Query 035386
Match_columns 66
No_of_seqs 108 out of 494
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 03:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cww_A Insulysin, insulin-degr 98.1 2.4E-06 8.3E-11 60.3 4.5 64 2-65 384-447 (990)
2 1q2l_A Protease III; hydrolase 98.1 2.4E-06 8.2E-11 60.0 3.8 65 2-66 368-432 (939)
3 1hu3_A EIF4GII; heat repeat, t 47.0 6.9 0.00024 24.0 1.1 15 51-65 13-27 (260)
4 4h62_V Mediator of RNA polymer 45.0 14 0.00048 15.4 1.5 15 44-58 5-19 (31)
5 2vso_E Eukaryotic initiation f 41.1 11 0.00038 23.4 1.4 15 51-65 38-52 (284)
6 1ik9_C DNA ligase IV; DNA END 40.2 26 0.00089 15.3 2.6 23 40-62 14-36 (37)
7 2js9_A Saposin-like protein fa 32.3 31 0.0011 18.2 2.1 24 41-64 67-90 (99)
8 3ic4_A Glutaredoxin (GRX-1); s 27.0 25 0.00085 17.2 1.1 18 41-58 74-91 (92)
9 2fcg_F Cationic, antibacterial 24.5 48 0.0016 13.5 1.6 13 51-63 10-22 (26)
10 3ami_A Zinc peptidase; alpha/b 23.1 14 0.00049 23.4 -0.4 49 17-65 364-414 (445)
11 2fi2_A Zinc finger protein 42; 22.0 66 0.0023 17.2 2.2 20 10-29 15-34 (94)
12 1y7q_A AW-1, zinc finger prote 22.0 62 0.0021 17.4 2.0 20 10-29 17-36 (98)
13 1rw1_A Conserved hypothetical 21.3 41 0.0014 17.7 1.3 20 38-57 94-113 (114)
No 1
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=98.13 E-value=2.4e-06 Score=60.32 Aligned_cols=64 Identities=33% Similarity=0.633 Sum_probs=58.5
Q ss_pred hHhhHHhhcccCCCCCChhHHHHHHHHhCCCCCCcCeeeCCCCCCCCCHHHHHHHHhccCCCCC
Q 035386 2 KLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTV 65 (66)
Q Consensus 2 E~~~~~~~~F~f~ek~~p~~~~~~la~~m~~~p~ed~L~~~~l~~~~d~~~i~~~l~~Ltp~N~ 65 (66)
|.+.+....|+|++...|.+++..++.+|+.+++++++.+...+..++++.|++++++|.|+|+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~ 447 (990)
T 3cww_A 384 ELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENV 447 (990)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGC
T ss_pred HHHHHHHHhcccCCcCCHHHHHHHHHHHHhhCCHHHHhccchhhhcCCHHHHHHHHHhcCHhHE
Confidence 4566778889998888999999999999999999999999999999999999999999999886
No 2
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=98.09 E-value=2.4e-06 Score=59.98 Aligned_cols=65 Identities=22% Similarity=0.427 Sum_probs=58.6
Q ss_pred hHhhHHhhcccCCCCCChhHHHHHHHHhCCCCCCcCeeeCCCCCCCCCHHHHHHHHhccCCCCCC
Q 035386 2 KLSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMTLKELSPKTVR 66 (66)
Q Consensus 2 E~~~~~~~~F~f~ek~~p~~~~~~la~~m~~~p~ed~L~~~~l~~~~d~~~i~~~l~~Ltp~N~r 66 (66)
+.+.....+|+|..+..+.+++..++.+|..+|+++++.+...+..++++.|++++++|+|+|++
T Consensus 368 ~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~ 432 (939)
T 1q2l_A 368 ELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNAR 432 (939)
T ss_dssp HHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHHHHHCSGGGCE
T ss_pred HHHHHHHhcccccCCCChHHHHHHHHHHhhcCCHHHHhcCchhhhccCHHHHHHHHHhcCHHHcE
Confidence 45666778899999889999999999999989999999999999999999999999999998863
No 3
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=47.03 E-value=6.9 Score=24.03 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=12.9
Q ss_pred HHHHHHHhccCCCCC
Q 035386 51 EIIQMTLKELSPKTV 65 (66)
Q Consensus 51 ~~i~~~l~~Ltp~N~ 65 (66)
..|+.+|+.|||+|+
T Consensus 13 r~v~giLNKLT~~nf 27 (260)
T 1hu3_A 13 RKVRSILNKLTPQMF 27 (260)
T ss_dssp HHHHHHHTCSSCCCH
T ss_pred HHHHHHHhhCCHHHH
Confidence 468899999999985
No 4
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=45.04 E-value=14 Score=15.41 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=8.8
Q ss_pred CCCCCCHHHHHHHHh
Q 035386 44 LPSNFNPEIIQMTLK 58 (66)
Q Consensus 44 l~~~~d~~~i~~~l~ 58 (66)
-...||...|.++|.
T Consensus 5 gvtrfdekqieelld 19 (31)
T 4h62_V 5 GVTRFDEKQIEELLD 19 (31)
T ss_dssp -----CHHHHHHHHH
T ss_pred ccccccHHHHHHHHH
Confidence 356799999999885
No 5
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=41.12 E-value=11 Score=23.39 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=12.9
Q ss_pred HHHHHHHhccCCCCC
Q 035386 51 EIIQMTLKELSPKTV 65 (66)
Q Consensus 51 ~~i~~~l~~Ltp~N~ 65 (66)
..|+.+|+.|||+|+
T Consensus 38 r~vkgiLNKLT~~nf 52 (284)
T 2vso_E 38 RKMKSLLNKLTLEMF 52 (284)
T ss_dssp HHHHHHHHSCCSTTH
T ss_pred HHHHHHHhhCCHHHH
Confidence 458899999999985
No 6
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=40.16 E-value=26 Score=15.33 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.3
Q ss_pred eCCCCCCCCCHHHHHHHHhccCC
Q 035386 40 VGESLPSNFNPEIIQMTLKELSP 62 (66)
Q Consensus 40 ~~~~l~~~~d~~~i~~~l~~Ltp 62 (66)
.|+.....-+++.++.+|+.+.+
T Consensus 14 yGDSY~rd~t~~eLk~il~~m~~ 36 (37)
T 1ik9_C 14 YGDSYFIDTDLNQLKEVFSGIKN 36 (37)
T ss_dssp TSCBSSSCCCHHHHHHHHHTCC-
T ss_pred ccccccCcCCHHHHHHHHHHccc
Confidence 37777778899999999998853
No 7
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=32.32 E-value=31 Score=18.25 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=21.1
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCC
Q 035386 41 GESLPSNFNPEIIQMTLKELSPKT 64 (66)
Q Consensus 41 ~~~l~~~~d~~~i~~~l~~Ltp~N 64 (66)
-..++..|=|..|+.+.+..+|+.
T Consensus 67 C~~~V~~y~~~II~~L~~~~~P~~ 90 (99)
T 2js9_A 67 CDHYVNSKVDPIIHELEGGTAPKD 90 (99)
T ss_dssp HHTTTTTTHHHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHH
Confidence 367889999999999999999974
No 8
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=27.03 E-value=25 Score=17.19 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=15.0
Q ss_pred CCCCCCCCCHHHHHHHHh
Q 035386 41 GESLPSNFNPEIIQMTLK 58 (66)
Q Consensus 41 ~~~l~~~~d~~~i~~~l~ 58 (66)
++..+..||++.|+++|+
T Consensus 74 ~g~~i~G~~~~~l~~~l~ 91 (92)
T 3ic4_A 74 GDKHVLGYNEEKLKELIR 91 (92)
T ss_dssp TTEEEESCCHHHHHHHHH
T ss_pred CCEEEeCCCHHHHHHHhc
Confidence 666777899999999886
No 9
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=24.52 E-value=48 Score=13.53 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=10.1
Q ss_pred HHHHHHHhccCCC
Q 035386 51 EIIQMTLKELSPK 63 (66)
Q Consensus 51 ~~i~~~l~~Ltp~ 63 (66)
+.|+.+++.|.|.
T Consensus 10 QkIkdFf~~l~pr 22 (26)
T 2fcg_F 10 QRIKDFLRNLVPR 22 (26)
T ss_dssp HHHHHHHHHSCCS
T ss_pred HHHHHHHHhcCcc
Confidence 5688888888875
No 10
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=23.12 E-value=14 Score=23.44 Aligned_cols=49 Identities=6% Similarity=-0.136 Sum_probs=35.9
Q ss_pred CChhHHHHHHHHhCCC-CCCcCeeeCCCCCCCCCHHHHHHHHh-ccCCCCC
Q 035386 17 VPPIDYVVTVAANMET-YPPQDWLVGESLPSNFNPEIIQMTLK-ELSPKTV 65 (66)
Q Consensus 17 ~~p~~~~~~la~~m~~-~p~ed~L~~~~l~~~~d~~~i~~~l~-~Ltp~N~ 65 (66)
..+...+..++..+.. .++..+......+...+++.|+++++ +|+|+|+
T Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~ 414 (445)
T 3ami_A 364 DSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTL 414 (445)
T ss_dssp TSHHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSCSTTE
T ss_pred hCHHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHHHHHHHcCcCCe
Confidence 4566778888877654 46665655666778889999999986 6788764
No 11
>2fi2_A Zinc finger protein 42; SCAN domain, ZNF-42, MZF-1, homodimer, transcription factor, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=21.98 E-value=66 Score=17.16 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=16.4
Q ss_pred cccCCCCCChhHHHHHHHHh
Q 035386 10 TFHYQDKVPPIDYVVTVAAN 29 (66)
Q Consensus 10 ~F~f~ek~~p~~~~~~la~~ 29 (66)
.|+|++...|.+-.+.|-..
T Consensus 15 ~f~y~e~~gPreaL~rLreL 34 (94)
T 2fi2_A 15 CFHYEEATGPQEALAQLREL 34 (94)
T ss_dssp SCCCCTTTCHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHH
Confidence 58899999999888777654
No 12
>1y7q_A AW-1, zinc finger protein 174; SCAN domain, retroviral capsid C-terminal domain, dimer, C2H2 zinc finger associated, transcription; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=21.97 E-value=62 Score=17.41 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.4
Q ss_pred cccCCCCCChhHHHHHHHHh
Q 035386 10 TFHYQDKVPPIDYVVTVAAN 29 (66)
Q Consensus 10 ~F~f~ek~~p~~~~~~la~~ 29 (66)
.|+|++...|.+-.+.|-..
T Consensus 17 ~f~y~e~~gPreaL~rLreL 36 (98)
T 1y7q_A 17 RFCYQEVSGPQEALSQLRQL 36 (98)
T ss_dssp TCCSCSCCSSHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHH
Confidence 58899999999888777654
No 13
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=21.28 E-value=41 Score=17.68 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.0
Q ss_pred eeeCCCCCCCCCHHHHHHHH
Q 035386 38 WLVGESLPSNFNPEIIQMTL 57 (66)
Q Consensus 38 ~L~~~~l~~~~d~~~i~~~l 57 (66)
+..|+.+.-.|+++.+.+++
T Consensus 94 v~~~~~~~vGf~~~~~~~~l 113 (114)
T 1rw1_A 94 LELGGRTLVGFKPDAYAAAL 113 (114)
T ss_dssp EECSSCEEESCCHHHHHHHH
T ss_pred EEECCEEEEeCCHHHHHHHh
Confidence 34577777899999999887
Done!