Query 035391
Match_columns 66
No_of_seqs 101 out of 143
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 02:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3477 Putative cytochrome c 100.0 7.7E-36 1.7E-40 194.2 5.6 65 1-66 1-65 (97)
2 PF06747 CHCH: CHCH domain; I 99.1 3.2E-11 6.8E-16 63.5 2.6 35 31-65 1-35 (35)
3 KOG4695 Uncharacterized conser 95.8 0.011 2.4E-07 40.3 3.3 36 28-63 45-80 (122)
4 PF08991 DUF1903: Domain of un 94.9 0.038 8.2E-07 33.7 3.2 34 30-63 3-36 (67)
5 cd00926 Cyt_c_Oxidase_VIb Cyto 92.6 0.22 4.8E-06 30.7 3.6 40 21-60 12-52 (75)
6 PF05676 NDUF_B7: NADH-ubiquin 92.5 0.089 1.9E-06 32.2 1.7 42 23-64 14-55 (66)
7 KOG4618 Uncharacterized conser 88.2 0.75 1.6E-05 29.1 3.2 35 29-63 22-56 (74)
8 PF02297 COX6B: Cytochrome oxi 87.9 0.53 1.2E-05 28.5 2.4 33 30-62 11-53 (76)
9 PF10203 Pet191_N: Cytochrome 86.1 0.71 1.5E-05 28.1 2.2 28 37-64 28-56 (68)
10 PF08583 Cmc1: Cytochrome c ox 79.7 1.8 3.8E-05 24.7 2.1 34 29-62 11-45 (69)
11 PF10200 Ndufs5: NADH:ubiquino 79.5 3.8 8.3E-05 26.7 3.8 41 24-64 26-68 (96)
12 KOG3057 Cytochrome c oxidase, 76.9 5.1 0.00011 27.0 3.9 43 18-60 44-87 (112)
13 KOG4090 Uncharacterized conser 76.2 4.2 9.1E-05 28.9 3.5 41 23-63 110-150 (157)
14 KOG4083 Head-elevated expressi 75.0 2.6 5.6E-05 30.8 2.2 36 27-62 144-179 (192)
15 PF05051 COX17: Cytochrome C o 74.4 3.8 8.3E-05 24.0 2.5 18 31-48 31-48 (49)
16 KOG3481 Uncharacterized conser 69.6 8.9 0.00019 24.9 3.6 35 29-63 11-53 (87)
17 PF05051 COX17: Cytochrome C o 68.9 11 0.00023 22.2 3.5 31 30-62 11-41 (49)
18 PF10249 NDUFB10: NADH-ubiquin 66.9 9.7 0.00021 26.0 3.5 26 36-61 68-94 (128)
19 PLN03079 Uncharacterized prote 58.5 39 0.00083 22.1 5.0 35 30-64 17-59 (91)
20 KOG3458 NADH:ubiquinone oxidor 57.1 9.3 0.0002 27.4 2.1 34 30-63 77-111 (170)
21 PF07956 DUF1690: Protein of U 56.7 20 0.00043 24.3 3.6 36 27-62 105-140 (142)
22 KOG4114 Cytochrome c oxidase a 49.9 15 0.00034 23.2 2.1 15 48-62 41-55 (73)
23 PF02320 UCR_hinge: Ubiquinol- 48.4 31 0.00068 20.7 3.2 35 29-63 15-52 (65)
24 KOG4110 NADH:ubiquinone oxidor 47.9 34 0.00074 23.4 3.6 46 18-63 22-70 (120)
25 PF05254 UPF0203: Uncharacteri 40.6 51 0.0011 19.9 3.3 34 30-63 8-49 (68)
26 PF15628 RRM_DME: RRM in Demet 39.1 13 0.00028 24.8 0.5 8 19-26 11-18 (103)
27 PF07802 GCK: GCK domain; Int 38.2 50 0.0011 20.6 3.0 35 28-62 11-50 (76)
28 KOG3846 L-kynurenine hydrolase 32.1 19 0.00042 29.0 0.6 17 13-29 149-171 (465)
29 KOG3584 cAMP response element 31.5 19 0.00041 28.3 0.5 19 44-62 298-316 (348)
30 KOG3496 Cytochrome c oxidase a 31.1 47 0.001 20.9 2.1 21 28-48 51-71 (72)
31 KOG3468 NADH:ubiquinone oxidor 29.7 27 0.00058 24.1 0.9 40 24-63 50-89 (128)
32 KOG2966 Uncharacterized conser 26.4 37 0.00081 26.6 1.3 22 11-32 130-151 (325)
33 KOG4148 Uncharacterized conser 24.8 42 0.00092 22.5 1.1 23 27-49 32-54 (106)
34 PF03392 OS-D: Insect pheromon 24.3 82 0.0018 19.9 2.4 23 33-59 18-40 (95)
35 KOG3231 Predicted assembly/vac 23.7 66 0.0014 23.7 2.0 18 46-63 51-68 (208)
36 PF11001 DUF2841: Protein of u 23.2 1.6E+02 0.0036 19.8 3.8 25 35-61 10-34 (126)
37 KOG3176 Predicted alpha-helica 22.6 23 0.0005 26.4 -0.5 15 51-65 86-100 (223)
38 COG4371 Predicted membrane pro 22.4 83 0.0018 24.6 2.4 22 2-23 57-78 (334)
39 PF01523 PmbA_TldD: Putative m 21.6 52 0.0011 22.8 1.1 18 15-32 261-279 (293)
40 KOG4624 Uncharacterized conser 20.1 1.2E+02 0.0026 20.3 2.6 33 30-62 32-65 (104)
No 1
>KOG3477 consensus Putative cytochrome c oxidase, subunit COX19 [Energy production and conversion]
Probab=100.00 E-value=7.7e-36 Score=194.20 Aligned_cols=65 Identities=62% Similarity=1.231 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcccCC
Q 035391 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAK 66 (66)
Q Consensus 1 Ms~g~p~~~~~~~~p~pPerGsFPLDH~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CRMd~ 66 (66)
|| ++++++.+..+|+||+||||||||+|||+..|++||.||+....|++.||.+||+||+|||++
T Consensus 1 MS-~~g~~~~r~lrp~pPekGsFPLDH~geC~~em~eYl~Cl~~k~e~~~eCR~laK~YlqCRMdh 65 (97)
T KOG3477|consen 1 MS-TGGAGGNRGLRPIPPEKGSFPLDHLGECTAEMKEYLGCLKSKAENSEECRLLAKKYLQCRMDH 65 (97)
T ss_pred CC-CCCCCCcccccCCCcccCCcCCCcccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Confidence 78 455578899999999999999999999999999999999999999999999999999999986
No 2
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=99.14 E-value=3.2e-11 Score=63.50 Aligned_cols=35 Identities=43% Similarity=0.789 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHcCCCChhHHHHHHHHhhcccC
Q 035391 31 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMA 65 (66)
Q Consensus 31 Ck~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CRMd 65 (66)
|..+|..|+.||++|+.+.+.||.+++.|++|||+
T Consensus 1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C~~~ 35 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKECRMK 35 (35)
T ss_dssp THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHHhhC
Confidence 78999999999999999999999999999999985
No 3
>KOG4695 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.011 Score=40.31 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=34.3
Q ss_pred cccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 035391 28 MHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (66)
Q Consensus 28 ~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CR 63 (66)
+-.|..+|..-+.|||.|...+..||++-..|+.|-
T Consensus 45 ~~tC~qEm~vlfaClK~nEF~d~~C~Kei~~f~dC~ 80 (122)
T KOG4695|consen 45 EATCIQEMSVLFACLKQNEFRDDACRKEIQGFLDCA 80 (122)
T ss_pred chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999993
No 4
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=94.92 E-value=0.038 Score=33.75 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 035391 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (66)
Q Consensus 30 eCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CR 63 (66)
.|+.+.-....||.+|+.+.+.|...-.+|-+|.
T Consensus 3 PC~~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~~Cc 36 (67)
T PF08991_consen 3 PCQKEACAIQKCLQRNNYDESKCQDYIDALYECC 36 (67)
T ss_dssp TTHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4888889999999999999999999999998885
No 5
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=92.60 E-value=0.22 Score=30.69 Aligned_cols=40 Identities=28% Similarity=0.638 Sum_probs=31.5
Q ss_pred CCCC-CCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 035391 21 GVFP-LDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60 (66)
Q Consensus 21 GsFP-LDH~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL 60 (66)
=.|| -----.|-..-..|..||++++.+++.|..+-+.|=
T Consensus 12 ~RfP~~nq~k~Cw~~y~~y~~Cl~~~ged~~~C~~~~~~~e 52 (75)
T cd00926 12 PRFPNQNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYE 52 (75)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3455 333456777788999999999999999999998873
No 6
>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=92.51 E-value=0.089 Score=32.18 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=38.6
Q ss_pred CCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhccc
Q 035391 23 FPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRM 64 (66)
Q Consensus 23 FPLDH~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CRM 64 (66)
-||..-..|-...+.|++|++++-...-.|..+--+|..|.-
T Consensus 14 lPl~~RDyCAh~Li~l~kCrr~~~p~~~~C~~erH~y~~C~y 55 (66)
T PF05676_consen 14 LPLQYRDYCAHLLIPLNKCRRDNFPFPWKCEHERHEYEKCQY 55 (66)
T ss_pred CChhhhhhHHHHHHHHHHHHHhCCCCcccCCcchhhHHHccH
Confidence 588888999999999999999998888999999999999963
No 7
>KOG4618 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.22 E-value=0.75 Score=29.14 Aligned_cols=35 Identities=26% Similarity=0.624 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 035391 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CR 63 (66)
.-|-+.-..-++||.+|+.+-++|...=-.|=+|+
T Consensus 22 nPCl~es~aSfkCLeennyDRsKCq~yFd~YkeCK 56 (74)
T KOG4618|consen 22 NPCLLESSASFKCLEENNYDRSKCQDYFDVYKECK 56 (74)
T ss_pred ChHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 56888889999999999999999999999998886
No 8
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=87.94 E-value=0.53 Score=28.48 Aligned_cols=33 Identities=33% Similarity=0.886 Sum_probs=28.5
Q ss_pred cchHHHHHHHHHHHHcCC---------CChhHHHHHHHHhh-c
Q 035391 30 QCDLEKKDYIGCLKSSGH---------QSENCRIFSKKYLE-C 62 (66)
Q Consensus 30 eCk~~m~~Y~~CLk~~~~---------~~~~CR~lak~YL~-C 62 (66)
.|=..-..|..||.+++. +...|..+-+.|-+ |
T Consensus 11 ~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~C 53 (76)
T PF02297_consen 11 KCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNC 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhC
Confidence 467778899999999988 88999999999965 5
No 9
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=86.14 E-value=0.71 Score=28.09 Aligned_cols=28 Identities=29% Similarity=0.681 Sum_probs=20.8
Q ss_pred HHHHHHHHc-CCCChhHHHHHHHHhhccc
Q 035391 37 DYIGCLKSS-GHQSENCRIFSKKYLECRM 64 (66)
Q Consensus 37 ~Y~~CLk~~-~~~~~~CR~lak~YL~CRM 64 (66)
.+-.||+.+ ..-...|..+-++|.+|+.
T Consensus 28 t~~~Cl~~~~~~~p~eC~~lr~~f~eCKr 56 (68)
T PF10203_consen 28 TPKDCLKDPSDELPEECQQLRKAFFECKR 56 (68)
T ss_pred CHHHHHcCCCCcCCHHHHHHHHHHHHHhc
Confidence 344555555 4556799999999999985
No 10
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=79.69 E-value=1.8 Score=24.74 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=25.5
Q ss_pred ccchHHHHHHHHHHHHcC-CCChhHHHHHHHHhhc
Q 035391 29 HQCDLEKKDYIGCLKSSG-HQSENCRIFSKKYLEC 62 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~~~-~~~~~CR~lak~YL~C 62 (66)
-.|..++..|..|.+... .....||.+.++.-+|
T Consensus 11 ~~C~~~i~~~~~C~~~~~~~~~~~C~~~~~~m~~C 45 (69)
T PF08583_consen 11 KKCADEIEAFAECHKDRTFKFVGKCREEKKAMNEC 45 (69)
T ss_pred HHhHHHHHHHHHHHhcchHHHHHhhhHHHHHHHHH
Confidence 578888888888888753 3456888888777766
No 11
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=79.47 E-value=3.8 Score=26.71 Aligned_cols=41 Identities=24% Similarity=0.660 Sum_probs=33.8
Q ss_pred CCCCcccchHHHHHHHHHHHHcCCC--ChhHHHHHHHHhhccc
Q 035391 24 PLDHMHQCDLEKKDYIGCLKSSGHQ--SENCRIFSKKYLECRM 64 (66)
Q Consensus 24 PLDH~geCk~~m~~Y~~CLk~~~~~--~~~CR~lak~YL~CRM 64 (66)
|--..+-|-.+-.+|+.|+...+.. ...|+.+--+|++|-.
T Consensus 26 ~~~~~~RC~~FE~e~i~C~~~~G~~r~kKeC~~e~EDy~EClh 68 (96)
T PF10200_consen 26 PYKQPSRCHPFEKEWIECAEAYGQTRGKKECKLELEDYYECLH 68 (96)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcccchhhhchhHHhHHHHHHh
Confidence 4455678999999999999887553 4699999999999953
No 12
>KOG3057 consensus Cytochrome c oxidase, subunit VIb/COX12 [Energy production and conversion]
Probab=76.95 E-value=5.1 Score=27.02 Aligned_cols=43 Identities=30% Similarity=0.682 Sum_probs=34.1
Q ss_pred CCCCCCC-CCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 035391 18 PEKGVFP-LDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60 (66)
Q Consensus 18 PerGsFP-LDH~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL 60 (66)
|--=-|| -..-..|-..-.+|-+|++.++.+...|..+.+.|=
T Consensus 44 p~d~RFP~~nqtrhCf~~y~dyhrC~~~~geD~~~Ck~f~~~y~ 87 (112)
T KOG3057|consen 44 PVDARFPNTNQTRHCFQRYVDYHRCIKAKGEDANPCKKFQKVYR 87 (112)
T ss_pred cccccCCCcchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 3334466 445566777778999999999999999999999984
No 13
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.20 E-value=4.2 Score=28.86 Aligned_cols=41 Identities=20% Similarity=0.585 Sum_probs=33.9
Q ss_pred CCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 035391 23 FPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (66)
Q Consensus 23 FPLDH~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CR 63 (66)
-|-.--+-|+-+.+.|+.|+..++.|.+.|--+...-=+|+
T Consensus 110 q~~q~~~~C~~e~kqF~dCa~~~~~d~slC~~f~e~Lk~Ck 150 (157)
T KOG4090|consen 110 QPAQQQQPCFIEIKQFLDCAQNQGSDISLCEGYNEMLKQCK 150 (157)
T ss_pred chhhhcCchHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 44445667999999999999999999999988777666675
No 14
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=75.01 E-value=2.6 Score=30.75 Aligned_cols=36 Identities=11% Similarity=0.420 Sum_probs=32.7
Q ss_pred CcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhc
Q 035391 27 HMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (66)
Q Consensus 27 H~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~C 62 (66)
-.-.|...-..++.|+++|-...-+|-.+++.|..|
T Consensus 144 ~~pvCqdlq~qil~Cyr~~p~e~LkC~~lv~af~~C 179 (192)
T KOG4083|consen 144 REPVCQDLQAQILRCYRENPGEVLKCSPLVAAFMKC 179 (192)
T ss_pred cCCcccccHHHHHHHHhcCCCccccccHHHHHHHHH
Confidence 455788889999999999988999999999999998
No 15
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=74.38 E-value=3.8 Score=24.03 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHcCCC
Q 035391 31 CDLEKKDYIGCLKSSGHQ 48 (66)
Q Consensus 31 Ck~~m~~Y~~CLk~~~~~ 48 (66)
|++.+..|-+||+..|.+
T Consensus 31 C~~~Ieahk~Cmr~~GF~ 48 (49)
T PF05051_consen 31 CKELIEAHKACMRGEGFK 48 (49)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999998764
No 16
>KOG3481 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.62 E-value=8.9 Score=24.94 Aligned_cols=35 Identities=26% Similarity=0.554 Sum_probs=28.6
Q ss_pred ccchHHHHHHHHHHHH--------cCCCChhHHHHHHHHhhcc
Q 035391 29 HQCDLEKKDYIGCLKS--------SGHQSENCRIFSKKYLECR 63 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~--------~~~~~~~CR~lak~YL~CR 63 (66)
-||++....|=+|..+ .......|-.|=+.|.+|-
T Consensus 11 ~eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv 53 (87)
T KOG3481|consen 11 PECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCV 53 (87)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHH
Confidence 4899999999999754 2455679999999999994
No 17
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=68.87 E-value=11 Score=22.17 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHHcCCCChhHHHHHHHHhhc
Q 035391 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (66)
Q Consensus 30 eCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~C 62 (66)
.|.+....==.|+-.|+.++ |..+-.+|-+|
T Consensus 11 aCpetK~aRDeC~l~~g~e~--C~~~Ieahk~C 41 (49)
T PF05051_consen 11 ACPETKKARDECILFNGEED--CKELIEAHKAC 41 (49)
T ss_dssp TSHHHHHHHHHHHHHC-CCC--CHHHHHHHHHH
T ss_pred cChhHHHHhHhhHHhcChHH--HHHHHHHHHHH
Confidence 47788888889999998887 99999999998
No 18
>PF10249 NDUFB10: NADH-ubiquinone oxidoreductase subunit 10; InterPro: IPR019377 NADH-ubiquinone oxidoreductase subunit 10 of (NDUFB10) is a member of a family of conserved proteins of up to 180 residues. It is one of the 41 protein subunits within the hydrophobic fraction of the NADH:ubiquinone oxidoreductase (complex I), a multiprotein complex located in the inner mitochondrial membrane whose main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. NDUFB10 is encoded in the nucleus.
Probab=66.87 E-value=9.7 Score=25.96 Aligned_cols=26 Identities=27% Similarity=0.640 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCCC-hhHHHHHHHHhh
Q 035391 36 KDYIGCLKSSGHQS-ENCRIFSKKYLE 61 (66)
Q Consensus 36 ~~Y~~CLk~~~~~~-~~CR~lak~YL~ 61 (66)
..+-.|.+.+|.|. .+|+++.+.|++
T Consensus 68 eRl~~C~~~EG~nh~qnC~~l~~qy~e 94 (128)
T PF10249_consen 68 ERLEACYRREGVNHYQNCRKLVEQYEE 94 (128)
T ss_pred HHHHHHHHHHCcCHhhhhHHHHHHHHH
Confidence 36778999999998 899999999985
No 19
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=58.49 E-value=39 Score=22.07 Aligned_cols=35 Identities=26% Similarity=0.554 Sum_probs=27.8
Q ss_pred cchHHHHHHHHHHHHc-------CC-CChhHHHHHHHHhhccc
Q 035391 30 QCDLEKKDYIGCLKSS-------GH-QSENCRIFSKKYLECRM 64 (66)
Q Consensus 30 eCk~~m~~Y~~CLk~~-------~~-~~~~CR~lak~YL~CRM 64 (66)
||+.....|-.|..+- |. ....|..+=++|-+|-.
T Consensus 17 eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~ 59 (91)
T PLN03079 17 PCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLS 59 (91)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHH
Confidence 4999999999998732 22 23689999999999954
No 20
>KOG3458 consensus NADH:ubiquinone oxidoreductase, NDUFA8/PGIV/19 kDa subunit [Energy production and conversion]
Probab=57.13 E-value=9.3 Score=27.42 Aligned_cols=34 Identities=24% Similarity=0.493 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHHc-CCCChhHHHHHHHHhhcc
Q 035391 30 QCDLEKKDYIGCLKSS-GHQSENCRIFSKKYLECR 63 (66)
Q Consensus 30 eCk~~m~~Y~~CLk~~-~~~~~~CR~lak~YL~CR 63 (66)
-|-..|.+|..|+-.. .+.=+.||+..+++=+|-
T Consensus 77 ~C~~e~~~y~~C~dysst~~f~~Crk~Q~~fdkcv 111 (170)
T KOG3458|consen 77 SCLEEFTKYATCMDYSSTNEFSHCRKEQEAFDKCV 111 (170)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5889999999999988 556679999999987774
No 21
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=56.67 E-value=20 Score=24.35 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=31.3
Q ss_pred CcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhc
Q 035391 27 HMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (66)
Q Consensus 27 H~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~C 62 (66)
|..+++.+-..-..||+.|..-.-.|-.+..++=.|
T Consensus 105 ~~~~v~~aR~~vv~CL~~N~~rPLnCw~EVe~FKk~ 140 (142)
T PF07956_consen 105 NSEEVEKARSAVVRCLRENDGRPLNCWEEVEAFKKE 140 (142)
T ss_pred cchhhHHHHHHHHHHHHHCCCCCCchHHHHHHHHHH
Confidence 667899999999999999999999999998876444
No 22
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=49.90 E-value=15 Score=23.16 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=10.4
Q ss_pred CChhHHHHHHHHhhc
Q 035391 48 QSENCRIFSKKYLEC 62 (66)
Q Consensus 48 ~~~~CR~lak~YL~C 62 (66)
-.+.|-.+-+.|++|
T Consensus 41 vPeeC~al~~af~dC 55 (73)
T KOG4114|consen 41 VPEECIALMKAFLDC 55 (73)
T ss_pred CcHHHHHHHHHHHHH
Confidence 456777777777776
No 23
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=48.44 E-value=31 Score=20.67 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=27.8
Q ss_pred ccchHHHHHHHHHHHHc---CCCChhHHHHHHHHhhcc
Q 035391 29 HQCDLEKKDYIGCLKSS---GHQSENCRIFSKKYLECR 63 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~~---~~~~~~CR~lak~YL~CR 63 (66)
.+|......|-.|..+. .+..+.|-..--+|+.|.
T Consensus 15 ~~C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCv 52 (65)
T PF02320_consen 15 PKCAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCV 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 46889999999999986 335589999999999884
No 24
>KOG4110 consensus NADH:ubiquinone oxidoreductase, NDUFS5/15kDa [Energy production and conversion]
Probab=47.93 E-value=34 Score=23.37 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=39.9
Q ss_pred CCCCCCCCCCccc-chHHHHHHHHHHHHcCC--CChhHHHHHHHHhhcc
Q 035391 18 PEKGVFPLDHMHQ-CDLEKKDYIGCLKSSGH--QSENCRIFSKKYLECR 63 (66)
Q Consensus 18 PerGsFPLDH~ge-Ck~~m~~Y~~CLk~~~~--~~~~CR~lak~YL~CR 63 (66)
-|-++=|+.|-|. |-.+-++++.|...-+. --..|+.+-.++.+|-
T Consensus 22 tds~~~p~~~q~r~cg~FE~e~~eC~eayG~~~g~keC~ie~~dFqECv 70 (120)
T KOG4110|consen 22 TDSTEQPYKHQGRDCGKFEKEWMECAEAYGLERGEKECAIEYDDFQECV 70 (120)
T ss_pred cccccCccccccccccHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 4778899999999 99999999999998854 3458999999999984
No 25
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=40.57 E-value=51 Score=19.93 Aligned_cols=34 Identities=26% Similarity=0.637 Sum_probs=24.3
Q ss_pred cchHHHHHHHHHHHHc-------CC-CChhHHHHHHHHhhcc
Q 035391 30 QCDLEKKDYIGCLKSS-------GH-QSENCRIFSKKYLECR 63 (66)
Q Consensus 30 eCk~~m~~Y~~CLk~~-------~~-~~~~CR~lak~YL~CR 63 (66)
||+....+|=+|...- |. ....|..+=++|-+|-
T Consensus 8 eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv 49 (68)
T PF05254_consen 8 ECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCV 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHH
Confidence 7888888888886532 22 2348888888888874
No 26
>PF15628 RRM_DME: RRM in Demeter
Probab=39.11 E-value=13 Score=24.81 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=6.5
Q ss_pred CCCCCCCC
Q 035391 19 EKGVFPLD 26 (66)
Q Consensus 19 erGsFPLD 26 (66)
-||+|||.
T Consensus 11 mrg~FPLn 18 (103)
T PF15628_consen 11 MRGSFPLN 18 (103)
T ss_pred hCCccccC
Confidence 58999984
No 27
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=38.16 E-value=50 Score=20.59 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=23.4
Q ss_pred cccchHHHHHHHHHHHHcC-----CCChhHHHHHHHHhhc
Q 035391 28 MHQCDLEKKDYIGCLKSSG-----HQSENCRIFSKKYLEC 62 (66)
Q Consensus 28 ~geCk~~m~~Y~~CLk~~~-----~~~~~CR~lak~YL~C 62 (66)
-|-||.....+-.|..+.. ....+|+...-.--.|
T Consensus 11 gG~Cke~F~awe~C~~ea~~~~~~d~v~kC~e~~~~L~kC 50 (76)
T PF07802_consen 11 GGGCKESFTAWEDCVDEAEKNKEEDFVEKCFEATAALRKC 50 (76)
T ss_pred CCChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 4789999999999996542 2236888654433333
No 28
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=32.09 E-value=19 Score=29.04 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=13.9
Q ss_pred CccCC------CCCCCCCCCCcc
Q 035391 13 ARPVP------PEKGVFPLDHMH 29 (66)
Q Consensus 13 ~~p~p------PerGsFPLDH~g 29 (66)
+|||+ =|+++||-||+.
T Consensus 149 yKPTekR~KILlE~kaFPSDhYA 171 (465)
T KOG3846|consen 149 YKPTEKRFKILLEKKAFPSDHYA 171 (465)
T ss_pred cCCcchhhhhhhccCCCCchHHH
Confidence 56776 689999999974
No 29
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=31.54 E-value=19 Score=28.33 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=11.0
Q ss_pred HcCCCChhHHHHHHHHhhc
Q 035391 44 SSGHQSENCRIFSKKYLEC 62 (66)
Q Consensus 44 ~~~~~~~~CR~lak~YL~C 62 (66)
+|..-+..||.--|+|.+|
T Consensus 298 KNREAARECRRKKKEYVKC 316 (348)
T KOG3584|consen 298 KNREAARECRRKKKEYVKC 316 (348)
T ss_pred hhHHHHHHHHHhHhHHHHH
Confidence 3444455666666666666
No 30
>KOG3496 consensus Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17 [Posttranslational modification, protein turnover, chaperones]
Probab=31.09 E-value=47 Score=20.94 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=17.6
Q ss_pred cccchHHHHHHHHHHHHcCCC
Q 035391 28 MHQCDLEKKDYIGCLKSSGHQ 48 (66)
Q Consensus 28 ~geCk~~m~~Y~~CLk~~~~~ 48 (66)
+..|+..++.|-.|||..|.+
T Consensus 51 ee~C~~lIEahk~CMr~~GF~ 71 (72)
T KOG3496|consen 51 EEKCGKLIEAHKECMRAYGFE 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 356999999999999988764
No 31
>KOG3468 consensus NADH:ubiquinone oxidoreductase, NDUFB7/B18 subunit [Energy production and conversion]
Probab=29.66 E-value=27 Score=24.05 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=32.2
Q ss_pred CCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 035391 24 PLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (66)
Q Consensus 24 PLDH~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CR 63 (66)
+|----.|-...+.|++|-+.+--+.-+|-.+--+|..|-
T Consensus 50 ~l~~RDyCAH~lI~l~kCr~~~fp~~~kC~~erh~~dkCE 89 (128)
T KOG3468|consen 50 ALGSRDYCAHLLIPLNKCRQDEFPFPWKCEDERHVYDKCE 89 (128)
T ss_pred CcchHHHHHHHHHHHHHhhcccCCcchhccccccchhhhh
Confidence 3444456888888999999998888899999999999884
No 32
>KOG2966 consensus Uncharacterized conserved protein [General function prediction only]
Probab=26.40 E-value=37 Score=26.59 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=18.4
Q ss_pred CCCccCCCCCCCCCCCCcccch
Q 035391 11 RGARPVPPEKGVFPLDHMHQCD 32 (66)
Q Consensus 11 ~~~~p~pPerGsFPLDH~geCk 32 (66)
..+-|++|.++.++|||+|+--
T Consensus 130 ~~~d~~~~k~~a~~~d~~g~v~ 151 (325)
T KOG2966|consen 130 LSYDVSQPKRIAKSLDHSGNVI 151 (325)
T ss_pred cccCCCccccccccccccceee
Confidence 3567899999999999998644
No 33
>KOG4148 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.78 E-value=42 Score=22.47 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.0
Q ss_pred CcccchHHHHHHHHHHHHcCCCC
Q 035391 27 HMHQCDLEKKDYIGCLKSSGHQS 49 (66)
Q Consensus 27 H~geCk~~m~~Y~~CLk~~~~~~ 49 (66)
-||+|-.+..+--+||+....|+
T Consensus 32 fFG~CN~~k~eL~kCLk~~~~nn 54 (106)
T KOG4148|consen 32 FFGYCNDVKRELRKCLKNEYVNN 54 (106)
T ss_pred HHHhhccHHHHHHHHHHHHHhhh
Confidence 48999999999999999884433
No 34
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=24.29 E-value=82 Score=19.89 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHH
Q 035391 33 LEKKDYIGCLKSSGHQSENCRIFSKKY 59 (66)
Q Consensus 33 ~~m~~Y~~CLk~~~~~~~~CR~lak~Y 59 (66)
..+.+|+.||-..+ .|-..++++
T Consensus 18 rl~~~y~~Clldkg----pCt~~~~~l 40 (95)
T PF03392_consen 18 RLLKSYIDCLLDKG----PCTPEGKEL 40 (95)
T ss_dssp HHHHHHHHHHTSSS----TSHHHHHHH
T ss_pred HHHHHHHHHHhcCC----CCCHHHHHH
Confidence 35678899987665 676666554
No 35
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.69 E-value=66 Score=23.69 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=15.1
Q ss_pred CCCChhHHHHHHHHhhcc
Q 035391 46 GHQSENCRIFSKKYLECR 63 (66)
Q Consensus 46 ~~~~~~CR~lak~YL~CR 63 (66)
..|+..||.|||...+-|
T Consensus 51 ~GnndAcr~LAKQLV~lR 68 (208)
T KOG3231|consen 51 IGNNDACRVLAKQLVHLR 68 (208)
T ss_pred ccCcHHHHHHHHHHHHHH
Confidence 578889999999987765
No 36
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=23.20 E-value=1.6e+02 Score=19.77 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHhh
Q 035391 35 KKDYIGCLKSSGHQSENCRIFSKKYLE 61 (66)
Q Consensus 35 m~~Y~~CLk~~~~~~~~CR~lak~YL~ 61 (66)
..-|-++++. .+...||..||+|++
T Consensus 10 ~~yy~~~F~~--lqQ~~Ck~IAKawIK 34 (126)
T PF11001_consen 10 RAYYESAFKA--LQQVNCKQIAKAWIK 34 (126)
T ss_pred HHHHHHHHHH--cChhHHHHHHHHHHH
Confidence 3445555554 445689999999975
No 37
>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=22.61 E-value=23 Score=26.38 Aligned_cols=15 Identities=27% Similarity=0.795 Sum_probs=10.9
Q ss_pred hHHHHHHHHhhcccC
Q 035391 51 NCRIFSKKYLECRMA 65 (66)
Q Consensus 51 ~CR~lak~YL~CRMd 65 (66)
.=+=+-++||.||..
T Consensus 86 RvkfvlrSYlRcRL~ 100 (223)
T KOG3176|consen 86 RVKFVLRSYLRCRLQ 100 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344567899999964
No 38
>COG4371 Predicted membrane protein [Function unknown]
Probab=22.36 E-value=83 Score=24.64 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCccCCCCCCCC
Q 035391 2 SAGGAFGGNRGARPVPPEKGVF 23 (66)
Q Consensus 2 s~g~p~~~~~~~~p~pPerGsF 23 (66)
||++|++-++.+.|..|.-|+|
T Consensus 57 Sfraps~~sr~YS~~gpsGGgY 78 (334)
T COG4371 57 SFRAPSGYSRGYSGGGPSGGGY 78 (334)
T ss_pred CCCCCCCCCCCcCCCCCCCCCC
Confidence 7888998889999999888875
No 39
>PF01523 PmbA_TldD: Putative modulator of DNA gyrase; InterPro: IPR002510 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to MEROPS peptidase family U62 (clan U-). The type example is microcin-processing peptidase 1 from Escherichia coli, which is the product of the gene PmbA. It has been suggests that the pmbA gene product acts to inhibit the interaction between the letD protein and the A subunit of DNA gyrase. The letA (ccdA) and letD (ccdB) genes of the F plasmid, located just outside the sequence essential for F-plasmid replication, contribute to stable maintenance of the plasmid in E. coli cells. The letD gene product acts to inhibit partitioning of chromosomal DNA and cell division by inhibiting DNA gyrase activity, whereas the letA gene product acts to reverse the inhibitory activity of the letD gene product []. It has also been proposed that PmbA facilitates the secretion of microcin B17 (MccB17) the by completing its maturation []. Microcin B17 (MccB17) is a peptide antibiotic produced by E. coli strains harbouring plasmid pMccB17. ; PDB: 1VPB_A 1VL4_A 3TV9_A 3QTD_B.
Probab=21.57 E-value=52 Score=22.81 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=10.6
Q ss_pred cC-CCCCCCCCCCCcccch
Q 035391 15 PV-PPEKGVFPLDHMHQCD 32 (66)
Q Consensus 15 p~-pPerGsFPLDH~geCk 32 (66)
|+ |+.-||+|.|++|.-.
T Consensus 261 p~~~~~~~s~~fDdEG~~~ 279 (293)
T PF01523_consen 261 PTLPGGPGSRPFDDEGVPT 279 (293)
T ss_dssp TT-TT-TT--SB-TTSBB-
T ss_pred CCCCCCCcCCCCCCCCCcC
Confidence 55 6788999999999754
No 40
>KOG4624 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.14 E-value=1.2e+02 Score=20.30 Aligned_cols=33 Identities=30% Similarity=0.620 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHHHHcCC-CChhHHHHHHHHhhc
Q 035391 30 QCDLEKKDYIGCLKSSGH-QSENCRIFSKKYLEC 62 (66)
Q Consensus 30 eCk~~m~~Y~~CLk~~~~-~~~~CR~lak~YL~C 62 (66)
+|..+...|..|-+.++. .-..||+...+.=+|
T Consensus 32 ~C~~~v~~~a~C~k~~~v~vv~TCrkq~~elk~C 65 (104)
T KOG4624|consen 32 KCSEFVQDFADCAKASGVSVVPTCRKQNSELKEC 65 (104)
T ss_pred HHHHHHHHHHHHHhcCCeeeehhhHHHHHHHHHH
Confidence 588888899999988843 446888887776555
Done!