Query 035388
Match_columns 66
No_of_seqs 178 out of 1225
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 03:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 88.6 3.1 38 1-38 141-178 (216)
2 2bcg_Y Protein YP2, GTP-bindin 99.3 4E-12 1.4E-16 67.3 3.6 37 2-38 137-173 (206)
3 1vg8_A RAS-related protein RAB 99.1 2.1E-11 7.1E-16 64.3 1.0 36 3-38 141-177 (207)
4 2bov_A RAla, RAS-related prote 99.0 1.3E-10 4.5E-15 61.1 3.3 36 2-37 143-178 (206)
5 2g3y_A GTP-binding protein GEM 99.0 6.6E-10 2.3E-14 59.8 4.4 36 2-37 169-204 (211)
6 2cjw_A GTP-binding protein GEM 98.9 1.4E-09 4.9E-14 57.3 4.7 37 2-38 138-174 (192)
7 2gf0_A GTP-binding protein DI- 98.9 6.5E-10 2.2E-14 58.2 1.7 35 2-36 137-171 (199)
8 3cpj_B GTP-binding protein YPT 98.9 1.8E-09 6.1E-14 57.9 3.2 36 2-37 142-177 (223)
9 3ihw_A Centg3; RAS, centaurin, 98.8 3.7E-09 1.3E-13 55.3 4.2 36 2-37 145-181 (184)
10 2nzj_A GTP-binding protein REM 98.8 4.6E-09 1.6E-13 53.8 4.5 37 2-38 135-171 (175)
11 3q85_A GTP-binding protein REM 98.8 4.3E-09 1.5E-13 53.7 4.1 36 2-37 133-168 (169)
12 3dz8_A RAS-related protein RAB 98.8 5.8E-09 2E-13 54.5 4.3 37 2-38 152-188 (191)
13 3cbq_A GTP-binding protein REM 98.8 4.2E-09 1.5E-13 55.6 3.5 36 2-37 154-189 (195)
14 4dsu_A GTPase KRAS, isoform 2B 98.8 8.2E-09 2.8E-13 53.4 4.3 37 2-38 132-168 (189)
15 3q72_A GTP-binding protein RAD 98.8 6.7E-09 2.3E-13 52.9 3.9 36 2-37 130-165 (166)
16 2wji_A Ferrous iron transport 98.8 5.2E-09 1.8E-13 53.7 3.3 33 2-34 131-163 (165)
17 2fu5_C RAS-related protein RAB 98.8 9.8E-09 3.3E-13 53.1 4.2 37 2-38 137-173 (183)
18 2a5j_A RAS-related protein RAB 98.8 1.2E-08 4.2E-13 53.3 4.6 37 2-38 150-186 (191)
19 3reg_A RHO-like small GTPase; 98.8 7.3E-09 2.5E-13 54.2 3.7 36 2-37 153-189 (194)
20 2ew1_A RAS-related protein RAB 98.8 1.6E-08 5.4E-13 53.7 5.0 37 2-38 155-191 (201)
21 3kkq_A RAS-related protein M-R 98.8 1.2E-08 4E-13 52.8 4.3 35 2-36 147-182 (183)
22 2iwr_A Centaurin gamma 1; ANK 98.8 8.8E-09 3E-13 53.1 3.8 37 2-38 134-171 (178)
23 3tkl_A RAS-related protein RAB 98.8 1.4E-08 4.8E-13 53.0 4.7 38 2-39 145-182 (196)
24 2atx_A Small GTP binding prote 98.7 1.5E-08 5.3E-13 52.9 4.5 34 2-35 158-192 (194)
25 3t1o_A Gliding protein MGLA; G 98.7 1E-08 3.5E-13 53.3 3.8 37 2-38 157-194 (198)
26 2q3h_A RAS homolog gene family 98.7 1.7E-08 6E-13 53.0 4.6 37 2-38 160-197 (201)
27 1g16_A RAS-related protein SEC 98.7 1.8E-08 6.2E-13 51.3 4.5 36 2-37 131-166 (170)
28 2hup_A RAS-related protein RAB 98.7 1.9E-08 6.4E-13 53.2 4.6 37 2-38 158-195 (201)
29 3q3j_B RHO-related GTP-binding 98.7 5E-09 1.7E-13 56.0 2.4 36 2-37 167-204 (214)
30 2gf9_A RAS-related protein RAB 98.7 2.1E-08 7.1E-13 52.3 4.7 37 2-38 151-187 (189)
31 1z0f_A RAB14, member RAS oncog 98.7 9.7E-09 3.3E-13 52.7 3.4 35 2-36 144-178 (179)
32 2bme_A RAB4A, RAS-related prot 98.7 2.2E-08 7.4E-13 51.9 4.7 38 2-39 139-176 (186)
33 2p5s_A RAS and EF-hand domain 98.7 8.8E-09 3E-13 54.2 3.1 34 2-35 163-196 (199)
34 2o52_A RAS-related protein RAB 98.7 2.4E-08 8.3E-13 52.7 4.7 38 2-39 154-191 (200)
35 2atv_A RERG, RAS-like estrogen 98.7 2.4E-08 8.1E-13 52.4 4.6 37 2-38 156-193 (196)
36 3t5g_A GTP-binding protein RHE 98.7 5.8E-09 2E-13 53.9 2.2 37 2-38 135-171 (181)
37 2oil_A CATX-8, RAS-related pro 98.7 2.2E-08 7.7E-13 52.3 4.4 37 2-38 154-190 (193)
38 3clv_A RAB5 protein, putative; 98.7 2.4E-08 8.3E-13 52.0 4.5 37 2-38 170-206 (208)
39 2fn4_A P23, RAS-related protei 98.7 2.8E-08 9.5E-13 51.1 4.6 37 2-38 138-174 (181)
40 3bwd_D RAC-like GTP-binding pr 98.7 1.4E-08 4.8E-13 52.3 3.5 34 2-35 146-180 (182)
41 3c5c_A RAS-like protein 12; GD 98.7 7.7E-09 2.6E-13 54.1 2.5 34 2-35 151-185 (187)
42 2j1l_A RHO-related GTP-binding 98.7 1.9E-08 6.6E-13 53.6 4.0 36 2-37 174-210 (214)
43 2hxs_A RAB-26, RAS-related pro 98.7 1.3E-08 4.6E-13 52.3 3.2 35 2-36 139-173 (178)
44 1z08_A RAS-related protein RAB 98.7 1.5E-08 5.2E-13 51.6 3.4 34 2-35 135-168 (170)
45 3tw8_B RAS-related protein RAB 98.7 4E-08 1.4E-12 50.5 4.8 37 2-38 137-173 (181)
46 2a9k_A RAS-related protein RAL 98.7 3.4E-08 1.2E-12 50.9 4.5 37 2-38 147-183 (187)
47 1u8z_A RAS-related protein RAL 98.7 2.2E-08 7.4E-13 50.8 3.6 35 2-36 133-167 (168)
48 3oes_A GTPase rhebl1; small GT 98.6 1.2E-08 4.1E-13 53.8 2.3 36 2-37 153-188 (201)
49 3bc1_A RAS-related protein RAB 98.6 5.7E-08 2E-12 50.3 4.9 37 2-38 151-187 (195)
50 2g6b_A RAS-related protein RAB 98.6 3.6E-08 1.2E-12 50.7 3.9 35 2-36 140-174 (180)
51 2f7s_A C25KG, RAS-related prot 98.6 5.3E-08 1.8E-12 51.7 4.7 37 2-38 165-201 (217)
52 2j0v_A RAC-like GTP-binding pr 98.6 4.6E-08 1.6E-12 51.8 4.2 36 2-37 145-181 (212)
53 1zbd_A Rabphilin-3A; G protein 98.6 3.8E-08 1.3E-12 51.7 3.7 37 2-38 137-173 (203)
54 1mh1_A RAC1; GTP-binding, GTPa 98.6 3.7E-08 1.3E-12 50.8 3.4 35 2-36 145-180 (186)
55 1z2a_A RAS-related protein RAB 98.6 2.7E-08 9.2E-13 50.6 2.8 35 2-36 133-167 (168)
56 3con_A GTPase NRAS; structural 98.6 8.8E-08 3E-12 49.8 4.8 37 2-38 149-185 (190)
57 1x3s_A RAS-related protein RAB 98.6 5.6E-08 1.9E-12 50.6 3.8 36 2-37 144-179 (195)
58 2il1_A RAB12; G-protein, GDP, 98.6 5.8E-08 2E-12 50.9 3.8 36 2-37 155-191 (192)
59 1kao_A RAP2A; GTP-binding prot 98.6 3.4E-08 1.1E-12 50.0 2.8 35 2-36 132-166 (167)
60 1ky3_A GTP-binding protein YPT 98.6 9.6E-08 3.3E-12 49.0 4.6 37 2-38 143-180 (182)
61 2gco_A H9, RHO-related GTP-bin 98.6 7.1E-08 2.4E-12 50.8 4.1 34 2-35 165-199 (201)
62 1m7b_A RND3/RHOE small GTP-bin 98.6 1.9E-08 6.5E-13 52.3 1.7 35 2-36 147-183 (184)
63 2ce2_X GTPase HRAS; signaling 98.6 7.5E-08 2.6E-12 48.6 3.8 34 2-35 131-164 (166)
64 2fv8_A H6, RHO-related GTP-bin 98.6 9E-08 3.1E-12 50.6 4.1 35 2-36 165-200 (207)
65 1r2q_A RAS-related protein RAB 98.6 4.3E-08 1.5E-12 49.8 2.7 33 2-34 135-167 (170)
66 1wms_A RAB-9, RAB9, RAS-relate 98.6 7.7E-08 2.6E-12 49.3 3.7 35 2-36 139-174 (177)
67 3cph_A RAS-related protein SEC 98.5 1E-07 3.5E-12 50.3 4.2 37 2-38 148-184 (213)
68 2efe_B Small GTP-binding prote 98.5 3.2E-08 1.1E-12 50.9 2.1 35 2-36 141-175 (181)
69 1gwn_A RHO-related GTP-binding 98.5 3.5E-08 1.2E-12 52.5 2.3 35 2-36 168-204 (205)
70 1c1y_A RAS-related protein RAP 98.5 9.7E-08 3.3E-12 48.4 3.9 34 2-35 132-166 (167)
71 2cxx_A Probable GTP-binding pr 98.5 1.1E-07 3.9E-12 49.2 4.1 36 2-37 143-185 (190)
72 1z0j_A RAB-22, RAS-related pro 98.5 7.5E-08 2.6E-12 49.0 3.1 33 2-34 135-167 (170)
73 1ek0_A Protein (GTP-binding pr 98.5 4.6E-08 1.6E-12 49.7 2.3 33 2-34 135-167 (170)
74 2wjg_A FEOB, ferrous iron tran 98.5 1.3E-07 4.6E-12 49.0 3.8 35 2-36 135-169 (188)
75 2qu8_A Putative nucleolar GTP- 98.5 1.9E-07 6.4E-12 50.2 4.5 35 3-37 170-206 (228)
76 4bas_A ADP-ribosylation factor 98.5 1.3E-07 4.6E-12 49.3 3.8 33 6-38 159-191 (199)
77 4gzl_A RAS-related C3 botulinu 98.5 7.3E-08 2.5E-12 51.0 2.7 33 2-34 170-203 (204)
78 2yc2_C IFT27, small RAB-relate 98.5 1E-07 3.4E-12 50.0 3.0 36 2-37 157-193 (208)
79 2fg5_A RAB-22B, RAS-related pr 98.5 5E-08 1.7E-12 51.1 1.8 35 2-36 152-186 (192)
80 3llu_A RAS-related GTP-binding 98.5 3.4E-08 1.2E-12 51.9 1.1 31 3-34 161-195 (196)
81 2wkq_A NPH1-1, RAS-related C3 98.5 1.9E-07 6.4E-12 52.2 4.1 35 2-36 295-330 (332)
82 1z06_A RAS-related protein RAB 98.5 1.2E-07 4.1E-12 49.4 3.0 34 2-35 151-187 (189)
83 3th5_A RAS-related C3 botulinu 97.8 2.2E-08 7.5E-13 52.8 0.0 34 2-35 170-204 (204)
84 2erx_A GTP-binding protein DI- 98.4 1.1E-07 3.9E-12 48.3 2.6 33 2-34 133-165 (172)
85 3c5h_A Glucocorticoid receptor 98.4 2.3E-07 7.9E-12 50.9 3.9 34 2-35 220-254 (255)
86 1r8s_A ADP-ribosylation factor 98.4 5E-08 1.7E-12 49.5 1.2 28 9-36 135-162 (164)
87 2dyk_A GTP-binding protein; GT 98.4 1.6E-07 5.4E-12 47.4 2.9 31 3-34 129-160 (161)
88 2y8e_A RAB-protein 6, GH09086P 98.4 9.3E-08 3.2E-12 49.0 1.9 34 2-35 143-176 (179)
89 4djt_A GTP-binding nuclear pro 98.4 8.2E-08 2.8E-12 51.0 1.6 36 3-38 142-177 (218)
90 3gj0_A GTP-binding nuclear pro 98.4 1.1E-07 3.7E-12 50.7 2.0 35 3-37 142-176 (221)
91 2fh5_B SR-beta, signal recogni 98.4 3.1E-08 1.1E-12 52.5 -0.2 25 9-33 183-213 (214)
92 1upt_A ARL1, ADP-ribosylation 98.4 1.2E-07 4.1E-12 48.3 1.9 29 8-36 141-169 (171)
93 3l0i_B RAS-related protein RAB 98.4 2.2E-08 7.4E-13 52.7 -1.1 35 2-36 162-196 (199)
94 1fzq_A ADP-ribosylation factor 98.3 8.4E-08 2.9E-12 49.9 0.7 28 9-36 151-178 (181)
95 3a1s_A Iron(II) transport prot 98.3 1.5E-06 5.2E-11 47.9 4.9 34 2-35 133-166 (258)
96 3pqc_A Probable GTP-binding pr 98.3 6.1E-07 2.1E-11 46.5 3.2 32 4-35 161-193 (195)
97 2b6h_A ADP-ribosylation factor 98.3 1.2E-07 4.2E-12 49.7 0.5 27 9-35 164-190 (192)
98 3r7w_B Gtpase2, GTP-binding pr 98.3 2.1E-08 7.3E-13 57.3 -2.6 34 2-36 137-174 (331)
99 2f9l_A RAB11B, member RAS onco 98.3 1.6E-06 5.6E-11 45.5 4.6 37 2-38 134-170 (199)
100 2x77_A ADP-ribosylation factor 98.3 4.1E-07 1.4E-11 47.3 2.2 29 9-37 157-185 (189)
101 3b1v_A Ferrous iron uptake tra 98.2 1.8E-06 6.3E-11 48.0 4.5 33 2-34 130-162 (272)
102 2qnr_A Septin-2, protein NEDD5 98.2 2.9E-07 9.9E-12 51.8 1.0 35 2-37 181-215 (301)
103 1oix_A RAS-related protein RAB 98.2 1.5E-06 5.1E-11 45.6 3.4 33 2-34 158-190 (191)
104 2lkc_A Translation initiation 98.2 5.7E-07 1.9E-11 46.1 1.7 28 10-37 145-172 (178)
105 1ksh_A ARF-like protein 2; sma 98.2 5.4E-07 1.8E-11 46.7 1.5 30 8-37 152-181 (186)
106 2zej_A Dardarin, leucine-rich 98.2 8.7E-07 3E-11 46.1 2.2 34 3-36 140-178 (184)
107 1svi_A GTP-binding protein YSX 98.2 1.6E-06 5.3E-11 45.1 3.1 27 8-34 167-193 (195)
108 1zd9_A ADP-ribosylation factor 98.1 2.8E-07 9.7E-12 48.0 0.1 28 9-36 158-185 (188)
109 2gj8_A MNME, tRNA modification 98.1 1.1E-06 3.8E-11 45.4 2.3 28 8-35 138-165 (172)
110 1moz_A ARL1, ADP-ribosylation 98.1 2E-06 6.7E-11 44.3 3.0 28 10-37 154-181 (183)
111 2h17_A ADP-ribosylation factor 98.1 4.2E-07 1.4E-11 47.1 0.5 25 9-33 156-180 (181)
112 1m2o_B GTP-binding protein SAR 98.1 7.4E-07 2.5E-11 46.7 1.1 25 9-33 165-189 (190)
113 1zj6_A ADP-ribosylation factor 98.1 2.3E-06 7.8E-11 44.4 3.0 29 8-36 150-178 (187)
114 1f6b_A SAR1; gtpases, N-termin 98.1 8.2E-07 2.8E-11 46.8 1.1 25 9-33 172-196 (198)
115 1cip_A Protein (guanine nucleo 98.1 1.3E-06 4.6E-11 50.2 1.9 30 8-37 316-345 (353)
116 2hf9_A Probable hydrogenase ni 98.1 9.1E-06 3.1E-10 43.3 4.9 33 4-36 190-224 (226)
117 3o47_A ADP-ribosylation factor 98.1 6E-07 2.1E-11 51.0 0.3 27 10-36 301-327 (329)
118 1u0l_A Probable GTPase ENGC; p 98.0 4.4E-06 1.5E-10 46.9 3.6 32 2-33 137-170 (301)
119 2e87_A Hypothetical protein PH 98.0 1.1E-05 3.6E-10 46.2 5.1 35 3-37 303-337 (357)
120 2h57_A ADP-ribosylation factor 98.0 3.3E-06 1.1E-10 43.9 2.3 28 9-36 160-187 (190)
121 2xtz_A Guanine nucleotide-bind 98.0 3E-06 1E-10 48.8 2.2 28 10-37 319-346 (354)
122 3iby_A Ferrous iron transport 97.9 8.8E-06 3E-10 44.8 3.6 32 2-33 133-164 (256)
123 3k53_A Ferrous iron transport 97.9 1.8E-05 6E-10 43.7 4.4 35 2-36 132-166 (271)
124 3ohm_A Guanine nucleotide-bind 97.9 2.6E-06 8.7E-11 48.7 0.9 31 7-37 289-319 (327)
125 3i8s_A Ferrous iron transport 97.9 7.6E-06 2.6E-10 45.4 2.3 34 2-35 135-168 (274)
126 4dcu_A GTP-binding protein ENG 97.8 2.3E-05 7.7E-10 46.2 4.1 29 9-37 342-370 (456)
127 4dhe_A Probable GTP-binding pr 97.8 2.5E-05 8.6E-10 41.4 3.8 29 8-36 183-211 (223)
128 1zcb_A G alpha I/13; GTP-bindi 97.8 1.4E-05 4.8E-10 46.2 2.4 31 8-38 325-355 (362)
129 1azs_C GS-alpha; complex (lyas 97.7 1.8E-05 6.1E-10 46.4 2.7 29 9-37 358-386 (402)
130 3dpu_A RAB family protein; roc 97.7 1.1E-05 3.8E-10 48.3 1.1 34 3-36 175-208 (535)
131 1mky_A Probable GTP-binding pr 97.7 6.4E-05 2.2E-09 44.1 4.1 28 9-36 328-355 (439)
132 2hjg_A GTP-binding protein ENG 97.6 3.5E-05 1.2E-09 45.2 3.0 30 8-37 321-350 (436)
133 3qq5_A Small GTP-binding prote 97.6 5.7E-06 1.9E-10 48.7 -0.5 34 3-36 163-196 (423)
134 3lvq_E ARF-GAP with SH3 domain 97.6 5.2E-05 1.8E-09 44.9 3.5 28 10-37 458-485 (497)
135 2yv5_A YJEQ protein; hydrolase 97.6 5.6E-05 1.9E-09 42.5 3.3 30 3-32 136-165 (302)
136 3iev_A GTP-binding protein ERA 97.6 9.8E-05 3.3E-09 41.6 4.0 33 3-35 147-181 (308)
137 1lnz_A SPO0B-associated GTP-bi 97.6 7.5E-05 2.6E-09 42.9 3.4 34 3-36 295-330 (342)
138 2wsm_A Hydrogenase expression/ 97.5 0.00024 8.1E-09 37.7 4.5 28 9-36 187-214 (221)
139 3gee_A MNME, tRNA modification 97.4 0.0002 6.9E-09 42.7 4.3 32 4-35 366-397 (476)
140 3r7w_A Gtpase1, GTP-binding pr 97.4 8.3E-05 2.8E-09 41.8 1.9 32 2-34 145-179 (307)
141 1yrb_A ATP(GTP)binding protein 97.3 0.00049 1.7E-08 37.3 4.5 31 5-35 224-256 (262)
142 4fid_A G protein alpha subunit 97.2 8.1E-05 2.8E-09 42.8 1.0 28 9-36 301-328 (340)
143 1mky_A Probable GTP-binding pr 97.2 0.00056 1.9E-08 40.2 4.3 31 7-37 136-167 (439)
144 1xzp_A Probable tRNA modificat 97.2 0.00027 9.1E-09 42.3 2.9 28 9-36 378-405 (482)
145 1udx_A The GTP-binding protein 97.1 0.00086 2.9E-08 39.5 4.5 33 5-37 294-326 (416)
146 3geh_A MNME, tRNA modification 97.1 0.00061 2.1E-08 40.6 3.8 28 9-36 357-384 (462)
147 3h2y_A GTPase family protein; 97.1 0.001 3.4E-08 38.5 4.5 29 5-33 126-157 (368)
148 1wb1_A Translation elongation 97.1 0.001 3.5E-08 39.7 4.5 27 9-35 162-188 (482)
149 3sjy_A Translation initiation 97.0 0.0007 2.4E-08 39.4 3.2 27 9-35 165-191 (403)
150 1s0u_A EIF-2-gamma, translatio 97.0 0.00067 2.3E-08 39.5 3.1 27 9-35 171-197 (408)
151 3p32_A Probable GTPase RV1496/ 96.9 0.001 3.6E-08 38.1 3.7 28 9-36 257-284 (355)
152 2qag_A Septin-2, protein NEDD5 96.9 0.00013 4.5E-09 42.0 -0.1 35 3-38 201-235 (361)
153 1kk1_A EIF2gamma; initiation o 96.8 0.0013 4.3E-08 38.3 3.6 27 9-35 173-199 (410)
154 3cb4_D GTP-binding protein LEP 96.7 0.0022 7.5E-08 39.4 3.9 33 3-35 146-181 (599)
155 2qag_C Septin-7; cell cycle, c 96.6 0.00032 1.1E-08 41.3 0.0 32 3-34 194-225 (418)
156 2ywe_A GTP-binding protein LEP 96.6 0.0024 8.2E-08 39.3 3.6 33 3-35 148-183 (600)
157 2qtf_A Protein HFLX, GTP-bindi 96.6 0.0031 1.1E-07 36.5 3.8 28 10-37 328-355 (364)
158 3izy_P Translation initiation 96.5 0.00092 3.2E-08 40.6 1.6 25 10-34 142-166 (537)
159 2hjg_A GTP-binding protein ENG 96.4 0.0028 9.5E-08 37.2 2.8 28 8-35 136-164 (436)
160 3ec1_A YQEH GTPase; atnos1, at 96.4 0.0063 2.2E-07 35.2 4.3 29 5-33 128-159 (369)
161 1pui_A ENGB, probable GTP-bind 96.3 0.0048 1.6E-07 32.2 3.3 25 10-34 173-197 (210)
162 1ega_A Protein (GTP-binding pr 96.2 0.0044 1.5E-07 34.8 3.1 31 4-34 142-173 (301)
163 2xtp_A GTPase IMAP family memb 96.1 0.0013 4.5E-08 35.8 0.6 34 4-37 171-209 (260)
164 3tr5_A RF-3, peptide chain rel 96.0 0.0029 1E-07 38.3 1.7 26 10-35 251-276 (528)
165 1zo1_I IF2, translation initia 95.9 0.0014 4.7E-08 39.5 0.1 23 10-32 141-163 (501)
166 2dy1_A Elongation factor G; tr 95.9 0.0053 1.8E-07 38.0 2.6 26 10-35 248-273 (665)
167 1wf3_A GTP-binding protein; GT 95.9 0.0021 7.3E-08 36.1 0.8 26 10-35 147-172 (301)
168 2p67_A LAO/AO transport system 95.8 0.0096 3.3E-07 34.0 3.2 27 9-35 234-260 (341)
169 2elf_A Protein translation elo 95.6 0.015 5E-07 33.7 3.6 26 10-35 149-179 (370)
170 2aka_B Dynamin-1; fusion prote 95.6 0.0016 5.6E-08 35.9 -0.4 24 11-34 228-251 (299)
171 1g7s_A Translation initiation 95.5 0.013 4.5E-07 36.0 3.3 27 10-36 192-218 (594)
172 2www_A Methylmalonic aciduria 95.5 0.017 5.7E-07 33.2 3.5 26 9-34 252-277 (349)
173 1d2e_A Elongation factor TU (E 95.3 0.0073 2.5E-07 35.1 1.6 31 4-34 148-193 (397)
174 1zun_B Sulfate adenylate trans 95.3 0.0019 6.4E-08 37.9 -0.9 27 3-29 186-217 (434)
175 1puj_A YLQF, conserved hypothe 95.0 0.03 1E-06 31.3 3.5 29 7-35 77-105 (282)
176 1jny_A EF-1-alpha, elongation 94.8 0.0042 1.4E-07 36.5 -0.4 26 3-28 175-205 (435)
177 3t5d_A Septin-7; GTP-binding p 94.6 0.0073 2.5E-07 33.3 0.4 30 5-34 173-202 (274)
178 3j2k_7 ERF3, eukaryotic polype 94.3 0.027 9.2E-07 33.3 2.2 19 10-28 199-217 (439)
179 2c78_A Elongation factor TU-A; 94.0 0.016 5.5E-07 33.7 0.9 13 10-22 168-180 (405)
180 4dcu_A GTP-binding protein ENG 93.9 0.036 1.2E-06 32.7 2.2 25 11-35 160-184 (456)
181 1r5b_A Eukaryotic peptide chai 93.1 0.008 2.8E-07 35.7 -1.4 18 10-27 226-243 (467)
182 2qm8_A GTPase/ATPase; G protei 92.8 0.16 5.4E-06 29.0 3.7 26 9-34 234-259 (337)
183 3avx_A Elongation factor TS, e 92.7 0.077 2.6E-06 35.6 2.6 25 10-34 452-484 (1289)
184 1f60_A Elongation factor EEF1A 92.3 0.057 1.9E-06 32.1 1.5 24 4-27 175-203 (458)
185 3p26_A Elongation factor 1 alp 91.9 0.11 3.6E-06 31.0 2.3 18 9-26 211-228 (483)
186 1nrj_B SR-beta, signal recogni 91.0 0.011 3.8E-07 31.0 -2.3 21 3-23 151-171 (218)
187 3mca_A HBS1, elongation factor 90.8 0.069 2.4E-06 32.8 0.8 14 11-24 358-371 (592)
188 2j69_A Bacterial dynamin-like 89.9 0.31 1.1E-05 30.5 3.1 27 10-36 285-325 (695)
189 3izq_1 HBS1P, elongation facto 89.4 0.088 3E-06 32.5 0.5 18 10-27 346-363 (611)
190 3cnl_A YLQF, putative uncharac 88.1 0.4 1.4E-05 26.5 2.5 26 6-32 72-97 (262)
191 2h5e_A Peptide chain release f 87.9 0.31 1.1E-05 29.6 2.1 26 10-35 252-277 (529)
192 3l2o_B F-box only protein 4; s 87.9 0.43 1.5E-05 27.5 2.5 24 12-35 284-307 (312)
193 2x2e_A Dynamin-1; nitration, h 87.8 0.029 1E-06 32.0 -2.2 23 11-33 233-255 (353)
194 3l82_B F-box only protein 4; T 87.4 0.22 7.5E-06 27.4 1.2 23 12-34 199-221 (227)
195 2dby_A GTP-binding protein; GD 86.7 0.1 3.5E-06 30.3 -0.4 34 2-35 228-261 (368)
196 3lxx_A GTPase IMAP family memb 85.2 1.8 6.2E-05 23.0 4.1 35 2-36 175-214 (239)
197 2rdo_7 EF-G, elongation factor 82.2 1.2 4E-05 28.1 2.8 26 10-35 262-287 (704)
198 1dar_A EF-G, elongation factor 82.0 0.9 3.1E-05 28.5 2.2 26 10-35 256-281 (691)
199 3t34_A Dynamin-related protein 79.2 0.12 4E-06 29.6 -2.1 28 7-34 232-259 (360)
200 3lxw_A GTPase IMAP family memb 75.7 4.3 0.00015 21.9 3.5 35 3-37 170-209 (247)
201 2xex_A Elongation factor G; GT 75.0 2.4 8.3E-05 26.7 2.6 26 10-35 254-279 (693)
202 2rcn_A Probable GTPase ENGC; Y 74.4 5.8 0.0002 23.1 4.0 24 7-30 190-213 (358)
203 3vqt_A RF-3, peptide chain rel 69.0 2.5 8.6E-05 25.9 1.7 26 10-35 269-294 (548)
204 3l32_A Phosphoprotein; antipar 66.6 6 0.0002 16.1 2.9 20 18-37 21-40 (45)
205 3pg5_A Uncharacterized protein 65.0 5.4 0.00018 22.9 2.5 38 4-41 306-352 (361)
206 3j25_A Tetracycline resistance 62.7 8.8 0.0003 23.9 3.2 26 10-35 213-238 (638)
207 2nps_B Syntaxin 13, vesicle-as 59.7 11 0.00036 16.6 2.6 16 22-37 17-32 (71)
208 1gl2_B Syntaxin 7; membrane pr 55.7 12 0.00042 16.1 2.6 16 22-37 20-35 (65)
209 1jwy_B Dynamin A GTPase domain 55.3 24 0.00082 19.4 4.0 26 10-35 230-261 (315)
210 1n7s_B Syntaxin 1A; neuronal s 53.8 14 0.00047 16.1 2.6 16 22-37 23-38 (68)
211 1jth_B Syntaxin 1A; coiled-coi 53.7 15 0.0005 16.4 2.6 16 22-37 21-36 (77)
212 3b5n_B Protein SSO1; snare com 51.3 16 0.00053 16.0 2.6 16 22-37 21-36 (69)
213 1t9h_A YLOQ, probable GTPase E 49.2 1.9 6.6E-05 24.5 -1.1 23 7-29 148-170 (307)
214 1sfc_B Protein (syntaxin 1A), 47.1 21 0.00071 16.2 2.6 16 22-37 32-47 (83)
215 1j5u_A Archease, possible chap 44.3 21 0.00072 17.9 2.4 20 19-38 28-47 (136)
216 3zvr_A Dynamin-1; hydrolase, D 43.8 2.6 9E-05 27.1 -1.2 22 12-33 254-275 (772)
217 3ahu_A Protein HFQ; SM-like mo 38.4 27 0.00092 15.9 2.0 19 15-33 3-21 (78)
218 3tnt_A SARS coronavirus main p 38.4 18 0.00063 20.7 1.8 34 3-36 232-274 (306)
219 2nqb_D Histone H2B; nucleosome 38.3 32 0.0011 17.2 2.4 14 23-36 64-77 (123)
220 1tzy_B Histone H2B; histone-fo 37.0 34 0.0012 17.1 2.4 14 23-36 67-80 (126)
221 2pju_A Propionate catabolism o 34.1 35 0.0012 18.5 2.4 32 3-36 166-197 (225)
222 1ko7_A HPR kinase/phosphatase; 33.4 32 0.0011 19.7 2.3 32 2-33 97-128 (314)
223 2vqc_A Hypothetical 13.2 kDa p 31.4 4.5 0.00015 19.2 -1.2 23 12-34 38-60 (118)
224 3hd7_B Syntaxin-1A; membrane p 30.9 49 0.0017 15.8 2.6 16 22-37 32-47 (109)
225 1jw3_A Conserved hypothetical 30.1 57 0.002 16.3 3.4 20 20-39 19-38 (140)
226 1skv_A ORF D-63, hypothetical 28.4 18 0.00062 16.0 0.6 16 20-35 4-19 (69)
227 2lc3_A E3 ubiquitin-protein li 27.6 7.5 0.00026 18.1 -0.8 11 12-22 76-86 (88)
228 1irq_A Omega transcriptional r 27.4 48 0.0016 14.6 2.0 24 15-38 43-66 (71)
229 3a1y_A 50S ribosomal protein P 26.1 18 0.00062 15.4 0.3 15 15-29 42-56 (58)
230 1nyc_A Staphostatin B, cystein 26.0 30 0.001 16.3 1.1 12 11-22 89-100 (111)
231 1wxq_A GTP-binding protein; st 25.9 4.3 0.00015 23.8 -2.2 19 9-27 243-261 (397)
232 2o4t_A BH3976 protein; LEFT-ha 25.7 6.7 0.00023 18.8 -1.2 17 11-27 45-61 (100)
233 2lju_A Putative oxidoreductase 25.6 25 0.00087 17.1 0.8 14 2-15 73-86 (108)
234 1qwg_A PSL synthase;, (2R)-pho 25.5 96 0.0033 17.4 4.3 35 3-37 92-126 (251)
235 1zx3_A Hypothetical protein NE 25.3 51 0.0018 15.5 1.8 18 16-33 64-81 (122)
236 4fn5_A EF-G 1, elongation fact 25.0 59 0.002 20.6 2.5 26 10-35 265-290 (709)
237 2jya_A AGR_C_3324P, uncharacte 25.0 27 0.00092 16.9 0.9 17 2-18 65-81 (106)
238 3cue_C Transport protein parti 24.8 79 0.0027 16.1 3.3 29 9-37 85-113 (159)
239 2o3l_A Hypothetical protein; s 24.2 4.9 0.00017 18.7 -1.8 17 11-27 48-64 (85)
240 2izx_A CAMP-dependent protein 23.3 44 0.0015 12.7 3.0 18 21-38 5-22 (41)
241 2fs1_A PSD-1; solution structu 22.6 51 0.0017 14.1 1.4 17 16-32 35-51 (56)
242 2hh6_A BH3980 protein; 1017660 21.7 9.1 0.00031 18.8 -1.2 17 11-27 64-80 (113)
243 1p94_A Plasmid partition prote 21.3 68 0.0023 14.4 1.8 22 16-37 53-74 (76)
244 2kyg_A CAMP-dependent protein 21.0 57 0.002 13.2 3.0 19 20-38 12-30 (50)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.66 E-value=3.3e-17 Score=88.59 Aligned_cols=38 Identities=37% Similarity=0.403 Sum_probs=32.0
Q ss_pred CHHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 1 MQAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 1 ~~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+++||+++++.|||||||+|.||+++|..|++.|....
T Consensus 141 ~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 141 GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp HHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred HhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 35799999999999999999999999999999987543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.26 E-value=4e-12 Score=67.28 Aligned_cols=37 Identities=62% Similarity=0.848 Sum_probs=32.8
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
..|++.++++|+++||++|.||+++|..|++.+.+..
T Consensus 137 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999987653
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.08 E-value=2.1e-11 Score=64.35 Aligned_cols=36 Identities=53% Similarity=0.671 Sum_probs=30.8
Q ss_pred HHHH-HhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 3 AFAD-ELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 3 ~~a~-~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
.++. ..+++|+++||++|.||+++|..|++.+++..
T Consensus 141 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp HHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 4566 45789999999999999999999999988653
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=61.14 Aligned_cols=36 Identities=31% Similarity=0.559 Sum_probs=32.5
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
..+++.++++||++||++|.||+++|..|++.+...
T Consensus 143 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 143 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 457788899999999999999999999999999764
No 5
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=6.6e-10 Score=59.76 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=32.1
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+.++..++++|||||||+|.||+++|..|++.+...
T Consensus 169 ~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 169 RACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 457788899999999999999999999999998654
No 6
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.94 E-value=1.4e-09 Score=57.27 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=32.1
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
..++..++++|+|||||+|.||+++|..|++.+....
T Consensus 138 ~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 138 RAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 3567778889999999999999999999999986543
No 7
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.87 E-value=6.5e-10 Score=58.20 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=30.6
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
..++..++++|+++||++|.||+++|..|++.+.+
T Consensus 137 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 137 QAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 45778889999999999999999999999887654
No 8
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.8e-09 Score=57.87 Aligned_cols=36 Identities=39% Similarity=0.503 Sum_probs=31.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
..|++.++++|+++||++|.||+++|..|++.+++.
T Consensus 142 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 142 KTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 457888889999999999999999999999998754
No 9
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.85 E-value=3.7e-09 Score=55.28 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=32.4
Q ss_pred HHHHHHhC-CCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELG-IPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~-~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+++++.++ +.|+++||++|.||+++|..|++.+++.
T Consensus 145 ~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 145 RKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 46788886 8999999999999999999999998865
No 10
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.85 E-value=4.6e-09 Score=53.81 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=32.7
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+.++..++++|+++||++|.||+++|..|++.+....
T Consensus 135 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 135 RACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 3577888999999999999999999999999987654
No 11
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.83 E-value=4.3e-09 Score=53.73 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=32.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+.+++.++++|+++||++|.||+++|..|++.+..+
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 133 RHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 457888999999999999999999999999988653
No 12
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.82 E-value=5.8e-09 Score=54.55 Aligned_cols=37 Identities=46% Similarity=0.672 Sum_probs=33.4
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+.+++.++++||++||++|.||+++|..|++.+.+..
T Consensus 152 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 152 QLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4578889999999999999999999999999998754
No 13
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.80 E-value=4.2e-09 Score=55.56 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=32.1
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
++|++.++++|+|+||++|.||+++|..|++.+...
T Consensus 154 ~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 154 RHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 467888889999999999999999999999988643
No 14
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.79 E-value=8.2e-09 Score=53.45 Aligned_cols=37 Identities=49% Similarity=0.721 Sum_probs=33.1
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
..+++.++++|+++||++|.||+++|..|++.+....
T Consensus 132 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp HHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 4678888999999999999999999999999987653
No 15
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.79 E-value=6.7e-09 Score=52.88 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=32.1
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+.++..++++|+++||++|.||+++|..|++.+.++
T Consensus 130 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 130 RACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 467888899999999999999999999999988754
No 16
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.78 E-value=5.2e-09 Score=53.74 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=29.7
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
+++++.++++|+++||++|.||+++|..|++.+
T Consensus 131 ~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 131 DKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred HHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467888899999999999999999999998764
No 17
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.77 E-value=9.8e-09 Score=53.12 Aligned_cols=37 Identities=57% Similarity=0.794 Sum_probs=30.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+++++.++++|+++||++|.||+++|..|++.+.+..
T Consensus 137 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173 (183)
T ss_dssp HHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 4678888999999999999999999999999998654
No 18
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.77 E-value=1.2e-08 Score=53.32 Aligned_cols=37 Identities=57% Similarity=0.779 Sum_probs=33.3
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+.+++.+++.|+++||++|.||+++|..|++.++++.
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 150 EAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999998754
No 19
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.77 E-value=7.3e-09 Score=54.24 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=32.3
Q ss_pred HHHHHHhCCC-eEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIP-FLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~-~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+++++.+++. |+++||++|.||+++|..|++.+++.
T Consensus 153 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 153 DDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 4678889988 99999999999999999999998754
No 20
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76 E-value=1.6e-08 Score=53.71 Aligned_cols=37 Identities=35% Similarity=0.545 Sum_probs=33.1
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+.+++..+++|+++||++|.||+++|..|++.+++..
T Consensus 155 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 155 EEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp HHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999998754
No 21
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.76 E-value=1.2e-08 Score=52.84 Aligned_cols=35 Identities=34% Similarity=0.650 Sum_probs=31.9
Q ss_pred HHHHHHhCCCeEEcccC-CCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAK-DAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAk-t~~~v~~~F~~l~~~i~~ 36 (66)
+.+++.++++|+++||+ +|.||+++|..|++.+.+
T Consensus 147 ~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 147 KEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 46888899999999999 999999999999998865
No 22
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.76 E-value=8.8e-09 Score=53.10 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=31.8
Q ss_pred HHHHHHh-CCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~-~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+++++.+ +++|+++||++|.||+++|..|++.+++..
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 134 RALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 4567776 689999999999999999999999987653
No 23
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.76 E-value=1.4e-08 Score=52.95 Aligned_cols=38 Identities=76% Similarity=1.127 Sum_probs=33.6
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 39 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~~ 39 (66)
+.+++.++++|+++||++|.||+++|..|++.+.+...
T Consensus 145 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 145 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 46788889999999999999999999999999987643
No 24
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=1.5e-08 Score=52.91 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=30.4
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.+|++.+++ +|+++||++|.||+++|..|++.++
T Consensus 158 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 158 QKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 457888887 8999999999999999999998876
No 25
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.74 E-value=1e-08 Score=53.34 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=33.0
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+++++.+++ +|+++||++|.||+++|..|++.+++..
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 457778888 9999999999999999999999998764
No 26
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.74 E-value=1.7e-08 Score=52.97 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=32.3
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
..+++.++. +|+++||++|.||+++|..|++.+++..
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 457778886 8999999999999999999999998654
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.73 E-value=1.8e-08 Score=51.31 Aligned_cols=36 Identities=53% Similarity=0.808 Sum_probs=32.5
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+.+++.++++|+++||++|.||+++|..|++.+.++
T Consensus 131 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999998764
No 28
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.73 E-value=1.9e-08 Score=53.18 Aligned_cols=37 Identities=46% Similarity=0.573 Sum_probs=33.0
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+++++.+++ +|+++||++|.||+++|..|++.+++..
T Consensus 158 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 158 QSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 467888898 8999999999999999999999998754
No 29
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.73 E-value=5e-09 Score=55.97 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=32.1
Q ss_pred HHHHHHhCC-CeEEcccCCCCC-HHHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAIN-VEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~-v~~~F~~l~~~i~~~ 37 (66)
..+++.+++ +|+||||++|.| |+++|..|++.++..
T Consensus 167 ~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 167 CAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 468889998 899999999998 999999999998754
No 30
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.73 E-value=2.1e-08 Score=52.30 Aligned_cols=37 Identities=46% Similarity=0.697 Sum_probs=33.1
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+++++.++++|+++||++|.||+++|..|++.+.++.
T Consensus 151 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 151 RRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4678888999999999999999999999999987653
No 31
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.73 E-value=9.7e-09 Score=52.70 Aligned_cols=35 Identities=51% Similarity=0.687 Sum_probs=30.7
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++++.++++|+++||++|.||+++|..|++.+++
T Consensus 144 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 144 KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 45778889999999999999999999999988754
No 32
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.72 E-value=2.2e-08 Score=51.87 Aligned_cols=38 Identities=45% Similarity=0.531 Sum_probs=33.6
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 39 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~~ 39 (66)
..+++.++++|+++||++|.||+++|..|++.+++...
T Consensus 139 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 139 SRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 45778889999999999999999999999999987643
No 33
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.71 E-value=8.8e-09 Score=54.21 Aligned_cols=34 Identities=44% Similarity=0.549 Sum_probs=30.7
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+.+++.++++|+++||++|.||+++|..|++.+.
T Consensus 163 ~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 163 EKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 4577888999999999999999999999998875
No 34
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.71 E-value=2.4e-08 Score=52.66 Aligned_cols=38 Identities=47% Similarity=0.548 Sum_probs=33.5
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKMG 39 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~~ 39 (66)
..+++.++++|+++||++|.||+++|..|++.+++...
T Consensus 154 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 154 SRFAQENELMFLETSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 45778889999999999999999999999999987543
No 35
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.71 E-value=2.4e-08 Score=52.39 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEcccCCCC-CHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAI-NVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~-~v~~~F~~l~~~i~~~~ 38 (66)
+.+++.++++|+++||++|. ||+++|..|++.+++..
T Consensus 156 ~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 156 EKLATELACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 46788889999999999999 99999999999998654
No 36
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.71 E-value=5.8e-09 Score=53.91 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=32.8
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+.+++.++++|+++||++|.||+++|..|++.+....
T Consensus 135 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 135 KALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 4688889999999999999999999999999987643
No 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.70 E-value=2.2e-08 Score=52.25 Aligned_cols=37 Identities=51% Similarity=0.622 Sum_probs=32.9
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+.+++.++++|+++||++|.||+++|..|++.++++.
T Consensus 154 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 154 RMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 4577788899999999999999999999999998754
No 38
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.70 E-value=2.4e-08 Score=51.99 Aligned_cols=37 Identities=35% Similarity=0.575 Sum_probs=33.1
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+++++.++++|+++||++|.||+++|..|++.++++.
T Consensus 170 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 170 QKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 4678888999999999999999999999999988654
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.70 E-value=2.8e-08 Score=51.06 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=32.7
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+.++..+++.|+++||++|.||+++|..|++.+.+..
T Consensus 138 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 138 SAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 4577788899999999999999999999999998654
No 40
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.70 E-value=1.4e-08 Score=52.34 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.1
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.++++.++. +|+++||++|.||+++|..|++.++
T Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 146 EELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457888886 8999999999999999999998774
No 41
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.70 E-value=7.7e-09 Score=54.10 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=31.0
Q ss_pred HHHHHHhCCCeEEccc-CCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSA-KDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~~~~etSA-kt~~~v~~~F~~l~~~i~ 35 (66)
+++++.++++|+++|| ++|.||+++|..|++.+.
T Consensus 151 ~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 4688889999999999 899999999999998875
No 42
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.69 E-value=1.9e-08 Score=53.58 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=32.0
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.++++.+++ +|+++||++|.||+++|..|++.+++.
T Consensus 174 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 467788887 899999999999999999999999864
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.69 E-value=1.3e-08 Score=52.28 Aligned_cols=35 Identities=31% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+.+++.++++|+++||++|.||+++|..|++.+++
T Consensus 139 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 139 LRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 45788889999999999999999999999998864
No 44
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.69 E-value=1.5e-08 Score=51.64 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=30.8
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++++.++++|+++||++|.||+++|..|++.++
T Consensus 135 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 135 ESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 4578888999999999999999999999998876
No 45
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.68 E-value=4e-08 Score=50.47 Aligned_cols=37 Identities=35% Similarity=0.563 Sum_probs=32.9
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
..++..++++|+++||++|.||+++|..|++.+.+..
T Consensus 137 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 137 YKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4577888999999999999999999999999988654
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.67 E-value=3.4e-08 Score=50.95 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=32.7
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
.++++.++++|+++||++|.||+++|..|++.+.+..
T Consensus 147 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 147 KNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 4577888999999999999999999999999987653
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.67 E-value=2.2e-08 Score=50.79 Aligned_cols=35 Identities=34% Similarity=0.568 Sum_probs=31.0
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
..+++.++++|+++||++|.||+++|..|++.+.+
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 133 KNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 45777889999999999999999999999988753
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.65 E-value=1.2e-08 Score=53.78 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.9
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+.+++.++++|+++||++|.||+++|..|++.+.+.
T Consensus 153 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 153 KKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 467888999999999999999999999999999864
No 49
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.65 E-value=5.7e-08 Score=50.32 Aligned_cols=37 Identities=35% Similarity=0.609 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+++++.++++|+++||++|.||+++|..|++.+.++.
T Consensus 151 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 151 RELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4577888999999999999999999999999988654
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.64 E-value=3.6e-08 Score=50.72 Aligned_cols=35 Identities=49% Similarity=0.827 Sum_probs=31.4
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+.+++.++++|+++||++|.||+++|..|++.+.+
T Consensus 140 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 140 EKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999998864
No 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.64 E-value=5.3e-08 Score=51.70 Aligned_cols=37 Identities=46% Similarity=0.651 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
++|++.++++|+++||++|.||+++|..|++.+.+..
T Consensus 165 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 165 RELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp HHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578888999999999999999999999999988653
No 52
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.62 E-value=4.6e-08 Score=51.76 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=31.6
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.++++.+++ +|+++||++|.||+++|..|++.+++.
T Consensus 145 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 145 EELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 457888885 899999999999999999999998753
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.62 E-value=3.8e-08 Score=51.74 Aligned_cols=37 Identities=49% Similarity=0.703 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+.+++.++++||++||++|.||+++|..|++.+.+..
T Consensus 137 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 137 RQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp HHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999987653
No 54
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.61 E-value=3.7e-08 Score=50.83 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=30.5
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
..+++.++. +|+++||++|.||+++|..|++.+++
T Consensus 145 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 145 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 347778886 89999999999999999999988863
No 55
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.60 E-value=2.7e-08 Score=50.56 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=31.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++++.++++|+++||++|.||+++|..|++.+++
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 133 EGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 45778889999999999999999999999988763
No 56
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.60 E-value=8.8e-08 Score=49.80 Aligned_cols=37 Identities=46% Similarity=0.683 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+++++.++++++++||++|.||+++|..|++.+.+..
T Consensus 149 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 149 HELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999987653
No 57
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.59 E-value=5.6e-08 Score=50.56 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=32.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
..+++.++++|+++||++|.||+++|..|++.+.+.
T Consensus 144 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 144 LKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 457788899999999999999999999999998754
No 58
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.58 E-value=5.8e-08 Score=50.86 Aligned_cols=36 Identities=44% Similarity=0.769 Sum_probs=30.6
Q ss_pred HHHHHHh-CCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~-~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+++++.+ ++.|+++||++|.||+++|..|++.++++
T Consensus 155 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 155 EKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3566664 68899999999999999999999988753
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.58 E-value=3.4e-08 Score=50.03 Aligned_cols=35 Identities=37% Similarity=0.618 Sum_probs=30.9
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+.+++.++++|+++||++|.||+++|..|++.+.+
T Consensus 132 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 132 RALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 45778889999999999999999999999988753
No 60
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.58 E-value=9.6e-08 Score=49.04 Aligned_cols=37 Identities=41% Similarity=0.457 Sum_probs=31.0
Q ss_pred HHHHH-HhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFAD-ELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~-~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
.++++ ..+.+|+++||++|.||+++|..|++.++++.
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 143 QELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 34666 35689999999999999999999999988653
No 61
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.58 E-value=7.1e-08 Score=50.83 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=29.8
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.++++.++. +|+++||++|.||+++|..|++.++
T Consensus 165 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 165 RDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 356777787 7999999999999999999998876
No 62
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.57 E-value=1.9e-08 Score=52.30 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.2
Q ss_pred HHHHHHhC-CCeEEcccC-CCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELG-IPFLETSAK-DAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~-~~~~etSAk-t~~~v~~~F~~l~~~i~~ 36 (66)
.+|++.++ .+|+|+||| +|.||+++|..+++.+++
T Consensus 147 ~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 147 ANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 45788887 789999999 689999999999998864
No 63
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.56 E-value=7.5e-08 Score=48.59 Aligned_cols=34 Identities=50% Similarity=0.751 Sum_probs=30.8
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++++.++++++++||++|.||+++|..|++.+.
T Consensus 131 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 131 QDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 4678888999999999999999999999998875
No 64
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.56 E-value=9e-08 Score=50.65 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=30.6
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
..++..++. .|+++||++|.||+++|..|++.++.
T Consensus 165 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 165 RAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 356777776 79999999999999999999998874
No 65
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.55 E-value=4.3e-08 Score=49.83 Aligned_cols=33 Identities=39% Similarity=0.718 Sum_probs=29.1
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
.+++..++++|+++||++|.||+++|..|++.+
T Consensus 135 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 135 QSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 457778889999999999999999999998765
No 66
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.55 E-value=7.7e-08 Score=49.35 Aligned_cols=35 Identities=40% Similarity=0.504 Sum_probs=29.9
Q ss_pred HHHHH-HhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFAD-ELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~-~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
.++++ ..+++|+++||++|.||+++|..|++.+++
T Consensus 139 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 139 QAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 34666 456899999999999999999999998875
No 67
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.55 E-value=1e-07 Score=50.26 Aligned_cols=37 Identities=51% Similarity=0.809 Sum_probs=32.9
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+.+++.++++|+++||++|.||+++|..|++.+.+..
T Consensus 148 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 148 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999887654
No 68
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.54 E-value=3.2e-08 Score=50.94 Aligned_cols=35 Identities=43% Similarity=0.656 Sum_probs=30.3
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++++.++++|+++||++|.||+++|..|++.+.+
T Consensus 141 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 141 QTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45778889999999999999999999999887754
No 69
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.54 E-value=3.5e-08 Score=52.49 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.4
Q ss_pred HHHHHHhC-CCeEEcccC-CCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELG-IPFLETSAK-DAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~-~~~~etSAk-t~~~v~~~F~~l~~~i~~ 36 (66)
++|++.++ ..|+|+||| +|.||+++|..|++.+++
T Consensus 168 ~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 168 ANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 46788887 689999999 689999999999998875
No 70
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.54 E-value=9.7e-08 Score=48.43 Aligned_cols=34 Identities=38% Similarity=0.584 Sum_probs=29.3
Q ss_pred HHHHHHh-CCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADEL-GIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~-~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
..+++.+ +.+|+++||++|.||+++|..|++.+.
T Consensus 132 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred HHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 3567777 689999999999999999999988763
No 71
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.53 E-value=1.1e-07 Score=49.18 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.7
Q ss_pred HHHHHHhCCC-------eEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIP-------FLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~-------~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+++++.++++ ++++||++|.||+++|..|++.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 143 NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 4577778765 59999999999999999999988764
No 72
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.52 E-value=7.5e-08 Score=48.98 Aligned_cols=33 Identities=39% Similarity=0.686 Sum_probs=29.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
..+++.++++|+++||++|.||+++|..|++.+
T Consensus 135 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 135 KDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 457778889999999999999999999998765
No 73
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.52 E-value=4.6e-08 Score=49.72 Aligned_cols=33 Identities=42% Similarity=0.648 Sum_probs=29.0
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
+++++.++++|+++||++|.||+++|..|++.+
T Consensus 135 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 457778899999999999999999999987654
No 74
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.50 E-value=1.3e-07 Score=48.98 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=31.4
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++++.++++|+++||++|.||+++|..+++.+..
T Consensus 135 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 135 DKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp HHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 46788889999999999999999999999988754
No 75
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.50 E-value=1.9e-07 Score=50.16 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=30.0
Q ss_pred HHHHHhC--CCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 3 AFADELG--IPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 3 ~~a~~~~--~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.++...+ ++|+++||++|.||+++|..|++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 170 QILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp HHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 4556666 7899999999999999999999988754
No 76
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.50 E-value=1.3e-07 Score=49.30 Aligned_cols=33 Identities=6% Similarity=0.147 Sum_probs=28.8
Q ss_pred HHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 6 DELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 6 ~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
+..++.||++||++|.||+++|..|++.+.+..
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 445678999999999999999999999998754
No 77
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.49 E-value=7.3e-08 Score=50.99 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=28.0
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
..+++.++. +|+++||++|.||+++|..|++.+
T Consensus 170 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 170 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 357778875 499999999999999999998754
No 78
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.48 E-value=1e-07 Score=50.03 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=26.4
Q ss_pred HHHHHHhCCCeEEcccCC-CCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKD-AINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt-~~~v~~~F~~l~~~i~~~ 37 (66)
.++++.++++|+++||++ |.||+++|..|++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 157 QDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp HHHHHHTTCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 467888899999999999 999999999999988754
No 79
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=5e-08 Score=51.06 Aligned_cols=35 Identities=37% Similarity=0.617 Sum_probs=30.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++++.++++|+++||++|.||+++|..|++.+.+
T Consensus 152 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 152 KEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp HHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 45778888999999999999999999999887643
No 80
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.47 E-value=3.4e-08 Score=51.90 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=27.0
Q ss_pred HHHH----HhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 3 AFAD----ELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 3 ~~a~----~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
.+++ .+++.|+||||++ .||+++|..|++.+
T Consensus 161 ~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 161 DLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 4566 6678999999999 99999999999875
No 81
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.47 E-value=1.9e-07 Score=52.18 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=30.7
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
..|++.+++ +|+++||++|.||+++|..|++.++.
T Consensus 295 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 357778886 89999999999999999999998863
No 82
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.46 E-value=1.2e-07 Score=49.36 Aligned_cols=34 Identities=47% Similarity=0.706 Sum_probs=27.6
Q ss_pred HHHHHHhCCCeEEcccCCC---CCHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDA---INVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~---~~v~~~F~~l~~~i~ 35 (66)
+.|++.++++|+++||++| .||+++|..|++.+.
T Consensus 151 ~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 151 QKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 4678888999999999999 999999999988775
No 83
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.83 E-value=2.2e-08 Score=52.80 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=28.6
Q ss_pred HHHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGI-PFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.++++.+++ +|+++||++|.||+++|..|++.++
T Consensus 170 ~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 170 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 346677776 8999999999999999999987653
No 84
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=1.1e-07 Score=48.31 Aligned_cols=33 Identities=33% Similarity=0.339 Sum_probs=28.8
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
+.++..++++|+++||++|.||+++|..|++.+
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 133 EALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 456778889999999999999999999988754
No 85
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.44 E-value=2.3e-07 Score=50.89 Aligned_cols=34 Identities=35% Similarity=0.477 Sum_probs=28.7
Q ss_pred HHHHHH-hCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADE-LGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~-~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++++. .+++|+|+||++|.||+++|..|++.+.
T Consensus 220 ~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 220 HTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356665 4789999999999999999999988763
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.44 E-value=5e-08 Score=49.50 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=23.6
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++|+++||++|.||+++|..|++.+.+
T Consensus 135 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 135 NWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred cEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 3469999999999999999999988754
No 87
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.43 E-value=1.6e-07 Score=47.44 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHhCC-CeEEcccCCCCCHHHHHHHHHHHH
Q 035388 3 AFADELGI-PFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 3 ~~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
+++ .+++ +|+++||++|.||+++|..|++.+
T Consensus 129 ~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 129 PLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp GGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 445 5676 799999999999999999998754
No 88
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.42 E-value=9.3e-08 Score=48.99 Aligned_cols=34 Identities=41% Similarity=0.528 Sum_probs=29.6
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+.+++.++++|+++||++|.||+++|..|++.+.
T Consensus 143 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 143 ERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 4567788999999999999999999999987654
No 89
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.41 E-value=8.2e-08 Score=51.00 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=31.2
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
.++..++++||++||++|.||+++|..|++.+....
T Consensus 142 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 142 EVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp HHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred HHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 456667889999999999999999999999987643
No 90
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.40 E-value=1.1e-07 Score=50.72 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=31.9
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.+++.+++.|+++||++|.||+++|..|++.++..
T Consensus 142 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 142 VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp CHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 47788899999999999999999999999999864
No 91
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.40 E-value=3.1e-08 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCCeEEcccCCC------CCHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDA------INVEQAFLTMAGE 33 (66)
Q Consensus 9 ~~~~~etSAkt~------~~v~~~F~~l~~~ 33 (66)
++.|+|||||+| .||+++|..|++.
T Consensus 183 ~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 183 KVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 677999999999 9999999999875
No 92
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.39 E-value=1.2e-07 Score=48.31 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=25.5
Q ss_pred hCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 8 LGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 8 ~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
.+++|+++||++|.||+++|..|++.+.+
T Consensus 141 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 141 RKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 35579999999999999999999988753
No 93
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.38 E-value=2.2e-08 Score=52.71 Aligned_cols=35 Identities=77% Similarity=1.094 Sum_probs=27.7
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+.+++.++++|+++||++|.||+++|..|++.+.+
T Consensus 162 ~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 162 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999877643
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.34 E-value=8.4e-08 Score=49.89 Aligned_cols=28 Identities=11% Similarity=0.021 Sum_probs=23.6
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++|++|||++|.||+++|..|++.+.+
T Consensus 151 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 151 VWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred ceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 4569999999999999999999887754
No 95
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.29 E-value=1.5e-06 Score=47.88 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=30.4
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
..+++.++++++++||++|.||+++|..+++.+.
T Consensus 133 ~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 133 YELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 4678889999999999999999999999988653
No 96
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.29 E-value=6.1e-07 Score=46.51 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=26.6
Q ss_pred HHHHhC-CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 4 FADELG-IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 4 ~a~~~~-~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
++...+ ++|+++||++|.||+++|..|++.+.
T Consensus 161 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 161 VFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp HHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 444433 78999999999999999999988774
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.29 E-value=1.2e-07 Score=49.73 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=23.8
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++|+++||++|.||+++|..|++.+.
T Consensus 164 ~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 164 TWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 346899999999999999999988764
No 98
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.28 E-value=2.1e-08 Score=57.33 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=27.9
Q ss_pred HHHHHH----hCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADE----LGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~----~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
++||+. +++.|||||||+ .||+++|..+++.++.
T Consensus 137 ~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 137 EELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp HTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred HHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 345664 678999999998 5999999999998754
No 99
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.27 E-value=1.6e-06 Score=45.50 Aligned_cols=37 Identities=43% Similarity=0.627 Sum_probs=32.7
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
..++...++.|++|||+++.|++++|..|++.+.+..
T Consensus 134 ~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 134 RAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999999987654
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.27 E-value=4.1e-07 Score=47.27 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=25.7
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+++|+++||++|.||+++|..|++.+.+.
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 157 TWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 45799999999999999999999988754
No 101
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.23 E-value=1.8e-06 Score=48.00 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=29.4
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
..+++.++++++++||++|.||+++|..+++.+
T Consensus 130 ~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 130 DKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred HHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 467888999999999999999999999987754
No 102
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.21 E-value=2.9e-07 Score=51.79 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=22.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.++++.++++||++||++| ||+++|..+++.+...
T Consensus 181 ~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 181 LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 4577888999999999999 9999999999998754
No 103
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.19 E-value=1.5e-06 Score=45.56 Aligned_cols=33 Identities=55% Similarity=0.771 Sum_probs=29.5
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
..++.+.++.|++|||+++.|++++|..|++.+
T Consensus 158 ~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 467888889999999999999999999998875
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.18 E-value=5.7e-07 Score=46.10 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=25.1
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
++|+++||++|.||+++|..|++.+...
T Consensus 145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 145 TIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 5799999999999999999999887654
No 105
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.18 E-value=5.4e-07 Score=46.65 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=26.0
Q ss_pred hCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 8 LGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 8 ~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.+++|+++||++|.||+++|..|++.+.+.
T Consensus 152 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 152 HHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 345799999999999999999999988643
No 106
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.17 E-value=8.7e-07 Score=46.07 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=27.9
Q ss_pred HHHHHhCCC----eEEcccCCCC-CHHHHHHHHHHHHHH
Q 035388 3 AFADELGIP----FLETSAKDAI-NVEQAFLTMAGEIKK 36 (66)
Q Consensus 3 ~~a~~~~~~----~~etSAkt~~-~v~~~F~~l~~~i~~ 36 (66)
.|++.++++ |+|+||++|. +++++|..|.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 455556776 9999999997 999999999887764
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.16 E-value=1.6e-06 Score=45.14 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=24.1
Q ss_pred hCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 8 LGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 8 ~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
.+.+|+++||++|.||+++|..|++.+
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998765
No 108
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.15 E-value=2.8e-07 Score=48.01 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.7
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
++.|+++||++|.||+++|..|++.+.+
T Consensus 158 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 158 EICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999887643
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.15 E-value=1.1e-06 Score=45.35 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=24.1
Q ss_pred hCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 8 LGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 8 ~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.+.+|+++||++|.||+++|..|++.+.
T Consensus 138 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 138 NGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred cCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999987753
No 110
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.13 E-value=2e-06 Score=44.29 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=25.1
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.+|+++||++|.||+++|..|++.+.++
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 154 WSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999988754
No 111
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.13 E-value=4.2e-07 Score=47.06 Aligned_cols=25 Identities=12% Similarity=-0.054 Sum_probs=22.1
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~ 33 (66)
++.|+++||++|.||+++|..|++.
T Consensus 156 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 156 QWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred ceEEEEccCCCCcCHHHHHHHHHhh
Confidence 4579999999999999999998754
No 112
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.10 E-value=7.4e-07 Score=46.65 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=22.0
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~ 33 (66)
+++|+++||++|.||+++|..|++.
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHhh
Confidence 4579999999999999999998753
No 113
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.10 E-value=2.3e-06 Score=44.40 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=25.2
Q ss_pred hCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 8 LGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 8 ~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
.++.|+++||++|.||+++|..|++.+..
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 150 HQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 34579999999999999999999988753
No 114
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.09 E-value=8.2e-07 Score=46.78 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=22.0
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~ 33 (66)
+..|++|||++|.||+++|..|++.
T Consensus 172 ~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 172 PLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999998754
No 115
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.07 E-value=1.3e-06 Score=50.23 Aligned_cols=30 Identities=30% Similarity=0.164 Sum_probs=27.0
Q ss_pred hCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 8 LGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 8 ~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.++.|++|||++|.||+++|..+++.|++.
T Consensus 316 ~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 316 KEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 457799999999999999999999999865
No 116
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.06 E-value=9.1e-06 Score=43.30 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=27.2
Q ss_pred HHHHh--CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 4 FADEL--GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 4 ~a~~~--~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++.+ +.+++++||++|.||+++|..|++.+..
T Consensus 190 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 190 DAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 44443 4789999999999999999999887754
No 117
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.06 E-value=6e-07 Score=50.98 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=24.1
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
++|+++||++|.||+++|..|++.+.+
T Consensus 301 ~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 301 WYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 458999999999999999999988753
No 118
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.05 E-value=4.4e-06 Score=46.95 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=26.9
Q ss_pred HHHHHHhC--CCeEEcccCCCCCHHHHHHHHHHH
Q 035388 2 QAFADELG--IPFLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 2 ~~~a~~~~--~~~~etSAkt~~~v~~~F~~l~~~ 33 (66)
+++++.++ +.||+|||++|.||+++|..+...
T Consensus 137 ~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 137 RELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred HHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 35677777 899999999999999999887654
No 119
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.04 E-value=1.1e-05 Score=46.23 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=29.7
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+++...+++++++||++|.||+++|..|.+.+...
T Consensus 303 ~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 303 KFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp HHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 35556788999999999999999999999887543
No 120
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.99 E-value=3.3e-06 Score=43.91 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=23.8
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
++.|+++||++|.||+++|..|++.+.+
T Consensus 160 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 160 PWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 4679999999999999999999887643
No 121
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.98 E-value=3e-06 Score=48.82 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+.+++|||+++.||+++|..+++.|++.
T Consensus 319 ~~~~eTSA~d~~nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 319 FKIYRTTALDQKLVKKTFKLVDETLRRR 346 (354)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeecchhHHHHHHHHHHHHHHH
Confidence 3468999999999999999999998764
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.95 E-value=8.8e-06 Score=44.81 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=28.4
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~ 33 (66)
..+++.++++++++||++|.||+++|..|.+.
T Consensus 133 ~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 133 EKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35778889999999999999999999988765
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.92 E-value=1.8e-05 Score=43.67 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=30.8
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
..+++.+++++++|||++|.||+++|..+++.+..
T Consensus 132 ~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 132 KKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 45778889999999999999999999999887653
No 124
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.90 E-value=2.6e-06 Score=48.72 Aligned_cols=31 Identities=23% Similarity=0.108 Sum_probs=27.7
Q ss_pred HhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 7 ELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 7 ~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
..++.+++|||+++.||+++|..+++.|++.
T Consensus 289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 289 DKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 4557789999999999999999999999875
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.86 E-value=7.6e-06 Score=45.38 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
..+++.++++++++||++|.||+++|..|++.+.
T Consensus 135 ~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 135 DALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4577888999999999999999999998876543
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.83 E-value=2.3e-05 Score=46.20 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=25.8
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+++++++||++|.||+++|..+++.+...
T Consensus 342 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 342 YAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999877554
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.81 E-value=2.5e-05 Score=41.39 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=25.0
Q ss_pred hCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 8 LGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 8 ~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
.+.+++++||++|.||+++|..|.+.+..
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 34679999999999999999999988754
No 128
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.76 E-value=1.4e-05 Score=46.19 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=26.9
Q ss_pred hCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 8 LGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 8 ~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
.++.|++|||+++.||+++|..+++.|++..
T Consensus 325 ~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 325 RPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp -CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999998653
No 129
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.75 E-value=1.8e-05 Score=46.40 Aligned_cols=29 Identities=21% Similarity=0.045 Sum_probs=25.4
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
++.|++|||+++.||+++|..+++.|++.
T Consensus 358 ~~~~~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 358 YCYPHFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999888764
No 130
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.66 E-value=1.1e-05 Score=48.28 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=24.0
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++...+.+++++||++|.||+++|..|++.+..
T Consensus 175 ~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 175 ERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp HHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 3455667889999999999999999999988754
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.65 E-value=6.4e-05 Score=44.11 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+++++++||++|.||+++|..+++.+..
T Consensus 328 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 328 YSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999876654
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.65 E-value=3.5e-05 Score=45.17 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=26.0
Q ss_pred hCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 8 LGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 8 ~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.+++++++||++|.||+++|..+++.+...
T Consensus 321 ~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 321 DYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999998877643
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.63 E-value=5.7e-06 Score=48.67 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=29.1
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
++++.++++++++||++|.||+++|..|++.+.+
T Consensus 163 ~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 163 LYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp HSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4455678899999999999999999999988753
No 134
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.62 E-value=5.2e-05 Score=44.89 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=23.3
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
++|+++||++|.||+++|..|++.+...
T Consensus 458 ~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 458 WYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3499999999999999999999877543
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.61 E-value=5.6e-05 Score=42.53 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=25.0
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHH
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAG 32 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~ 32 (66)
++++.++++++++||++|.||+++|..+..
T Consensus 136 ~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 136 SIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred HHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 345567889999999999999999987654
No 136
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.57 E-value=9.8e-05 Score=41.57 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=27.6
Q ss_pred HHHHHhC--CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 3 AFADELG--IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 3 ~~a~~~~--~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.+++.++ ..++++||++|.||+++|..|++.+.
T Consensus 147 ~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 147 EIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp HHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 4555654 77999999999999999999988774
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.56 E-value=7.5e-05 Score=42.85 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=28.5
Q ss_pred HHHHHhC--CCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 3 AFADELG--IPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 3 ~~a~~~~--~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
++++.+. .+++++||+++.||+++|..|++.+.+
T Consensus 295 ~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 295 AFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp HHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred HHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 4556665 689999999999999999999988753
No 138
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.47 E-value=0.00024 Score=37.65 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=24.3
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+.+++++||++|.||+++|..|.+.+..
T Consensus 187 ~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 187 RAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999999887754
No 139
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.44 E-value=0.0002 Score=42.72 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.5
Q ss_pred HHHHhCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 4 FADELGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 4 ~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++....+++++|||+|.||+++|..|++.+.
T Consensus 366 l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 366 IADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 34432468999999999999999999998875
No 140
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.36 E-value=8.3e-05 Score=41.82 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=27.4
Q ss_pred HHHHHHhC---CCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 2 QAFADELG---IPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 2 ~~~a~~~~---~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
.++++.+| ++|++|||++ .+|.++|..+++.+
T Consensus 145 ~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 145 SETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 46778887 6899999999 89999999988764
No 141
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.29 E-value=0.00049 Score=37.33 Aligned_cols=31 Identities=19% Similarity=-0.023 Sum_probs=25.5
Q ss_pred HHHhC--CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 5 ADELG--IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 5 a~~~~--~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
++.++ .+++++||++|.||+++|..|.+.+.
T Consensus 224 ~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 224 MTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 34544 47999999999999999999987764
No 142
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.23 E-value=8.1e-05 Score=42.81 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=26.1
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
.+.+++|||+++.||+.+|..+++.|++
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999987
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.20 E-value=0.00056 Score=40.17 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=26.6
Q ss_pred HhCC-CeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 7 ELGI-PFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 7 ~~~~-~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.+++ .++++||++|.||+++|..+++.+.+.
T Consensus 136 ~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 136 SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 3465 689999999999999999999988753
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.18 E-value=0.00027 Score=42.28 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=25.0
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+.+++++||++|.||+++|..|.+.+..
T Consensus 378 ~~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 378 DRHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp STTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3689999999999999999999987664
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.11 E-value=0.00086 Score=39.50 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=28.2
Q ss_pred HHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 5 ADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 5 a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.+..+..++.+||+++.||+++|..|++.+...
T Consensus 294 l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 294 LAREGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp HHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHhcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 344567899999999999999999999988754
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.10 E-value=0.00061 Score=40.56 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=24.8
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+.+++++||++|.||+++|..|.+.+..
T Consensus 357 ~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 357 ITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4679999999999999999999988754
No 147
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.08 E-value=0.001 Score=38.48 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHhCC---CeEEcccCCCCCHHHHHHHHHHH
Q 035388 5 ADELGI---PFLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 5 a~~~~~---~~~etSAkt~~~v~~~F~~l~~~ 33 (66)
++..++ .++++||++|.||+++|..+.+.
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 556676 68999999999999999988654
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.06 E-value=0.001 Score=39.68 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=24.5
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+.+++++||++|.||+++|..|.+.+.
T Consensus 162 ~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 162 NSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 578999999999999999999988775
No 149
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.96 E-value=0.0007 Score=39.37 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.8
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++++++||++|.||+++|..|.+.+.
T Consensus 165 ~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 165 NVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 568999999999999999999887653
No 150
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.95 E-value=0.00067 Score=39.49 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=17.8
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++++++||++|.||+++|..|.+.+.
T Consensus 171 ~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 171 NAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TCCEEEC------CHHHHHHHHHHHSC
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 578999999999999999999887653
No 151
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.92 E-value=0.001 Score=38.07 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=24.7
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+.+++.+||++|.||+++|..|.+.+..
T Consensus 257 ~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 257 RPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999887654
No 152
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.92 E-value=0.00013 Score=41.98 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=20.1
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHHh
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
++++.++++||++||++|.+ ++.|..+++.+....
T Consensus 201 ~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 201 DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 34556788999999999999 999999999987654
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.84 E-value=0.0013 Score=38.34 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.7
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++++++||++|.||+++|..|.+.+.
T Consensus 173 ~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 173 NAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 578999999999999999998887653
No 154
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.68 E-value=0.0022 Score=39.40 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=26.9
Q ss_pred HHHHHhCC---CeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 3 AFADELGI---PFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 3 ~~a~~~~~---~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
++.+.+++ .++++||++|.||+++|..|++.+.
T Consensus 146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 45556665 3999999999999999999887764
No 155
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.62 E-value=0.00032 Score=41.32 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=12.4
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
+++..+++++|++||+++.+++++|..+...+
T Consensus 194 ~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 194 KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 46677899999999999999999998887765
No 156
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.58 E-value=0.0024 Score=39.27 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=26.4
Q ss_pred HHHHHhCC---CeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 3 AFADELGI---PFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 3 ~~a~~~~~---~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
++++.+++ .++++||++|.||+++|..|++.+.
T Consensus 148 el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 148 QIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 34455565 3899999999999999999887764
No 157
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.56 E-value=0.0031 Score=36.47 Aligned_cols=28 Identities=14% Similarity=-0.016 Sum_probs=24.2
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
..++.+||++|.|++++|..|.+.+...
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 3689999999999999999998877653
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.54 E-value=0.00092 Score=40.56 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=22.4
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
++|+++||++|.||+++|..|...+
T Consensus 142 ~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 142 VQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp EEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCchhHHHHHHHhh
Confidence 4689999999999999999988765
No 159
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.35 E-value=0.0028 Score=37.22 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.4
Q ss_pred hCC-CeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 8 LGI-PFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 8 ~~~-~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.++ .++++||++|.||+++|..+++.+.
T Consensus 136 lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 136 LGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp GSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred cCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 454 6899999999999999999988775
No 160
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.35 E-value=0.0063 Score=35.17 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=23.8
Q ss_pred HHHhCC---CeEEcccCCCCCHHHHHHHHHHH
Q 035388 5 ADELGI---PFLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 5 a~~~~~---~~~etSAkt~~~v~~~F~~l~~~ 33 (66)
++..++ .++.+||++|.||++++..+.+.
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 455666 58999999999999999888654
No 161
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.28 E-value=0.0048 Score=32.22 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=21.9
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
+.++.|||+++.|++++|..|.+.+
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CceEEEeecCCCCHHHHHHHHHHHH
Confidence 4578999999999999999887765
No 162
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.21 E-value=0.0044 Score=34.79 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=25.0
Q ss_pred HHHHhCC-CeEEcccCCCCCHHHHHHHHHHHH
Q 035388 4 FADELGI-PFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 4 ~a~~~~~-~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
+++.++. .++.+||++|.||+++|..+.+.+
T Consensus 142 l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 142 LASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp HHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred HHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 4445565 589999999999999999887654
No 163
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.09 E-value=0.0013 Score=35.76 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=26.8
Q ss_pred HHHHhCCC---e--EEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 4 FADELGIP---F--LETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 4 ~a~~~~~~---~--~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+++.++.. | +++||++|.||+++|..|.+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 45555533 3 7999999999999999999888653
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=95.98 E-value=0.0029 Score=38.26 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.2
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.++|.+||++|.||+++|..+++.+.
T Consensus 251 ~PV~~gSA~~~~GV~~Lld~i~~~~p 276 (528)
T 3tr5_A 251 TPIFFGSAINNFGVGELLDAFVKEAP 276 (528)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred eEEEeccccCCccHHHHHHHHHHhCC
Confidence 57899999999999999999988764
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=95.90 E-value=0.0014 Score=39.52 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.9
Q ss_pred CCeEEcccCCCCCHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAG 32 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~ 32 (66)
++|+++||++|.||+++|..|+.
T Consensus 141 ~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 141 SQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CEEEECCTTTCTTCTTHHHHTTT
T ss_pred ccEEEEeeeeccCcchhhhhhhh
Confidence 67999999999999999998864
No 166
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.90 E-value=0.0053 Score=38.01 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.8
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++|++||++|.||+++|..|++.+.
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 57999999999999999999998774
No 167
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.88 E-value=0.0021 Score=36.14 Aligned_cols=26 Identities=15% Similarity=-0.055 Sum_probs=22.5
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
..++++||++|.||+++|..|++.+.
T Consensus 147 ~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 147 AEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp SEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 45899999999999999999887653
No 168
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.79 E-value=0.0096 Score=33.97 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=23.3
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
..+++.+||++|.||++++..|.+.+.
T Consensus 234 ~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 234 QPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 345889999999999999999988764
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=95.63 E-value=0.015 Score=33.73 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=23.4
Q ss_pred CCeEE--cccCC---CCCHHHHHHHHHHHHH
Q 035388 10 IPFLE--TSAKD---AINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~e--tSAkt---~~~v~~~F~~l~~~i~ 35 (66)
+++++ +||++ |.||+++|..|.+.+.
T Consensus 149 ~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 149 WECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred eEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 57999 99999 9999999999988764
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.60 E-value=0.0016 Score=35.89 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.3
Q ss_pred CeEEcccCCCCCHHHHHHHHHHHH
Q 035388 11 PFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 11 ~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
+++++||++|.||+++|..|++..
T Consensus 228 ~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 228 GVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp ECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred EEECCChhhccccccHHHHHHHHH
Confidence 578999999999999999998754
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.51 E-value=0.013 Score=35.98 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=23.6
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
.+++.+||++|.||++++..|...+..
T Consensus 192 vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 192 VSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ceEEEEeccCCCCchhHHHHHHhhccc
Confidence 379999999999999999999877653
No 172
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.50 E-value=0.017 Score=33.18 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=22.3
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
..+++.+||++|.|+++++..|.+.+
T Consensus 252 ~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 252 KPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999887765
No 173
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=95.31 E-value=0.0073 Score=35.09 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=23.6
Q ss_pred HHHHhC-----CCeEEcccCCCCC----------HHHHHHHHHHHH
Q 035388 4 FADELG-----IPFLETSAKDAIN----------VEQAFLTMAGEI 34 (66)
Q Consensus 4 ~a~~~~-----~~~~etSAkt~~~----------v~~~F~~l~~~i 34 (66)
+++.++ ++|+++||++|.| |+++|..|.+.+
T Consensus 148 ~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 148 LLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 455555 5899999999876 888888776655
No 174
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=95.29 E-value=0.0019 Score=37.94 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=21.1
Q ss_pred HHHHHhC-----CCeEEcccCCCCCHHHHHHH
Q 035388 3 AFADELG-----IPFLETSAKDAINVEQAFLT 29 (66)
Q Consensus 3 ~~a~~~~-----~~~~etSAkt~~~v~~~F~~ 29 (66)
++++.++ ++++++||++|.||+++|..
T Consensus 186 ~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 186 KFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 3455566 67999999999999987654
No 175
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.98 E-value=0.03 Score=31.26 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=24.4
Q ss_pred HhCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 7 ELGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 7 ~~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
..+++++.+||+++.|+++++..+.+.+.
T Consensus 77 ~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 77 NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 44678999999999999999988776654
No 176
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=94.77 E-value=0.0042 Score=36.51 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=20.1
Q ss_pred HHHHHhC-----CCeEEcccCCCCCHHHHHH
Q 035388 3 AFADELG-----IPFLETSAKDAINVEQAFL 28 (66)
Q Consensus 3 ~~a~~~~-----~~~~etSAkt~~~v~~~F~ 28 (66)
++++.++ ++|+++||++|.||.++|.
T Consensus 175 ~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 175 KFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 3445554 5799999999999987765
No 177
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.62 E-value=0.0073 Score=33.28 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=14.2
Q ss_pred HHHhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 5 ADELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 5 a~~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
...+++.++++||+++.++++++..|.+.+
T Consensus 173 l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 173 IQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 345678999999999999999998887654
No 178
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=94.27 E-value=0.027 Score=33.26 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.8
Q ss_pred CCeEEcccCCCCCHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFL 28 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~ 28 (66)
++|+++||++|.||++++.
T Consensus 199 ~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 199 IHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eeEEEeeccCCcccccccc
Confidence 4699999999999999765
No 179
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.00 E-value=0.016 Score=33.68 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=12.0
Q ss_pred CCeEEcccCCCCC
Q 035388 10 IPFLETSAKDAIN 22 (66)
Q Consensus 10 ~~~~etSAkt~~~ 22 (66)
.+++++||++|.|
T Consensus 168 ~~~i~~SA~~g~~ 180 (405)
T 2c78_A 168 VPVIRGSALLALE 180 (405)
T ss_dssp SCEEECCHHHHHH
T ss_pred CCEEEccHHHhhh
Confidence 6799999999988
No 180
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.86 E-value=0.036 Score=32.74 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=21.8
Q ss_pred CeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 11 PFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 11 ~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
..+++||++|.||+++|..+.+.+.
T Consensus 160 ~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 160 EPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp SEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred ceEEeecccccchHHHHHHHHhhcc
Confidence 4689999999999999999987654
No 181
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=93.08 E-value=0.008 Score=35.72 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=16.3
Q ss_pred CCeEEcccCCCCCHHHHH
Q 035388 10 IPFLETSAKDAINVEQAF 27 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F 27 (66)
++|+++||++|.||+++|
T Consensus 226 ~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 226 VKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEECBTTTTBTTSSCC
T ss_pred ceEEeccccccccccccc
Confidence 569999999999999877
No 182
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.84 E-value=0.16 Score=29.04 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
..+++.+||+++.|+++++..|.+..
T Consensus 234 ~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 234 TPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34678899999999999998887654
No 183
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=92.71 E-value=0.077 Score=35.56 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=20.1
Q ss_pred CCeEEcccCCC--------CCHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDA--------INVEQAFLTMAGEI 34 (66)
Q Consensus 10 ~~~~etSAkt~--------~~v~~~F~~l~~~i 34 (66)
++++++||++| .||+++|..|.+.+
T Consensus 452 vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 452 TPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred eeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 46888888776644
No 184
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=92.30 E-value=0.057 Score=32.06 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=18.6
Q ss_pred HHHHhC-----CCeEEcccCCCCCHHHHH
Q 035388 4 FADELG-----IPFLETSAKDAINVEQAF 27 (66)
Q Consensus 4 ~a~~~~-----~~~~etSAkt~~~v~~~F 27 (66)
+++.++ ++|+++||++|.||+++.
T Consensus 175 ~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 175 FIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp HHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred HHHHcCCCccCceEEEeecccCcCccccc
Confidence 445554 689999999999998653
No 185
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=91.86 E-value=0.11 Score=31.04 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.2
Q ss_pred CCCeEEcccCCCCCHHHH
Q 035388 9 GIPFLETSAKDAINVEQA 26 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~ 26 (66)
+++|+++||++|.||+++
T Consensus 211 ~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 211 NINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GEEEEECCSSSCTTSSSS
T ss_pred cceEEEEeeecCCCcccc
Confidence 357899999999999853
No 186
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.99 E-value=0.011 Score=31.03 Aligned_cols=21 Identities=10% Similarity=-0.099 Sum_probs=9.1
Q ss_pred HHHHHhCCCeEEcccCCCCCH
Q 035388 3 AFADELGIPFLETSAKDAINV 23 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v 23 (66)
.|+...++.|+++||++|.+.
T Consensus 151 ~~~~~~~~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 151 KVIERRKKSLNEVERKINEED 171 (218)
T ss_dssp HHHHHHHHHHHC---------
T ss_pred HHHHHHhcccccccccccccc
Confidence 456667788999999998763
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=90.79 E-value=0.069 Score=32.81 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=13.3
Q ss_pred CeEEcccCCCCCHH
Q 035388 11 PFLETSAKDAINVE 24 (66)
Q Consensus 11 ~~~etSAkt~~~v~ 24 (66)
+|+.+||++|.||+
T Consensus 358 ~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 358 HFVPISAISGTNLI 371 (592)
T ss_dssp EEEEECSSSCSSSC
T ss_pred EEEEEecccCcccc
Confidence 69999999999998
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=89.85 E-value=0.31 Score=30.54 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCeEEcccC--------------CCCCHHHHHHHHHHHHHH
Q 035388 10 IPFLETSAK--------------DAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 10 ~~~~etSAk--------------t~~~v~~~F~~l~~~i~~ 36 (66)
.++|.+||+ ++.||+++|..|.+.+..
T Consensus 285 ~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 285 ERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 468999999 999999999999887643
No 189
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=89.45 E-value=0.088 Score=32.48 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=16.0
Q ss_pred CCeEEcccCCCCCHHHHH
Q 035388 10 IPFLETSAKDAINVEQAF 27 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F 27 (66)
++|+++||++|.||+++.
T Consensus 346 ~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 346 INWVPISGFSGEGVYKIE 363 (611)
T ss_dssp CEEEECCTTTCTTTSSCT
T ss_pred ccEEeeecccCCCccccC
Confidence 579999999999999774
No 190
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.06 E-value=0.4 Score=26.46 Aligned_cols=26 Identities=12% Similarity=-0.143 Sum_probs=20.8
Q ss_pred HHhCCCeEEcccCCCCCHHHHHHHHHH
Q 035388 6 DELGIPFLETSAKDAINVEQAFLTMAG 32 (66)
Q Consensus 6 ~~~~~~~~etSAkt~~~v~~~F~~l~~ 32 (66)
+..+.++ .+||+++.|+++++..+..
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 3456777 9999999999999876643
No 191
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=87.95 E-value=0.31 Score=29.62 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=22.6
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.|+|..||++|.||+.++..++..+.
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P 277 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAP 277 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCC
Confidence 57899999999999999988877664
No 192
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=87.86 E-value=0.43 Score=27.45 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.9
Q ss_pred eEEcccCCCCCHHHHHHHHHHHHH
Q 035388 12 FLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 12 ~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
...|||+||+|+.+.++=|+..+.
T Consensus 284 Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 284 VQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHSC
T ss_pred EEecccCCCcCHHHHHHHHHHHHH
Confidence 568999999999999998887763
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=87.75 E-value=0.029 Score=32.03 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.1
Q ss_pred CeEEcccCCCCCHHHHHHHHHHH
Q 035388 11 PFLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 11 ~~~etSAkt~~~v~~~F~~l~~~ 33 (66)
.++++||++|.||+++|..+.+.
T Consensus 233 ~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 233 GVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp ECCCCCHHHHHTTCCHHHHHHHH
T ss_pred EEEeCCcccccccccHHHHHHHH
Confidence 46789999999999999988764
No 194
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=87.39 E-value=0.22 Score=27.38 Aligned_cols=23 Identities=13% Similarity=0.097 Sum_probs=19.9
Q ss_pred eEEcccCCCCCHHHHHHHHHHHH
Q 035388 12 FLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 12 ~~etSAkt~~~v~~~F~~l~~~i 34 (66)
...|||+||+|+.+.++=|+..+
T Consensus 199 Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 199 VQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp EEEEETTTCTTHHHHHHHHTTTT
T ss_pred EEEeECCCCcCHHHHHHHHHHHH
Confidence 46899999999999998887655
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=86.73 E-value=0.1 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.044 Sum_probs=25.4
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
+++++.++.+++.+||++..+|.+++..-....+
T Consensus 228 ~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l 261 (368)
T 2dby_A 228 RRKALEEGAEVVVVSARLEAELAELSGEEARELL 261 (368)
T ss_dssp HHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCeEEEeechhHHHHHHhchHHHHHHH
Confidence 3577778899999999998888877655443333
No 196
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=85.20 E-value=1.8 Score=23.00 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHHHhCCCeEEcccCCC-----CCHHHHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDA-----INVEQAFLTMAGEIKK 36 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~-----~~v~~~F~~l~~~i~~ 36 (66)
+++++..+..|+..+++++ .+|.++|..+.+.+.+
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 175 QDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 3466777877777766643 7899999988777754
No 197
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=82.15 E-value=1.2 Score=28.09 Aligned_cols=26 Identities=15% Similarity=-0.005 Sum_probs=23.3
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
++.|..||++|.||+.+++.++..+.
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lP 287 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLP 287 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCC
Confidence 67899999999999999999988764
No 198
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=82.02 E-value=0.9 Score=28.52 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.9
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
++.|..||++|.||+.++..++..+.
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 281 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYLP 281 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 57899999999999999998887764
No 199
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=79.21 E-value=0.12 Score=29.58 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=21.3
Q ss_pred HhCCCeEEcccCCCCCHHHHHHHHHHHH
Q 035388 7 ELGIPFLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 7 ~~~~~~~etSAkt~~~v~~~F~~l~~~i 34 (66)
.++++|+++|++++.+|++.|..+....
T Consensus 232 ~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 232 KLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp CCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred cccCCeEEEEECChHHhccCCCHHHHHH
Confidence 3567899999999999988776554433
No 200
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=75.66 E-value=4.3 Score=21.91 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=23.3
Q ss_pred HHHHHhCCCeEEcccCC-----CCCHHHHHHHHHHHHHHH
Q 035388 3 AFADELGIPFLETSAKD-----AINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt-----~~~v~~~F~~l~~~i~~~ 37 (66)
++.+..+..|+..+++. +.+|++++..|.+.+.+.
T Consensus 170 ~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 170 ELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 44556665555444333 689999999988777653
No 201
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=75.00 E-value=2.4 Score=26.65 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=22.9
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.|.|..||++|.||+.++..+++.+.
T Consensus 254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lP 279 (693)
T 2xex_A 254 YPVLCGTAFKNKGVQLMLDAVIDYLP 279 (693)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eeEEEeecccCcCHHHHHHHHHHHCC
Confidence 57899999999999999998888774
No 202
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=74.38 E-value=5.8 Score=23.11 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=19.6
Q ss_pred HhCCCeEEcccCCCCCHHHHHHHH
Q 035388 7 ELGIPFLETSAKDAINVEQAFLTM 30 (66)
Q Consensus 7 ~~~~~~~etSAkt~~~v~~~F~~l 30 (66)
..|++.+.+||+++.|++++-..+
T Consensus 190 ~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 190 NIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTCCEEECBTTTTBTHHHHHHHH
T ss_pred hCCCcEEEEecCCCcCHHHHHHhc
Confidence 357888999999999999886543
No 203
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=69.02 E-value=2.5 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.1
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.|.|-.||++|.||..+++.++..+.
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~P 294 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAP 294 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred ceeeecccccCcCHHHHHHHHHHhCC
Confidence 46788999999999999988877664
No 204
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=66.64 E-value=6 Score=16.10 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 035388 18 KDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 18 kt~~~v~~~F~~l~~~i~~~ 37 (66)
|+|+++-.+...+++.|+..
T Consensus 21 KtGe~FfKiWS~~~e~I~sY 40 (45)
T 3l32_A 21 RSGERFLKIWSQTVEEIVSY 40 (45)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHHH
Confidence 78999999999999988753
No 205
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=65.04 E-value=5.4 Score=22.88 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=16.5
Q ss_pred HHHHhCCCeEEcccCC---------CCCHHHHHHHHHHHHHHHhcCC
Q 035388 4 FADELGIPFLETSAKD---------AINVEQAFLTMAGEIKKKMGNQ 41 (66)
Q Consensus 4 ~a~~~~~~~~etSAkt---------~~~v~~~F~~l~~~i~~~~~~~ 41 (66)
.|+..+.|.|+.++.. ..+..+.|..||..|++.....
T Consensus 306 ~aq~~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~ 352 (361)
T 3pg5_A 306 TAQDVHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPN 352 (361)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4566778888888755 4578899999999999876543
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=62.69 E-value=8.8 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.+.|..||++|.||+.++..++..+.
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred ccccccccccCCCchhHhhhhhcccc
Confidence 57888999999999999988876553
No 207
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=59.75 E-value=11 Score=16.60 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHHH
Q 035388 22 NVEQAFLTMAGEIKKK 37 (66)
Q Consensus 22 ~v~~~F~~l~~~i~~~ 37 (66)
.|.++|.+|+..+..+
T Consensus 17 eL~~iF~dla~lV~eQ 32 (71)
T 2nps_B 17 DVNQIFKDLAMMIHDQ 32 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4678999999988654
No 208
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=55.71 E-value=12 Score=16.11 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHHH
Q 035388 22 NVEQAFLTMAGEIKKK 37 (66)
Q Consensus 22 ~v~~~F~~l~~~i~~~ 37 (66)
.+.++|..|+..+..+
T Consensus 20 eL~~iF~dla~lV~eQ 35 (65)
T 1gl2_B 20 DINEIFKDLGMMIHEQ 35 (65)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999988754
No 209
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=55.29 E-value=24 Score=19.36 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=19.2
Q ss_pred CCeEEcccCC------CCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKD------AINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt------~~~v~~~F~~l~~~i~ 35 (66)
..|+++|+++ +.||++++..+...+.
T Consensus 230 ~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 230 LGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 5678887765 6788888887766654
No 210
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=53.85 E-value=14 Score=16.07 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHHH
Q 035388 22 NVEQAFLTMAGEIKKK 37 (66)
Q Consensus 22 ~v~~~F~~l~~~i~~~ 37 (66)
.+.++|..|+..+..+
T Consensus 23 eL~~iF~dla~lV~eQ 38 (68)
T 1n7s_B 23 ELHDMFMDMAMLVESQ 38 (68)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999988764
No 211
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=53.68 E-value=15 Score=16.38 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHH
Q 035388 22 NVEQAFLTMAGEIKKK 37 (66)
Q Consensus 22 ~v~~~F~~l~~~i~~~ 37 (66)
.+.++|.+|+..+..+
T Consensus 21 eL~~iF~dla~lV~eQ 36 (77)
T 1jth_B 21 ELHDMFMDMAMLVESQ 36 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4678999999988765
No 212
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=51.29 E-value=16 Score=15.96 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHHH
Q 035388 22 NVEQAFLTMAGEIKKK 37 (66)
Q Consensus 22 ~v~~~F~~l~~~i~~~ 37 (66)
.+.++|..|+..+..+
T Consensus 21 eL~~iF~dla~lV~eQ 36 (69)
T 3b5n_B 21 ELTQLFNDMEELVIEQ 36 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999988754
No 213
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=49.21 E-value=1.9 Score=24.48 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.5
Q ss_pred HhCCCeEEcccCCCCCHHHHHHH
Q 035388 7 ELGIPFLETSAKDAINVEQAFLT 29 (66)
Q Consensus 7 ~~~~~~~etSAkt~~~v~~~F~~ 29 (66)
..+.+.+.+||+++.|+++++..
T Consensus 148 ~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 148 NIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HHTCCEEECCHHHHTTCTTTGGG
T ss_pred hCCCeEEEEecCCCCCHHHHHhh
Confidence 35788899999999998877654
No 214
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=47.06 E-value=21 Score=16.17 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHHH
Q 035388 22 NVEQAFLTMAGEIKKK 37 (66)
Q Consensus 22 ~v~~~F~~l~~~i~~~ 37 (66)
.+.++|.+|+..+..+
T Consensus 32 eL~~iF~dla~lV~eQ 47 (83)
T 1sfc_B 32 ELHDMFMDMAMLVESQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678899999888654
No 215
>1j5u_A Archease, possible chaperone; structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: d.208.1.1
Probab=44.28 E-value=21 Score=17.93 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 035388 19 DAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 19 t~~~v~~~F~~l~~~i~~~~ 38 (66)
.|..++++|...+..++...
T Consensus 28 ~G~tleEaFe~aa~Am~~~m 47 (136)
T 1j5u_A 28 SGNSYEELLEEARNILLEEE 47 (136)
T ss_dssp EESSHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHhc
Confidence 37789999999999998876
No 216
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=43.84 E-value=2.6 Score=27.11 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.0
Q ss_pred eEEcccCCCCCHHHHHHHHHHH
Q 035388 12 FLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 12 ~~etSAkt~~~v~~~F~~l~~~ 33 (66)
.+.+||++|.|+++++..+.+.
T Consensus 254 VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 254 VVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CCCCCCEESSSSEEHHHHHHHH
T ss_pred eEEecccccccchhHHHHHHHH
Confidence 4678999999999999988764
No 217
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=38.37 E-value=27 Score=15.94 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=9.8
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 035388 15 TSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 15 tSAkt~~~v~~~F~~l~~~ 33 (66)
++++...|+.+.|..-++.
T Consensus 3 ~~~~~~~nlQd~fLn~lrk 21 (78)
T 3ahu_A 3 LGSMKPINIQDQFLNQIRK 21 (78)
T ss_dssp -------CHHHHHHHHHHH
T ss_pred cccccccChHHHHHHHHHH
Confidence 4667788999999877664
No 218
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=38.35 E-value=18 Score=20.72 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=24.8
Q ss_pred HHHHHhCCCeEE---------cccCCCCCHHHHHHHHHHHHHH
Q 035388 3 AFADELGIPFLE---------TSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 3 ~~a~~~~~~~~e---------tSAkt~~~v~~~F~~l~~~i~~ 36 (66)
+||..++..-++ -+||||..|+++...|-+.+..
T Consensus 232 ~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~ 274 (306)
T 3tnt_A 232 LVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQN 274 (306)
T ss_dssp HHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 578888765444 3689999999998777665543
No 219
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=38.29 E-value=32 Score=17.17 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 035388 23 VEQAFLTMAGEIKK 36 (66)
Q Consensus 23 v~~~F~~l~~~i~~ 36 (66)
|+++|+.|+.+.-+
T Consensus 64 vnDiferIA~EAs~ 77 (123)
T 2nqb_D 64 VNDIFERIAAEASR 77 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68899999877644
No 220
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=36.97 E-value=34 Score=17.14 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 035388 23 VEQAFLTMAGEIKK 36 (66)
Q Consensus 23 v~~~F~~l~~~i~~ 36 (66)
|+++|+.|+.+.-+
T Consensus 67 vnDiferIA~EAs~ 80 (126)
T 1tzy_B 67 VNDIFERIAGEASR 80 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68899999877644
No 221
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.11 E-value=35 Score=18.52 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHH
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAGEIKK 36 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~ 36 (66)
.+|+++|++.+..-. ...|.++|.+..+.+..
T Consensus 166 ~~A~~~Gl~~vlI~s--~eSI~~Ai~eA~~l~~~ 197 (225)
T 2pju_A 166 DLAEEAGMTGIFIYS--AATVRQAFSDALDMTRM 197 (225)
T ss_dssp HHHHHTTSEEEESSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEECC--HHHHHHHHHHHHHHHHH
Confidence 579999998655542 48899999887776654
No 222
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=33.38 E-value=32 Score=19.72 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=25.2
Q ss_pred HHHHHHhCCCeEEcccCCCCCHHHHHHHHHHH
Q 035388 2 QAFADELGIPFLETSAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~ 33 (66)
.+.|++.+++.+.|++.+...+..+-..|...
T Consensus 97 ie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 97 IEAAKEHETPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp HHHHHHTTCCEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECCchhHHHHHHHHHHHHh
Confidence 35788899999999999988888876555543
No 223
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=31.42 E-value=4.5 Score=19.19 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=16.8
Q ss_pred eEEcccCCCCCHHHHHHHHHHHH
Q 035388 12 FLETSAKDAINVEQAFLTMAGEI 34 (66)
Q Consensus 12 ~~etSAkt~~~v~~~F~~l~~~i 34 (66)
-||.|+-+..||......+.+.-
T Consensus 38 qfeis~~sayniqr~l~~ice~h 60 (118)
T 2vqc_A 38 QFEISVPSAYNIQRALKAICERH 60 (118)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHC
T ss_pred HheeccchHhHHHHHHHHHHhcC
Confidence 37889988888887776665543
No 224
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=30.86 E-value=49 Score=15.76 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHHH
Q 035388 22 NVEQAFLTMAGEIKKK 37 (66)
Q Consensus 22 ~v~~~F~~l~~~i~~~ 37 (66)
.+.++|.+++..+.++
T Consensus 32 eL~~iF~dla~lV~eQ 47 (109)
T 3hd7_B 32 ELHDMFMDMAMLVESQ 47 (109)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4678899999888654
No 225
>1jw3_A Conserved hypothetical protein MTH1598; structural genomics, protein structure initiative, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.208.1.1
Probab=30.11 E-value=57 Score=16.31 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q 035388 20 AINVEQAFLTMAGEIKKKMG 39 (66)
Q Consensus 20 ~~~v~~~F~~l~~~i~~~~~ 39 (66)
|..++++|...+..++....
T Consensus 19 G~tlee~F~~aa~am~~~m~ 38 (140)
T 1jw3_A 19 GHDLEEVFENAALAMFEVMT 38 (140)
T ss_dssp CSSSHHHHHHHHHHHHHHHS
T ss_pred ECCHHHHHHHHHHHHHHHhh
Confidence 67899999999999998754
No 226
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=28.44 E-value=18 Score=16.03 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHHH
Q 035388 20 AINVEQAFLTMAGEIK 35 (66)
Q Consensus 20 ~~~v~~~F~~l~~~i~ 35 (66)
..+++++|.+|-..+.
T Consensus 4 ev~~~elF~eLD~diR 19 (69)
T 1skv_A 4 EVLEKELFEMLDEDVR 19 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3467889988865543
No 227
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=27.57 E-value=7.5 Score=18.09 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=8.5
Q ss_pred eEEcccCCCCC
Q 035388 12 FLETSAKDAIN 22 (66)
Q Consensus 12 ~~etSAkt~~~ 22 (66)
+||++++.|.|
T Consensus 76 lfE~~~~~g~~ 86 (88)
T 2lc3_A 76 FCEHGTKSGLN 86 (88)
T ss_dssp HHHHTCTTTSS
T ss_pred HHhcccccccc
Confidence 68888888765
No 228
>1irq_A Omega transcriptional repressor; ribbon-helix-helix, gene regulation; 1.50A {Streptococcus pyogenes} SCOP: a.43.1.4 PDB: 2bnw_A 2bnz_A 2cax_A
Probab=27.43 E-value=48 Score=14.57 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=17.7
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHh
Q 035388 15 TSAKDAINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 15 tSAkt~~~v~~~F~~l~~~i~~~~ 38 (66)
-++++|.++.++.....+.-+++.
T Consensus 43 ~~~~~g~~~~e~~~~Ale~ylr~~ 66 (71)
T 1irq_A 43 ETAKNGGNVKEVMDQALEEYIRKY 66 (71)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred eehhcccCHHHHHHHHHHHHHHHh
Confidence 367788888888877777666554
No 229
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=26.05 E-value=18 Score=15.37 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=10.4
Q ss_pred cccCCCCCHHHHHHH
Q 035388 15 TSAKDAINVEQAFLT 29 (66)
Q Consensus 15 tSAkt~~~v~~~F~~ 29 (66)
.++..|.+|+++...
T Consensus 42 ~~~L~gk~i~elI~~ 56 (58)
T 3a1y_A 42 VAALEGVNIDEVIEK 56 (58)
T ss_dssp HHHHSSCCHHHHHHH
T ss_pred HHHHCCCCHHHHHHc
Confidence 456678888887644
No 230
>1nyc_A Staphostatin B, cysteine protease inhibitor; SSPC, hydrolase inhibitor; 1.40A {Staphylococcus aureus subsp} SCOP: b.61.2.2 PDB: 1pxv_C 1y4h_C 1qwx_A
Probab=25.95 E-value=30 Score=16.26 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=9.2
Q ss_pred CeEEcccCCCCC
Q 035388 11 PFLETSAKDAIN 22 (66)
Q Consensus 11 ~~~etSAkt~~~ 22 (66)
.|+.||.|.|.|
T Consensus 89 i~~qts~k~~~g 100 (111)
T 1nyc_A 89 ILMQTSSKQGIG 100 (111)
T ss_dssp EEEEEEESSSSC
T ss_pred EEEEeecccCcC
Confidence 367888888776
No 231
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=25.92 E-value=4.3 Score=23.78 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.1
Q ss_pred CCCeEEcccCCCCCHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAF 27 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F 27 (66)
+..++.+||+.+.+|.+++
T Consensus 243 ~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 243 GYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp TCEEEEECHHHHHHHHSCS
T ss_pred CCcEEEEeccchhhHHHHH
Confidence 6779999999999997754
No 232
>2o4t_A BH3976 protein; LEFT-handed superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Probab=25.71 E-value=6.7 Score=18.82 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=13.3
Q ss_pred CeEEcccCCCCCHHHHH
Q 035388 11 PFLETSAKDAINVEQAF 27 (66)
Q Consensus 11 ~~~etSAkt~~~v~~~F 27 (66)
.+||-+|..|..|.++|
T Consensus 45 dlfEeaaa~Gk~v~eV~ 61 (100)
T 2o4t_A 45 GFFEEGAAAGKGVLDVT 61 (100)
T ss_dssp HHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHcCCchHHHh
Confidence 36788888888888876
No 233
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=25.56 E-value=25 Score=17.06 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=10.2
Q ss_pred HHHHHHhCCCeEEc
Q 035388 2 QAFADELGIPFLET 15 (66)
Q Consensus 2 ~~~a~~~~~~~~et 15 (66)
..||+.+|+.|.-.
T Consensus 73 iayAek~G~~y~V~ 86 (108)
T 2lju_A 73 IAYAVAHKIDYTVL 86 (108)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHcCCEEEEe
Confidence 46888888887643
No 234
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=25.49 E-value=96 Score=17.39 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=26.6
Q ss_pred HHHHHhCCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 3 AFADELGIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 3 ~~a~~~~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
+.|+++|+.++|.|.=+-.-=++....+++.+.+.
T Consensus 92 ~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~ 126 (251)
T 1qwg_A 92 NECEKLGFEAVEISDGSSDISLEERNNAIKRAKDN 126 (251)
T ss_dssp HHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHC
Confidence 56888999999999987666666677777776554
No 235
>1zx3_A Hypothetical protein NE0241; structural genomics, PSI, prote structure initiative, midwest center for structural genomic unknown function; 2.50A {Nitrosomonas europaea} SCOP: a.43.1.6
Probab=25.26 E-value=51 Score=15.48 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.1
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 035388 16 SAKDAINVEQAFLTMAGE 33 (66)
Q Consensus 16 SAkt~~~v~~~F~~l~~~ 33 (66)
|.-||..|.++|-..++-
T Consensus 64 sqetgkeisdifanavef 81 (122)
T 1zx3_A 64 SQETGKEISDIFANAVEF 81 (122)
T ss_dssp HHTTCCCHHHHHHHHHHH
T ss_pred hhhhcchHHHHHhhhhhe
Confidence 556899999999877653
No 236
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=25.03 E-value=59 Score=20.64 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=21.1
Q ss_pred CCeEEcccCCCCCHHHHHHHHHHHHH
Q 035388 10 IPFLETSAKDAINVEQAFLTMAGEIK 35 (66)
Q Consensus 10 ~~~~etSAkt~~~v~~~F~~l~~~i~ 35 (66)
.+.+-.||+++.+|..+++.++..+.
T Consensus 265 ~pv~~gsa~~~~gv~~lLd~i~~~lP 290 (709)
T 4fn5_A 265 VPAVCGSSFKNKGVPLVLDAVIDYLP 290 (709)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHSC
T ss_pred eeeeeeecccCCchHHHHHHHHhhCC
Confidence 45788999999999998887776653
No 237
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=24.98 E-value=27 Score=16.92 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=12.2
Q ss_pred HHHHHHhCCCeEEcccC
Q 035388 2 QAFADELGIPFLETSAK 18 (66)
Q Consensus 2 ~~~a~~~~~~~~etSAk 18 (66)
..||+.+|+.|.-.-.+
T Consensus 65 iayAek~G~~y~V~ep~ 81 (106)
T 2jya_A 65 EAYAQRKGIEYRVILPK 81 (106)
T ss_dssp HHHHHHHTCEEEECCCT
T ss_pred HHHHHHcCCEEEEeCCC
Confidence 46899999888654443
No 238
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=24.76 E-value=79 Score=16.15 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=21.3
Q ss_pred CCCeEEcccCCCCCHHHHHHHHHHHHHHH
Q 035388 9 GIPFLETSAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 9 ~~~~~etSAkt~~~v~~~F~~l~~~i~~~ 37 (66)
|+.|+-++-....+|..+|..|-+.++-.
T Consensus 85 giKFvl~td~~~~~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 85 GLWFVLLSDFKQQSYTQVLQYIYSHIYVK 113 (159)
T ss_dssp CCEEEEECCSSSSCTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcchHHHHHHHHHHHHHHH
Confidence 45666666666889999999998855543
No 239
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=24.24 E-value=4.9 Score=18.69 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=12.1
Q ss_pred CeEEcccCCCCCHHHHH
Q 035388 11 PFLETSAKDAINVEQAF 27 (66)
Q Consensus 11 ~~~etSAkt~~~v~~~F 27 (66)
.+||-+|..|..|.++|
T Consensus 48 dlfEeaaa~G~~v~eV~ 64 (85)
T 2o3l_A 48 DLFEAGAAEGRQVLDIT 64 (85)
T ss_dssp HHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHcCCchHHHh
Confidence 35677777777777775
No 240
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=23.33 E-value=44 Score=12.72 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 035388 21 INVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 21 ~~v~~~F~~l~~~i~~~~ 38 (66)
.++.++...+++.+++..
T Consensus 5 ~~l~~lL~~~~~~vl~~q 22 (41)
T 2izx_A 5 PGLTELLQGYTVEVLRQQ 22 (41)
T ss_dssp TTHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHC
Confidence 578899999999998764
No 241
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=22.61 E-value=51 Score=14.06 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=13.0
Q ss_pred ccCCCCCHHHHHHHHHH
Q 035388 16 SAKDAINVEQAFLTMAG 32 (66)
Q Consensus 16 SAkt~~~v~~~F~~l~~ 32 (66)
.|||-+||..+-.+|..
T Consensus 35 ~AkTvEgv~~Lk~Eil~ 51 (56)
T 2fs1_A 35 NAKTVEGVESLKNEILK 51 (56)
T ss_dssp TCSSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 88999998887766543
No 242
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI, unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Probab=21.68 E-value=9.1 Score=18.79 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=12.9
Q ss_pred CeEEcccCCCCCHHHHH
Q 035388 11 PFLETSAKDAINVEQAF 27 (66)
Q Consensus 11 ~~~etSAkt~~~v~~~F 27 (66)
.+||-+|..|..|.++|
T Consensus 64 dLfEeaaa~G~~v~eV~ 80 (113)
T 2hh6_A 64 DLFEEGAAEGKKVTDLT 80 (113)
T ss_dssp HHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHcCCchHHHh
Confidence 36777888888888776
No 243
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=21.26 E-value=68 Score=14.36 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=15.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 035388 16 SAKDAINVEQAFLTMAGEIKKK 37 (66)
Q Consensus 16 SAkt~~~v~~~F~~l~~~i~~~ 37 (66)
.|..|.-+.++..++++..+..
T Consensus 53 Aa~~g~Smsdvvreli~~~L~~ 74 (76)
T 1p94_A 53 CARKGTSITDVVNQLVDNWLKE 74 (76)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHh
Confidence 3456777888888887776653
No 244
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=21.04 E-value=57 Score=13.17 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 035388 20 AINVEQAFLTMAGEIKKKM 38 (66)
Q Consensus 20 ~~~v~~~F~~l~~~i~~~~ 38 (66)
-.++.++...+++.+++..
T Consensus 12 p~~l~~lL~~~~~evlr~q 30 (50)
T 2kyg_A 12 PPGLTELLQGYTVEVLRQQ 30 (50)
T ss_dssp CTTHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHC
Confidence 4678999999999998764
Done!