Query 035382
Match_columns 66
No_of_seqs 126 out of 519
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5r_E Uncharacterized protein 99.5 2.6E-14 9E-19 93.8 6.1 57 7-63 152-208 (218)
2 2ywi_A Hypothetical conserved 99.2 1.1E-11 3.6E-16 78.3 5.5 56 8-63 140-195 (196)
3 2cvb_A Probable thiol-disulfid 99.2 1.8E-11 6E-16 77.2 5.0 56 8-64 126-181 (188)
4 1zye_A Thioredoxin-dependent p 96.8 0.0016 5.5E-08 42.4 4.5 46 8-64 156-201 (220)
5 2i81_A 2-Cys peroxiredoxin; st 96.8 0.00062 2.1E-08 44.3 2.2 46 8-64 151-196 (213)
6 1n8j_A AHPC, alkyl hydroperoxi 96.7 0.0012 4E-08 41.8 2.9 31 29-64 143-173 (186)
7 1qmv_A Human thioredoxin perox 96.5 0.0012 4E-08 41.7 1.9 30 29-64 150-179 (197)
8 2pn8_A Peroxiredoxin-4; thiore 96.3 0.0016 5.4E-08 42.3 1.9 46 8-64 148-193 (211)
9 3ztl_A Thioredoxin peroxidase; 96.3 0.0003 1E-08 45.8 -1.8 46 8-64 169-214 (222)
10 2h01_A 2-Cys peroxiredoxin; th 95.6 0.0046 1.6E-07 38.7 1.8 46 8-64 130-175 (192)
11 2c0d_A Thioredoxin peroxidase 95.2 0.01 3.5E-07 38.9 2.4 46 8-64 155-200 (221)
12 1uul_A Tryparedoxin peroxidase 95.1 0.0095 3.3E-07 37.7 1.8 46 8-64 136-181 (202)
13 3qpm_A Peroxiredoxin; oxidored 94.8 0.002 6.8E-08 42.8 -2.0 46 8-64 177-222 (240)
14 3tjj_A Peroxiredoxin-4; thiore 94.6 0.014 4.8E-07 39.2 1.9 46 8-64 191-236 (254)
15 1we0_A Alkyl hydroperoxide red 94.1 0.035 1.2E-06 34.3 2.8 31 29-64 144-174 (187)
16 2bmx_A Alkyl hydroperoxidase C 89.4 0.59 2E-05 29.0 4.4 26 29-64 157-182 (195)
17 2v2g_A Peroxiredoxin 6; oxidor 89.4 0.19 6.5E-06 33.3 2.2 46 8-64 136-181 (233)
18 1prx_A HORF6; peroxiredoxin, h 80.1 0.77 2.6E-05 29.9 1.7 46 8-64 140-185 (224)
19 3a2v_A Probable peroxiredoxin; 75.6 1.1 3.6E-05 30.2 1.4 43 8-62 133-175 (249)
20 1zof_A Alkyl hydroperoxide-red 75.2 2.7 9.1E-05 25.9 3.1 29 29-63 148-176 (198)
21 1xcc_A 1-Cys peroxiredoxin; un 70.7 2.1 7.3E-05 27.6 1.9 30 29-64 153-182 (220)
22 1q2j_A MU-conotoxin SMIIIA; HE 64.8 1.8 6.1E-05 20.4 0.4 15 52-66 6-20 (26)
23 2ia7_A Tail lysozyme, putative 59.8 11 0.00037 22.6 3.5 31 28-58 29-59 (134)
24 1za8_A VHL-1; circular protein 59.5 2.2 7.6E-05 20.9 0.2 12 50-61 12-23 (31)
25 2d1s_A Luciferase, luciferin 4 56.7 10 0.00034 27.0 3.4 32 8-39 431-462 (548)
26 3l8c_A D-alanine--poly(phospho 56.2 9.6 0.00033 26.6 3.1 32 8-39 393-424 (521)
27 4gs5_A Acyl-COA synthetase (AM 55.9 5 0.00017 27.3 1.6 32 11-42 243-274 (358)
28 3ite_A SIDN siderophore synthe 54.5 5 0.00017 28.5 1.5 33 8-40 417-449 (562)
29 1ry2_A Acetyl-coenzyme A synth 54.2 13 0.00044 27.4 3.7 32 8-39 516-547 (663)
30 3g7s_A Long-chain-fatty-acid-- 54.1 7.4 0.00025 27.6 2.3 32 8-39 429-460 (549)
31 2v7b_A Benzoate-coenzyme A lig 53.8 11 0.00039 26.4 3.2 32 8-39 419-450 (529)
32 3o83_A Peptide arylation enzym 53.0 5.5 0.00019 28.3 1.5 32 8-39 429-460 (544)
33 3ipl_A 2-succinylbenzoate--COA 50.6 10 0.00034 26.4 2.5 32 8-39 388-419 (501)
34 1mdb_A 2,3-dihydroxybenzoate-A 50.4 9.2 0.00031 27.1 2.3 32 8-39 420-451 (539)
35 4fuq_A Malonyl COA synthetase; 50.1 6 0.00021 27.8 1.3 32 8-39 389-420 (503)
36 3fce_A D-alanine--poly(phospho 49.7 7.5 0.00026 27.2 1.8 33 8-40 389-421 (512)
37 3ni2_A 4-coumarate:COA ligase; 49.7 6.3 0.00022 27.9 1.4 32 8-39 424-455 (536)
38 4gr5_A Non-ribosomal peptide s 49.3 6.3 0.00022 28.2 1.3 32 8-39 459-490 (570)
39 1pg4_A Acetyl-COA synthetase; 48.7 6.5 0.00022 28.8 1.3 33 8-40 507-539 (652)
40 3rix_A Luciferase, luciferin 4 47.0 6.3 0.00021 28.0 1.0 32 8-39 429-460 (550)
41 4dg8_A PA1221; ANL superfamily 45.8 5.9 0.0002 29.0 0.7 32 8-39 409-440 (620)
42 2e50_A Protein SET; histone ch 45.5 4.2 0.00015 27.2 -0.1 13 52-64 152-164 (225)
43 3c5e_A Acyl-coenzyme A synthet 45.3 7.4 0.00025 28.0 1.2 32 8-39 446-477 (570)
44 1t5h_X 4-chlorobenzoyl COA lig 45.1 8.2 0.00028 27.0 1.3 32 8-39 392-423 (504)
45 3gqw_A Fatty acid AMP ligase; 44.4 9.5 0.00033 26.8 1.6 33 8-40 451-483 (576)
46 3e7w_A D-alanine--poly(phospho 43.9 9.1 0.00031 26.8 1.4 33 8-40 388-420 (511)
47 3etc_A AMP-binding protein; ad 43.5 9.7 0.00033 27.5 1.6 32 8-39 465-496 (580)
48 4b2g_A GH3-1 auxin conjugating 43.1 33 0.0011 26.1 4.5 34 8-41 427-460 (609)
49 3rg2_A Enterobactin synthase c 42.9 7 0.00024 28.3 0.7 32 8-39 424-455 (617)
50 3r44_A Fatty acyl COA syntheta 42.6 9 0.00031 27.0 1.2 32 8-39 403-434 (517)
51 2cob_A LCOR protein; MLR2, KIA 42.3 19 0.00066 20.4 2.4 18 27-44 13-30 (70)
52 2ayu_A Nucleosome assembly pro 41.5 4.9 0.00017 29.5 -0.3 13 52-64 268-281 (417)
53 3dwv_A Glutathione peroxidase- 40.8 24 0.0008 21.4 2.9 18 29-46 170-187 (187)
54 3fs3_A Nucleosome assembly pro 40.4 5.3 0.00018 28.9 -0.2 13 52-64 194-206 (359)
55 4g2e_A Peroxiredoxin; redox pr 39.8 40 0.0014 19.8 3.8 30 7-40 127-156 (157)
56 3lor_A Thiol-disulfide isomera 39.2 45 0.0016 18.8 3.8 17 29-45 142-158 (160)
57 3tsy_A Fusion protein 4-coumar 37.2 14 0.00049 28.2 1.7 32 8-39 471-502 (979)
58 4epl_A Jasmonic acid-amido syn 37.1 44 0.0015 25.3 4.3 35 8-42 422-456 (581)
59 2zd7_A VPS75, vacuolar protein 35.7 6 0.00021 27.0 -0.6 13 51-63 139-151 (264)
60 1xzo_A BSSCO, hypothetical pro 33.3 65 0.0022 18.5 3.9 16 29-44 159-174 (174)
61 1v25_A Long-chain-fatty-acid-C 32.6 6.8 0.00023 27.8 -0.7 33 8-40 425-457 (541)
62 1amu_A GRSA, gramicidin synthe 32.5 13 0.00045 26.6 0.8 32 8-39 420-451 (563)
63 1zq7_A Hypothetical protein MM 32.5 39 0.0013 22.4 3.0 32 31-62 12-53 (207)
64 2l0c_A Putative membrane prote 31.9 26 0.00087 20.7 1.9 14 2-16 63-76 (97)
65 2vsq_A Surfactin synthetase su 31.6 14 0.00048 29.5 0.8 33 8-40 851-883 (1304)
66 3ivr_A Putative long-chain-fat 31.3 19 0.00066 25.0 1.5 32 8-39 388-421 (509)
67 1wji_A Tudor domain containing 31.3 17 0.00058 19.6 0.9 28 29-56 33-60 (63)
68 4eql_A 4-substituted benzoates 30.6 33 0.0011 25.9 2.7 34 8-41 415-448 (581)
69 3tue_A Tryparedoxin peroxidase 30.3 13 0.00043 24.7 0.3 30 29-64 172-201 (219)
70 2dyq_A Amyloid beta A4 precurs 29.7 79 0.0027 19.8 4.0 36 7-47 16-51 (144)
71 3sbc_A Peroxiredoxin TSA1; alp 29.0 84 0.0029 20.6 4.2 30 29-64 168-197 (216)
72 2rdm_A Response regulator rece 28.6 49 0.0017 17.8 2.6 26 26-51 106-131 (132)
73 3nyq_A Malonyl-COA ligase; A/B 28.0 25 0.00084 24.7 1.5 32 8-39 395-427 (505)
74 3lua_A Response regulator rece 27.8 33 0.0011 18.9 1.8 27 27-53 111-137 (140)
75 3kyp_A Pfnaps, nucleosome asse 27.1 18 0.0006 23.5 0.6 12 53-64 124-135 (193)
76 3dxe_A Amyloid beta A4 protein 26.8 73 0.0025 19.7 3.5 33 8-45 9-41 (140)
77 2dsy_A Hypothetical protein TT 26.7 64 0.0022 18.0 3.0 24 29-52 49-77 (87)
78 3keb_A Probable thiol peroxida 26.5 1.1E+02 0.0037 20.0 4.5 32 7-42 145-176 (224)
79 1wgu_A APBB2, amyloid beta (A4 26.3 97 0.0033 18.9 3.9 36 4-44 13-48 (136)
80 1vaj_A Hypothetical protein PH 26.2 60 0.0021 21.5 3.1 31 31-61 15-52 (214)
81 3fkf_A Thiol-disulfide oxidore 24.7 68 0.0023 17.6 2.8 15 29-43 133-147 (148)
82 1hyw_A GPW, head-TO-tail joini 24.4 62 0.0021 17.9 2.5 29 32-62 9-37 (68)
83 2yt0_A Amyloid beta A4 protein 24.2 1.1E+02 0.0037 19.7 4.0 35 5-44 60-94 (176)
84 3t6k_A Response regulator rece 23.9 57 0.002 18.0 2.4 27 26-52 107-133 (136)
85 1rdu_A Conserved hypothetical 23.3 78 0.0027 17.9 2.9 16 31-46 92-107 (116)
86 3kvn_X Esterase ESTA; beta bar 22.9 35 0.0012 25.1 1.6 27 31-57 175-203 (632)
87 1i9w_A Fusion protein E1; enve 22.8 39 0.0013 24.7 1.8 27 36-62 239-265 (390)
88 3kxw_A Saframycin MX1 syntheta 22.8 12 0.00042 26.4 -0.8 30 8-37 448-477 (590)
89 3j0f_E E1 envelope glycoprotei 22.5 40 0.0014 25.0 1.8 27 36-62 239-265 (439)
90 1tks_A 3,4-dihydroxy-2-butanon 22.4 40 0.0014 22.5 1.7 18 32-49 7-24 (204)
91 1snn_A DHBP synthase, 3,4-dihy 22.1 41 0.0014 22.8 1.7 17 32-48 3-19 (227)
92 1dj0_A Pseudouridine synthase 22.1 1.5E+02 0.0053 19.8 4.6 37 9-46 8-45 (264)
93 1wvh_A Tensin, tensin1; beta s 21.2 1E+02 0.0035 19.1 3.3 37 8-49 3-39 (134)
94 3mio_A DHBP synthase, 3,4-dihy 21.0 44 0.0015 22.3 1.7 18 32-49 6-23 (206)
95 1g57_A DHBP synthase, 3,4-dihy 20.6 46 0.0016 22.3 1.7 20 30-49 13-32 (217)
96 1bh4_A Circulin A; cyclic pept 20.5 5.5 0.00019 19.3 -2.2 11 51-61 12-22 (30)
97 3kw6_A 26S protease regulatory 20.5 60 0.0021 17.1 1.9 18 27-44 60-77 (78)
98 1o13_A Probable NIFB protein; 20.2 55 0.0019 19.6 1.9 18 32-49 107-124 (136)
No 1
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=99.50 E-value=2.6e-14 Score=93.79 Aligned_cols=57 Identities=54% Similarity=0.994 Sum_probs=50.6
Q ss_pred CCcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 035382 7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 7 ~~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~ 63 (66)
.+|+|+|+|++|+.++......+..+|+++|+++|+|++++.++++++||+|+|+++
T Consensus 152 ~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~ 208 (218)
T 3u5r_E 152 RERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAG 208 (218)
T ss_dssp TTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC
T ss_pred CCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCC
Confidence 367799999999997655556678999999999999999999999999999999865
No 2
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=99.24 E-value=1.1e-11 Score=78.32 Aligned_cols=56 Identities=57% Similarity=1.121 Sum_probs=47.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~ 63 (66)
+|+++|+|.+|+.++......+..+|+++|++++++++++.++++++||+|+|+++
T Consensus 140 ~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~ 195 (196)
T 2ywi_A 140 DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKPS 195 (196)
T ss_dssp TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCC
T ss_pred CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccC
Confidence 67799999999885422223467899999999999999999999999999999875
No 3
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=99.20 E-value=1.8e-11 Score=77.20 Aligned_cols=56 Identities=34% Similarity=0.688 Sum_probs=47.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+|+++|+|.+|+.++. ....+..+|+++|++++++++++.++++++||+|+|++++
T Consensus 126 ~G~i~~~g~~~~~~~~-~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~ 181 (188)
T 2cvb_A 126 RRLLRYHGRVNDNPKD-PSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN 181 (188)
T ss_dssp TCBEEEEECSSSCTTC-GGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred CCcEEEEEecCCcccc-ccccCHHHHHHHHHHHHcCCCCCcccCCCCceEEEecCCC
Confidence 6779999999987532 2233566899999999999999999999999999998765
No 4
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=96.81 E-value=0.0016 Score=42.38 Aligned_cols=46 Identities=7% Similarity=0.000 Sum_probs=21.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+|+|+|+.. .+... .....+|.++|++|+.. +.++++|+++|+++.
T Consensus 156 ~G~I~~~~~-g~~~~----~~~~~ell~~l~~l~~~------~~~~~~cp~~W~~g~ 201 (220)
T 1zye_A 156 NGVIKHLSV-NDLPV----GRSVEETLRLVKAFQFV------EAHGEVSPANWTPES 201 (220)
T ss_dssp TSBEEEEEE-ECTTC----CCCHHHHHHHHHHHHHT------TC-------------
T ss_pred CCEEEEEEe-cCCCC----CCCHHHHHHHHHHhhhh------cccCCccCCCCCCCC
Confidence 567888753 22211 13567899999999975 467899999998764
No 5
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=96.76 E-value=0.00062 Score=44.27 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=32.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+++|+|+..-+.. . .....+|.++|++|+..+ +.++||++||+++.
T Consensus 151 ~G~i~~~~~~~~~-~----~~~~~ell~~l~~l~~~~------~~~~~cp~~w~~g~ 196 (213)
T 2i81_A 151 NGIVQHLLVNNLA-I----GRSVDEILRIIDAIQHHE------KYGDVCPANWQKGK 196 (213)
T ss_dssp TSBEEEEEEECTT-C----CCCHHHHHHHHHHHHHHH------HHCCBCCTTCCTTS
T ss_pred CCEEEEEEecCCC-C----CCCHHHHHHHHHHHHhhh------hcCCCcCCCCCcCC
Confidence 6778888642222 1 125678999999998543 46899999998764
No 6
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=96.67 E-value=0.0012 Score=41.76 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
....|.++|++|+. ..++|+.||+++|++++
T Consensus 143 ~~~~l~~~l~~l~~-----~~~~p~~~~p~~w~~~~ 173 (186)
T 1n8j_A 143 DASDLLRKIKAAQY-----VAAHPGEVCPAKWKEGE 173 (186)
T ss_dssp CHHHHHHHHHHHHH-----HHHSTTCBBCTTCCTTS
T ss_pred CHHHHHHHHHHHHH-----HhhcCCCccCCCCCCCC
Confidence 36689999999986 44577999999998764
No 7
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=96.45 E-value=0.0012 Score=41.73 Aligned_cols=30 Identities=10% Similarity=0.269 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
....+.++|+++..- .++++||+++|+++.
T Consensus 150 ~~~e~l~~l~~l~~~------~~~~~~cp~~w~~g~ 179 (197)
T 1qmv_A 150 SVDEALRLVQAFQYT------DEHGEVCPAGWKPGS 179 (197)
T ss_dssp CHHHHHHHHHHHHHH------HHHCCBBCTTCCTTS
T ss_pred CHHHHHHHHHhcchh------hccCCccCCCcCcCC
Confidence 456788888888653 367999999999764
No 8
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=96.31 E-value=0.0016 Score=42.25 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=31.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+|+|+|+..-+.. . ......|.++|++|+.. +++++||+++|++++
T Consensus 148 ~G~I~~~~~g~~~-~----~~~~~ell~~l~~l~~~------~~~~~~~p~~w~~g~ 193 (211)
T 2pn8_A 148 KGILRQITLNDLP-V----GRSVDETLRLVQAFQYT------DKHGEVCPAGWKPGS 193 (211)
T ss_dssp TSBEEEEEEECTT-B----CCCHHHHHHHHHHHHHH------HHHCCBBCTTCCTTS
T ss_pred CCEEEEEEecCCC-C----CCCHHHHHHHHHHhhhc------ccCCcccCCCCCCCC
Confidence 5678887532111 1 12466889999998864 556899999998764
No 9
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=96.26 E-value=0.0003 Score=45.85 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=25.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+|+|+|+-.-... .......+.++|+++ +.+ +++++||+|+|+++.
T Consensus 169 ~G~I~~~~~g~~~-----~~~~~~~il~~l~~l---~~~---~~~~~~c~~~w~~~~ 214 (222)
T 3ztl_A 169 NGILRQITINDKP-----VGRSVDETLRLLDAF---QFV---EKHGEVCPVNWKRGQ 214 (222)
T ss_dssp TSEEEEEEEECTT-----BCCCHHHHHHHHHHH---HHH---HHHSCBBCTTCCTTS
T ss_pred CCeEEEEEecCCC-----CCCCHHHHHHHHHHh---hcc---cccCccCCcCcCCCC
Confidence 5667776432111 011233444444444 333 577999999999764
No 10
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=95.65 E-value=0.0046 Score=38.71 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=31.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+|+|+|+..-+.. .......|.++|++|... ++.+.||+++|+++.
T Consensus 130 ~G~i~~~~~g~~~-----~~~~~~~l~~~l~~l~~~------~~~~~~cp~~w~~~~ 175 (192)
T 2h01_A 130 QGVVQHLLVNNLA-----LGRSVDEILRLIDALQHH------EKYGDVCPANWQKGK 175 (192)
T ss_dssp TSBEEEEEEGGGS-----SGGGHHHHHHHHHHHHHH------HHHCCCCCSSCCCC-
T ss_pred CCEEEEEEeCCCC-----CCCCHHHHHHHHHHHhhh------hhcCCCccCCCCCCC
Confidence 5668877542221 123567899999999854 345899999998764
No 11
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=95.22 E-value=0.01 Score=38.94 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=25.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+|+|+|+-.-+.. . ......|.++|++|+.. +..++||+++|+++.
T Consensus 155 ~G~I~~~~~g~~~-~----~~~~~ell~~l~~L~~~------~~~~~~cp~~W~~g~ 200 (221)
T 2c0d_A 155 NGCVRHQTVNDLP-I----GRNVQEVLRTIDSIIHV------DTSGEVCPINWKKGQ 200 (221)
T ss_dssp TSBEEEEEEECTT-C----CCCHHHHHHHHHHHHHH------HHHCCSCC-------
T ss_pred CCeEEEEEecCCC-C----CCCHHHHHHHHHHHhhh------hcCCCcCCCCCCCCC
Confidence 5678887421111 1 12467899999998864 446899999998754
No 12
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=95.05 E-value=0.0095 Score=37.69 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=31.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+|+|+|+- +.+.. . .....+|.++|++|+.. +....+|+++|+++.
T Consensus 136 ~G~i~~~~-~g~~~-~---~~~~~ell~~l~~l~~~------~~~~~~~p~~w~~g~ 181 (202)
T 1uul_A 136 KQNLRQIT-VNDLP-V---GRDVDEALRLVKAFQFV------EKHGEVCPANWKPGD 181 (202)
T ss_dssp TSBEEEEE-EECTT-B---CCCHHHHHHHHHHHHHH------HHHSCBBCTTCCTTS
T ss_pred CCEEEEEE-eCCCC-C---CCCHHHHHHHHHHhhhh------hhcCCccCCCcCCCC
Confidence 56677772 22221 1 12567899999999864 346899999998764
No 13
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=94.78 E-value=0.002 Score=42.84 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=27.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+|+|+|+..-+.. . .....++.++|++|.. +. ..++||+|+|++++
T Consensus 177 ~G~I~~~~~~~~~-~----~~~~~eil~~l~~lq~---~~---~~~~~cp~~W~~g~ 222 (240)
T 3qpm_A 177 KGVLRQITMNDLP-V----GRSVDETLRLVQAFQY---TD---KHGEVCPAGWKPGS 222 (240)
T ss_dssp TSBEEEEEEECTT-B----CCCHHHHHHHHHHHHH---HH---HHSCBBCTTCCTTS
T ss_pred CCeEEEEEecCCC-C----CCCHHHHHHHHHHhhh---hh---hcCCccCCCCCCCC
Confidence 6778887543222 1 1234566666666542 11 22899999999864
No 14
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=94.64 E-value=0.014 Score=39.25 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=17.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+|+|+|+-.-+.. . ......+.++|++|-.-. ..++||+|+|++++
T Consensus 191 ~G~I~~~~~~~~~-~----~~~~~eil~~L~alq~~~------~~~~~cp~~W~~g~ 236 (254)
T 3tjj_A 191 KGILRQITLNDLP-V----GRSVDETLRLVQAFQYTD------KHGEVAPAGWKPGS 236 (254)
T ss_dssp TSBEEEEEEECTT-C----CCCHHHHHHHHHHHHHHH------HHC-----------
T ss_pred CCeEEEEEecCCC-C----CCCHHHHHHHHHhhcccc------ccCccccCCCCCCC
Confidence 6678887543222 1 123455666666654221 12799999999864
No 15
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=94.11 E-value=0.035 Score=34.34 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+...|.++|++|+..+ +++..+|+++|.++.
T Consensus 144 ~~~~l~~~l~~l~~~~-----~~~~~~~p~~w~~~~ 174 (187)
T 1we0_A 144 DASTLINKVKAAQYVR-----ENPGEVCPAKWEEGG 174 (187)
T ss_dssp CTTHHHHHHHHHHHHH-----TSTTCCC--------
T ss_pred CHHHHHHHHHHHhhhh-----hCCCcccccccccCC
Confidence 3457899999998643 577899999998753
No 16
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=89.41 E-value=0.59 Score=29.00 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=12.2
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
....|.++|++|++ ..+|+++|+++.
T Consensus 157 ~~~~l~~~l~~l~~----------~~~~p~~w~~~~ 182 (195)
T 2bmx_A 157 NVDEVLRVLDALQS----------DELCASNWRKGD 182 (195)
T ss_dssp CHHHHHHHHHHHHC----------------------
T ss_pred CHHHHHHHHHHHhh----------CCCcCcccccCC
Confidence 46789999999997 348999998653
No 17
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=89.37 E-value=0.19 Score=33.29 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=30.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+++|+|.-.-+... .....+|.++|++|.... ...++|+++|+++.
T Consensus 136 ~G~I~~~~~~~~~~-----gr~~~eilr~l~~Lq~~~------~~~~~~p~~W~~g~ 181 (233)
T 2v2g_A 136 DKKLKLSILYPATT-----GRNFSEILRVIDSLQLTA------QKKVATPADWQPGD 181 (233)
T ss_dssp TSBEEEEEEECTTB-----CCCHHHHHHHHHHHHHHH------HSSEEBCTTCCTTS
T ss_pred CCEEEEEEecCCCC-----CCCHHHHHHHHHHHHhhc------cCCccCCCCcCcCC
Confidence 55666665432221 124678999999998653 34899999998764
No 18
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=80.05 E-value=0.77 Score=29.86 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=29.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
+++|+|+-.-+... .....+|..+|++|+... ...+.|.++|+++.
T Consensus 140 ~G~I~~~~~~~~~~-----gr~~~eil~~i~~l~~~~------~~~~~~p~~W~~g~ 185 (224)
T 1prx_A 140 DKKLKLSILYPATT-----GRNFDEILRVVISLQLTA------EKRVATPVDWKDGD 185 (224)
T ss_dssp TSBEEEEEECCTTB-----CCCHHHHHHHHHHHHHHH------HHCEEBCTTCCTTS
T ss_pred CCEEEEEEecCCCC-----CCCHHHHHHHHHHHHhhc------cCCcCCCCCCCCCC
Confidence 55666664322211 124678999999998753 23689999998764
No 19
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=75.57 E-value=1.1 Score=30.17 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=29.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 62 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~ 62 (66)
+++|+++..-+... ..+..+|..+|++|+... ....+|+++| +
T Consensus 133 dG~I~~~~~~~~~~-----gr~~~Ellr~I~alq~~~------~~~~~~Pa~W-~ 175 (249)
T 3a2v_A 133 RGVIRTMLYYPMEL-----GRLVDEILRIVKALKLGD------SLKRAVPADW-P 175 (249)
T ss_dssp TSBEEEEEEECTTB-----CCCHHHHHHHHHHHHHHH------HHTCBBCTTT-T
T ss_pred CCeEEEEEecCCcc-----cchhHHHHHHHHHHHhcc------ccCccCCCCC-C
Confidence 56677765433221 124678999999998754 2478999999 6
No 20
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=75.23 E-value=2.7 Score=25.90 Aligned_cols=29 Identities=10% Similarity=0.320 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 63 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~ 63 (66)
....|.++|++|...+ ....+|..+|.++
T Consensus 148 ~~~~l~~~l~~l~~~~------~~~~~~p~~w~~~ 176 (198)
T 1zof_A 148 NADEMLRMVDALLHFE------EHGEVCPAGWRKG 176 (198)
T ss_dssp HHHHHHHHHHHHHHHH------SSCCCCC------
T ss_pred CHHHHHHHHHHHHHhh------ccCCccCCcCcCC
Confidence 5678999999998633 3588899999764
No 21
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=70.73 E-value=2.1 Score=27.62 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
...+|..+|++|.... ...+.|.++|+++.
T Consensus 153 ~~~ell~~i~~lq~~~------~~~~~~p~~w~~g~ 182 (220)
T 1xcc_A 153 NAHEILRVLKSLQLTY------TTPVATPVNWNEGD 182 (220)
T ss_dssp CHHHHHHHHHHHHHHH------HSSEEBCTTCCTTS
T ss_pred CHHHHHHHHHHHHhhh------cCCcccCCCcCcCC
Confidence 4678999999997543 23788999998764
No 22
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=64.77 E-value=1.8 Score=20.36 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=11.8
Q ss_pred CCCcceeeeeCCCCC
Q 035382 52 PSVGCSIKWHPQTVQ 66 (66)
Q Consensus 52 ~s~GCsIKw~~~~~~ 66 (66)
.|-|||-+|-..++|
T Consensus 6 ~pngCs~rWCrdhar 20 (26)
T 1q2j_A 6 GRRGCSSRWCRDHSR 20 (26)
T ss_dssp SSSCCCSSSSSSSSS
T ss_pred CCCcccchhhcccce
Confidence 467999999777664
No 23
>2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
Probab=59.79 E-value=11 Score=22.63 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCCCccee
Q 035382 28 VTGRDIRLAIECVLSGQPVSSNQKPSVGCSI 58 (66)
Q Consensus 28 ~~~~~L~~Ai~allaG~~v~~~~t~s~GCsI 58 (66)
.....++++|..+|.-+.-+-...+.+||.+
T Consensus 29 ~~~~~I~qsI~~iL~T~~G~r~~~pdyGs~l 59 (134)
T 2ia7_A 29 SAEEDIAESIRIILGTARGERVMRPDFGCGI 59 (134)
T ss_dssp CHHHHHHHHHHHHHTCCTTSSTTCTTCSCGG
T ss_pred ccHHHHHHHHHHHHCCCCCCcccCcccCCCc
Confidence 4577899999999999999999999999986
No 24
>1za8_A VHL-1; circular protein, cyclic cystine knot motif, antiviral protein; NMR {Viola hederacea}
Probab=59.51 E-value=2.2 Score=20.87 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.2
Q ss_pred CCCCCcceeeee
Q 035382 50 QKPSVGCSIKWH 61 (66)
Q Consensus 50 ~t~s~GCsIKw~ 61 (66)
.|+.+|||=||+
T Consensus 12 ~T~~~GCsC~~~ 23 (31)
T 1za8_A 12 FTEVIGCSCKNK 23 (31)
T ss_dssp GGGTTTCEEETT
T ss_pred ccCCCCcccCCC
Confidence 578899999985
No 25
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=56.70 E-value=10 Score=27.03 Aligned_cols=32 Identities=3% Similarity=-0.016 Sum_probs=25.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 431 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 431 EKHFFIVDRLKSLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp TCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHT
T ss_pred CCeEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 46699999999997656666777788887765
No 26
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=56.17 E-value=9.6 Score=26.65 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=22.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.+.||+||.-...+..+.-.+++++|.+
T Consensus 393 dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp SSCEEEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred CCeEEEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 56699999999997666666777788888765
No 27
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=55.88 E-value=5 Score=27.25 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=25.2
Q ss_pred EEEeeeccCCCCCCCCCCcHHHHHHHHHHHHc
Q 035382 11 LVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 42 (66)
Q Consensus 11 L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~alla 42 (66)
+.|.||.||.-...+..+.-.+++++|.+++.
T Consensus 243 ~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~ 274 (358)
T 4gs5_A 243 FQWIGRADNVINSGGVKIVLDQIDQRIAAVFH 274 (358)
T ss_dssp EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHH
T ss_pred eEEcccccCeEEECCEEECHHHHHHHHHHhcc
Confidence 88999999986555556777889998887764
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=54.52 E-value=5 Score=28.46 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=8.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||+||.-...+..+.-.+++++|.++
T Consensus 417 dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 417 DSSILFLGRKDEQVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp TSCEEEEEEC-----------------------
T ss_pred CCeEEEEccccCEEeECcEEECHHHHHHHHHhc
Confidence 567999999999966555555556677776553
No 29
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=54.16 E-value=13 Score=27.41 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=25.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
+|.|.|.||+||.-...+..+...+++++|.+
T Consensus 516 dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~ 547 (663)
T 1ry2_A 516 DGYIWILGRVDDVVNVSGHRLSTAEIEAAIIE 547 (663)
T ss_dssp TCCEEECSCTTSCBCSSSCCBCHHHHHHHHHS
T ss_pred CCCEEEEeecCCEEEECCEEcCHHHHHHHHHh
Confidence 46699999999997666666778888888864
No 30
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=54.09 E-value=7.4 Score=27.61 Aligned_cols=32 Identities=3% Similarity=0.010 Sum_probs=15.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 429 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 429 EGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp TSCEEEEEEC------------CHHHHHHHTT
T ss_pred CceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 56799999999986555555555667766654
No 31
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=53.83 E-value=11 Score=26.36 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=21.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 419 ~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 419 NGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp TSCEEEEEEGGGCBC----CBCHHHHHHHHTT
T ss_pred CccEEEeCccCCeEEECCEEECHHHHHHHHHh
Confidence 56799999999996655556666677776643
No 32
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=52.98 E-value=5.5 Score=28.33 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=9.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 429 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (544)
T 3o83_A 429 DGNLRVVGRIKDQINRGGEKIASEEIEKLILL 460 (544)
T ss_dssp TSCEEEEEEEC---------------------
T ss_pred CCCEEEEeecCCEEEeCCEEECHHHHHHHHHh
Confidence 56799999999986544444555566666654
No 33
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=50.64 E-value=10 Score=26.40 Aligned_cols=32 Identities=9% Similarity=-0.114 Sum_probs=24.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 388 ~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 388 EGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp TSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred CCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 56799999999986655666667777776654
No 34
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=50.38 E-value=9.2 Score=27.11 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=23.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 420 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 420 DGYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp TSCEEEEEEGGGCEECSSCEECHHHHHHHHTT
T ss_pred CCcEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 56799999999996655555666677777653
No 35
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=50.13 E-value=6 Score=27.81 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=24.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 389 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 389 RGYVHILGRGKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp TCEEEECCSSTTCEEETTEEECHHHHHHHHHT
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 57899999999986555555667788887764
No 36
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=49.75 E-value=7.5 Score=27.19 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=25.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||+||.-...+..+.-.+++++|.+.
T Consensus 389 dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~ 421 (512)
T 3fce_A 389 NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC 421 (512)
T ss_dssp TTEEEEEEEGGGCEEETTEEECHHHHHHHHHHS
T ss_pred CCEEEEecccCCEEEECCEEECHHHHHHHHHhC
Confidence 467999999999866555566777888888764
No 37
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=49.71 E-value=6.3 Score=27.88 Aligned_cols=32 Identities=6% Similarity=0.071 Sum_probs=24.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 424 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 424 DDELFIVDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp TSCEEEEEECSCCEEETTEEECHHHHHHHHHT
T ss_pred CceEEEEecccceEEECCEEECHHHHHHHHHh
Confidence 56799999999986555555667788877764
No 38
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=49.26 E-value=6.3 Score=28.18 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=7.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 459 dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~ 490 (570)
T 4gr5_A 459 DGVLEYVGRADDQVKIRGFRVEPGEVEARLVG 490 (570)
T ss_dssp TSCEEEEEC-----------------------
T ss_pred CCeEEEEcccCCEEEECcEEeCHHHHHHHHhc
Confidence 56799999999986554444555566666654
No 39
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=48.69 E-value=6.5 Score=28.82 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=25.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
+|.|.|.||+||.-...+..+.-.+++++|.+.
T Consensus 507 dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~ 539 (652)
T 1pg4_A 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAH 539 (652)
T ss_dssp TSCEEEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHhC
Confidence 567999999999865555566777888888753
No 40
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=46.98 E-value=6.3 Score=27.99 Aligned_cols=32 Identities=3% Similarity=-0.029 Sum_probs=5.8
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 429 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (550)
T 3rix_A 429 DEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460 (550)
T ss_dssp TCCEEEC-------------------------
T ss_pred CceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence 56799999999986554444445566666554
No 41
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=45.84 E-value=5.9 Score=29.05 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=24.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++.+|.+
T Consensus 409 dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 409 QGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp TSCEEEEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred CCeEEEEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 56799999999986555555666777777765
No 42
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=45.52 E-value=4.2 Score=27.20 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=10.9
Q ss_pred CCCcceeeeeCCC
Q 035382 52 PSVGCSIKWHPQT 64 (66)
Q Consensus 52 ~s~GCsIKw~~~~ 64 (66)
.+.||.|+|+++.
T Consensus 152 ~s~~t~I~Wk~gk 164 (225)
T 2e50_A 152 SSKSTEIKWKSGK 164 (225)
T ss_dssp CEEECCCCBCSSC
T ss_pred ccCCCcceecCCC
Confidence 5789999999874
No 43
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=45.32 E-value=7.4 Score=28.00 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=23.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 446 dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 446 DGYFQFMGRADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp TSCEEEEEEGGGCEEETTEEECHHHHHHHHHT
T ss_pred CceEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 56799999999986555555666777777765
No 44
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=45.08 E-value=8.2 Score=27.01 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=22.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 392 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 392 EGTVRILGRVDDMIISGGENIHPSEIERVLGT 423 (504)
T ss_dssp TSCEEEEEEGGGCEEETTEEECHHHHHHHHTT
T ss_pred CceEEEeCcccCEEEECCEEECHHHHHHHHHh
Confidence 56799999999986545555566677766643
No 45
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=44.40 E-value=9.5 Score=26.77 Aligned_cols=33 Identities=18% Similarity=0.035 Sum_probs=24.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||.||.-...+..+.-.+++++|.+.
T Consensus 451 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 483 (576)
T 3gqw_A 451 DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQE 483 (576)
T ss_dssp TTEEEEEEETTTCEEETTEEECHHHHHHHHTTS
T ss_pred CCEEEEEecCcceEEECCEEECHHHHHHHHHhC
Confidence 567999999999865555556666777776653
No 46
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=43.92 E-value=9.1 Score=26.83 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=25.5
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||+||.-...+..+.-.+++++|.+.
T Consensus 388 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 420 (511)
T 3e7w_A 388 DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420 (511)
T ss_dssp TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred CCeEEEEccccCEEEECCEEeCHHHHHHHHHhC
Confidence 467999999999865555566777888888763
No 47
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=43.52 E-value=9.7 Score=27.48 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=23.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 465 dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 465 DGYLWFVGRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp TSCEEEEEESSSCEEETTEEECHHHHHHHHTT
T ss_pred CCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 56799999999986555555666777777654
No 48
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=43.09 E-value=33 Score=26.10 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=29.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 41 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~all 41 (66)
..+++|.||.++.-....+.++...|++||....
T Consensus 427 ~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~ 460 (609)
T 4b2g_A 427 APQFHFVRRKNVLLSIDSDKTDEAELQKAVDNAS 460 (609)
T ss_dssp EEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHH
T ss_pred CcEEEEEEecCCeEEccccCCCHHHHHHHHHHHH
Confidence 4579999999998777778899999999999766
No 49
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=42.85 E-value=7 Score=28.28 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=23.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++.+|.+
T Consensus 424 dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 424 EGYITVQGREKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp TSCEEEEEECSSEEEETTEEEEHHHHHHHHTT
T ss_pred CceEEEEeecCCEEEECCEEeCHHHHHHHHHh
Confidence 56799999999986555555566677777654
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=42.62 E-value=9 Score=27.02 Aligned_cols=32 Identities=19% Similarity=0.011 Sum_probs=23.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||.||.-...+..+.-.+++++|.+
T Consensus 403 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 403 EGYLYIKDRLKDMIISGGENVYPAEIESVIIG 434 (517)
T ss_dssp TSCEEEEECGGGCEEETTEEECHHHHHHHHTT
T ss_pred CeeEEEecCCcCEEEECCEEECHHHHHHHHHh
Confidence 56799999999996555555666677776643
No 51
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=42.29 E-value=19 Score=20.35 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCcHHHHHHHHHHHHcCC
Q 035382 27 PVTGRDIRLAIECVLSGQ 44 (66)
Q Consensus 27 ~~~~~~L~~Ai~allaG~ 44 (66)
.-++..|..||++|..|+
T Consensus 13 ~Yte~~L~~Ai~aVr~g~ 30 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGK 30 (70)
T ss_dssp CCCHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHHHHHHHcCC
Confidence 358899999999999986
No 52
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=41.50 E-value=4.9 Score=29.47 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=10.4
Q ss_pred CCCcceeeeeC-CC
Q 035382 52 PSVGCSIKWHP-QT 64 (66)
Q Consensus 52 ~s~GCsIKw~~-~~ 64 (66)
.+.||.|+|++ ++
T Consensus 268 ~~egt~I~WK~~Gk 281 (417)
T 2ayu_A 268 HAEGCEISWKDNAH 281 (417)
T ss_dssp EEEECCCCBSCTTT
T ss_pred cccCcceeeecCCC
Confidence 36799999998 53
No 53
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=40.84 E-value=24 Score=21.37 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHHHcCCCC
Q 035382 29 TGRDIRLAIECVLSGQPV 46 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v 46 (66)
+...|+++|+.+|++.++
T Consensus 170 ~~~~l~~~i~~lL~~~~~ 187 (187)
T 3dwv_A 170 SVKDIEEKLIPLLGSARL 187 (187)
T ss_dssp CHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 466899999999987653
No 54
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=40.40 E-value=5.3 Score=28.86 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=10.7
Q ss_pred CCCcceeeeeCCC
Q 035382 52 PSVGCSIKWHPQT 64 (66)
Q Consensus 52 ~s~GCsIKw~~~~ 64 (66)
.+.||.|+|++++
T Consensus 194 ~se~t~I~WK~GK 206 (359)
T 3fs3_A 194 HTEATVIDWYDNK 206 (359)
T ss_dssp EEEECCCCBCTTC
T ss_pred cceeeeeeEeCCC
Confidence 3679999999875
No 55
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=39.82 E-value=40 Score=19.82 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=18.8
Q ss_pred CCcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 7 ~~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
.+|+|+|+..-++.. .. ....++.++|++|
T Consensus 127 ~~G~I~~~~~~~~~~-~~---~~~~eil~~l~~L 156 (157)
T 4g2e_A 127 KEGKVRYKWVSDDPT-KE---PPYDEIEKVVKSL 156 (157)
T ss_dssp TTSBEEEEEEESSTT-CC---CCHHHHHHHHHHT
T ss_pred CCCEEEEEEECCCCC-CC---CCHHHHHHHHHHh
Confidence 367899887654432 11 2356788888876
No 56
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=39.22 E-value=45 Score=18.85 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHcCCC
Q 035382 29 TGRDIRLAIECVLSGQP 45 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~ 45 (66)
+...|++.|+.+|+..+
T Consensus 142 ~~~~l~~~i~~ll~~~~ 158 (160)
T 3lor_A 142 DDFVLGLLLGSLLSETD 158 (160)
T ss_dssp CHHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHhccC
Confidence 45689999999998654
No 57
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=37.25 E-value=14 Score=28.25 Aligned_cols=32 Identities=6% Similarity=0.045 Sum_probs=10.7
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+||.-...+..+.-.+++++|.+
T Consensus 471 dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~ 502 (979)
T 3tsy_A 471 DDELFIVDRLKELIKYKGFQVAPAELEALLIG 502 (979)
T ss_dssp TSCEEEEEESCC--------------------
T ss_pred CceEEEecCCCCEEEECCEEECHHHHHHHHHh
Confidence 56799999999986554444444556666544
No 58
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=37.08 E-value=44 Score=25.28 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=29.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHc
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 42 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~alla 42 (66)
.-++++.||.|+.-.-..+.++...+++||.....
T Consensus 422 ~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~ 456 (581)
T 4epl_A 422 TPQLKFICRRNLILSINIDKNTERDLQLSVESAAK 456 (581)
T ss_dssp EEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHH
T ss_pred CcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHH
Confidence 45789999999987777788999999999987543
No 59
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=35.67 E-value=6 Score=27.01 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=10.8
Q ss_pred CCCCcceeeeeCC
Q 035382 51 KPSVGCSIKWHPQ 63 (66)
Q Consensus 51 t~s~GCsIKw~~~ 63 (66)
..+.||.|+|+++
T Consensus 139 ~~s~~t~I~WK~g 151 (264)
T 2zd7_A 139 LTSEPVPIEWPQS 151 (264)
T ss_dssp EEECCCCCCCCGG
T ss_pred eeEeecccccCCC
Confidence 4678999999874
No 60
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=33.27 E-value=65 Score=18.50 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHcCC
Q 035382 29 TGRDIRLAIECVLSGQ 44 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~ 44 (66)
....|.++|++||+.+
T Consensus 159 ~~~~l~~~l~~ll~~k 174 (174)
T 1xzo_A 159 PYDDIISDVKSASTLK 174 (174)
T ss_dssp CHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 3578999999998754
No 61
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=32.56 E-value=6.8 Score=27.82 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=21.4
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
++.|.|.||+||.-...+..+.-.+++++|.+.
T Consensus 425 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp TCCEEEEEESSCEEEETTEEEEHHHHHCC----
T ss_pred CceEEEeecccceeeeCCEEECHHHHHHHHHhC
Confidence 567999999999865455555666777776553
No 62
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=32.49 E-value=13 Score=26.63 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=23.3
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~a 39 (66)
+|.|.|.||+||.-...+..+.-.+++++|..
T Consensus 420 dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 420 DGNIEYLGRIDNQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp TSCEEEEEEGGGEEEETTEEEEHHHHHHHHTT
T ss_pred CCeEEEeccccCEEEECCEEeCHHHHHHHHHh
Confidence 56699999999986555555666677776654
No 63
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=32.48 E-value=39 Score=22.41 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCCCCCCC-----C-----CCCcceeeeeC
Q 035382 31 RDIRLAIECVLSGQPVSSNQ-----K-----PSVGCSIKWHP 62 (66)
Q Consensus 31 ~~L~~Ai~allaG~~v~~~~-----t-----~s~GCsIKw~~ 62 (66)
.+.++||++-|.+++.+.+. . ...||-|.|+.
T Consensus 12 ~lAR~aI~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~ 53 (207)
T 1zq7_A 12 KLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE 53 (207)
T ss_dssp HHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE
T ss_pred HHHHHHHHHHHccCCCCCccccccCCChhhcCcccEEEEEEE
Confidence 46789999888776655443 2 37799999963
No 64
>2l0c_A Putative membrane protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Salmonella enterica subsp}
Probab=31.86 E-value=26 Score=20.75 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=11.7
Q ss_pred CcCCCCCcEEEEeee
Q 035382 2 QQDGRRPFQLVYHGQ 16 (66)
Q Consensus 2 ~~~~~~~~~L~Y~Gr 16 (66)
-.+|| .|+|.|.|.
T Consensus 63 L~eGD-~G~Lt~QGT 76 (97)
T 2l0c_A 63 LTVGD-QGTLSYKGT 76 (97)
T ss_dssp SCTTC-CEEEEEETT
T ss_pred CCCCC-EEEEEEeee
Confidence 35788 999999996
No 65
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=31.64 E-value=14 Score=29.45 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=25.1
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV 40 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~al 40 (66)
+|.|.|.||+||+-.-.+..+.-.+++.+|.+.
T Consensus 851 dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~ 883 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEY 883 (1304)
T ss_dssp TSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHS
T ss_pred CCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhC
Confidence 567999999999865555556667888888763
No 66
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=31.32 E-value=19 Score=25.04 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=8.7
Q ss_pred CcEEEEeeec--cCCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQF--DDSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrI--DD~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||+ ||.-...+..+.-.+++++|.+
T Consensus 388 dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~ 421 (509)
T 3ivr_A 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQ 421 (509)
T ss_dssp TSCEEEEEEC------------------------
T ss_pred CceEEEeCCCCcceeEEECCEEECHHHHHHHHHh
Confidence 5669999999 5544333333444455555544
No 67
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.26 E-value=17 Score=19.65 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcc
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGC 56 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GC 56 (66)
+...+..|++-|+.+......+.|+.|-
T Consensus 33 ~~~nve~A~e~L~~~~~~~~~~~p~~~~ 60 (63)
T 1wji_A 33 NGNNLEAALNVLLTSNKQKPVMGPPSGP 60 (63)
T ss_dssp TTSCHHHHHHHHHHHSSCCCCCSSCCCS
T ss_pred hCCCHHHHHHHHHHCCCCcccCCCCCCC
Confidence 3446889999999887777777776653
No 68
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=30.64 E-value=33 Score=25.92 Aligned_cols=34 Identities=9% Similarity=-0.037 Sum_probs=28.2
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 41 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~all 41 (66)
..++++.||.++.-....+.++...+++||.+..
T Consensus 415 ~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 415 APQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp EEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred CcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence 4579999999988776778889999999999654
No 69
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=30.26 E-value=13 Score=24.69 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
...++-.+|++|..-. .....|+.+|+++.
T Consensus 172 ~~~EvLr~l~aLQ~~~------~~~~~~Pa~W~~G~ 201 (219)
T 3tue_A 172 SVEEVLRLLEAFQFVE------KHGEVCPANWKKGD 201 (219)
T ss_dssp CHHHHHHHHHHHHHHH------HC------------
T ss_pred CHHHHHHHHHHhhhHH------hcCCCcCCCCCCCC
Confidence 3456777888775321 23568999998764
No 70
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=29.75 E-value=79 Score=19.77 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=26.4
Q ss_pred CCcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 035382 7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS 47 (66)
Q Consensus 7 ~~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~ 47 (66)
..+.+.|-|.+- .+.+....-|.+||+.|+......
T Consensus 16 ~~f~~kyLGsv~-----V~~~~G~dVln~Ai~~l~~~~~~~ 51 (144)
T 2dyq_A 16 QKYEALYMGTLP-----VTKAMGMDVLNEAIGTLTARGDRN 51 (144)
T ss_dssp CCCEEEEEEEEE-----ESSSCCHHHHHHHHHHHHCCCSSC
T ss_pred hEEEEEEeccEE-----ecCccCHHHHHHHHHHHHhcCCcc
Confidence 368899999972 223456777999999999865543
No 71
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=28.98 E-value=84 Score=20.55 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382 29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64 (66)
Q Consensus 29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~ 64 (66)
...++-.+|++|.--. .....|..+|+++.
T Consensus 168 n~dEiLr~l~AlQ~~~------~~~~~~Pa~W~~G~ 197 (216)
T 3sbc_A 168 NVDEALRLVEAFQWTD------KNGTVLPCNWTPGA 197 (216)
T ss_dssp CHHHHHHHHHHHHHHH------HHCCBBCTTCCTTS
T ss_pred CHHHHHHHHHHhhhHh------hcCCCcCCCCCCCC
Confidence 4556777888876221 11247888888764
No 72
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=28.61 E-value=49 Score=17.79 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=17.3
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCCC
Q 035382 26 LPVTGRDIRLAIECVLSGQPVSSNQK 51 (66)
Q Consensus 26 ~~~~~~~L~~Ai~allaG~~v~~~~t 51 (66)
.+.+...|..+|+.++.+.......+
T Consensus 106 kP~~~~~l~~~i~~~~~~~~~~~~~~ 131 (132)
T 2rdm_A 106 KPFTSAQLITAVSQLLNAREGHHHHH 131 (132)
T ss_dssp SSCCHHHHHHHHHHHHHTTC------
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCC
Confidence 35678899999999999988776554
No 73
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=28.01 E-value=25 Score=24.71 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=21.3
Q ss_pred CcEEEEeeecc-CCCCCCCCCCcHHHHHHHHHH
Q 035382 8 PFQLVYHGQFD-DSRPSNNLPVTGRDIRLAIEC 39 (66)
Q Consensus 8 ~~~L~Y~GrID-D~~~~~~~~~~~~~L~~Ai~a 39 (66)
++.|.|.||.| |.-...+..+.-.+++++|.+
T Consensus 395 dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALLE 427 (505)
T ss_dssp TSCEEEEEESSCCCEEETTEEECHHHHHHHHTT
T ss_pred CccEEEeCCccCceEEeCCEEECHHHHHHHHHH
Confidence 56799999985 653334445566677777654
No 74
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=27.81 E-value=33 Score=18.93 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=14.9
Q ss_pred CCcHHHHHHHHHHHHcCCCCCCCCCCC
Q 035382 27 PVTGRDIRLAIECVLSGQPVSSNQKPS 53 (66)
Q Consensus 27 ~~~~~~L~~Ai~allaG~~v~~~~t~s 53 (66)
+.+...|..+|+.++.+.....+..++
T Consensus 111 P~~~~~l~~~i~~~~~~~~~~~~~~~~ 137 (140)
T 3lua_A 111 PYPTKRLENSVRSVLKICQRFREGHHH 137 (140)
T ss_dssp SCCTTHHHHHHHHHHCC----------
T ss_pred CCCHHHHHHHHHHHHHhccccCCCCCC
Confidence 456789999999999998877665543
No 75
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=27.07 E-value=18 Score=23.50 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=9.4
Q ss_pred CCcceeeeeCCC
Q 035382 53 SVGCSIKWHPQT 64 (66)
Q Consensus 53 s~GCsIKw~~~~ 64 (66)
+-||.|+|++++
T Consensus 124 ~~~t~I~Wk~gk 135 (193)
T 3kyp_A 124 VECTRIKWKEGK 135 (193)
T ss_dssp CCCCCCCCCSSC
T ss_pred eccceeeeecCC
Confidence 457899998764
No 76
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A
Probab=26.83 E-value=73 Score=19.67 Aligned_cols=33 Identities=36% Similarity=0.411 Sum_probs=24.0
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP 45 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~ 45 (66)
.+.+.|-|.+- .+.+....-|.+||+.|.....
T Consensus 9 ~F~vkYLGsv~-----V~~p~G~~Vl~~Ai~ki~~~~~ 41 (140)
T 3dxe_A 9 KFQVYYLGNVP-----VAKPVGVDVINGALESVLSSSS 41 (140)
T ss_dssp -CEEEEEEEEE-----ESCSCCHHHHHHHHHHHHHTCC
T ss_pred eEeeeecceEE-----ECCCCcHHHHHHHHHHHHhcCC
Confidence 68899999962 2234467779999999997654
No 77
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=26.66 E-value=64 Score=17.99 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHc-----CCCCCCCCCC
Q 035382 29 TGRDIRLAIECVLS-----GQPVSSNQKP 52 (66)
Q Consensus 29 ~~~~L~~Ai~alla-----G~~v~~~~t~ 52 (66)
....+++||+..+. |+++|.+...
T Consensus 49 A~~~a~eAl~~~le~~~e~g~~iP~p~~~ 77 (87)
T 2dsy_A 49 CEANLQAALEDWLLFLLSRGETPPPLGEV 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCBTTB
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCc
Confidence 34567777777665 8888887653
No 78
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=26.53 E-value=1.1e+02 Score=20.03 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=22.1
Q ss_pred CCcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHc
Q 035382 7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 42 (66)
Q Consensus 7 ~~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~alla 42 (66)
.+|+|+|++..++... . ..-..+.+||++|..
T Consensus 145 ~dG~I~~~~~~~~~~~-~---pd~~evl~~L~~l~~ 176 (224)
T 3keb_A 145 AANVVHYSERLANTRD-F---FDFDAIEKLLQEGEQ 176 (224)
T ss_dssp TTCBEEEEEECSBTTC-C---CCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEecCCCCC-C---CCHHHHHHHHHHhhh
Confidence 3788999999876531 1 245577788887764
No 79
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B
Probab=26.29 E-value=97 Score=18.93 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=25.4
Q ss_pred CCCCCcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 035382 4 DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 44 (66)
Q Consensus 4 ~~~~~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~ 44 (66)
++-..+.+.|.|.+-= ..+....-|.+||+.|+...
T Consensus 13 e~~~~f~vkyLGsv~V-----~~p~G~dV~~~Ai~~i~~~~ 48 (136)
T 1wgu_A 13 ELVQKFRVQYLGMLPV-----DRPVGMDTLNSAIENLMTSS 48 (136)
T ss_dssp CCCCCEEEEEEEEEEC-----SCSSCSHHHHHHHHHHHHSS
T ss_pred CCceEEEEEecCcEEc-----CCCCcHHHHHHHHHHHHhcc
Confidence 3444789999999732 22345556999999999843
No 80
>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1
Probab=26.16 E-value=60 Score=21.50 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCCCC--CCC-----CCCCcceeeee
Q 035382 31 RDIRLAIECVLSGQPVS--SNQ-----KPSVGCSIKWH 61 (66)
Q Consensus 31 ~~L~~Ai~allaG~~v~--~~~-----t~s~GCsIKw~ 61 (66)
.+.++||++-|.+++.+ .+. ....||-|.|+
T Consensus 15 ~lAR~aI~~~L~~~~~~~~p~~~~~~l~~~~g~FVTl~ 52 (214)
T 1vaj_A 15 RLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLN 52 (214)
T ss_dssp HHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEE
T ss_pred HHHHHHHHHHHccCCCCCCCcccChhhcCcccEEEEEE
Confidence 46789999888766653 222 23789999997
No 81
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=24.75 E-value=68 Score=17.60 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=11.0
Q ss_pred cHHHHHHHHHHHHcC
Q 035382 29 TGRDIRLAIECVLSG 43 (66)
Q Consensus 29 ~~~~L~~Ai~allaG 43 (66)
+...|++.|+.+|+.
T Consensus 133 ~~~~l~~~l~~ll~~ 147 (148)
T 3fkf_A 133 QGEALTGKLKELLKT 147 (148)
T ss_dssp CHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHcc
Confidence 567899999998864
No 82
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=24.40 E-value=62 Score=17.86 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCcceeeeeC
Q 035382 32 DIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 62 (66)
Q Consensus 32 ~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~ 62 (66)
.++.|+.+|+.|+.+..-+.. |=++.|..
T Consensus 9 ~a~~A~~~L~tG~~~vsV~yd--gr~V~Y~~ 37 (68)
T 1hyw_A 9 AARAALHDLMTGKRVATVQKD--GRRVEFTA 37 (68)
T ss_dssp HHHHHHHHHTTSCCCEEEECS--SCEEEECT
T ss_pred HHHHHHHHHhcCCceEEEEEC--CEEEEEec
Confidence 477888888888887665553 66666653
No 83
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A
Probab=24.25 E-value=1.1e+02 Score=19.71 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=25.2
Q ss_pred CCCCcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 035382 5 GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ 44 (66)
Q Consensus 5 ~~~~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~ 44 (66)
+-..+.+.|-|.+- ...+....-|.+||+.|+...
T Consensus 60 ~~~~F~vkYLGsv~-----V~~p~G~dVl~~AI~kl~~~~ 94 (176)
T 2yt0_A 60 LVQKFRVQYLGMLP-----VDRPVGMDTLNSAIENLMTSS 94 (176)
T ss_dssp CCCEEEEEEEEEEE-----CSCSSCHHHHHHHHHHHHHHS
T ss_pred cceEEEEEccCceE-----ccCCccHHHHHHHHHHHHhcc
Confidence 34478999999972 223446667999999998743
No 84
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=23.92 E-value=57 Score=18.01 Aligned_cols=27 Identities=11% Similarity=0.368 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCCCCCC
Q 035382 26 LPVTGRDIRLAIECVLSGQPVSSNQKP 52 (66)
Q Consensus 26 ~~~~~~~L~~Ai~allaG~~v~~~~t~ 52 (66)
.+.+...|..+|..++.+.....+.++
T Consensus 107 KP~~~~~L~~~i~~~l~~~~~~~~~~~ 133 (136)
T 3t6k_A 107 KPFEPQELVYRVKNILARTTIETPTTP 133 (136)
T ss_dssp TTCCHHHHHHHHHHHHHC---------
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 356788999999999998877666554
No 85
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=23.26 E-value=78 Score=17.90 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCCC
Q 035382 31 RDIRLAIECVLSGQPV 46 (66)
Q Consensus 31 ~~L~~Ai~allaG~~v 46 (66)
-.+++||+++++|+-.
T Consensus 92 ~~i~eal~~~~~g~L~ 107 (116)
T 1rdu_A 92 GTVQEAIDAFSEGRLE 107 (116)
T ss_dssp CBHHHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHhCCCC
Confidence 3689999999999843
No 86
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=22.86 E-value=35 Score=25.15 Aligned_cols=27 Identities=7% Similarity=0.144 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHc--CCCCCCCCCCCCcce
Q 035382 31 RDIRLAIECVLS--GQPVSSNQKPSVGCS 57 (66)
Q Consensus 31 ~~L~~Ai~alla--G~~v~~~~t~s~GCs 57 (66)
..+.++|+.|.. .+.+-+.-.+|+||.
T Consensus 175 ~~~~~~v~~L~~~Gar~~~v~~~pp~gc~ 203 (632)
T 3kvn_X 175 GRLVDSVQALQQAGARYIVVWLLPDLGLT 203 (632)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCCGGGS
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Confidence 345667777765 567889999999995
No 87
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=22.84 E-value=39 Score=24.67 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=21.7
Q ss_pred HHHHHHcCCCCCCCCCCCCcceeeeeC
Q 035382 36 AIECVLSGQPVSSNQKPSVGCSIKWHP 62 (66)
Q Consensus 36 Ai~allaG~~v~~~~t~s~GCsIKw~~ 62 (66)
-.+--+..+..+-..|-|.||.|+-.+
T Consensus 239 Gf~~W~~~~g~~L~~tAPFGC~I~~nP 265 (390)
T 1i9w_A 239 GFKYWLKEKGTALNTKAPFGCQIKTNP 265 (390)
T ss_pred HHHHHHhcCCCccccCCCcceEEecCc
Confidence 456667888888899999999998643
No 88
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=22.81 E-value=12 Score=26.40 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=20.6
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHH
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAI 37 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai 37 (66)
++.|.|.||+||.-...+..+.-.+++++|
T Consensus 448 dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l 477 (590)
T 3kxw_A 448 ENELYVTGRIKDLIIIYGKNHYPQDIEFSL 477 (590)
T ss_dssp TTEEEEEEESSCHHHHHHHTTHHHHHHHHH
T ss_pred CCEEEEEcCccceEEECCEecCHHHHHHHH
Confidence 467999999999853333345556677776
No 89
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=22.53 E-value=40 Score=25.01 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=21.6
Q ss_pred HHHHHHcCCCCCCCCCCCCcceeeeeC
Q 035382 36 AIECVLSGQPVSSNQKPSVGCSIKWHP 62 (66)
Q Consensus 36 Ai~allaG~~v~~~~t~s~GCsIKw~~ 62 (66)
-.+--+..+..+-..|-|.||.|+-.+
T Consensus 239 Gf~~W~k~~g~~L~~tAPFGC~I~~nP 265 (439)
T 3j0f_E 239 GFEMWKNNSGRPLQETAPFGCKIAVNP 265 (439)
T ss_pred HHHHHHhcCCCccccCCCcccEEecCc
Confidence 456667788888899999999998643
No 90
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=22.41 E-value=40 Score=22.48 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCCCCC
Q 035382 32 DIRLAIECVLSGQPVSSN 49 (66)
Q Consensus 32 ~L~~Ai~allaG~~v~~~ 49 (66)
-+++||++|.+|+.|-+-
T Consensus 7 ~ie~Ai~~lr~G~~Viv~ 24 (204)
T 1tks_A 7 PIEEALEAYKNGEFLIVM 24 (204)
T ss_dssp CHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHCCCeEEEE
Confidence 378999999999998653
No 91
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=22.11 E-value=41 Score=22.80 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCCCCC
Q 035382 32 DIRLAIECVLSGQPVSS 48 (66)
Q Consensus 32 ~L~~Ai~allaG~~v~~ 48 (66)
-+++||++|.+|+.|-+
T Consensus 3 ~ie~Ai~alr~G~~Viv 19 (227)
T 1snn_A 3 NVEKAIEALKKGEIILV 19 (227)
T ss_dssp HHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHCCCeEEE
Confidence 47899999999999855
No 92
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=22.08 E-value=1.5e+02 Score=19.81 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=21.8
Q ss_pred cEEEEeee-ccCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 035382 9 FQLVYHGQ-FDDSRPSNNLPVTGRDIRLAIECVLSGQPV 46 (66)
Q Consensus 9 ~~L~Y~Gr-IDD~~~~~~~~~~~~~L~~Ai~allaG~~v 46 (66)
+.|.|.|. +-..-.+.....-+..|++||..++ |+++
T Consensus 8 l~i~YdGt~y~GwQ~Q~~~~TVq~~Le~AL~~~~-~~~v 45 (264)
T 1dj0_A 8 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPI 45 (264)
T ss_dssp EEEEECCTTSSCSCCTTCSSCHHHHHHHHHHHHH-TSCC
T ss_pred EEEEEeCCCceeEEECcCCCCHHHHHHHHHHHHh-CCCe
Confidence 57888886 3222222222333557999999987 5543
No 93
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=21.21 E-value=1e+02 Score=19.10 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=26.9
Q ss_pred CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 035382 8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN 49 (66)
Q Consensus 8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~ 49 (66)
...+.|-|.+|=-. .....=++.||..+|+.++++.+
T Consensus 3 acnV~yLgSveves-----ltG~~av~~Ai~~~l~~~~~~~~ 39 (134)
T 1wvh_A 3 ACNVLFINSVEMES-----LTGPQAISKAVAETLVADPTPTA 39 (134)
T ss_dssp EEEEEEEEEEEEET-----CCHHHHHHHHHHHHHTCSSCCCC
T ss_pred ceEEEEEEEEEecC-----CcCHHHHHHHHHHHHhcCCCCCC
Confidence 35689999987553 22345689999999998876544
No 94
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=21.01 E-value=44 Score=22.26 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCCCCC
Q 035382 32 DIRLAIECVLSGQPVSSN 49 (66)
Q Consensus 32 ~L~~Ai~allaG~~v~~~ 49 (66)
-+++||++|.+|++|-+-
T Consensus 6 ~ie~Ai~~lr~G~~Viv~ 23 (206)
T 3mio_A 6 SVERAVADIAAGKAVIVI 23 (206)
T ss_dssp CHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHCCCeEEEE
Confidence 378999999999998653
No 95
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=20.58 E-value=46 Score=22.32 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCCCCCC
Q 035382 30 GRDIRLAIECVLSGQPVSSN 49 (66)
Q Consensus 30 ~~~L~~Ai~allaG~~v~~~ 49 (66)
.+-+++||++|.+|++|-+-
T Consensus 13 ~~~ie~Ai~~lr~G~~Viv~ 32 (217)
T 1g57_A 13 FERVENALAALREGRGVMVL 32 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEE
Confidence 46699999999999998653
No 96
>1bh4_A Circulin A; cyclic peptide, cystine knot, anti-HIV activity; NMR {Chassalia parviflora} SCOP: g.3.3.3 PDB: 2eri_A 2kcg_A 2knm_A 2knn_A* 2kux_A 1vb8_A 1nbj_A
Probab=20.54 E-value=5.5 Score=19.28 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=8.6
Q ss_pred CCCCcceeeee
Q 035382 51 KPSVGCSIKWH 61 (66)
Q Consensus 51 t~s~GCsIKw~ 61 (66)
|..+|||=||+
T Consensus 12 t~~~GCsC~~~ 22 (30)
T 1bh4_A 12 SAALGCSCKNK 22 (30)
T ss_dssp HHHHSSCCCSS
T ss_pred CCCCCcccCCC
Confidence 45589999986
No 97
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=20.45 E-value=60 Score=17.12 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=13.4
Q ss_pred CCcHHHHHHHHHHHHcCC
Q 035382 27 PVTGRDIRLAIECVLSGQ 44 (66)
Q Consensus 27 ~~~~~~L~~Ai~allaG~ 44 (66)
.++..++..||+.++..+
T Consensus 60 ~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 60 HVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp EECHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 578889999999888754
No 98
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=20.21 E-value=55 Score=19.57 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCCCCCC
Q 035382 32 DIRLAIECVLSGQPVSSN 49 (66)
Q Consensus 32 ~L~~Ai~allaG~~v~~~ 49 (66)
.+++||+++++|+-.+.+
T Consensus 107 ~i~eal~~~~~G~L~~~~ 124 (136)
T 1o13_A 107 TVEEVVNQYLSGQLKDSD 124 (136)
T ss_dssp BHHHHHHHHHTTC-----
T ss_pred CHHHHHHHHHhCCCCCCC
Confidence 689999999999955443
Done!