BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035388
(66 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/36 (83%), Positives = 33/36 (91%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 39
FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG
Sbjct: 140 FADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/36 (83%), Positives = 33/36 (91%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 39
FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG
Sbjct: 140 FADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTA 44
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG TA
Sbjct: 147 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 187
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 34/38 (89%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 39
+ FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG
Sbjct: 154 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 33/36 (91%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 39
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG
Sbjct: 139 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+M
Sbjct: 130 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+M
Sbjct: 137 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+M
Sbjct: 137 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+ FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+M
Sbjct: 145 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG----NQPTANKS-SGTVQMKGQ 56
+ FAD +PFLETSA D+ NVE AFLTMA +IK+ M N+ T K G V +KGQ
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQ 196
Query: 57 PIQQNSNCC 65
+ CC
Sbjct: 197 SLTNTGGCC 205
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 58.9 bits (141), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 39
+ FAD LGIPFLETSAK+A NVEQ+F T A EIKK+ G
Sbjct: 162 KEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKRXG 199
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG----NQPTANKS-SGTVQMKGQ 56
+ FAD +PFLETSA D+ NVE AFLTMA +IK+ M N+ T K G V +KGQ
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQ 196
Query: 57 PIQQNSNCC 65
+ C
Sbjct: 197 SLTNTGGGC 205
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 30/37 (81%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+ AD GI F+ETSAK+A NVEQAF TMAGEIKK++
Sbjct: 138 RELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
+ FAD +PFLETSA D+ NVE AFLTMA +IK+
Sbjct: 150 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+AFA E G+ F+ETSAK A NVE+AF+ A EI +K+
Sbjct: 150 EAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTA 44
+ A + GI F+ETSAK INVE AF T+A +IK KM A
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKA 179
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+ A + GI F+ETSAK INVE AF T+A +IK KM
Sbjct: 135 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
+AFA E G+ F+ETSAK A NVE+AF+ A EI +K
Sbjct: 139 EAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQP 42
+ A E G+PF+ETSAK +NV+ AF +A E+K++ P
Sbjct: 140 EKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+A A ELGIPF+E+SAK+ NV + F T+A I++K+
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+A A ELGIPF+E+SAK+ NV + F T+A I++K+
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+A A ELGIPF+E+SAK+ NV + F T+A I++K+
Sbjct: 135 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+A A ELGIPF+E+SAK+ NV + F T+A I++K+
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSG 49
+A A ELGIPF+E+SAK+ NV + F T+A I++K+ + +G
Sbjct: 148 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNG 195
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
+AFA++ G+ F+ETSA D+ NVE AF T+ EI +
Sbjct: 149 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
+AFA++ G+ F+ETSA D+ NVE AF T+ EI +
Sbjct: 137 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIPF+ETSAK V+ AF T+ EI+K
Sbjct: 149 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIPF+ETSAK V+ AF T+ EI+K
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIPF+ETSAK V+ AF T+ EI+K
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIPF+ETSAK V+ AF T+ EI+K
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 10 IPFLETSAKDAINVEQAFLTMA 31
IP+ ETSAK+AINVEQAF T+A
Sbjct: 149 IPYFETSAKEAINVEQAFQTIA 170
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIPF+ETSAK V+ AF T+ EI+K
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 10 IPFLETSAKDAINVEQAFLTMA 31
IP+ ETSAK+AINVEQAF T+A
Sbjct: 149 IPYFETSAKEAINVEQAFQTIA 170
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 10 IPFLETSAKDAINVEQAFLTMA 31
IP+ ETSAK+AINVEQAF T+A
Sbjct: 149 IPYFETSAKEAINVEQAFQTIA 170
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 10 IPFLETSAKDAINVEQAFLTMA 31
IP+ ETSAK+AINVEQAF T+A
Sbjct: 149 IPYFETSAKEAINVEQAFQTIA 170
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34
+AFA++ G+ F+ETSA D+ NVE AF T+ EI
Sbjct: 158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS 48
+AFA++ + F+ETSA D+ NVE+AF + EI + + + A++++
Sbjct: 134 RAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 180
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34
+AFA++ G+ F+ETSA D+ NVE AF T+ EI
Sbjct: 134 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34
+AFA++ G+ F+ETSA D+ NVE AF T+ EI
Sbjct: 140 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34
+AFA++ G+ F+ETSA D+ NVE AF T+ EI
Sbjct: 158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 41
+ FA+ G+ FLETSA D+ NVE AF T+ EI K+ Q
Sbjct: 139 RMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQ 41
+ FA+ G+ FLETSA D+ NVE AF T+ EI K+ Q
Sbjct: 154 RMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 138 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 172
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 137 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 136 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 136 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 136 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ EI++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
A GIPF+ETSAK VE AF T+ EI++
Sbjct: 149 HELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
QA+AD+ + F+ETSAK A+NV FL +A ++ K
Sbjct: 137 QAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A GIP++ETSAK VE AF T+ E ++
Sbjct: 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQ 165
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+ AD+LG F E SAK+ INV+Q F + I +KM
Sbjct: 151 RRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34
QA+AD+ + F+ETSAK A+NV + F+ +A ++
Sbjct: 134 QAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34
QA+AD+ + F+ETSAK A+NV + F+ +A ++
Sbjct: 132 QAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34
QA+AD+ + F+ETSAK A+NV + F+ +A ++
Sbjct: 134 QAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
AD LG F E SAKD INV+Q F + I +K
Sbjct: 137 ADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN 45
Q +A E G+ F+ETSAK A NV++ F +A + + QPT N
Sbjct: 141 QTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV---QPTEN 181
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+ AD+ GIP+ ETSA NVE+A T+ I K+M
Sbjct: 165 RELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
+ AD LG F E SAKD INV+Q F + I +K
Sbjct: 137 RQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN 40
Q A++LG F E SAK+ I+V QAF + I KM +
Sbjct: 152 QLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
FA+E G+ FLE SAK NVE AFL A +I + +
Sbjct: 161 FAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEI 34
FA+E G+ FLE SAK NVE AFL A +I
Sbjct: 146 FAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 2 QAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+ FA ++ G+ F E SAKD NV++ FL + +I KKM
Sbjct: 155 EKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q++AD+ + F+ETSAK ++NV + F+ +A ++ K
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q++AD+ + F+ETSAK ++NV + F+ +A ++ K
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q++AD+ + F+ETSAK ++NV + F+ +A ++ K
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q++AD+ + F+ETSAK ++NV + F+ +A ++ K
Sbjct: 136 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q++AD+ + F+ETSAK ++NV + F+ +A ++ K
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q++AD+ + F+ETSAK ++NV + F+ +A ++ K
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q++AD+ + F+ETSAK ++NV + F+ +A ++ K
Sbjct: 135 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q++AD+ + F+ETSAK ++NV + F+ +A ++ K
Sbjct: 134 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
A+E G+ ++ETSAK NV++ F + EI+ K
Sbjct: 140 AEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
A+E G+ ++ETSAK NV++ F + EI+ K
Sbjct: 136 AEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 32.7 bits (73), Expect = 0.047, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 13 LETSAKDAINVEQAFLTMAGEIKKKMG 39
+ETSAKD+ NVE+AFL +A E+ + G
Sbjct: 170 IETSAKDSSNVEEAFLRVATELIMRHG 196
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 2 QAFADELGIPFLETSAK---DAINVEQAFLTMAGEIK 35
Q FAD +P ETSAK D +VE F+T+A ++K
Sbjct: 151 QKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEI 34
+AD + F+ETSAK+AIN+ + F+ ++ I
Sbjct: 136 YADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEI 34
+AD + F+ETSAK+AIN+ + F+ ++ I
Sbjct: 137 YADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+ A++ GIP+ ETSA NVE++ T+ I K+M
Sbjct: 151 RELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+ A++ GIP+ ETSA NVE++ T+ I K+M
Sbjct: 151 RELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
+ A G F ETSAKD N+ +A L +A E+KK+
Sbjct: 163 EKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 4 FADELGIPFLETSAKDAINVEQAF 27
FA ++GI ETSAK+ +NVE+ F
Sbjct: 139 FAGQMGIQLFETSAKENVNVEEMF 162
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
FA E + FLETSA NVE+AFL A I K+
Sbjct: 156 FAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKG---QPIQQN 61
A EL + F+ETSAK NV+Q F +A + Q + + ++++ QP+ +
Sbjct: 145 AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEG 204
Query: 62 SNCC 65
C
Sbjct: 205 GCSC 208
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKS 47
+ A++ GIP+ ETSA + N+ A + I K+M + + +KS
Sbjct: 151 RELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM--ERSVDKS 194
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
+A A+E G PF+ETSAK V++ F EI ++M
Sbjct: 132 RALAEEWGCPFMETSAKSKTMVDELF----AEIVRQM 164
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q A +L + ++E SAK +NV+QAF + I+K
Sbjct: 134 QQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
AD+ + ++ETSAK NV++ F + EI+ +
Sbjct: 136 ADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 2 QAFADELGIPFLETSAK---DAINVEQAFLTMAGEIK 35
Q FAD P ETSAK D +VE F T+A ++K
Sbjct: 160 QKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLK 196
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
+ A++ GIP+ ETSA NVE++ T+ I K+
Sbjct: 151 RELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEI 34
+A+ +G +ETSAK+AIN+E+ F ++ +I
Sbjct: 154 YAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36
Q++AD+ + F ETSAK + NV + F +A ++ K
Sbjct: 136 QSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
+ A++ GIP+ ETSA NVE++ T+ I K+
Sbjct: 151 RELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEI 34
A EL + F+ETSAK NV+Q F +A +
Sbjct: 134 AKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 2 QAFADELG-IPFLETSAKDAINVEQAFLTMA 31
Q A LG IP TSAK+AINV+ AF +A
Sbjct: 143 QELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKS 47
A EL + F+ETSAK NV+Q F +A + G + T ++S
Sbjct: 148 AKELNVMFIETSAKAGYNVKQLFRRVAAALP---GMESTQDRS 187
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEI 34
A EL + F+ETSAK NV+Q F +A +
Sbjct: 133 AKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEI 34
A EL + F+ETSAK NV+Q F +A +
Sbjct: 146 AKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEI 34
A EL + F+ETSAK NV+Q F +A +
Sbjct: 138 AKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKS 47
A EL + F+ETSAK NV+Q F +A + G + T ++S
Sbjct: 138 AKELNVMFIETSAKAGYNVKQLFRRVAAALP---GMESTQDRS 177
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMA 31
+ F++ + +LETSAK++ NVE+ FL +A
Sbjct: 155 EEFSEAQDMYYLETSAKESDNVEKLFLDLA 184
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEI 34
+A + + F+ETSA +A NVE AF + EI
Sbjct: 139 YAKKEKLAFIETSALEATNVELAFHQLLNEI 169
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38
FA E + FLETSA NVE+AF+ A +I K+
Sbjct: 141 FAQENELMFLETSALTGENVEEAFVQCARKILNKI 175
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 11 PFLETSAKDAINVEQAF 27
P+ ETSAKDA NV AF
Sbjct: 151 PYFETSAKDATNVAAAF 167
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 11 PFLETSAKDAINVEQAF 27
P+ ETSAKDA NV AF
Sbjct: 149 PYFETSAKDATNVAAAF 165
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 5 ADELGIPFLETSAKD-AINVEQAFLTMAGEIKKK 37
A + IP++ETSAKD +NV++ F + I+++
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 5 ADELGIPFLETSAKD-AINVEQAFLTMAGEIKKK 37
A + IP++ETSAKD +NV++ F + I+++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 5 ADELGIPFLETSAKD-AINVEQAFLTMAGEIKKK 37
A + IP++ETSAKD +NV++ F + I+++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 28.5 bits (62), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 5 ADELGIPFLETSAKD-AINVEQAFLTMAGEIKKK 37
A + IP++ETSAKD +NV++ F + I+++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIK-KKM 38
A++ + ++ETSAK NV++ F + EI+ +KM
Sbjct: 150 AEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIK-KKM 38
A++ + ++ETSAK NV++ F + EI+ +KM
Sbjct: 138 AEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 172
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIK-KKM 38
A++ + ++ETSAK NV++ F + EI+ +KM
Sbjct: 138 AEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 172
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 11 PFLETSAKDAINVEQAF 27
P+LETSAKD NV AF
Sbjct: 149 PYLETSAKDDTNVTVAF 165
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 11 PFLETSAKDAINVEQAF 27
P+ ETSAKD+ NV AF
Sbjct: 153 PYFETSAKDSTNVAAAF 169
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34
+ A+E G+ F ETSAK NV FL + +I
Sbjct: 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
A++ + ++ETSAK NV++ F + EI+ +
Sbjct: 146 AEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 12 FLETSAKDAINVEQAFLTMAGEIKK 36
FLE+SAK INV + F + +I +
Sbjct: 145 FLESSAKSKINVNEIFYDLVRQINR 169
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 12 FLETSAKDAINVEQAFLTMAGEIKK 36
FLE+SAK INV + F + +I +
Sbjct: 143 FLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 12 FLETSAKDAINVEQAFLTMAGEIKK 36
FLE+SAK INV + F + +I +
Sbjct: 143 FLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 12 FLETSAKDAINVEQAFLTMAGEIKK 36
FLE+SAK INV + F + +I +
Sbjct: 143 FLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
FA E + FLETSA +VE+AF+ A +I K
Sbjct: 142 FAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
FA E + FLETSA +VE+AF+ A +I K
Sbjct: 139 FAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM-------------GNQPTANKSS 48
+ FA E + F ETSA ++ NV++AF + I +K+ GN A+ +
Sbjct: 142 KTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPN 201
Query: 49 G-TVQMKGQPIQQN----SNCC 65
G T+ + P + +NCC
Sbjct: 202 GPTISLTPTPNENKKANGNNCC 223
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAF 27
QA A E F+ETSAK NV++ F
Sbjct: 137 QAVAQEWKCAFMETSAKMNYNVKELF 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,646,406
Number of Sequences: 62578
Number of extensions: 45504
Number of successful extensions: 273
Number of sequences better than 100.0: 154
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 154
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)