=24.56 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=24.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|.+.
T Consensus 445 ~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~ 477 (570)
T PRK04319 445 DGYFWFQGRVDDVIKTSGERVGPFEVESKLMEH 477 (570)
T ss_pred CeeEEEEecCCCEEEECCEEECHHHHHHHHhhC
Confidence 667999999999865455556677888888764
No 96
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=27.85 E-value=40 Score=23.11 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCCCCC
Q 035382 33 IRLAIECVLSGQPVSS 48 (66)
Q Consensus 33 L~~Ai~allaG~~v~~ 48 (66)
+++||++|.+|++|-+
T Consensus 1 ie~ai~al~~G~~Viv 16 (194)
T PF00926_consen 1 IEEAIEALKAGKPVIV 16 (194)
T ss_dssp HHHHHHHHHTTS-EEE
T ss_pred CHHHHHHHHCCCeEEE
Confidence 4789999999999854
No 97
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=27.83 E-value=45 Score=23.30 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=22.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.+.||.||.-...+..+.-..++.+|.+
T Consensus 333 dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 364 (436)
T TIGR01923 333 EGFLYVLGRRDDLIISGGENIYPEEIETVLYQ 364 (436)
T ss_pred CCCEEEeccccCeEEeCCEeeCHHHHHHHHHh
Confidence 46689999999986544445556667766654
No 98
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=27.43 E-value=40 Score=24.52 Aligned_cols=33 Identities=3% Similarity=-0.082 Sum_probs=24.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++++|..+
T Consensus 429 ~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~ 461 (546)
T PRK08314 429 EGYFFITDRLKRMINASGFKVWPAEVENLLYKH 461 (546)
T ss_pred CCcEEEEecchhhEEeCCEEECHHHHHHHHHhC
Confidence 466889999999865555556667888887654
No 99
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=27.22 E-value=51 Score=24.16 Aligned_cols=33 Identities=9% Similarity=-0.153 Sum_probs=24.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.+.+.||.||.-...+..+.-.+++.+|...
T Consensus 423 ~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~ 455 (542)
T PRK06018 423 YGYMRITDRSKDVIKSGGEWISSIDLENLAVGH 455 (542)
T ss_pred CccEEEEecCCCeEEECCEEECHHHHHHHHHhC
Confidence 456889999999866555566677787777653
No 100
>PRK07529 AMP-binding domain protein; Validated
Probab=27.07 E-value=54 Score=24.92 Aligned_cols=33 Identities=12% Similarity=-0.062 Sum_probs=24.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.||.-...+..+.-.+++++|.+.
T Consensus 458 dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~ 490 (632)
T PRK07529 458 DGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRH 490 (632)
T ss_pred CceEEEEecccCEEEeCCEEECHHHHHHHHHhC
Confidence 677999999999865555555666777777653
No 101
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=27.02 E-value=48 Score=19.57 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=20.7
Q ss_pred eeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCC
Q 035382 14 HGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSS 48 (66)
Q Consensus 14 ~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~ 48 (66)
.|||||.. ....+|+..|..|+.-..|.-
T Consensus 40 I~RiDDM~------~riDDLEKnIaDLm~qagvE~ 68 (73)
T KOG4117|consen 40 IGRIDDMS------SRIDDLEKNIADLMTQAGVEE 68 (73)
T ss_pred HHHHhhhh------hhhHHHHHHHHHHHHHccccC
Confidence 47898883 245689999999886555543
No 102
>PRK06060 acyl-CoA synthetase; Validated
Probab=26.84 E-value=48 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=23.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.||.-...+..+.-.+++.+|...
T Consensus 378 dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 410 (705)
T PRK06060 378 DGWVTYRCRADDTEVIGGVNVDPREVERLIIED 410 (705)
T ss_pred CceEEEecccCceEEECCEEECHHHHHHHHHhC
Confidence 577999999999855444455566777777653
No 103
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=26.75 E-value=51 Score=23.44 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=20.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.+.||+||.-...+..+.-..++++|.+
T Consensus 408 ~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~ 439 (521)
T PRK06187 408 DGYLYITDRIKDVIISGGENIYPRELEDALYG 439 (521)
T ss_pred CCCEEEeecccceEEcCCeEECHHHHHHHHHh
Confidence 56688999999985444444445556555544
No 104
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=26.24 E-value=57 Score=23.91 Aligned_cols=33 Identities=9% Similarity=-0.009 Sum_probs=23.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++.+|..+
T Consensus 422 ~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~ 454 (536)
T PRK10946 422 DGYITVVGREKDQINRGGEKIAAEEIENLLLRH 454 (536)
T ss_pred CCcEEEeccccceeecCCEEEcHHHHHHHHHhC
Confidence 567999999999865455555666777777653
No 105
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=26.17 E-value=40 Score=24.78 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=23.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.+.+.||.||.-...+..+.-..++++|.++
T Consensus 444 ~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~ 476 (563)
T PRK06710 444 DGFFYVKDRKKDMIVASGFNVYPREVEEVLYEH 476 (563)
T ss_pred CCcEEEeeccccEEEECCEEECHHHHHHHHHhC
Confidence 556899999999754444445566777877654
No 106
>TIGR00296 uncharacterized protein, PH0010 family. Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.
Probab=25.70 E-value=1.5e+02 Score=20.27 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCC-CC-CC-----CCCCcceeeee
Q 035382 31 RDIRLAIECVLSGQPV-SS-NQ-----KPSVGCSIKWH 61 (66)
Q Consensus 31 ~~L~~Ai~allaG~~v-~~-~~-----t~s~GCsIKw~ 61 (66)
.+.++||++-|.++++ +. +. ..+.||-+.|+
T Consensus 14 ~lAr~ai~~~l~~~~~~~~~~~~p~~l~~~~g~FVTl~ 51 (200)
T TIGR00296 14 RYARYAIESHLNGGKSSRLYPDLPIVFNEKRGVFITLK 51 (200)
T ss_pred HHHHHHHHHHHccCCCCCCCccCChhhCCcccEEEEEE
Confidence 4788999988876542 11 12 45889999996
No 107
>PLN02614 long-chain acyl-CoA synthetase
Probab=25.54 E-value=65 Score=24.93 Aligned_cols=32 Identities=9% Similarity=-0.158 Sum_probs=24.0
Q ss_pred CcEEEEeeeccCCCC-CCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~-~~~~~~~~~~L~~Ai~a 39 (66)
+|.|.+.||.||.-. ..+..+.-.+++++|.+
T Consensus 509 dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~ 541 (666)
T PLN02614 509 NGSMKIIDRKKNIFKLSQGEYVAVENIENIYGE 541 (666)
T ss_pred CCCEEEEEcchhceecCCCeeecHHHHHHHHhc
Confidence 567999999999964 34566677778777754
No 108
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=25.50 E-value=1.4e+02 Score=20.99 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=28.0
Q ss_pred CCcEEEEeeeccCCCCCC-CCCCcHHHHHHHHHHHHcCCCCCC
Q 035382 7 RPFQLVYHGQFDDSRPSN-NLPVTGRDIRLAIECVLSGQPVSS 48 (66)
Q Consensus 7 ~~~~L~Y~GrIDD~~~~~-~~~~~~~~L~~Ai~allaG~~v~~ 48 (66)
-+++++|-|+|+...... ..-....+|-++|+.--.-...|.
T Consensus 61 ~ef~Vkyvg~i~~l~~~~~~~le~pl~lI~~ID~aQq~GkLP~ 103 (200)
T PF10480_consen 61 AEFRVKYVGAIESLQFSMSKSLEGPLELINYIDSAQQDGKLPF 103 (200)
T ss_pred hheeeeeeeehhhcccccccccccHHHHHHHHHHHhhcCcCCC
Confidence 389999999999874211 112244578888887765555554
No 109
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=25.41 E-value=64 Score=24.96 Aligned_cols=33 Identities=9% Similarity=-0.156 Sum_probs=24.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||+||.-...+..+.-.+++++|...
T Consensus 604 dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~ 636 (718)
T PRK08043 604 QGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGV 636 (718)
T ss_pred CCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhC
Confidence 567999999999865555556667777776543
No 110
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=25.38 E-value=54 Score=23.56 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=23.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.+.||+||.....+..+.-.+++.+|..
T Consensus 382 ~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~ 413 (502)
T PRK08276 382 DGYLYLTDRKSDMIISGGVNIYPQEIENLLVT 413 (502)
T ss_pred CcCEEEeccCcceEEeCCEEeCHHHHHHHHHh
Confidence 45689999999986555556667788888754
No 111
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=25.36 E-value=1.6e+02 Score=17.69 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=30.0
Q ss_pred EEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 035382 10 QLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 10 ~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~ 63 (66)
+++|-|-|--. +-+....+-.+|++.|..+..++-++...- .|||++.
T Consensus 4 K~~~g~DiR~~-~~~~~~~t~~~L~~~v~~~F~~~~~~~~~f-----lIKYkD~ 51 (81)
T cd06401 4 KAQLGDDIRRI-PIHNEDITYDELLLMMQRVFRGKLGSSDDV-----LIKYKDE 51 (81)
T ss_pred EEEeCCeEEEE-eccCccccHHHHHHHHHHHhccccCCcccE-----EEEEECC
Confidence 56665444222 111123578899999999999876444443 8888764
No 112
>PF01871 AMMECR1: AMMECR1; InterPro: IPR002733 The contiguous gene deletion syndrome is characterised by Alport syndrome (A), mental retardation (M), midface hypoplasia (M), and elliptocytosis (E), as well as generalized hypoplasia and cardiac abnormalities. It is caused by a deletion in Xq22.3, comprising several genes including AMME chromosomal region gene 1 (AMMECR1), which encodes a protein with a nuclear location and presently unknown function. The C-terminal region of AMMECR1 (from residue 122 to 333) is well conserved, and homologues appear in species ranging from bacteria and archaea to eukaryotes. The high level of conservation of the AMMECR1 domain points to a basic cellular function, potentially in either the transcription, replication, repair or translation machinery [, ]. The AMMECR1 domain contains a 6-amino-acid motif (LRGCIG) that might be functionally important since it is strikingly conserved throughout evolution []. The AMMECR1 domain consists of two distinct subdomains of different sizes. The large subdomain, which contains both the N- and C-terminal regions, consists of five alpha-helices and five beta-strands. These five beta-strands form an antiparallel beta-sheet. The small subdomain consists of four alpha-helices and three beta-strands, and these beta-strands also form an antiparallel beta-sheet. The conserved 'LRGCIG' motif is located at beta(2) and its N-terminal loop, and most of the side chains of these residues point toward the interface of the two subdomains. The two subdomains are connected by only two loops, and the interaction between the two subdomains is not strong. Thus, these subdomains may move dynamically when the substrate enters the cleft. The size of the cleft suggests that the substrate is large, e.g., the substrate may be a nucleic acid or protein. However, the inner side of the cleft is not filled with positively charged residues, and therefore it is unlikely that negatively charged nucleic acids such as DNA or RNA interact at this site []. ; PDB: 1WSC_B 1VAJ_A 1ZQ7_D.
Probab=25.04 E-value=57 Score=21.66 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCCC-------CCCCCCCCcceeeeeC
Q 035382 31 RDIRLAIECVLSGQPV-------SSNQKPSVGCSIKWHP 62 (66)
Q Consensus 31 ~~L~~Ai~allaG~~v-------~~~~t~s~GCsIKw~~ 62 (66)
.+.++||.+-|.++++ +..-..+.||-|.|+-
T Consensus 3 ~~Ar~ai~~~l~~~~~~~~~~~~~~~l~~~~g~FVTl~~ 41 (171)
T PF01871_consen 3 RLAREAIESYLRGGPLPPPPPPLPPELSEPRGVFVTLKK 41 (171)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCT--GGGGSBEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCChhhcCceeEEEEEEE
Confidence 4688999999998885 1223447899999863
No 113
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=24.61 E-value=49 Score=20.20 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=9.6
Q ss_pred cCCCCCcEEEEeee
Q 035382 3 QDGRRPFQLVYHGQ 16 (66)
Q Consensus 3 ~~~~~~~~L~Y~Gr 16 (66)
.+|| .|+|.|+|.
T Consensus 91 ~eGd-~G~Lt~QGt 103 (110)
T PF10694_consen 91 AEGD-KGTLTYQGT 103 (110)
T ss_dssp -TT--EEEEEEETT
T ss_pred CCCC-EEEEEEeCC
Confidence 5688 999999995
No 114
>PLN02574 4-coumarate--CoA ligase-like
Probab=24.51 E-value=49 Score=24.48 Aligned_cols=33 Identities=6% Similarity=0.025 Sum_probs=24.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++.+|..+
T Consensus 443 ~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~ 475 (560)
T PLN02574 443 DGYLYIVDRLKEIIKYKGFQIAPADLEAVLISH 475 (560)
T ss_pred CCeEEEEecchhheEECCEEECHHHHHHHHHhC
Confidence 567999999999866555556667777777653
No 115
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=24.48 E-value=34 Score=21.10 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCC-CCCCCCCCCCcceeeeeCC
Q 035382 31 RDIRLAIECVLSGQ-PVSSNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 31 ~~L~~Ai~allaG~-~v~~~~t~s~GCsIKw~~~ 63 (66)
..++++|.+++.-+ ...+...++-||..|...+
T Consensus 2 e~I~~~~~~~~~~R~~~qP~~~~saGS~FkNP~~ 35 (105)
T PF02873_consen 2 EEIREAMQEIRRKRKLKQPLELPSAGSVFKNPPG 35 (105)
T ss_dssp HHHHHHHHHHHHHHHCHSTTTSCEEEESB---TT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcceeeeCCCc
Confidence 36788999999877 5555678999999886543
No 116
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=24.42 E-value=1.5e+02 Score=19.33 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=18.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 45 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~ 45 (66)
+|+++|+|-+ .+.+.+++.++++.+|-+
T Consensus 156 ~G~I~~~g~~----------~~~~~le~ll~~l~~~~~ 183 (189)
T TIGR02661 156 DGKIRAKGLT----------NTREHLESLLEADREGFA 183 (189)
T ss_pred CCeEEEccCC----------CCHHHHHHHHHHHHcCcc
Confidence 5667776532 245678999998877643
No 117
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=24.26 E-value=46 Score=24.41 Aligned_cols=33 Identities=3% Similarity=0.005 Sum_probs=24.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++.+|..+
T Consensus 430 dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 462 (546)
T PLN02330 430 DGDIFIVDRIKELIKYKGFQVAPAELEAILLTH 462 (546)
T ss_pred CCcEEEEechHHhhhcCCEEECHHHHHHHHHhC
Confidence 567999999999865555556677788877653
No 118
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=24.21 E-value=46 Score=22.28 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=11.5
Q ss_pred CCCCCCCcceeeeeCC
Q 035382 48 SNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 48 ~~~t~s~GCsIKw~~~ 63 (66)
--.--|+||.|+-+..
T Consensus 23 L~kGdsYGC~I~lk~~ 38 (149)
T PF03287_consen 23 LHKGDSYGCTIKLKSK 38 (149)
T ss_pred cccCcccCEEEEEEeC
Confidence 3345689999998643
No 119
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=23.87 E-value=51 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 035382 31 RDIRLAIECVLSGQPVSS 48 (66)
Q Consensus 31 ~~L~~Ai~allaG~~v~~ 48 (66)
..+++||++|.+|++|-+
T Consensus 14 ~~i~~ai~al~~G~~Viv 31 (214)
T PRK01792 14 ERVINAINAFKQGNGVLV 31 (214)
T ss_pred ccHHHHHHHHHCCCeEEE
Confidence 459999999999998764
No 120
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=23.81 E-value=72 Score=22.64 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCCCCCC
Q 035382 31 RDIRLAIECVLSGQPVSSN 49 (66)
Q Consensus 31 ~~L~~Ai~allaG~~v~~~ 49 (66)
..+++||++|.+|++|-+-
T Consensus 19 ~~i~~ai~al~~Gk~Viv~ 37 (230)
T PRK00014 19 TRLERALQHLRIGRPVILM 37 (230)
T ss_pred hhHHHHHHHHHCCCeEEEE
Confidence 4599999999999998653
No 121
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=23.68 E-value=51 Score=23.11 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCCCCC
Q 035382 33 IRLAIECVLSGQPVSS 48 (66)
Q Consensus 33 L~~Ai~allaG~~v~~ 48 (66)
+++||++|.+|++|-+
T Consensus 3 ie~ai~al~~G~~Viv 18 (219)
T PRK05773 3 FEEARKALESGIPVLI 18 (219)
T ss_pred HHHHHHHHHCCCeEEE
Confidence 6789999999999854
No 122
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=23.43 E-value=61 Score=24.02 Aligned_cols=32 Identities=16% Similarity=-0.020 Sum_probs=22.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||.||.-...+..+.-.+++.+|.+
T Consensus 443 dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~ 474 (576)
T PRK05620 443 DGFLTIHDRARDVIRSGGEWIYSAQLENYIMA 474 (576)
T ss_pred CceEEEEechhhhhhcCCEEEcHHHHHHHHhc
Confidence 56799999999885544445556677777755
No 123
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=23.19 E-value=50 Score=24.13 Aligned_cols=33 Identities=9% Similarity=-0.080 Sum_probs=24.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++.+|.++
T Consensus 430 ~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~ 462 (538)
T TIGR03208 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQH 462 (538)
T ss_pred CCcEEEEeccCceEEECCEEECHHHHHHHHhcC
Confidence 567999999998865455556677788877653
No 124
>PRK13599 putative peroxiredoxin; Provisional
Probab=22.82 E-value=2.2e+02 Score=19.27 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=25.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 62 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~ 62 (66)
+++|+|....... . .....++.++|++|.. .....+-|...|.+
T Consensus 128 dG~Ir~~~~~p~~----~-gr~~~eilr~l~~lq~------~~~~~~~~p~~w~~ 171 (215)
T PRK13599 128 KGTIRLIMYYPQE----V-GRNVDEILRALKALQT------ADQYGVALPEKWPN 171 (215)
T ss_pred CCEEEEEEEcCCC----C-CCCHHHHHHHHHHhhh------hhhcCCCcCCCCCC
Confidence 6778887542221 1 1245567777777633 22236778899976
No 125
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=22.77 E-value=27 Score=23.91 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCccee
Q 035382 32 DIRLAIECVLSGQPVSSNQKPSVGCSI 58 (66)
Q Consensus 32 ~L~~Ai~allaG~~v~~~~t~s~GCsI 58 (66)
.++.++++|+.--+....+.--+|||.
T Consensus 2 q~~~~~~El~~~a~l~~g~i~VvGcST 28 (172)
T PF04260_consen 2 QLRQALEELLEQANLKPGQIFVVGCST 28 (172)
T ss_dssp -HHHHHHHHHHHS---TT-EEEEEE-H
T ss_pred hHHHHHHHHHHhcCCCCCCEEEEeeeH
Confidence 578999999999999999999999984
No 126
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.42 E-value=1.3e+02 Score=19.59 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=28.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCccee
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSI 58 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsI 58 (66)
.+.+.|-|.+.=. .+....-+.+||..+++.........++.-|.+
T Consensus 4 ~f~vkyLGsveV~-----~~kG~~v~~~A~rki~~~~k~~~~~~~~~~v~L 49 (148)
T cd01212 4 RFLLGYLGSVEVL-----AHKGNGVLCQAMRKIVGEYKNSEESPTPQTCIL 49 (148)
T ss_pred eEEeEecceEEec-----CCCCcHHHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 5788999987322 233455678899888865544333334444544
No 127
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=22.28 E-value=41 Score=17.71 Aligned_cols=10 Identities=40% Similarity=1.022 Sum_probs=7.8
Q ss_pred CcEEEEeeec
Q 035382 8 PFQLVYHGQF 17 (66)
Q Consensus 8 ~~~L~Y~GrI 17 (66)
.|+|.|||..
T Consensus 11 ~F~~~~rg~~ 20 (54)
T PF03633_consen 11 SFRLRYRGHW 20 (54)
T ss_dssp EEEEEETTEE
T ss_pred EEEEEECCEE
Confidence 5789999973
No 128
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=22.16 E-value=57 Score=22.49 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCCCCCC
Q 035382 32 DIRLAIECVLSGQPVSSN 49 (66)
Q Consensus 32 ~L~~Ai~allaG~~v~~~ 49 (66)
-+++||++|.+|++|-+-
T Consensus 4 ~ie~ai~al~~G~~Viv~ 21 (199)
T TIGR00506 4 RVEEALEALKKGEIVLVY 21 (199)
T ss_pred hHHHHHHHHHCCCeEEEE
Confidence 478999999999998653
No 129
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.01 E-value=1.8e+02 Score=18.49 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=22.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeee
Q 035382 28 VTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWH 61 (66)
Q Consensus 28 ~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~ 61 (66)
.+..+|..|++++.+| ++...- -|+-+|++
T Consensus 18 ~sd~~L~~ai~el~~G-~~~adL---GGgv~K~R 47 (120)
T PF06296_consen 18 LSDDDLCEAIEELEQG-LIDADL---GGGVRKKR 47 (120)
T ss_pred CCHHHHHHHHHHHHhC-Ccccch---hccEEEEE
Confidence 5678999999999999 444332 36777775
No 130
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=21.90 E-value=1.3e+02 Score=21.71 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCC
Q 035382 27 PVTGRDIRLAIECVLSGQPVSSN 49 (66)
Q Consensus 27 ~~~~~~L~~Ai~allaG~~v~~~ 49 (66)
|.+...+++|+.+||.|+.+..+
T Consensus 137 PP~~e~I~~al~all~ge~p~l~ 159 (247)
T COG1941 137 PPSPEEIARALTALLEGEEPELS 159 (247)
T ss_pred CcCHHHHHHHHHHHHcCCCcccC
Confidence 44788999999999999998543
No 131
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=21.90 E-value=77 Score=24.56 Aligned_cols=32 Identities=6% Similarity=-0.143 Sum_probs=21.8
Q ss_pred CcEEEEeeeccCCCC-CCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~-~~~~~~~~~~L~~Ai~a 39 (66)
+|.|.|.||.||.-. ..+..+.-..+++++..
T Consensus 549 dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~ 581 (700)
T PTZ00216 549 NGTLRIIGRVKALAKNCLGEYIALEALEALYGQ 581 (700)
T ss_pred CCcEEEEEehHhheecCCCceeccHHHHHHHhc
Confidence 577999999999853 34444555566666644
No 132
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=21.80 E-value=35 Score=23.06 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.1
Q ss_pred CCCcceeeeeCCC
Q 035382 52 PSVGCSIKWHPQT 64 (66)
Q Consensus 52 ~s~GCsIKw~~~~ 64 (66)
.+-||.|+|++++
T Consensus 111 ~~~~t~I~Wk~gk 123 (185)
T PTZ00008 111 VVEVTKIKWKEGK 123 (185)
T ss_pred eeeeeecccCCCC
Confidence 3567999999864
No 133
>PLN02736 long-chain acyl-CoA synthetase
Probab=21.73 E-value=88 Score=23.84 Aligned_cols=32 Identities=6% Similarity=-0.135 Sum_probs=23.0
Q ss_pred CcEEEEeeeccCCCC-CCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~-~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||+||.-. ..+..+.-.+++++|..
T Consensus 500 dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~ 532 (651)
T PLN02736 500 GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAK 532 (651)
T ss_pred CCcEEEEEechhheEcCCCcEechHHHHHHHhc
Confidence 567999999999964 24555666677776654
No 134
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=21.62 E-value=67 Score=23.60 Aligned_cols=33 Identities=9% Similarity=-0.087 Sum_probs=24.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.+.+.||.||.-...+..+.-.+++++|..+
T Consensus 448 ~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~ 480 (557)
T PRK07059 448 RGYTKIVDRKKDMILVSGFNVYPNEIEEVVASH 480 (557)
T ss_pred CCcEEEecccccceEECCEEEcHHHHHHHHHhC
Confidence 456889999999865555566677888888664
No 135
>PRK13388 acyl-CoA synthetase; Provisional
Probab=21.55 E-value=57 Score=24.07 Aligned_cols=33 Identities=9% Similarity=-0.004 Sum_probs=23.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||.||.-...+..+.-.+++.+|.++
T Consensus 393 dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 425 (540)
T PRK13388 393 DGWIYFAGRTADWMRVDGENLSAAPIERILLRH 425 (540)
T ss_pred CCcEEEeccCCceEEECCEEeCHHHHHHHHHhC
Confidence 567999999998854444455666777776653
No 136
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=21.40 E-value=61 Score=17.81 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcce
Q 035382 32 DIRLAIECVLSGQPVSSNQKPSVGCS 57 (66)
Q Consensus 32 ~L~~Ai~allaG~~v~~~~t~s~GCs 57 (66)
|=++||.+++. .-...+=|..||+
T Consensus 34 fek~aI~~~i~--~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 34 FEKEAILQYIQ--RNGSKRCPVAGCN 57 (57)
T ss_dssp EEHHHHHHHCT--TTS-EE-SCCC-S
T ss_pred ecHHHHHHHHH--hcCCCCCCCCCCC
Confidence 56789999992 2233445666775
No 137
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=21.37 E-value=70 Score=19.00 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHHH---cCCCCCCCCCCCCccee
Q 035382 28 VTGRDIRLAIECVL---SGQPVSSNQKPSVGCSI 58 (66)
Q Consensus 28 ~~~~~L~~Ai~all---aG~~v~~~~t~s~GCsI 58 (66)
.+...|++|+.++| ....+..-..|.+||.+
T Consensus 88 ~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~ 121 (133)
T smart00506 88 EGFELLENAYRNCLELAIELGITSVAIPLIGTGI 121 (133)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCC
Confidence 46678999999886 34556677788899876
No 138
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=21.36 E-value=1.2e+02 Score=18.14 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=16.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 38 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~ 38 (66)
+++|+|+....+..+. ....+..+|+
T Consensus 123 ~G~v~~~~~~~~~~~~-----~~~~~~~~~~ 148 (149)
T cd03018 123 DGIIRYAWVSDDGEPR-----DLPDYDEALD 148 (149)
T ss_pred CCEEEEEEecCCcccc-----cchhHHHHhh
Confidence 6789999888775422 2335555554
No 139
>PRK07787 acyl-CoA synthetase; Validated
Probab=21.30 E-value=59 Score=23.32 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=22.6
Q ss_pred CcEEEEeeec-cCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQF-DDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrI-DD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.+.||. |+.-...+..+.-.+++++|.++
T Consensus 363 dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~ 396 (471)
T PRK07787 363 DGMHRIVGRESTDLIKSGGYRIGAGEIETALLGH 396 (471)
T ss_pred CCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhC
Confidence 5669999997 66644445556667777777653
No 140
>PF03784 Cyclotide: Cyclotide family; InterPro: IPR005535 Cyclotides (cyclo peptides) are plant peptides of ~30 amino acids with a head to-tail cyclic backbone and six cysteine residues involved in three disulphide bonds. The cyclotides are extremely resistant to proteolysis and are remarkably stable. Cyclotides display a diverse range of biological activities, including uterotonic activity, inhibition of neurotensin binding, hemolytic, anti-HIV and anti-microbial activity. This range of biological activities makes cyclotides amenable to potential pharmaceutical and agricultural applications. Although their precise role in plants has not yet been reported, it appears that they are most likely present as defence molecules [, , , ]. The three-dimensional structure of cyclotides is compact and contains a number of beta-turns, three beta strands arranged in a distorted triple-stranded beta-sheet, a short helical segment, and a network of disulphide bonds which form a cystine knot. The cystine knot consists of an embedded ring in the structure, formed by two disulphide bonds and their connecting backbone segments is threaded by a third disulphide bond. Although the cystine knot motif is now well known in a wide variety of proteins, the cyclotides remain as the only example in which a cystine knot is embedded within a circular protein backbone, a motif that is referred to as the cyclic cystine knot (CCK) [, , , ]. Cyclotides can be separated into two sub-families, one of which tends to contain a larger number of positively charged residues and has a bracelet-like circularisation of the backbone. The second subfamily contains a backbone twist due to a cis-Pro peptide bond and may conceptually be regarded as a molecular Moebius strip [, ]. Bracelet and Moebius families of cyclotides possess a Knottin scaffold. The cyclotide family of proteins is abundant in plants from the Rubiaceae and Violaceae families and includes: Kalata B1. Circulins. Cyclopsychotride A. Cycloviolacin O1. ; GO: 0006952 defense response; PDB: 2ERI_A 2KHB_A 1K48_A 1ZNU_A 1N1U_A 2F2J_A 1ORX_A 1NB1_A 1KAL_A 2F2I_A ....
Probab=21.27 E-value=42 Score=16.74 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=9.3
Q ss_pred CCCCCcceeeee
Q 035382 50 QKPSVGCSIKWH 61 (66)
Q Consensus 50 ~t~s~GCsIKw~ 61 (66)
-|..+|||=||+
T Consensus 14 ~t~~~GCsC~~~ 25 (30)
T PF03784_consen 14 ITYTPGCSCKNK 25 (30)
T ss_dssp SGSSTTEEEETT
T ss_pred eCCCCCcccCCC
Confidence 356789999875
No 141
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=21.20 E-value=83 Score=23.22 Aligned_cols=32 Identities=9% Similarity=-0.087 Sum_probs=22.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||.||.-...+..+.-.+++.+|..
T Consensus 454 ~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~ 485 (562)
T PRK12492 454 DGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMA 485 (562)
T ss_pred CCeEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence 56799999999986544444555667776644
No 142
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=21.10 E-value=58 Score=23.25 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=22.7
Q ss_pred EEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 10 QLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 10 ~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
.|.+.||+||.-...+..+.-.+++++|..+
T Consensus 388 ~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~ 418 (502)
T TIGR01734 388 QLFYQGRLDFQIKLHGYRIELEDIEFNLRQS 418 (502)
T ss_pred EEEEeccccCeEEECcEEeCHHHHHHHHHcC
Confidence 7899999998865555556666777777654
No 143
>PRK05857 acyl-CoA synthetase; Validated
Probab=21.08 E-value=81 Score=23.21 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=22.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||.||.-...+..+.-.+++.+|..
T Consensus 415 ~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 446 (540)
T PRK05857 415 DGFFYIKGRSSEMIICGGVNIAPDEVDRIAEG 446 (540)
T ss_pred CceEEEeccccccEecCCEEECHHHHHHHHHh
Confidence 55689999999986555555566667776654
No 144
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=20.99 E-value=82 Score=23.09 Aligned_cols=32 Identities=6% Similarity=-0.102 Sum_probs=23.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.+.+.||.||.-...+..+.-.+++++|.+
T Consensus 412 ~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 443 (542)
T PRK07786 412 EGYVWVVDRKKDMIISGGENIYCAEVENVLAS 443 (542)
T ss_pred CceEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 56788999999986544445566677777755
No 145
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=20.98 E-value=62 Score=22.70 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCCCCCC
Q 035382 31 RDIRLAIECVLSGQPVSSN 49 (66)
Q Consensus 31 ~~L~~Ai~allaG~~v~~~ 49 (66)
..+++||++|.+|++|-+-
T Consensus 15 ~~ie~ai~al~~G~~Viv~ 33 (218)
T PRK00910 15 TRVENALQALREGRGVLLL 33 (218)
T ss_pred ccHHHHHHHHHCCCeEEEE
Confidence 3589999999999998653
No 146
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=20.98 E-value=1.5e+02 Score=17.34 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHcCC-CCCCCCCCCCcceeee
Q 035382 29 TGRDIRLAIECVLSGQ-PVSSNQKPSVGCSIKW 60 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~-~v~~~~t~s~GCsIKw 60 (66)
-...|.++|.+||-|+ -+.....-++|=+|+.
T Consensus 49 ~~~~v~~~L~~lLg~~~~~~~~v~tp~gy~iD~ 81 (93)
T PF08368_consen 49 LQQEVQEALKSLLGGENYFRSNVITPYGYTIDF 81 (93)
T ss_pred HHHHHHHHHHHHhCCccceEEccccCCCceEEE
Confidence 4678999999999655 5777888889988875
No 147
>PHA02854 putative host range protein; Provisional
Probab=20.80 E-value=59 Score=22.39 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=13.1
Q ss_pred CCCCCCCCCCcceeeeeCC
Q 035382 45 PVSSNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 45 ~v~~~~t~s~GCsIKw~~~ 63 (66)
.+..-.--|+||.|+-+..
T Consensus 20 nv~L~kGdSYGC~I~Lk~~ 38 (178)
T PHA02854 20 NVELFKGNSYGCFINLKVK 38 (178)
T ss_pred ccccccCCccCEEEEEEeC
Confidence 3444455799999998643
No 148
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=20.75 E-value=59 Score=18.79 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHHHc---CCCCCCCCCCCCccee
Q 035382 27 PVTGRDIRLAIECVLS---GQPVSSNQKPSVGCSI 58 (66)
Q Consensus 27 ~~~~~~L~~Ai~alla---G~~v~~~~t~s~GCsI 58 (66)
..+...|++|++.+|. ...+..-..|.+||-+
T Consensus 72 ~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~ 106 (118)
T PF01661_consen 72 KNSYEALESAYRNALQKAEENGIKSIAFPAIGTGI 106 (118)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSST
T ss_pred cccHHHHHHHHHHHHHHHHHcCCcccccCcccCCC
Confidence 4577889998888763 5666666778888865
No 149
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=20.70 E-value=97 Score=16.05 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHHHc
Q 035382 29 TGRDIRLAIECVLS 42 (66)
Q Consensus 29 ~~~~L~~Ai~alla 42 (66)
....|+.||+.+|.
T Consensus 28 ~S~Ll~eAle~~l~ 41 (44)
T PF12651_consen 28 KSKLLREALEDYLE 41 (44)
T ss_pred HHHHHHHHHHHHHH
Confidence 46689999999985
No 150
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=20.54 E-value=1e+02 Score=26.41 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 035382 26 LPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 26 ~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~ 63 (66)
.-||-.++|.||.++-. .=|-.+-||-|.|+.+
T Consensus 493 iNVTPdFVRsAV~E~St-----KfQLSpDGrKIRWRGG 525 (989)
T PF09421_consen 493 INVTPDFVRSAVSEKST-----KFQLSPDGRKIRWRGG 525 (989)
T ss_pred hccCHHHHHHHHHhccc-----ceeeCCCCCeeeecCC
Confidence 45889999999998754 3456788999999865
No 151
>cd01213 tensin Tensin Phosphotyrosine-binding (PTB) domain. Tensin Phosphotyrosine-binding (PTB) domain. Tensin is a a focal adhesion protein, which contains a C-terminal SH2 domain followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.45 E-value=2.3e+02 Score=18.43 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=27.8
Q ss_pred cCCCCCcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCC
Q 035382 3 QDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSS 48 (66)
Q Consensus 3 ~~~~~~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~ 48 (66)
+.|. .-.+.|-|.+|=.. ..+..-+..||..+++.++++.
T Consensus 3 ~qga-a~nv~yLgS~eves-----ltg~~av~kAv~~~l~~~~~~~ 42 (138)
T cd01213 3 AQGA-ACNVLYLGSVDTES-----LTGNEAIKKAIAQCSGQAPDPQ 42 (138)
T ss_pred cccc-ccceeeeeeEeecc-----ccCcHHHHHHHHHHHhcCCCCC
Confidence 3444 55688999986553 2345578999999998766443
No 152
>PHA02811 putative host range protein; Provisional
Probab=20.18 E-value=61 Score=22.63 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=13.2
Q ss_pred CCCCCCCCCCcceeeeeCC
Q 035382 45 PVSSNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 45 ~v~~~~t~s~GCsIKw~~~ 63 (66)
.+..-.--|+||.|+-+..
T Consensus 20 nv~L~kGdSYGC~I~Lk~~ 38 (197)
T PHA02811 20 NVELLKGDSYGCTINIKVN 38 (197)
T ss_pred ccccccCCccCeEEEEEeC
Confidence 3444456799999998643
Done!