Query 035391
Match_columns 66
No_of_seqs 101 out of 143
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ei0_A P8MTCP1; helix-turn-hel 96.5 0.0038 1.3E-07 33.6 3.7 34 30-63 2-35 (38)
2 2lql_A Coiled-coil-helix-coile 96.4 0.0015 5E-08 42.1 1.9 35 29-63 59-93 (113)
3 1hp8_A HU-P8; leukemia, cystei 96.1 0.006 2.1E-07 36.9 3.5 36 29-64 5-40 (68)
4 2lqt_A Coiled-coil-helix-coile 91.2 0.24 8.2E-06 31.0 3.6 35 29-63 14-48 (85)
5 2lql_A Coiled-coil-helix-coile 84.7 0.29 1E-05 31.2 0.9 38 25-62 8-47 (113)
6 1u96_A Cytochrome C oxidase co 77.0 1.9 6.6E-05 26.0 2.7 33 30-62 25-57 (69)
7 1u96_A Cytochrome C oxidase co 76.4 4.1 0.00014 24.6 4.0 21 29-49 45-65 (69)
8 1v54_H AED, cytochrome C oxida 71.8 7.7 0.00027 23.5 4.5 46 16-61 13-62 (85)
9 1ejp_A Syndecan-4; symmetric-p 43.9 8.7 0.0003 19.6 1.0 11 18-28 5-15 (28)
10 1pp9_H Ubiquinol-cytochrome C 42.7 22 0.00075 21.3 2.8 35 29-63 28-65 (78)
11 2l0y_B HCG2020266, COX17 cytoc 38.7 3.7 0.00013 24.6 -1.1 20 28-47 46-65 (67)
12 2dae_A KIAA0733 protein; mitog 33.2 30 0.001 21.1 2.3 20 38-57 29-49 (75)
13 3tgu_H Mitochondrial ubiquinol 30.9 29 0.00098 20.7 2.0 35 29-63 27-64 (77)
14 1cf4_B Protein (activated P21C 23.8 50 0.0017 18.2 2.0 17 8-24 2-18 (44)
15 1dtd_B Metallocarboxypeptidase 22.9 21 0.00072 20.7 0.3 28 20-59 18-45 (61)
No 1
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=96.46 E-value=0.0038 Score=33.60 Aligned_cols=34 Identities=15% Similarity=0.491 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 035391 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (66)
Q Consensus 30 eCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CR 63 (66)
-|+.+...+..||.+|+++.++|..+-..|=+|-
T Consensus 2 pC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp CSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999999888773
No 2
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=96.36 E-value=0.0015 Score=42.08 Aligned_cols=35 Identities=20% Similarity=0.597 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 035391 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CR 63 (66)
..|.+.+..|-.||+.|..+-..||..-+.+.+|-
T Consensus 59 ~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Ca 93 (113)
T 2lql_A 59 QACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCA 93 (113)
T ss_dssp HHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999984
No 3
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=96.06 E-value=0.006 Score=36.86 Aligned_cols=36 Identities=14% Similarity=0.429 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhccc
Q 035391 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRM 64 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CRM 64 (66)
.-|+.+...+..||.+|+++-++|..+-..|=+|+-
T Consensus 5 dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~ 40 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCA 40 (68)
T ss_dssp CTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999874
No 4
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=91.19 E-value=0.24 Score=31.02 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHHHhhcc
Q 035391 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~CR 63 (66)
.-|.++-..-++||.+|+.+-+.|...=.+|=+|+
T Consensus 14 nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CK 48 (85)
T 2lqt_A 14 NPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 48 (85)
T ss_dssp CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 44999999999999999999999999999999996
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=84.68 E-value=0.29 Score=31.20 Aligned_cols=38 Identities=18% Similarity=0.464 Sum_probs=26.7
Q ss_pred CCCcc-cchHHHHHHHHHHHHcC-CCChhHHHHHHHHhhc
Q 035391 25 LDHMH-QCDLEKKDYIGCLKSSG-HQSENCRIFSKKYLEC 62 (66)
Q Consensus 25 LDH~g-eCk~~m~~Y~~CLk~~~-~~~~~CR~lak~YL~C 62 (66)
++|-+ .|......||.|..+|. .+...|..+.++==.|
T Consensus 8 ~~~vak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~C 47 (113)
T 2lql_A 8 LEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQC 47 (113)
T ss_dssp ------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 45666 59999999999999884 4567888887766555
No 6
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=76.97 E-value=1.9 Score=26.01 Aligned_cols=33 Identities=39% Similarity=0.805 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHHcCCCChhHHHHHHHHhhc
Q 035391 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (66)
Q Consensus 30 eCk~~m~~Y~~CLk~~~~~~~~CR~lak~YL~C 62 (66)
.|......==.|+-.++.++.+|..+-..|.+|
T Consensus 25 aCpetK~aRDeCil~~gee~~~C~~lIeahk~C 57 (69)
T 1u96_A 25 VCKPEKEERDTCILFNGQDSEKCKEFIEKYKEC 57 (69)
T ss_dssp TSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHH
T ss_pred eCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555
No 7
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=76.44 E-value=4.1 Score=24.55 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.6
Q ss_pred ccchHHHHHHHHHHHHcCCCC
Q 035391 29 HQCDLEKKDYIGCLKSSGHQS 49 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~~~~~~ 49 (66)
.+|+..+..|-.||+..|.+-
T Consensus 45 ~~C~~lIeahk~CMr~~GF~v 65 (69)
T 1u96_A 45 EKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp GGGHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999988763
No 8
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=71.83 E-value=7.7 Score=23.55 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=35.4
Q ss_pred CCCCCCCCC-CCCcccchHHHHHHHHHHHH---cCCCChhHHHHHHHHhh
Q 035391 16 VPPEKGVFP-LDHMHQCDLEKKDYIGCLKS---SGHQSENCRIFSKKYLE 61 (66)
Q Consensus 16 ~pPerGsFP-LDH~geCk~~m~~Y~~CLk~---~~~~~~~CR~lak~YL~ 61 (66)
|+|--=.|| -.---.|=..-..|..|++. ++.+.+.|..+.+.|-+
T Consensus 13 tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~s 62 (85)
T 1v54_H 13 TAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKS 62 (85)
T ss_dssp SCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHH
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 344444577 44556788889999999655 99999999999999853
No 9
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=43.93 E-value=8.7 Score=19.60 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=8.9
Q ss_pred CCCCCCCCCCc
Q 035391 18 PEKGVFPLDHM 28 (66)
Q Consensus 18 PerGsFPLDH~ 28 (66)
=|.|||.||.-
T Consensus 5 KDEGSY~Lde~ 15 (28)
T 1ejp_A 5 KDEGSYDLGKK 15 (28)
T ss_dssp CCCCCCCCCSC
T ss_pred ccccccccCCC
Confidence 47899999963
No 10
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=42.71 E-value=22 Score=21.28 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=28.4
Q ss_pred ccchHHHHHHHHHHHHcCC---CChhHHHHHHHHhhcc
Q 035391 29 HQCDLEKKDYIGCLKSSGH---QSENCRIFSKKYLECR 63 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~~~~---~~~~CR~lak~YL~CR 63 (66)
..|...+..|-.|..+... ....|-..--+|+.|+
T Consensus 28 ~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCv 65 (78)
T 1pp9_H 28 EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4688999999999998633 3478999989999884
No 11
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=38.73 E-value=3.7 Score=24.64 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=16.3
Q ss_pred cccchHHHHHHHHHHHHcCC
Q 035391 28 MHQCDLEKKDYIGCLKSSGH 47 (66)
Q Consensus 28 ~geCk~~m~~Y~~CLk~~~~ 47 (66)
+.+|+..+..|-.||+..|.
T Consensus 46 ee~C~~lIeahk~Cmr~~GF 65 (67)
T 2l0y_B 46 EEHCGHLIEAHKESMRALGF 65 (67)
T ss_dssp -CCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 34899999999999998654
No 12
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.25 E-value=30 Score=21.10 Aligned_cols=20 Identities=15% Similarity=0.529 Sum_probs=14.3
Q ss_pred HHHHHHHcCCCChhH-HHHHH
Q 035391 38 YIGCLKSSGHQSENC-RIFSK 57 (66)
Q Consensus 38 Y~~CLk~~~~~~~~C-R~lak 57 (66)
-..|+.+|++|-..| +.|+|
T Consensus 29 Vsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 29 VSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp HHHHHTTTTSCSHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHH
Confidence 457999998888766 44444
No 13
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Probab=30.93 E-value=29 Score=20.72 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=28.4
Q ss_pred ccchHHHHHHHHHHHHcC---CCChhHHHHHHHHhhcc
Q 035391 29 HQCDLEKKDYIGCLKSSG---HQSENCRIFSKKYLECR 63 (66)
Q Consensus 29 geCk~~m~~Y~~CLk~~~---~~~~~CR~lak~YL~CR 63 (66)
..|......|-.|..+.. .....|-..--+|+.|+
T Consensus 27 ~~C~~~~~~y~~C~eRV~~~~~~~e~C~eE~Fd~~hCv 64 (77)
T 3tgu_H 27 EKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHAR 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCCCSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 358889999999999873 34568999988888884
No 14
>1cf4_B Protein (activated P21CDC42HS kinase); CDC42/ACK GTPase complex, G protein, transferase; HET: GNP; NMR {Homo sapiens}
Probab=23.76 E-value=50 Score=18.21 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=12.6
Q ss_pred CCCCCCccCCCCCCCCC
Q 035391 8 GGNRGARPVPPEKGVFP 24 (66)
Q Consensus 8 ~~~~~~~p~pPerGsFP 24 (66)
++...+....|-++||=
T Consensus 2 ~~~~~~dIS~pl~~SFi 18 (44)
T 1cf4_B 2 SGLSAQDISQPLQNSFI 18 (44)
T ss_dssp CCSSSTTCCCSCSSCCC
T ss_pred CCcCHHHccccccccce
Confidence 44556677889999985
No 15
>1dtd_B Metallocarboxypeptidase inhibitor; carboxypeptidase A2, leech carboxypeptidase inhibitor, hydrolase/hydrolase inhibitor complex; HET: GLU; 1.65A {Hirudo medicinalis} SCOP: g.30.1.1 PDB: 1dtv_A 1zfi_A 1zfl_A 2abz_C
Probab=22.92 E-value=21 Score=20.74 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred CCCCCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 035391 20 KGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKY 59 (66)
Q Consensus 20 rGsFPLDH~geCk~~m~~Y~~CLk~~~~~~~~CR~lak~Y 59 (66)
||.-||-.+|||. -.-.+.-||+-|-++
T Consensus 18 rgaaplpsegecn------------phptapwcregavew 45 (61)
T 1dtd_B 18 RGAAPLPSEGECN------------PHPTAPWCREGAVEW 45 (61)
T ss_dssp ESCCCCGGGCEEE------------ECCCCHHHHHHCCCC
T ss_pred cCCCCCCCCCccC------------CCCCCcchhcCceEE
Confidence 6889999999996 245667787766554
Done!