BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035388
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/68 (80%), Positives = 61/68 (89%), Gaps = 3/68 (4%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS--GTVQMKGQPIQ 59
+A ADELGIPFLETSAKD+INVEQAFLT+AGEIKKKMG+Q ANK+S GTVQMKGQPIQ
Sbjct: 137 RALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQ 196
Query: 60 QNS-NCCG 66
QN+ CCG
Sbjct: 197 QNNGGCCG 204
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS-GTVQMKGQPIQQ 60
+A ADE+GIPFLETSAKDA NVE+AF+TMAGEIK +M +QP N S TVQM+GQP+ Q
Sbjct: 137 KALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQ 196
Query: 61 NSNCC 65
S+CC
Sbjct: 197 QSSCC 201
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQP-TANKSSGTVQMKGQPIQQ 60
+AFADE+GIPF+ETSAK+A NV+QAF+ MA IK +M +QP AN TVQ++GQP+ Q
Sbjct: 137 KAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQ 196
Query: 61 NSNCC 65
++CC
Sbjct: 197 KTSCC 201
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSS-GTVQMKGQPIQQ 60
+AFADE+GIPF+ETSAKDA NVEQAF+ M+ IK++M +QP N + TVQ++GQP+ Q
Sbjct: 137 KAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQ 196
Query: 61 NSNCC 65
+ CC
Sbjct: 197 KNGCC 201
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN 61
+AFADELGIPFLETSAK+A NVE+AF+ M IK +M +QP TVQ++GQP+ Q
Sbjct: 137 KAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPTVQIRGQPVNQQ 196
Query: 62 SNCC 65
S CC
Sbjct: 197 SGCC 200
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN 61
+AFADELGIPFLETSAK+A NVE+AF+ M IK +M +QP TVQ++GQP+ Q
Sbjct: 137 KAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGAKPPTVQIRGQPVNQQ 196
Query: 62 SNCC 65
S CC
Sbjct: 197 SGCC 200
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/67 (59%), Positives = 52/67 (77%), Gaps = 3/67 (4%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTV--QMKGQPIQ 59
+AFADE+GIPFLETSAK+A NVEQAF+TMA EIK +M +QP K+ G V +G+PI
Sbjct: 137 KAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPIN 196
Query: 60 -QNSNCC 65
++S+CC
Sbjct: 197 SKSSSCC 203
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 75.5 bits (184), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/70 (60%), Positives = 51/70 (72%), Gaps = 6/70 (8%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK-KMGNQPT-ANKSSGTVQMKGQPIQ 59
QA+A E+GIPFLETSAK++INVE+AFL M+ IKK K G+Q K S VQMKG+PIQ
Sbjct: 137 QAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQ 196
Query: 60 Q----NSNCC 65
Q +S CC
Sbjct: 197 QEQQKSSRCC 206
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT-VQMKGQPIQQN- 61
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG TA + + V+++ P++Q+
Sbjct: 142 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201
Query: 62 SNCC 65
CC
Sbjct: 202 GGCC 205
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT-VQMKGQPIQQN- 61
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG TA + + V+++ P++Q+
Sbjct: 142 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201
Query: 62 SNCC 65
CC
Sbjct: 202 GGCC 205
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT-VQMKGQPIQQN- 61
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG TA + + V+++ P++Q+
Sbjct: 142 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201
Query: 62 SNCC 65
CC
Sbjct: 202 GGCC 205
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT-VQMKGQPIQQN- 61
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG TA + + V+++ P++Q+
Sbjct: 142 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201
Query: 62 SNCC 65
CC
Sbjct: 202 GGCC 205
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT-VQMKGQPIQQN- 61
FAD LGIPFLETSAK+A NVEQ+F+TMA EIKK+MG TA + + V+++ P++Q+
Sbjct: 142 FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSG 201
Query: 62 SNCC 65
CC
Sbjct: 202 GGCC 205
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTAN---KSSGTVQMKGQPI 58
+ FAD L IPFLETSAKD+ NVEQAFLTM+ +IK++MGN A+ KSS V
Sbjct: 137 KEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQGTNVS 196
Query: 59 QQNSNCC 65
Q +SNCC
Sbjct: 197 QSSSNCC 203
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 3/67 (4%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ--MKGQPI- 58
+AFADE+GIPFLETSAK+A NVEQAF+TMA EIK +M +QP K G V +G+PI
Sbjct: 137 KAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKPGGPVVRPTEGKPIN 196
Query: 59 QQNSNCC 65
++S+CC
Sbjct: 197 NKSSSCC 203
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQ- 60
+ FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG + +++ P++Q
Sbjct: 137 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKQA 196
Query: 61 NSNCC 65
CC
Sbjct: 197 GGGCC 201
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQ- 60
+ FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG + +++ P++Q
Sbjct: 137 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKQA 196
Query: 61 NSNCC 65
CC
Sbjct: 197 GGGCC 201
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ypt-1
PE=3 SV=1
Length = 203
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK-GQPIQQ 60
+ FAD LGIPFLETSAK+A NVEQAFLTMA +IK++MG+ N + +V + G +
Sbjct: 137 KEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSN 196
Query: 61 NSN--CC 65
NS+ CC
Sbjct: 197 NSSGGCC 203
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGT-VQMKGQPIQQ 60
+ FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG T+ S + V ++ P++
Sbjct: 137 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNIQSTPVKS 196
Query: 61 NSNCC 65
+ C
Sbjct: 197 SGGGC 201
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1
Length = 201
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN 61
+ FAD LG+PFLETSAK+A NVEQAF+TMA EIKK+MG + +++ P++
Sbjct: 137 KEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKSA 196
Query: 62 SNCC 65
S C
Sbjct: 197 SGGC 200
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN 61
+ FAD LG+PFLETSAK+A NVEQAF+TMA EIKK+MG + +++ P++
Sbjct: 137 KEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPA 196
Query: 62 SNCC 65
S C
Sbjct: 197 SGGC 200
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQ-Q 60
+ FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG + +++ P++
Sbjct: 137 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPA 196
Query: 61 NSNCC 65
CC
Sbjct: 197 GGGCC 201
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQ-PIQQNS 62
+AD+LGIPFLETSAK+A NVEQAF+TMA EIK +MG A+ S +V++ P+ N
Sbjct: 142 YADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKINSSTPVSANK 201
Query: 63 -NCC 65
CC
Sbjct: 202 GGCC 205
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQ-Q 60
+ FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG + +++ P++
Sbjct: 137 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPA 196
Query: 61 NSNCC 65
CC
Sbjct: 197 GGGCC 201
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQ-Q 60
+ FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG + +++ P++
Sbjct: 137 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPA 196
Query: 61 NSNCC 65
CC
Sbjct: 197 GGGCC 201
>sp|Q92928|RAB1C_HUMAN Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5
SV=2
Length = 201
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQ-QNS 62
FAD LGIPFLETSAK+A NVEQAF+TMA EIKK+MG + +++ P++
Sbjct: 139 FADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGERPNLKIDSTPVKPAGG 198
Query: 63 NCC 65
CC
Sbjct: 199 GCC 201
>sp|P34139|RAB1A_DICDI Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A
PE=2 SV=2
Length = 202
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM-GNQPTAN-KSSGTVQMKGQPIQ 59
+AFAD L IPFLETSAK + NVEQAF+TMA EIK ++ +QPT + V PI
Sbjct: 137 KAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPIS 196
Query: 60 QNSNCC 65
S CC
Sbjct: 197 PKSGCC 202
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1
PE=3 SV=1
Length = 201
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN-- 61
FA+ LGI FLETSAK+A NVE+AF+ MA +IKK+M N P A K +G GQ + N
Sbjct: 139 FAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPK-AGVKLTPGQQVPSNGG 197
Query: 62 SNCC 65
S CC
Sbjct: 198 SKCC 201
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-QPTANKS--SGTVQMKG-QP 57
+ +AD +GIPFLETSAK + NVEQAF+ MA EIKK G QP N + + V+ G P
Sbjct: 137 REYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNSTYNAHVVKPTGFTP 196
Query: 58 IQQNSNC 64
I + C
Sbjct: 197 IGKKKKC 203
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 35/41 (85%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQP 42
++ ADE GI FLETSAK++INVE+AF+++A +IKK+M + P
Sbjct: 144 KSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP 184
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG----NQPTANKS-SGTVQMKGQ 56
+ FAD +PFLETSA D+ NVE AFLTMA +IK+ M N+ T K G V +KGQ
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQ 196
Query: 57 PIQQNSNCC 65
+ C
Sbjct: 197 SLTNTGGGC 205
>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B
PE=2 SV=1
Length = 203
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN 61
++ ADE GI FLETSAK+++NVE+AF+ +A +IKK+M + P N T+ + P +
Sbjct: 144 KSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTP--NDPDHTICI--TPNNKK 199
Query: 62 SNCC 65
+ CC
Sbjct: 200 NTCC 203
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK-----GQ 56
QA ADE GI F ETSAK +NVE+ F ++A +IK+++ + T ++ ++ +K G
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSGN 204
Query: 57 PIQQNSNCCG 66
S CCG
Sbjct: 205 QAAAKSACCG 214
>sp|Q96AX2|RAB37_HUMAN Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3
Length = 223
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN 61
+ A E G+PFLETSAK +NVE AFL +A E+K + G+Q A++ S ++ + ++
Sbjct: 159 ETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQ--ADEPSFQIRDYVESQKKR 216
Query: 62 SNCC 65
S+CC
Sbjct: 217 SSCC 220
>sp|Q9JKM7|RAB37_MOUSE Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2
Length = 223
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN 61
+ A E G+PF+ETSAK +NVE AFL +A E+K + G QP ++ S ++ + ++
Sbjct: 159 ETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQP--DEPSFQIRDYVESQKKR 216
Query: 62 SNCC 65
S+CC
Sbjct: 217 SSCC 220
>sp|Q54E92|RABG1_DICDI Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3
SV=1
Length = 196
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN 61
Q +AD LGIPF+ETSA +NVE+AF+ MA EI + N +K S + G P +
Sbjct: 136 QEYADILGIPFIETSATTGVNVEEAFMAMADEIYR---NHIGGSKPSVVKPVCGSPPRTK 192
Query: 62 SNCC 65
N C
Sbjct: 193 KNIC 196
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-----QPTANKSSGTVQMKGQ 56
QA ADE GI F ETSAK +NVE+ F ++ +IK+++ + +P K S T Q G
Sbjct: 145 QALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGA 204
Query: 57 -PIQQNSNCCG 66
Q S CCG
Sbjct: 205 GQATQKSACCG 215
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37
QA ADELG+ FLE SAK +NV++AF T+A EIKK+
Sbjct: 138 QALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQ 173
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 32/39 (82%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN 40
++FA+ GIPF+ETSAK+A NVE+ F++MA +IK ++ +
Sbjct: 139 KSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD 177
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGN-----QPTANKSSGTVQMKG- 55
QA ADE G+ F ETSAK +NVE+ F ++A +IK+++ + +P K + + Q G
Sbjct: 145 QALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGAGT 204
Query: 56 QPIQQNSNCCG 66
Q S CCG
Sbjct: 205 SQATQKSACCG 215
>sp|P41924|RYL1_YARLI Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL1 PE=3 SV=1
Length = 203
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMKGQPIQQN 61
QA AD+ GIPFLE S+K INVE+ F ++A I+ + SG + +
Sbjct: 140 QALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESGSGGINIAEGEENSA 199
Query: 62 SNCC 65
S CC
Sbjct: 200 SKCC 203
>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1
Length = 207
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 60
+ A + GI F+ETSAK INVE AF T+A +IK KM + N G+ Q +K P QQ
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 60
+ A + GI F+ETSAK INVE AF T+A +IK KM + N G+ Q +K P QQ
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 60
+ A + GI F+ETSAK INVE AF T+A +IK KM + N G+ Q +K P QQ
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 60
+ A + GI F+ETSAK INVE AF T+A +IK KM + N G+ Q +K P QQ
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196
>sp|A4FV54|RAB8A_BOVIN Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1
Length = 207
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 60
+ A + GI F+ETSAK INVE AF T+A +IK KM + N G+ Q +K P QQ
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196
>sp|Q54FL2|RABG2_DICDI Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3
SV=2
Length = 197
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM--GNQPTA 44
+ +AD LGIPF+E SA +NVE+AF+ MA EI + G++P+
Sbjct: 135 REYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPSV 179
>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1
SV=1
Length = 218
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSG 49
QA ADE GI F ETSAK NVEQ FL++A +IK+++ T + G
Sbjct: 145 QALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDTKAEPQG 192
>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1
SV=1
Length = 216
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQMK-----GQ 56
QA ADE GI F ETSAK +NVE F+++A +IK+++ T + G K
Sbjct: 145 QALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLTETDTKAEPQGIKITKQDTAASS 204
Query: 57 PIQQNSNCC 65
+ S CC
Sbjct: 205 STAEKSACC 213
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMGNQPTANKSSGTVQ-MKGQPIQQ 60
+ A GI F+ETSAK IN+E AF T+A +IK KM + N G+ Q +K P QQ
Sbjct: 137 EKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQ 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,379,774
Number of Sequences: 539616
Number of extensions: 610293
Number of successful extensions: 1882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1447
Number of HSP's gapped (non-prelim): 454
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)