BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035392
(59 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M9L0|APC11_ARATH Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana
GN=APC11 PE=1 SV=2
Length = 84
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/56 (98%), Positives = 55/56 (98%)
Query: 1 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQT QAHCPMCRREWQFK
Sbjct: 28 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK 83
>sp|Q9CPX9|APC11_MOUSE Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11
PE=3 SV=1
Length = 84
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 51/56 (91%)
Query: 1 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
MAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+N+Q Q HCPMCR+EW+FK
Sbjct: 28 MAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFK 83
>sp|Q3ZCF6|APC11_BOVIN Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11
PE=3 SV=1
Length = 84
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 51/56 (91%)
Query: 1 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
MAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+N+Q Q HCPMCR+EW+FK
Sbjct: 28 MAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFK 83
>sp|Q5R8A2|APC11_PONAB Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11
PE=3 SV=1
Length = 84
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/56 (73%), Positives = 51/56 (91%)
Query: 1 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
MAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+++Q Q HCPMCR+EW+FK
Sbjct: 28 MAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFK 83
>sp|Q9NYG5|APC11_HUMAN Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11
PE=1 SV=1
Length = 84
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/56 (73%), Positives = 51/56 (91%)
Query: 1 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
MAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+++Q Q HCPMCR+EW+FK
Sbjct: 28 MAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFK 83
>sp|Q54L48|APC11_DICDI Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum
GN=anapc11 PE=3 SV=1
Length = 87
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 1 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKGSE 59
MAFDGCC DCK+PGDDCP +WG CNHAFH+HCILKW+N+ Q CPMCR EW+FK E
Sbjct: 29 MAFDGCCVDCKIPGDDCPPVWGVCNHAFHMHCILKWLNANELQ-QCPMCRSEWRFKSDE 86
>sp|Q12157|APC11_YEAST Anaphase-promoting complex subunit 11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APC11 PE=1 SV=1
Length = 165
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 2 AFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
+++G CP CK PGD CPL+ G C+H FH HCI +W+++ T + CPMCR+ +Q +
Sbjct: 47 SYNGTCPSCKFPGDQCPLVIGLCHHNFHDHCIYRWLDTPTSKGLCPMCRQTFQLQ 101
>sp|Q9UT86|APC11_SCHPO Anaphase-promoting complex subunit 11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apc11 PE=1 SV=1
Length = 94
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 1 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKGS 58
+ FDGCCP C PGD+CP++WG C H FH HCI W+ + Q CPM R+ + S
Sbjct: 29 VPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPMDRQTFVVADS 86
>sp|O13959|RBX1_SCHPO RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pip1 PE=1 SV=2
Length = 107
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Query: 7 CPDCKLPGD-----DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
C +C+ D +C + WG CNHAFH HCI +W+N++ CP+ REW+F+
Sbjct: 52 CIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNV---CPLDNREWEFQ 103
>sp|Q23457|RBX1_CAEEL RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1
Length = 110
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 15 DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
D+C + WG CNHAFH HCI +W+ ++ CP+ REW+F+
Sbjct: 68 DECTVAWGNCNHAFHFHCISRWLKTRQV---CPLDNREWEFQ 106
>sp|Q8QG64|RBX1_SALSA RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2
Length = 108
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 13 PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
++C + WG CNHAFH HCI +W+ ++ CP+ REW+F+
Sbjct: 64 TSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQ 104
>sp|P62878|RBX1_MOUSE E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1
Length = 108
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 13 PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
++C + WG CNHAFH HCI +W+ ++ CP+ REW+F+
Sbjct: 64 TSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQ 104
>sp|P62877|RBX1_HUMAN E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1
Length = 108
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 13 PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
++C + WG CNHAFH HCI +W+ ++ CP+ REW+F+
Sbjct: 64 TSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQ 104
>sp|Q9W5E1|RBX1A_DROME RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1
Length = 108
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 13 PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
++C + WG CNHAFH HCI +W+ ++ CP+ REW F+
Sbjct: 64 TSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWDFQ 104
>sp|Q54K33|RBX1_DICDI RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1
Length = 104
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 13 PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
++C + WG CNHAFH HCI +W+ S+ CP+ R+W+F+
Sbjct: 60 TSEECTVAWGICNHAFHFHCISRWLKSRQV---CPLDNRDWEFQ 100
>sp|Q940X7|RBX1A_ARATH RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1
Length = 118
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 13 PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
++C + WG CNHAFH HCI +W+ ++ CP+ EW+F+
Sbjct: 74 TSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQ 114
>sp|Q9NHX0|RBX1B_DROME RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=2 SV=2
Length = 122
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 6 CCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
C D D+C + WG CNHAFH HCI +W+ ++ CP+ +EW ++
Sbjct: 71 CQADPNANQDECTVAWGECNHAFHYHCIARWLKTRLV---CPLDNKEWVYQ 118
>sp|Q9M2B0|RBX1B_ARATH RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1
Length = 115
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 13 PGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
++C + WG CNHAFH HCI +W+ ++ CP+ EW+F+
Sbjct: 71 TSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDVCEWEFQ 111
>sp|Q08273|RBX1_YEAST RING-box protein HRT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HRT1 PE=1 SV=1
Length = 121
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 15 DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55
++C WG CNHAFHLHCI KW+ ++ CP+ + WQ
Sbjct: 79 NECVAAWGVCNHAFHLHCINKWIKTRDA---CPLDNQPWQL 116
>sp|Q5UQ40|UBC4_MIMIV Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R795 PE=3 SV=1
Length = 1297
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 17 CPLIWG-ACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKGS 58
CP+ +C+H+FH CI +W++++ CP+C EWQ G+
Sbjct: 97 CPIAQSVSCSHSFHACCISRWLHTKKT---CPLCNIEWQLIGA 136
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRR 51
C+HAFHLHCI W+ S + CP+CRR
Sbjct: 226 CSHAFHLHCIDTWLLSNST---CPLCRR 250
>sp|O74349|LTN1_SCHPO E3 ubiquitin-protein ligase listerin OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21D10.09c PE=3 SV=1
Length = 1610
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 12 LPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55
LP C G C H FH C+ KW S + CP+CR + F
Sbjct: 1571 LPNKRC----GTCRHKFHASCLYKWFKSSN-SSRCPLCRSSFTF 1609
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 7 CPDC--KLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCR 50
CP C + D+ + CNHAFH+ CI W++S T +CP+CR
Sbjct: 177 CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHT---NCPLCR 219
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 9 DCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
D KLP CP C + FH C+ KW S CP+CR E F+
Sbjct: 1519 DRKLPSKTCP----TCKNKFHGACLYKWFRSSGNNT-CPLCRSEIPFR 1561
>sp|Q9UBF6|RBX2_HUMAN RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1
Length = 113
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 15 DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREW 53
+DC ++WG CNH+FH C+ WV CP+C+++W
Sbjct: 71 EDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDW 106
>sp|Q9WTZ1|RBX2_MOUSE RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1
Length = 113
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 15 DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56
+DC ++WG CNH+FH C+ WV CP+C+++W +
Sbjct: 71 EDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDWVVQ 109
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCR 50
CNHAFHL CI W+ S + +CP+CR
Sbjct: 161 CNHAFHLPCIDTWLKSHS---NCPLCR 184
>sp|Q75DC2|ASR1_ASHGO Alcohol-sensitive RING finger protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=ASR1 PE=3 SV=1
Length = 328
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 13 PGDDCPLIWGA----------CNHAFHLHCILKWVNSQTPQAHCPMCRRE 52
P D+C + W + C H +HL CI KW + + CP+CR E
Sbjct: 14 PQDECSICWESMPSGVGRLMPCGHEYHLACIRKWFHLHSGNRSCPVCRTE 63
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRR 51
C+H +H+HCI +W++ + CP+CRR
Sbjct: 721 CSHEYHIHCIDRWLSENST---CPICRR 745
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRR 51
C+H +H+HCI +W++ + CP+CRR
Sbjct: 586 CSHEYHIHCIDRWLSENST---CPICRR 610
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 7 CPDC--KLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCR 50
CP C ++ + L+ C H FH C+ KW NS+ CP+CR
Sbjct: 240 CPVCLERMDSETTGLVTIPCQHTFHCQCLNKWKNSR-----CPVCR 280
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 2 AFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAH-CPMCRR 51
A+D C C+ P + CNH FHL C+ W++ + + CP CR+
Sbjct: 332 AYDDECAICREPMAKAKRL--HCNHLFHLGCLRSWLDQGLNEVYSCPTCRK 380
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRR 51
C+H +H+HCI +W++ + CP+CRR
Sbjct: 603 CSHEYHVHCIDRWLSENST---CPICRR 627
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRR 51
C+H +H+HCI +W++ + CP+CRR
Sbjct: 564 CSHEYHVHCIDRWLSENST---CPICRR 588
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRR 51
C+H +H+HCI +W++ + CP+CRR
Sbjct: 588 CSHEYHVHCIDRWLSENST---CPICRR 612
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCR 50
FD C+ D + C+HAFHL+CI W+ S + CP+CR
Sbjct: 141 FDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNST---CPLCR 185
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRR 51
C+H FHL CI KW+ A CP+CRR
Sbjct: 195 CHHMFHLPCIDKWLRR---HASCPLCRR 219
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCR 50
C H FHL C+++W + P CP CR
Sbjct: 25 CGHTFHLQCLIQWFET-APSRTCPQCR 50
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCR 50
CNH FH CI +W+ S Q CP+CR
Sbjct: 544 CNHFFHRECIDQWLTSS--QNSCPLCR 568
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCR 50
C H FHL C+++W + P CP CR
Sbjct: 25 CGHTFHLQCLIQWFET-APSRTCPQCR 50
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCR 50
CNHAFH+ CI W+ S + +CP+CR
Sbjct: 178 CNHAFHVPCIDTWLKSHS---NCPLCR 201
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRR 51
C H FH+HCI +W++ CP+CRR
Sbjct: 632 CLHEFHIHCIDRWLSENCT---CPVCRR 656
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCR 50
FD C+ DD + C+HAFH+ CI W+ S + CP+CR
Sbjct: 142 FDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNST---CPLCR 186
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRRE 52
C H F CI + ++S+ P A CP+CR E
Sbjct: 769 CAHVFCKPCICQVIHSEQPHAKCPLCRNE 797
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRRE-WQ 54
C+H FH HC+ W Q CP CR + WQ
Sbjct: 310 CSHVFHAHCLRSWFQRQQT---CPTCRTDIWQ 338
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAH-CPMCRR 51
+D C C+ P + CNH FHL C+ W++ + + CP CR+
Sbjct: 333 YDDECAICREPMAKAKRL--HCNHLFHLGCLRSWLDQGLNEVYSCPTCRK 380
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 7 CPDC--KLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCR 50
CP C + +D + C+HAFH+ CI W+ S + CP+CR
Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHST---CPLCR 168
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 15 DDCPLIW-GACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKGSE 59
D+ PL W C+H FH +CI +W++S++ CP+CR K +
Sbjct: 129 DEEPLRWMPPCSHTFHANCIDEWLSSRST---CPVCRANLSLKSGD 171
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 15/52 (28%)
Query: 11 KLPGDDCPLIWG------------ACNHAFHLHCILKWVNSQTPQAHCPMCR 50
K+ G DC + G CNH FH+ CI +W+ S + +CP+CR
Sbjct: 149 KINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHS---NCPLCR 197
>sp|Q9M0R6|ATL35_ARATH Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana
GN=ATL35 PE=3 SV=1
Length = 302
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 24 CNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKGSE 59
C+H FH +CI W++SQ+ CP CR K E
Sbjct: 142 CSHTFHANCIDVWLSSQST---CPACRANLSLKPGE 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.143 0.583
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,499,271
Number of Sequences: 539616
Number of extensions: 824241
Number of successful extensions: 3049
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 260
Number of HSP's that attempted gapping in prelim test: 2932
Number of HSP's gapped (non-prelim): 347
length of query: 59
length of database: 191,569,459
effective HSP length: 32
effective length of query: 27
effective length of database: 174,301,747
effective search space: 4706147169
effective search space used: 4706147169
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)