Query 035392
Match_columns 59
No_of_seqs 242 out of 1301
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 03:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecl_A Ring-box protein 2; RNF 99.8 1E-19 3.6E-24 92.4 4.1 51 4-57 15-78 (81)
2 3dpl_R Ring-box protein 1; ubi 99.8 5.9E-19 2E-23 93.8 4.9 52 4-58 37-104 (106)
3 2ecm_A Ring finger and CHY zin 99.7 8.4E-18 2.9E-22 79.3 4.9 49 3-54 4-54 (55)
4 1v87_A Deltex protein 2; ring- 99.7 6.8E-18 2.3E-22 89.7 4.8 55 4-58 25-97 (114)
5 2kiz_A E3 ubiquitin-protein li 99.7 2.7E-17 9.3E-22 80.7 6.1 50 4-56 14-64 (69)
6 1iym_A EL5; ring-H2 finger, ub 99.7 7.5E-18 2.5E-22 79.6 3.8 50 2-54 3-54 (55)
7 2ep4_A Ring finger protein 24; 99.7 1.6E-17 5.5E-22 82.5 5.1 50 3-55 14-64 (74)
8 1x4j_A Ring finger protein 38; 99.7 6.6E-18 2.3E-22 84.2 3.3 51 4-57 23-74 (75)
9 2djb_A Polycomb group ring fin 99.7 3.3E-17 1.1E-21 81.2 5.4 50 4-57 15-64 (72)
10 2ect_A Ring finger protein 126 99.7 2.1E-17 7.2E-22 82.8 4.3 51 4-57 15-66 (78)
11 3ng2_A RNF4, snurf, ring finge 99.7 2E-17 7E-22 81.3 3.6 51 4-57 10-65 (71)
12 2l0b_A E3 ubiquitin-protein li 99.7 2.5E-17 8.7E-22 85.0 4.0 49 4-55 40-89 (91)
13 4a0k_B E3 ubiquitin-protein li 99.7 2.5E-18 8.7E-23 92.8 0.1 51 4-57 48-114 (117)
14 2ea6_A Ring finger protein 4; 99.7 2E-17 6.8E-22 80.8 2.9 49 4-55 15-68 (69)
15 2ct2_A Tripartite motif protei 99.7 2.1E-16 7.2E-21 80.3 6.5 54 4-57 15-70 (88)
16 2xeu_A Ring finger protein 4; 99.7 3.3E-17 1.1E-21 79.0 3.3 51 4-57 3-58 (64)
17 1chc_A Equine herpes virus-1 r 99.7 9.8E-17 3.3E-21 78.5 4.5 49 3-55 4-52 (68)
18 2ecn_A Ring finger protein 141 99.6 5.3E-17 1.8E-21 79.9 1.6 48 4-57 15-62 (70)
19 2ysl_A Tripartite motif-contai 99.6 2.2E-16 7.5E-21 78.0 3.9 53 4-58 20-72 (73)
20 2d8s_A Cellular modulator of i 99.6 3.5E-16 1.2E-20 79.6 4.5 52 4-57 15-72 (80)
21 1g25_A CDK-activating kinase a 99.6 2.9E-16 9.9E-21 76.4 3.6 52 4-57 3-57 (65)
22 3lrq_A E3 ubiquitin-protein li 99.6 3.8E-16 1.3E-20 81.7 4.1 51 4-57 22-72 (100)
23 2ecy_A TNF receptor-associated 99.6 7.1E-16 2.4E-20 75.2 4.2 50 4-57 15-64 (66)
24 4ayc_A E3 ubiquitin-protein li 99.6 4.2E-16 1.4E-20 85.4 2.7 47 4-55 53-99 (138)
25 2csy_A Zinc finger protein 183 99.6 2.8E-15 9.5E-20 75.6 5.5 46 4-54 15-60 (81)
26 2d8t_A Dactylidin, ring finger 99.6 3.7E-16 1.3E-20 77.2 1.9 48 4-56 15-62 (71)
27 1t1h_A Gspef-atpub14, armadill 99.6 1.5E-15 5.2E-20 75.9 4.2 51 2-56 6-56 (78)
28 2y43_A E3 ubiquitin-protein li 99.6 1.1E-15 3.6E-20 79.6 3.7 49 4-56 22-70 (99)
29 2yur_A Retinoblastoma-binding 99.6 1.3E-15 4.6E-20 75.8 3.9 50 4-56 15-65 (74)
30 2ckl_A Polycomb group ring fin 99.6 2.5E-15 8.7E-20 79.2 4.1 49 4-56 15-63 (108)
31 1e4u_A Transcriptional repress 99.6 4E-15 1.4E-19 75.3 4.3 52 4-57 11-64 (78)
32 2ysj_A Tripartite motif-contai 99.6 5.1E-15 1.8E-19 71.4 4.5 44 4-49 20-63 (63)
33 2ecw_A Tripartite motif-contai 99.6 5.8E-15 2E-19 74.2 4.8 51 4-56 19-72 (85)
34 4ap4_A E3 ubiquitin ligase RNF 99.6 1.5E-15 5.3E-20 81.5 2.7 50 4-56 7-61 (133)
35 2ct0_A Non-SMC element 1 homol 99.5 4E-15 1.4E-19 74.8 3.8 52 5-58 16-67 (74)
36 2ecv_A Tripartite motif-contai 99.5 1E-14 3.5E-19 73.3 4.6 52 4-57 19-73 (85)
37 1jm7_A BRCA1, breast cancer ty 99.5 7.7E-15 2.6E-19 77.3 3.8 51 4-56 21-71 (112)
38 2ecj_A Tripartite motif-contai 99.5 1.6E-14 5.4E-19 68.4 4.1 44 4-49 15-58 (58)
39 3ztg_A E3 ubiquitin-protein li 99.5 1.3E-14 4.3E-19 74.5 4.1 49 3-54 12-61 (92)
40 2egp_A Tripartite motif-contai 99.5 1.7E-15 5.7E-20 75.7 0.7 52 3-56 11-66 (79)
41 2ckl_B Ubiquitin ligase protei 99.5 1.5E-14 5.3E-19 80.9 4.6 48 5-55 55-102 (165)
42 3fl2_A E3 ubiquitin-protein li 99.5 1.1E-14 3.7E-19 78.3 3.2 48 4-55 52-99 (124)
43 3hct_A TNF receptor-associated 99.5 2.5E-14 8.5E-19 76.5 4.0 49 4-56 18-66 (118)
44 4ap4_A E3 ubiquitin ligase RNF 99.5 1.4E-14 4.8E-19 77.7 2.9 51 4-57 72-127 (133)
45 1rmd_A RAG1; V(D)J recombinati 99.5 2.9E-14 9.8E-19 75.9 3.2 50 4-57 23-72 (116)
46 2vje_A E3 ubiquitin-protein li 99.4 5.8E-14 2E-18 68.4 3.2 48 4-54 8-56 (64)
47 1z6u_A NP95-like ring finger p 99.4 6.9E-14 2.4E-18 77.7 3.4 49 4-56 78-126 (150)
48 2vje_B MDM4 protein; proto-onc 99.4 7.3E-14 2.5E-18 67.9 2.8 49 3-54 6-55 (63)
49 2kr4_A Ubiquitin conjugation f 99.4 1.9E-13 6.6E-18 69.8 4.2 50 2-56 12-61 (85)
50 3knv_A TNF receptor-associated 99.4 7.7E-14 2.6E-18 76.9 2.1 48 4-55 31-78 (141)
51 1jm7_B BARD1, BRCA1-associated 99.4 8.7E-14 3E-18 74.3 1.5 47 4-56 22-68 (117)
52 3l11_A E3 ubiquitin-protein li 99.4 2.7E-14 9.2E-19 75.9 -0.6 48 4-55 15-62 (115)
53 2kre_A Ubiquitin conjugation f 99.4 3.3E-13 1.1E-17 70.8 3.4 50 2-56 27-76 (100)
54 1wgm_A Ubiquitin conjugation f 99.4 4.8E-13 1.6E-17 70.0 3.6 50 2-56 20-70 (98)
55 3hcs_A TNF receptor-associated 99.3 9.4E-13 3.2E-17 73.8 4.2 49 4-56 18-66 (170)
56 2yu4_A E3 SUMO-protein ligase 99.3 3.6E-12 1.2E-16 66.0 4.9 51 3-54 6-62 (94)
57 2c2l_A CHIP, carboxy terminus 99.3 2.1E-12 7.1E-17 76.0 3.7 51 2-56 206-256 (281)
58 2y1n_A E3 ubiquitin-protein li 99.3 2.6E-12 8.7E-17 80.4 4.2 48 5-56 333-380 (389)
59 1bor_A Transcription factor PM 99.3 6.4E-13 2.2E-17 63.1 1.0 46 4-57 6-51 (56)
60 4ic3_A E3 ubiquitin-protein li 99.2 2.1E-12 7.2E-17 64.3 1.4 43 4-55 24-67 (74)
61 3htk_C E3 SUMO-protein ligase 99.2 1.1E-11 3.7E-16 74.4 3.4 52 3-56 180-233 (267)
62 1vyx_A ORF K3, K3RING; zinc-bi 99.2 1.9E-11 6.4E-16 59.0 3.3 50 4-56 6-60 (60)
63 2f42_A STIP1 homology and U-bo 99.1 3.8E-11 1.3E-15 68.6 3.8 51 2-56 104-154 (179)
64 1wim_A KIAA0161 protein; ring 99.1 5.6E-11 1.9E-15 61.2 2.4 49 4-52 5-61 (94)
65 2ecg_A Baculoviral IAP repeat- 99.1 1.7E-10 5.8E-15 57.3 3.7 42 5-55 26-68 (75)
66 3k1l_B Fancl; UBC, ring, RWD, 99.0 4.1E-11 1.4E-15 74.4 1.5 51 5-55 309-373 (381)
67 2yho_A E3 ubiquitin-protein li 99.0 9E-11 3.1E-15 59.1 1.1 43 4-55 18-61 (79)
68 2ea5_A Cell growth regulator w 98.9 4.3E-10 1.5E-14 55.2 2.5 43 4-55 15-58 (68)
69 2bay_A PRE-mRNA splicing facto 98.9 1.2E-09 4.3E-14 52.6 3.4 50 4-57 3-52 (61)
70 3vk6_A E3 ubiquitin-protein li 98.9 2.5E-09 8.4E-14 56.1 3.7 47 6-55 3-49 (101)
71 3t6p_A Baculoviral IAP repeat- 98.8 7E-10 2.4E-14 68.5 0.4 43 4-55 295-338 (345)
72 3nw0_A Non-structural maintena 98.7 2.5E-08 8.7E-13 58.9 4.5 52 5-58 181-232 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 97.3 0.00025 8.4E-09 36.3 3.5 34 3-36 2-36 (101)
74 2ko5_A Ring finger protein Z; 96.5 0.00086 2.9E-08 34.8 1.2 43 6-55 30-73 (99)
75 2lri_C Autoimmune regulator; Z 96.5 0.003 1E-07 30.5 3.0 50 4-55 12-62 (66)
76 1wil_A KIAA1045 protein; ring 96.0 0.0082 2.8E-07 30.5 3.1 35 2-36 13-47 (89)
77 2k16_A Transcription initiatio 95.2 0.0043 1.5E-07 30.3 0.4 51 6-56 20-72 (75)
78 1f62_A Transcription factor WS 95.1 0.013 4.6E-07 26.4 2.0 46 6-51 2-49 (51)
79 2l5u_A Chromodomain-helicase-D 94.4 0.019 6.4E-07 27.1 1.5 47 4-52 11-58 (61)
80 2lbm_A Transcriptional regulat 94.2 0.087 3E-06 28.9 4.0 47 3-51 62-116 (142)
81 1weu_A Inhibitor of growth fam 93.9 0.015 5.3E-07 29.7 0.7 47 6-55 38-88 (91)
82 2ysm_A Myeloid/lymphoid or mix 93.8 0.014 4.8E-07 30.3 0.4 36 3-38 6-42 (111)
83 1wen_A Inhibitor of growth fam 93.8 0.016 5.3E-07 28.3 0.5 48 5-55 17-68 (71)
84 1weo_A Cellulose synthase, cat 93.5 0.28 9.7E-06 25.1 4.9 49 5-55 17-70 (93)
85 2yt5_A Metal-response element- 93.4 0.0056 1.9E-07 29.1 -1.5 51 4-54 6-63 (66)
86 1wev_A Riken cDNA 1110020M19; 93.1 0.0057 1.9E-07 31.0 -1.8 52 4-55 16-75 (88)
87 3v43_A Histone acetyltransfera 93.1 0.36 1.2E-05 25.0 5.2 32 3-34 4-42 (112)
88 2puy_A PHD finger protein 21A; 92.8 0.0063 2.2E-07 28.6 -1.8 50 3-54 4-54 (60)
89 1fp0_A KAP-1 corepressor; PHD 92.6 0.035 1.2E-06 28.2 0.8 50 4-55 25-75 (88)
90 3ql9_A Transcriptional regulat 92.3 0.35 1.2E-05 26.1 4.5 47 3-51 56-110 (129)
91 3o36_A Transcription intermedi 92.1 0.023 7.9E-07 31.9 -0.3 49 3-53 3-52 (184)
92 2l43_A N-teminal domain from h 91.9 0.019 6.6E-07 29.0 -0.7 52 4-56 25-79 (88)
93 1mm2_A MI2-beta; PHD, zinc fin 91.6 0.025 8.4E-07 26.7 -0.5 47 4-52 9-56 (61)
94 3c6w_A P28ING5, inhibitor of g 90.5 0.015 5.3E-07 27.3 -1.8 43 6-51 11-57 (59)
95 1xwh_A Autoimmune regulator; P 90.5 0.028 9.5E-07 26.8 -0.9 47 4-52 8-55 (66)
96 1we9_A PHD finger family prote 90.3 0.098 3.3E-06 24.5 1.0 50 4-53 6-59 (64)
97 2vpb_A Hpygo1, pygopus homolog 90.1 0.29 1E-05 23.3 2.6 32 4-35 8-42 (65)
98 3o70_A PHD finger protein 13; 90.1 0.023 7.9E-07 27.4 -1.4 45 6-51 21-66 (68)
99 2vnf_A ING 4, P29ING4, inhibit 89.7 0.019 6.4E-07 27.0 -1.9 43 6-51 12-58 (60)
100 1wyh_A SLIM 2, skeletal muscle 89.7 0.56 1.9E-05 21.8 3.4 41 3-54 4-44 (72)
101 3m62_A Ubiquitin conjugation f 89.3 0.5 1.7E-05 33.0 4.1 50 2-56 889-939 (968)
102 3u5n_A E3 ubiquitin-protein li 89.1 0.031 1E-06 32.0 -1.6 47 4-52 7-54 (207)
103 2ku3_A Bromodomain-containing 89.1 0.39 1.3E-05 23.2 2.6 48 4-52 16-66 (71)
104 3o7a_A PHD finger protein 13 v 89.0 0.058 2E-06 24.5 -0.4 49 3-51 2-51 (52)
105 3shb_A E3 ubiquitin-protein li 88.8 0.028 9.5E-07 27.8 -1.7 46 6-51 28-76 (77)
106 1wem_A Death associated transc 88.7 0.12 4E-06 25.1 0.6 48 6-54 18-72 (76)
107 2lv9_A Histone-lysine N-methyl 88.6 0.057 2E-06 27.7 -0.6 45 6-51 30-75 (98)
108 1wep_A PHF8; structural genomi 88.2 0.57 1.9E-05 22.8 2.9 47 6-53 14-64 (79)
109 2ro1_A Transcription intermedi 87.2 0.15 5.1E-06 28.9 0.5 48 4-53 2-50 (189)
110 2cs3_A Protein C14ORF4, MY039 87.1 0.72 2.5E-05 23.3 2.9 36 5-40 16-53 (93)
111 3i2d_A E3 SUMO-protein ligase 86.8 1.3 4.4E-05 27.8 4.5 51 5-57 250-302 (371)
112 2o35_A Hypothetical protein DU 86.8 0.35 1.2E-05 25.2 1.7 12 28-39 43-54 (105)
113 3fyb_A Protein of unknown func 86.7 0.36 1.2E-05 25.1 1.7 12 28-39 42-53 (104)
114 2g6q_A Inhibitor of growth pro 86.6 0.042 1.4E-06 26.0 -1.8 44 6-52 13-60 (62)
115 1x68_A FHL5 protein; four-and- 86.5 0.62 2.1E-05 22.0 2.5 41 3-54 4-46 (76)
116 2kwj_A Zinc finger protein DPF 86.3 0.34 1.2E-05 25.3 1.5 33 4-36 1-41 (114)
117 3asl_A E3 ubiquitin-protein li 86.3 0.073 2.5E-06 25.7 -1.0 47 6-52 20-69 (70)
118 2xb1_A Pygopus homolog 2, B-ce 86.3 0.26 8.9E-06 25.5 1.1 51 5-55 4-64 (105)
119 2e6s_A E3 ubiquitin-protein li 86.3 0.1 3.6E-06 25.7 -0.5 47 5-51 27-76 (77)
120 1x63_A Skeletal muscle LIM-pro 86.0 1.2 4.1E-05 21.2 3.4 41 4-55 15-55 (82)
121 1x61_A Thyroid receptor intera 86.0 0.88 3E-05 21.1 2.8 41 3-54 4-44 (72)
122 1x4k_A Skeletal muscle LIM-pro 85.6 0.56 1.9E-05 21.8 2.0 41 3-54 4-44 (72)
123 2yql_A PHD finger protein 21A; 85.5 0.24 8.2E-06 22.6 0.6 46 4-51 9-55 (56)
124 2kgg_A Histone demethylase jar 85.2 0.19 6.6E-06 22.7 0.2 45 6-50 4-52 (52)
125 4fo9_A E3 SUMO-protein ligase 85.2 1.7 5.8E-05 27.2 4.5 51 5-57 216-268 (360)
126 1z60_A TFIIH basal transcripti 84.6 0.45 1.5E-05 22.4 1.3 41 6-49 17-58 (59)
127 1x4l_A Skeletal muscle LIM-pro 84.2 1.1 3.6E-05 20.9 2.7 40 3-54 4-46 (72)
128 2gmg_A Hypothetical protein PF 83.3 0.56 1.9E-05 24.6 1.5 27 21-55 70-96 (105)
129 2ri7_A Nucleosome-remodeling f 82.8 0.3 1E-05 26.9 0.4 47 5-52 9-59 (174)
130 3f6q_B LIM and senescent cell 82.3 1.2 4.1E-05 20.4 2.4 41 3-54 10-50 (72)
131 3ask_A E3 ubiquitin-protein li 82.1 0.28 9.5E-06 28.9 0.1 47 6-52 176-225 (226)
132 2d8z_A Four and A half LIM dom 81.5 1.5 5E-05 20.2 2.5 39 3-54 4-42 (70)
133 1wig_A KIAA1808 protein; LIM d 81.2 1.7 5.7E-05 20.5 2.7 39 3-54 4-42 (73)
134 1x64_A Alpha-actinin-2 associa 80.9 2.7 9.4E-05 20.3 3.5 37 5-54 26-62 (89)
135 3a1b_A DNA (cytosine-5)-methyl 80.8 1.2 4.1E-05 24.9 2.3 35 3-39 78-114 (159)
136 1x62_A C-terminal LIM domain p 80.5 2.1 7.1E-05 20.3 3.0 38 4-54 15-52 (79)
137 3lqh_A Histone-lysine N-methyl 80.4 0.6 2E-05 26.5 1.0 49 5-53 3-64 (183)
138 1g47_A Pinch protein; LIM doma 79.8 1 3.6E-05 21.1 1.7 38 4-54 11-50 (77)
139 2ehe_A Four and A half LIM dom 79.7 2.1 7.2E-05 20.3 2.8 39 4-54 15-54 (82)
140 2egq_A FHL1 protein; LIM domai 79.7 1.5 5.3E-05 20.5 2.3 40 4-54 15-57 (77)
141 2cur_A Skeletal muscle LIM-pro 79.5 1.5 5.1E-05 20.2 2.2 38 4-54 5-42 (69)
142 1iml_A CRIP, cysteine rich int 79.4 0.95 3.2E-05 21.3 1.5 8 25-32 20-27 (76)
143 2cu8_A Cysteine-rich protein 2 79.3 1.5 5.2E-05 20.6 2.2 39 4-54 9-47 (76)
144 2cuq_A Four and A half LIM dom 79.0 3 0.0001 19.6 3.3 38 4-54 15-52 (80)
145 2jmo_A Parkin; IBR, E3 ligase, 78.8 0.082 2.8E-06 26.1 -2.6 16 23-38 55-70 (80)
146 2pv0_B DNA (cytosine-5)-methyl 78.8 2.2 7.5E-05 26.9 3.3 33 3-37 92-126 (386)
147 2lq6_A Bromodomain-containing 78.3 2.9 0.0001 20.8 3.1 34 3-36 16-51 (87)
148 1v6g_A Actin binding LIM prote 77.8 1.9 6.6E-05 20.4 2.3 38 4-54 15-52 (81)
149 1x6a_A LIMK-2, LIM domain kina 77.7 2 6.9E-05 20.3 2.4 38 4-54 15-52 (81)
150 2d8y_A Eplin protein; LIM doma 77.5 3.3 0.00011 20.1 3.2 39 4-54 15-53 (91)
151 2pk7_A Uncharacterized protein 77.4 0.5 1.7E-05 22.8 0.1 11 45-55 28-38 (69)
152 1nyp_A Pinch protein; LIM doma 76.9 1.9 6.4E-05 19.6 2.1 39 3-54 4-42 (66)
153 1wew_A DNA-binding family prot 76.2 2.2 7.4E-05 20.6 2.3 47 6-53 18-73 (78)
154 1wd2_A Ariadne-1 protein homol 75.8 0.61 2.1E-05 21.8 0.2 14 44-57 7-20 (60)
155 2dlo_A Thyroid receptor-intera 75.7 2 6.8E-05 20.4 2.0 38 4-54 15-52 (81)
156 1x3h_A Leupaxin; paxillin fami 75.4 2.5 8.4E-05 19.9 2.3 38 5-55 16-53 (80)
157 2e6r_A Jumonji/ARID domain-con 75.2 0.45 1.5E-05 24.0 -0.4 49 4-52 16-66 (92)
158 2d8x_A Protein pinch; LIM doma 74.5 2.4 8.3E-05 19.4 2.1 38 4-54 5-42 (70)
159 4gne_A Histone-lysine N-methyl 74.4 1.1 3.9E-05 23.3 1.0 43 4-50 15-60 (107)
160 2cor_A Pinch protein; LIM doma 74.1 2.9 0.0001 19.8 2.4 37 5-54 16-52 (79)
161 2dar_A PDZ and LIM domain prot 74.0 1.7 5.7E-05 21.2 1.5 37 5-54 26-62 (90)
162 2l3k_A Rhombotin-2, linker, LI 71.5 2.9 0.0001 21.6 2.2 37 6-53 10-46 (123)
163 2cup_A Skeletal muscle LIM-pro 71.1 3.5 0.00012 20.2 2.4 11 44-54 67-77 (101)
164 2jny_A Uncharacterized BCR; st 69.6 0.54 1.8E-05 22.6 -0.9 11 45-55 30-40 (67)
165 2jmi_A Protein YNG1, ING1 homo 68.7 1.2 4.1E-05 22.5 0.3 43 6-51 28-75 (90)
166 2co8_A NEDD9 interacting prote 67.7 4.6 0.00016 19.3 2.3 38 5-54 16-53 (82)
167 1zfo_A LAsp-1; LIM domain, zin 67.2 1.6 5.5E-05 17.5 0.5 29 4-33 3-31 (31)
168 2zet_C Melanophilin; complex, 65.6 3.6 0.00012 22.6 1.8 30 4-33 68-100 (153)
169 3mjh_B Early endosome antigen 65.5 1.9 6.5E-05 18.0 0.5 11 44-54 6-16 (34)
170 2jr6_A UPF0434 protein NMA0874 63.7 2.7 9.1E-05 20.1 0.9 14 44-57 9-22 (68)
171 2dj7_A Actin-binding LIM prote 63.6 6.6 0.00023 18.7 2.4 38 4-54 15-53 (80)
172 2hf1_A Tetraacyldisaccharide-1 63.4 2.7 9.1E-05 20.1 0.9 14 44-57 9-22 (68)
173 2rgt_A Fusion of LIM/homeobox 63.2 4.5 0.00015 21.9 1.9 11 25-35 52-62 (169)
174 2jvx_A NF-kappa-B essential mo 62.8 2.1 7.1E-05 17.1 0.4 11 44-54 4-14 (28)
175 2l4z_A DNA endonuclease RBBP8, 62.0 5.4 0.00018 20.7 2.0 38 5-54 62-99 (123)
176 1zbd_B Rabphilin-3A; G protein 61.4 3.4 0.00012 22.2 1.2 31 4-34 55-88 (134)
177 2js4_A UPF0434 protein BB2007; 61.0 2.9 9.8E-05 20.1 0.8 14 44-57 9-22 (70)
178 1vfy_A Phosphatidylinositol-3- 59.7 6.7 0.00023 18.6 2.0 32 4-35 11-44 (73)
179 2ct7_A Ring finger protein 31; 59.4 0.53 1.8E-05 23.3 -2.1 19 18-36 43-61 (86)
180 2iyb_E Testin, TESS, TES; LIM 58.6 3 0.0001 19.0 0.6 37 5-54 3-43 (65)
181 1a7i_A QCRP2 (LIM1); LIM domai 57.6 3.1 0.0001 19.7 0.6 39 4-54 7-45 (81)
182 1joc_A EEA1, early endosomal a 56.4 7.9 0.00027 20.4 2.1 31 5-35 70-102 (125)
183 2jtn_A LIM domain-binding prot 54.9 6 0.00021 21.7 1.5 9 25-33 106-114 (182)
184 2xqn_T Testin, TESS; metal-bin 54.2 7.8 0.00027 19.7 1.8 43 6-54 32-74 (126)
185 1m3v_A FLIN4, fusion of the LI 54.2 12 0.00041 19.1 2.6 10 45-54 71-80 (122)
186 2xjy_A Rhombotin-2; oncoprotei 53.3 5.5 0.00019 20.5 1.2 27 25-54 51-77 (131)
187 2jrp_A Putative cytoplasmic pr 52.9 0.21 7E-06 25.1 -4.2 10 4-13 2-11 (81)
188 2kpi_A Uncharacterized protein 52.6 4.4 0.00015 18.6 0.6 13 44-56 11-23 (56)
189 1dvp_A HRS, hepatocyte growth 51.8 7.5 0.00026 22.1 1.6 32 4-35 161-194 (220)
190 1rut_X Flinc4, fusion protein 51.7 6 0.00021 21.8 1.2 9 24-32 89-97 (188)
191 3t7l_A Zinc finger FYVE domain 51.0 12 0.0004 18.5 2.1 32 5-36 21-54 (90)
192 2uzg_A Ubiquitin carboxyl-term 50.9 14 0.00046 18.6 2.4 26 4-30 25-52 (97)
193 3c5k_A HD6, histone deacetylas 49.5 15 0.00051 18.9 2.4 24 4-29 24-47 (109)
194 1x4i_A Inhibitor of growth pro 48.6 18 0.00062 17.0 2.5 43 9-53 10-56 (70)
195 1l8d_A DNA double-strand break 48.5 5 0.00017 20.3 0.5 12 44-55 48-59 (112)
196 1j2o_A FLIN2, fusion of rhombo 47.7 14 0.00047 18.6 2.1 37 6-54 5-41 (114)
197 1z2q_A LM5-1; membrane protein 46.9 14 0.00049 17.9 2.1 32 5-36 22-55 (84)
198 1wee_A PHD finger family prote 46.0 4.7 0.00016 19.0 0.2 47 6-53 18-67 (72)
199 1x4u_A Zinc finger, FYVE domai 45.6 14 0.00047 17.9 1.8 31 5-35 15-47 (84)
200 2yw8_A RUN and FYVE domain-con 43.6 13 0.00045 17.9 1.6 30 6-35 21-52 (82)
201 3zyq_A Hepatocyte growth facto 42.4 12 0.00042 21.4 1.6 33 4-36 164-198 (226)
202 2rsd_A E3 SUMO-protein ligase 41.5 8.2 0.00028 18.0 0.6 45 6-51 12-64 (68)
203 2d8v_A Zinc finger FYVE domain 41.3 14 0.00046 17.8 1.4 29 6-37 10-39 (67)
204 3pwf_A Rubrerythrin; non heme 40.7 17 0.00059 20.1 1.9 24 19-52 139-162 (170)
205 3kqi_A GRC5, PHD finger protei 40.2 21 0.00073 16.8 2.0 45 8-52 13-61 (75)
206 2a20_A Regulating synaptic mem 39.3 21 0.00071 16.8 1.8 33 4-36 9-43 (62)
207 2akl_A PHNA-like protein PA012 39.1 14 0.00047 20.1 1.3 15 44-58 28-42 (138)
208 1lv3_A Hypothetical protein YA 39.0 11 0.00038 18.1 0.9 12 44-55 10-21 (68)
209 3mpx_A FYVE, rhogef and PH dom 39.0 6.4 0.00022 24.2 0.0 50 5-54 376-431 (434)
210 2kdx_A HYPA, hydrogenase/ureas 38.0 16 0.00055 18.8 1.5 23 21-52 76-99 (119)
211 1v5n_A PDI-like hypothetical p 35.8 41 0.0014 16.5 2.8 31 5-35 48-78 (89)
212 2lcq_A Putative toxin VAPC6; P 35.5 9.5 0.00033 20.6 0.3 27 20-55 134-160 (165)
213 1vk6_A NADH pyrophosphatase; 1 33.6 28 0.00095 20.4 2.2 20 32-54 99-118 (269)
214 2ffw_A Midline-1; B-BOX, ring 33.5 43 0.0015 15.9 3.1 32 4-35 30-62 (78)
215 6rxn_A Rubredoxin; electron tr 33.1 14 0.00049 16.2 0.7 8 45-52 32-39 (46)
216 3vhs_A ATPase wrnip1; zinc fin 31.8 6.4 0.00022 15.4 -0.6 10 45-54 8-17 (29)
217 2k5r_A Uncharacterized protein 31.7 17 0.00057 18.6 0.9 13 44-56 9-21 (97)
218 2jz8_A Uncharacterized protein 30.2 18 0.00063 18.2 0.8 14 44-57 49-62 (87)
219 2i50_A Ubiquitin carboxyl-term 29.9 13 0.00045 19.6 0.3 31 22-52 5-37 (126)
220 1b8t_A Protein (CRP1); LIM dom 29.0 21 0.0007 19.6 1.0 24 7-32 118-142 (192)
221 1pft_A TFIIB, PFTFIIBN; N-term 28.9 21 0.00072 15.4 0.9 12 44-55 6-18 (50)
222 2m0e_A Zinc finger and BTB dom 28.8 25 0.00085 11.7 1.2 11 44-54 3-13 (29)
223 1znf_A 31ST zinc finger from X 28.5 21 0.00073 11.9 0.8 10 45-54 3-12 (27)
224 2jrr_A Uncharacterized protein 28.1 12 0.0004 17.9 -0.1 14 44-57 41-54 (67)
225 1wvk_A AT2G23090/F21P24.15; st 26.9 13 0.00043 18.7 -0.1 11 44-54 46-56 (86)
226 2lvu_A Zinc finger and BTB dom 32.7 14 0.00047 12.5 0.0 10 45-54 4-13 (26)
227 1ard_A Yeast transcription fac 26.6 26 0.00088 11.8 0.9 11 44-54 3-13 (29)
228 2csz_A Synaptotagmin-like prot 26.6 30 0.001 16.9 1.3 29 4-32 25-56 (76)
229 1y02_A CARP2, FYVE-ring finger 26.4 17 0.00057 19.2 0.3 43 5-50 20-64 (120)
230 1e8j_A Rubredoxin; iron-sulfur 26.4 23 0.00079 15.8 0.8 8 45-52 38-45 (52)
231 2v3b_B Rubredoxin 2, rubredoxi 25.6 24 0.00081 16.0 0.7 8 45-52 38-45 (55)
232 1yk4_A Rubredoxin, RD; electro 25.1 24 0.00081 15.8 0.7 8 45-52 37-44 (52)
233 2e72_A POGO transposable eleme 24.9 40 0.0014 15.1 1.4 14 43-56 12-25 (49)
234 1wfk_A Zinc finger, FYVE domai 24.5 15 0.0005 18.1 -0.1 31 5-35 10-42 (88)
235 1klr_A Zinc finger Y-chromosom 24.2 32 0.0011 11.5 1.1 11 44-54 3-13 (30)
236 2jne_A Hypothetical protein YF 23.9 27 0.00094 18.0 0.8 13 44-56 33-45 (101)
237 2fiy_A Protein FDHE homolog; F 23.8 1.5 5.2E-05 26.7 -4.6 24 26-52 208-231 (309)
238 1p7a_A BF3, BKLF, kruppel-like 23.2 33 0.0011 12.5 0.9 12 44-55 12-23 (37)
239 3bbo_3 Ribosomal protein L33; 23.2 55 0.0019 15.4 1.8 15 44-58 50-64 (66)
240 1rik_A E6APC1 peptide; E6-bind 22.7 31 0.0011 11.6 0.7 10 45-54 4-13 (29)
241 2k5c_A Uncharacterized protein 22.1 27 0.00091 17.5 0.6 11 44-54 9-19 (95)
242 1paa_A Yeast transcription fac 21.9 38 0.0013 11.4 1.0 11 44-54 3-13 (30)
243 2lvt_A Zinc finger and BTB dom 27.3 19 0.00066 12.3 0.0 10 45-54 4-13 (29)
244 2kvf_A Zinc finger and BTB dom 21.6 30 0.001 11.6 0.6 11 44-54 4-14 (28)
245 2kvh_A Zinc finger and BTB dom 21.4 31 0.001 11.5 0.6 11 44-54 4-14 (27)
246 2elr_A Zinc finger protein 406 20.6 35 0.0012 12.3 0.7 12 44-55 10-21 (36)
No 1
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=92.44 Aligned_cols=51 Identities=35% Similarity=1.090 Sum_probs=40.9
Q ss_pred CCcccccCcCCC-------------CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGD-------------DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~-------------~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
++.|+||++.+. +.++++++|+|.||.+||.+|++.+ .+||+||+++.+++
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---NRCPLCQQDWVVQR 78 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---CBCTTTCCBCCEEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---CCCCCcCCCcchhh
Confidence 567888876443 2255666799999999999999987 79999999988764
No 2
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.76 E-value=5.9e-19 Score=93.85 Aligned_cols=52 Identities=40% Similarity=1.084 Sum_probs=42.6
Q ss_pred CCcccccCcCCC----------------CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccCC
Q 035392 4 DGCCPDCKLPGD----------------DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKGS 58 (59)
Q Consensus 4 ~~~C~IC~~~~~----------------~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~~ 58 (59)
+++|+||++.+. +.+++.++|+|.||..||.+|++.+ .+||+||++|.+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~Cr~~~~~~~~ 104 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWEFQKY 104 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC---SBCSSSCSBCCEEEC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC---CcCcCCCCcceeecC
Confidence 578999986433 2256778999999999999999986 799999999887653
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.72 E-value=8.4e-18 Score=79.31 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=40.8
Q ss_pred CCCcccccCcCCC--CCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGD--DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
.+..|+||++... +..++.++|+|.||..||.+|++.. ..||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---CcCCCCCCcCC
Confidence 3578999987543 3456778999999999999999987 78999999864
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.72 E-value=6.8e-18 Score=89.65 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=41.0
Q ss_pred CCcccccCcCCCC----------------CCeEecCCCCcccHHHHHHHHHhCC--CCCCCccccccccccCC
Q 035392 4 DGCCPDCKLPGDD----------------CPLIWGACNHAFHLHCILKWVNSQT--PQAHCPMCRREWQFKGS 58 (59)
Q Consensus 4 ~~~C~IC~~~~~~----------------~~~~~~~C~H~fh~~Ci~~w~~~~~--~~~~CP~Cr~~~~~~~~ 58 (59)
+..|+||++.+.. ..+.+++|+|.||..||.+|+.... ...+||+||+.+..+.+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 5789999865432 2334689999999999999996421 13689999998876543
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=80.73 Aligned_cols=50 Identities=24% Similarity=0.593 Sum_probs=41.4
Q ss_pred CCcccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++.+. ...++.++|+|.||..||.+|++.+ .+||+||+++...
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---KKCPICRVDIEAQ 64 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---SBCTTTCSBSCSC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---CCCcCcCccccCc
Confidence 567999987543 3456668999999999999999986 6899999988764
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.71 E-value=7.5e-18 Score=79.56 Aligned_cols=50 Identities=28% Similarity=0.621 Sum_probs=38.7
Q ss_pred CCCCcccccCcCCCC-CCeEecC-CCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 2 AFDGCCPDCKLPGDD-CPLIWGA-CNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 2 ~~~~~C~IC~~~~~~-~~~~~~~-C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
..+..|+||++.... ..+..++ |+|.||..||.+|++.+ .+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH---STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC---CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC---CcCcCCCCEeE
Confidence 345789999865432 2333455 99999999999999875 78999999875
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=82.51 Aligned_cols=50 Identities=28% Similarity=0.629 Sum_probs=40.9
Q ss_pred CCCcccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 3 FDGCCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 3 ~~~~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
.+..|+||++.+. ...+..++|+|.||..||.+|++.+ ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---KVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---SBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---CcCCCcCccccc
Confidence 4678999997543 3445567999999999999999987 689999998764
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-18 Score=84.24 Aligned_cols=51 Identities=29% Similarity=0.640 Sum_probs=41.3
Q ss_pred CCcccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++.+. ...+..++|+|.||..||.+|++.+ ..||+||+++....
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---RTCPICRADSGPSS 74 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---SSCTTTCCCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---CcCcCcCCcCCCCC
Confidence 467999996543 3345567999999999999999986 78999999887654
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=81.23 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=41.5
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++...+ ++.+++|||.||..||.+|++.. ..||+||+++...+
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 15 YILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYS---NRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHC---SSCTTTCCCCCSSC
T ss_pred CCCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcC---CcCCCcCcccCccc
Confidence 4689999876554 56656999999999999999885 78999999887654
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=2.1e-17 Score=82.78 Aligned_cols=51 Identities=31% Similarity=0.687 Sum_probs=41.8
Q ss_pred CCcccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++.+. ...+..++|+|.||..||.+|++.+ ..||+||+++..++
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH---DSCPVCRKSLTGQN 66 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT---CSCTTTCCCCCCSC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC---CcCcCcCCccCCcc
Confidence 568999987544 3455667999999999999999876 78999999887654
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.68 E-value=2e-17 Score=81.33 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=41.4
Q ss_pred CCcccccCcCCC-----CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGD-----DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~-----~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++... +..++.++|||.||..||.+|++.+ ..||+||+++...+
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHKR 65 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---SBCTTTCCBCCCCS
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---CCCCCCCCccChhh
Confidence 567999986432 2344668999999999999999987 79999999987654
No 12
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=84.98 Aligned_cols=49 Identities=29% Similarity=0.655 Sum_probs=39.3
Q ss_pred CCcccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++.+. +..+..++|+|.||..||.+|++.+ .+||+||+++..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~---~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS---GTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT---CBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC---CcCcCcCccCCC
Confidence 457999986443 3345557899999999999999876 799999998754
No 13
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.68 E-value=2.5e-18 Score=92.83 Aligned_cols=51 Identities=41% Similarity=1.118 Sum_probs=0.5
Q ss_pred CCcccccCcCCC----------------CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGD----------------DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~----------------~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
++.|+||++.+. +.+++.++|+|.||..||.+|++.+ .+||+||++|.+++
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWEFQK 114 (117)
T ss_dssp C---------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---CcCCCCCCeeeeec
Confidence 578999986433 2245557999999999999999986 79999999998765
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2e-17 Score=80.84 Aligned_cols=49 Identities=22% Similarity=0.561 Sum_probs=39.5
Q ss_pred CCcccccCcCCC-----CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGD-----DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~-----~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++... ...++.++|||.||..||.+|++.+ ..||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC---SSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC---CCCCCCCCccCc
Confidence 568999986432 2334668999999999999999986 799999998764
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=80.31 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=41.8
Q ss_pred CCcccccCcCCCC--CCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDD--CPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~--~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++.+.+ ...+.++|||.||..||.+|++.......||+||+++...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4689999865443 22455799999999999999998533468999999887643
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.67 E-value=3.3e-17 Score=79.02 Aligned_cols=51 Identities=24% Similarity=0.534 Sum_probs=40.9
Q ss_pred CCcccccCcCCC-----CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGD-----DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~-----~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++... ...++.++|||.||..||.+|++.+ ..||+||+++..++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC---SBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC---CCCCCCCccCCccc
Confidence 568999986432 2344567999999999999999986 79999999887653
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.66 E-value=9.8e-17 Score=78.46 Aligned_cols=49 Identities=27% Similarity=0.644 Sum_probs=40.7
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
.+..|+||++...+ +.+.++|||.||..|+.+|++.+ ..||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN-YSMALPCLHAFCYVCITRWIRQN---PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS-CEEETTTTEEESTTHHHHHHHHS---CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC-CcEecCCCCeeHHHHHHHHHhCc---CcCcCCChhhHh
Confidence 45789999876554 44568999999999999999886 799999998753
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.3e-17 Score=79.87 Aligned_cols=48 Identities=29% Similarity=0.654 Sum_probs=39.8
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++...+ +.++|+|.||..||.+|+... ..||+||+++...+
T Consensus 15 ~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMDGRAD---LILPCAHSFCQKCIDKWSDRH---RNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCCSCCS---EEETTTEEECHHHHHHSSCCC---SSCHHHHHCTTCCC
T ss_pred CCCCeeCCcCccC---cccCCCCcccHHHHHHHHHCc---CcCCCcCCcccCCC
Confidence 4689999876655 457999999999999999864 79999999887543
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=78.03 Aligned_cols=53 Identities=25% Similarity=0.525 Sum_probs=41.4
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccCC
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKGS 58 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~~ 58 (59)
+..|+||++...+ ++. ++|||.||..||.+|++.......||+||+++..++.
T Consensus 20 ~~~C~IC~~~~~~-~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 20 EVICPICLDILQK-PVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCBCTTTCSBCSS-EEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CCEeccCCcccCC-eEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 5689999876554 343 5999999999999999743334689999999887653
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=79.55 Aligned_cols=52 Identities=29% Similarity=0.807 Sum_probs=40.8
Q ss_pred CCcccccCcCCC-CCCeEecCCC-----CcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGD-DCPLIWGACN-----HAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~-~~~~~~~~C~-----H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|.||++.++ +.++ +++|+ |.||.+||.+|+..+. ..+||+||.++.++.
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSD-TRCCELCKYEFIMET 72 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHC-CSBCSSSCCBCCCCC
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCC-CCCCCCCCCeeecCc
Confidence 568999996544 3344 57996 9999999999999852 258999999987654
No 21
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.62 E-value=2.9e-16 Score=76.38 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=39.8
Q ss_pred CCcccccCc-CCCCC--CeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKL-PGDDC--PLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~-~~~~~--~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++ ...+. ..+.++|||+||..||.+|+... ...||+||+++...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--AGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--SSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC--CCcCCCCCCcccccc
Confidence 568999987 33322 23457999999999999998764 268999999887654
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.62 E-value=3.8e-16 Score=81.70 Aligned_cols=51 Identities=27% Similarity=0.568 Sum_probs=41.2
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++.+.+ ++..++|||.||..||.+|+.... ..||+||.++...+
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 22 VFRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQR--AQCPHCRAPLQLRE 72 (100)
T ss_dssp HTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGG
T ss_pred CCCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCc--CCCCCCCCcCCHHH
Confidence 4689999876554 554479999999999999999863 58999999886543
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.1e-16 Score=75.17 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=39.3
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++...+ ++. ++|||.||..||.+|++.. ...||+||+++..++
T Consensus 15 ~~~C~IC~~~~~~-p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 15 KYKCEKCHLVLCS-PKQ-TECGHRFCESCMAALLSSS--SPKCTACQESIVKDK 64 (66)
T ss_dssp CEECTTTCCEESS-CCC-CSSSCCCCHHHHHHHHTTS--SCCCTTTCCCCCTTT
T ss_pred CCCCCCCChHhcC-eeE-CCCCCHHHHHHHHHHHHhC--cCCCCCCCcCCChhh
Confidence 4679999865544 333 5999999999999999643 268999999987654
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.59 E-value=4.2e-16 Score=85.38 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=38.7
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++...+ ++ .++|||.||..||.+|+..+ ..||+||+++..
T Consensus 53 ~~~C~iC~~~~~~-~~-~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE-AV-TLNCAHSFCSYCINEWMKRK---IECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS-EE-EETTSCEEEHHHHHHHTTTC---SBCTTTCCBCCC
T ss_pred cCCCcccCcccCC-ce-ECCCCCCccHHHHHHHHHcC---CcCCCCCCcCCC
Confidence 3579999876654 33 46999999999999999876 789999998764
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=75.56 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=38.3
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+..|+||++...+ ++ +++|||.||..||.+|++.. ..||+||+++.
T Consensus 15 ~~~C~IC~~~~~~-p~-~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-PV-VTKCRHYFCESCALEHFRAT---PRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-EE-ECTTSCEEEHHHHHHHHHHC---SBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-ee-EccCCCHhHHHHHHHHHHCC---CcCCCcCcccc
Confidence 4579999876554 44 47999999999999999875 78999999875
No 26
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-16 Score=77.19 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=39.0
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++...+ ++ .++|||.||..||.+|+... ..||+||+.+...
T Consensus 15 ~~~C~IC~~~~~~-~~-~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 15 VPECAICLQTCVH-PV-SLPCKHVFCYLCVKGASWLG---KRCALCRQEIPED 62 (71)
T ss_dssp CCBCSSSSSBCSS-EE-EETTTEEEEHHHHHHCTTCS---SBCSSSCCBCCHH
T ss_pred CCCCccCCcccCC-CE-EccCCCHHHHHHHHHHHHCC---CcCcCcCchhCHh
Confidence 4679999876554 33 35899999999999999876 7899999987643
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.58 E-value=1.5e-15 Score=75.92 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=40.7
Q ss_pred CCCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 2 AFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 2 ~~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+.+..|+||++...+ ++. ++|||+||+.||.+|+..+ ...||+||+++...
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~-~~CgH~fc~~Ci~~~~~~~--~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVI-VSTGQTYERSSIQKWLDAG--HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEE-ETTTEEEEHHHHHHHHTTT--CCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccC-CEE-cCCCCeecHHHHHHHHHHC--cCCCCCCcCCCChh
Confidence 446789999876554 444 5999999999999999863 27899999988654
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=79.56 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=40.0
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++...+ ++.+++|||.||..||.+|+..+ ..||+||.++...
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYK---TQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTC---CBCTTTCCBCCGG
T ss_pred CCCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCC---CCCCCCCCcCChh
Confidence 3679999876554 55545999999999999999875 7999999987753
No 29
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=75.78 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=39.3
Q ss_pred CCcccccCcCCCCCCeEecC-CCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGA-CNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~-C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++.+.+ ++. ++ |||.||..||.+|++... ...||+||+++...
T Consensus 15 ~~~C~IC~~~~~~-p~~-~~~CgH~fC~~Ci~~~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 15 ELLCLICKDIMTD-AVV-IPCCGNSYCDECIRTALLESD-EHTCPTCHQNDVSP 65 (74)
T ss_dssp GGSCSSSCCCCTT-CEE-CSSSCCEECTTHHHHHHHHSS-SSCCSSSCCSSCCT
T ss_pred CCCCcCCChHHhC-CeE-cCCCCCHHHHHHHHHHHHhcC-CCcCCCCCCcCCCc
Confidence 5689999876554 555 57 999999999999998752 25899999976543
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.56 E-value=2.5e-15 Score=79.21 Aligned_cols=49 Identities=22% Similarity=0.438 Sum_probs=40.5
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++...+ ++.+++|||+||..||.+|+..+ ..||+||..+...
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETS---KYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSC---SBCTTTCCBSCSS
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhC---CcCcCCCcccccc
Confidence 5689999876554 55556999999999999999876 7899999987653
No 31
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.56 E-value=4e-15 Score=75.26 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=38.7
Q ss_pred CCcccccCcCCCCC--CeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDDC--PLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~~--~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+.+||||+++.... .+..++|||+||..|+.+++... ...||+||+++....
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~--~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE--NGLCPACRKPYPEDP 64 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS--CSBCTTTCCBCSSCS
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC--CCCCCCCCCccCCCc
Confidence 46899999876432 22222499999999999998653 368999999887543
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-15 Score=71.44 Aligned_cols=44 Identities=30% Similarity=0.648 Sum_probs=35.0
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMC 49 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~C 49 (59)
+..|+||++...+ ++. ++|||.||..||.+|++.......||+|
T Consensus 20 ~~~C~IC~~~~~~-p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQK-PVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSS-CEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCC-eEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 5689999876554 444 5999999999999999864334689998
No 33
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=5.8e-15 Score=74.25 Aligned_cols=51 Identities=31% Similarity=0.690 Sum_probs=40.2
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCC---CCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQT---PQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~---~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++...+ ++ .++|||.||..||.+|+.... ....||+||.++...
T Consensus 19 ~~~C~IC~~~~~~-p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKE-PV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSS-CE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCCcCCChhhCc-ce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 5689999876554 44 369999999999999999831 136899999988754
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.55 E-value=1.5e-15 Score=81.49 Aligned_cols=50 Identities=24% Similarity=0.588 Sum_probs=40.3
Q ss_pred CCcccccCcCCCC-----CCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDD-----CPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~-----~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++...+ ..++.++|||+||..||.+|++.+ ..||+||+.+...
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHK 61 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC---SBCTTTCCBCTTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC---CCCCCCCCcCccc
Confidence 5689999865332 234567999999999999999886 6999999988754
No 35
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4e-15 Score=74.79 Aligned_cols=52 Identities=23% Similarity=0.537 Sum_probs=40.8
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccCC
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKGS 58 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~~ 58 (59)
..|+||.+.+.. ......|+|.||..||.+|+++.. ..+||+||++|..+..
T Consensus 16 ~~C~IC~~~i~~-g~~C~~C~h~fH~~Ci~kWl~~~~-~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 16 KICNICHSLLIQ-GQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWPHEIP 67 (74)
T ss_dssp CBCSSSCCBCSS-SEECSSSCCEECHHHHHHHSTTCS-SCCCTTTCSCCCSCCC
T ss_pred CcCcchhhHccc-CCccCCCCchhhHHHHHHHHHhcC-CCCCCCCcCcCCCCCC
Confidence 679999865443 233349999999999999998753 3689999999987654
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=73.33 Aligned_cols=52 Identities=27% Similarity=0.583 Sum_probs=40.2
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC---CCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ---TPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~---~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++...+ ++. ++|||.||..||.+|+... .....||+||..+...+
T Consensus 19 ~~~C~IC~~~~~~-p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCTTTCSCCSS-CBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCcccCC-cee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 5689999876554 333 5999999999999999871 12378999999887543
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.52 E-value=7.7e-15 Score=77.32 Aligned_cols=51 Identities=27% Similarity=0.658 Sum_probs=40.2
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++...+ ++. ++|||.||..||.+|+..+.+...||+||.++...
T Consensus 21 ~~~C~IC~~~~~~-p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE-PVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS-CCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC-eEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 3579999876554 333 59999999999999999764345899999987754
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=68.44 Aligned_cols=44 Identities=27% Similarity=0.684 Sum_probs=34.1
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMC 49 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~C 49 (59)
+..|+||++...+. +. ++|||.||..||.+|+........||+|
T Consensus 15 ~~~C~IC~~~~~~p-~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-VI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSC-CC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCcc-Ee-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 56899998765553 33 6999999999999997652234789998
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=74.46 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=38.5
Q ss_pred CCCcccccCcCCCCCCeEecC-CCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGA-CNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~-C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
.+..|+||++.+.+ ++. ++ |||+||..||.+|+.... ...||+||.++.
T Consensus 12 ~~~~C~IC~~~~~~-p~~-~~~CgH~fC~~Ci~~~~~~~~-~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTD-AVV-IPCCGNSYCDECIRTALLESD-EHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSS-CEE-CTTTCCEECHHHHHHHHHHCT-TCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcC-ceE-CCCCCCHHHHHHHHHHHHhcC-CCcCcCCCCcCC
Confidence 35689999865554 554 57 999999999999998642 258999999873
No 40
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-15 Score=75.72 Aligned_cols=52 Identities=25% Similarity=0.537 Sum_probs=39.9
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC----CCCCCCcccccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ----TPQAHCPMCRREWQFK 56 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~----~~~~~CP~Cr~~~~~~ 56 (59)
.+..|+||++...+ ++. ++|||.||..||.+|+... .....||+||.++...
T Consensus 11 ~~~~C~IC~~~~~~-p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTE-PLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSS-CCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCC-eeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 35689999876554 333 5999999999999999863 1136899999988654
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.51 E-value=1.5e-14 Score=80.88 Aligned_cols=48 Identities=27% Similarity=0.558 Sum_probs=39.2
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
..|+||++...+ ++.+++|||.||..||.+|+... ...||+||.++..
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRFCADCIITALRSG--NKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTT--CCBCTTTCCBCCS
T ss_pred CCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhC--cCCCCCCCCcCCC
Confidence 379999876554 55556999999999999999973 2789999998753
No 42
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=78.32 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=38.6
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++...+ ++. ++|||.||..||.+|+..+ ...||+||+++..
T Consensus 52 ~~~C~IC~~~~~~-p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR-PIT-TVCQHNVCKDCLDRSFRAQ--VFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS-EEE-CTTSCEEEHHHHHHHHHTT--CCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC-cEE-eeCCCcccHHHHHHHHhHC--cCCCCCCCccCCC
Confidence 3579999876554 443 5999999999999999854 2589999998865
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.49 E-value=2.5e-14 Score=76.50 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=39.5
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++...+ ++. ++|||.||..||.+|+.... ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~-p~~-~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 18 KYECPICLMALRE-AVQ-TPCGHRFCKACIIKSIRDAG--HKCPVDNEILLEN 66 (118)
T ss_dssp GGBCTTTCSBCSS-EEE-CTTSCEEEHHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCcCChhhcC-eEE-CCcCChhhHHHHHHHHhhCC--CCCCCCCCCcCHH
Confidence 4689999876554 343 69999999999999998862 4899999988754
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.48 E-value=1.4e-14 Score=77.71 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=40.1
Q ss_pred CCcccccCcCCC-----CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGD-----DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~-----~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++... ....+.++|||.||..||.+|++.. .+||+||+++..++
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHKR 127 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC---SBCTTTCCBCCGGG
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC---CCCCCCCCcCChhc
Confidence 457999975432 2234567999999999999999987 79999999887653
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.46 E-value=2.9e-14 Score=75.88 Aligned_cols=50 Identities=28% Similarity=0.540 Sum_probs=39.9
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++...+ ++. ++|||.||..||.+|+.... ..||+||.++...+
T Consensus 23 ~~~C~IC~~~~~~-p~~-~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD-PVE-TSCKHLFCRICILRCLKVMG--SYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS-EEE-CTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC-cEE-cCCCCcccHHHHHHHHhHCc--CcCCCCCCCCCHhh
Confidence 3579999876554 444 69999999999999999842 68999999887543
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.44 E-value=5.8e-14 Score=68.43 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=37.8
Q ss_pred CCcccccCcCCCCCCeEecCCCCc-ccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHA-FHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+..|+||++...+..+..++|||. |+.+|+.+|++.+ ..||+||+++.
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN---KPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT---CCCTTTCCCCC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC---CcCCCcCcchh
Confidence 568999987555432223499999 8999999999875 68999999875
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.43 E-value=6.9e-14 Score=77.74 Aligned_cols=49 Identities=22% Similarity=0.475 Sum_probs=39.4
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++...+ ++. ++|||.||..||.+|+... ...||+||.++...
T Consensus 78 ~~~C~IC~~~~~~-pv~-~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-PVT-TECFHNVCKDCLQRSFKAQ--VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS-EEE-CTTSCEEEHHHHHHHHHTT--CCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC-CEE-cCCCCchhHHHHHHHHHhC--CCcCCCCCccCCCC
Confidence 3579999876554 444 6999999999999999875 25899999988754
No 48
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.42 E-value=7.3e-14 Score=67.89 Aligned_cols=49 Identities=29% Similarity=0.595 Sum_probs=38.8
Q ss_pred CCCcccccCcCCCCCCeEecCCCCc-ccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHA-FHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
.+..|+||++...+..++.++|||. |+.+|+.+|++.+ ..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG---ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT---CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC---CcCCCcCchhh
Confidence 3568999987544433444599998 9999999999775 68999999875
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.42 E-value=1.9e-13 Score=69.77 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=40.8
Q ss_pred CCCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 2 AFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 2 ~~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+.+..||||++...+ |+. ++|||+|++.||.+|+... .+||+|+.++...
T Consensus 12 p~~~~CpI~~~~m~d-PV~-~~cGhtf~r~~I~~~l~~~---~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVR-LPSGTVMDRSIILRHLLNS---PTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEE-CTTSCEEEHHHHHHHHHHC---SBCTTTCCBCCGG
T ss_pred chheECcccCchhcC-CeE-CCCCCEECHHHHHHHHhcC---CCCCCCcCCCChH
Confidence 446789999876555 444 5899999999999999975 7999999988654
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.40 E-value=7.7e-14 Score=76.94 Aligned_cols=48 Identities=21% Similarity=0.544 Sum_probs=38.0
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++...+ ++. ++|||.||..||.+|+.... ..||+||.++.+
T Consensus 31 ~~~C~IC~~~~~~-pv~-~~CgH~FC~~Ci~~~~~~~~--~~CP~Cr~~~~~ 78 (141)
T 3knv_A 31 KYLCSACRNVLRR-PFQ-AQCGHRYCSFCLASILSSGP--QNCAACVHEGIY 78 (141)
T ss_dssp GGBCTTTCSBCSS-EEE-CTTSCEEEHHHHHHHGGGSC--EECHHHHHTTCC
T ss_pred CcCCCCCChhhcC-cEE-CCCCCccCHHHHHHHHhcCC--CCCCCCCCcccc
Confidence 4689999876554 344 69999999999999998652 489999997643
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.38 E-value=8.7e-14 Score=74.26 Aligned_cols=47 Identities=23% Similarity=0.587 Sum_probs=37.6
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++.+.+ ++.+.+|||+||..||.+|+. ..||+||.++...
T Consensus 22 ~~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSCS
T ss_pred CCCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCccc
Confidence 4689999866544 555349999999999999987 4699999988654
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.38 E-value=2.7e-14 Score=75.89 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=38.1
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++...+ ++. ++|||.||..||.+|+... ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~-p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE-PVT-LPCNHTLCKPCFQSTVEKA--SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS-CEE-CTTSCEECHHHHCCCCCTT--TSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc-eeE-cCCCCHHhHHHHHHHHhHC--cCCCCCCCcccCc
Confidence 3579999866554 444 5999999999999999764 2689999998753
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.37 E-value=3.3e-13 Score=70.81 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=40.4
Q ss_pred CCCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 2 AFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 2 ~~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+.+..||||++...+ |+. ++|||+|++.||.+|+... .+||+||.++...
T Consensus 27 p~~~~CpI~~~~m~d-PV~-~~cGhtf~r~~I~~~l~~~---~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVR-LPSGTIMDRSIILRHLLNS---PTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSS-EEE-ETTTEEEEHHHHHHHTTSC---SBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccC-CeE-CCCCCEEchHHHHHHHHcC---CCCCCCCCCCChh
Confidence 346789999876555 444 4799999999999999864 7999999988754
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.36 E-value=4.8e-13 Score=69.99 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=40.8
Q ss_pred CCCCcccccCcCCCCCCeEecCCC-CcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 2 AFDGCCPDCKLPGDDCPLIWGACN-HAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 2 ~~~~~C~IC~~~~~~~~~~~~~C~-H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+.+..||||++...+ |++ ++|| |+|++.||.+|+... .+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~d-PV~-~~cG~htf~r~cI~~~l~~~---~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVV-LPSSRVTVDRSTIARHLLSD---QTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEE-CTTTCCEEEHHHHHHHTTTS---CBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccC-CeE-CCCCCeEECHHHHHHHHHhC---CCCCCCCCCCChh
Confidence 446789999876555 444 5899 999999999999875 7899999988754
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.34 E-value=9.4e-13 Score=73.80 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=39.7
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|+||++...+ ++. ++|||+||..||.+|+..+. ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~-pv~-~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 18 KYECPICLMALRE-AVQ-TPCGHRFCKACIIKSIRDAG--HKCPVDNEILLEN 66 (170)
T ss_dssp GGBCTTTCSBCSS-EEE-CTTSCEEEHHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCChhhcC-cEE-CCCCCHHHHHHHHHHHHhCC--CCCCCCccCcchh
Confidence 4689999876554 444 69999999999999998752 4899999988754
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.6e-12 Score=65.96 Aligned_cols=51 Identities=24% Similarity=0.488 Sum_probs=38.3
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC---CCCCCCcc--cccc-cc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ---TPQAHCPM--CRRE-WQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~---~~~~~CP~--Cr~~-~~ 54 (59)
.+..||||++.+.+ |+.+..|||+|++.||.+|+..+ ....+||+ |+.. +.
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 45789999876655 55543599999999999999874 12358999 9865 44
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=2.1e-12 Score=76.01 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=40.5
Q ss_pred CCCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 2 AFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 2 ~~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+.+..||||++...+ |++ ++|||+|++.||.+|+..+. .+||+||.++...
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~-~~~gh~f~~~~i~~~~~~~~--~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCI-TPSGITYDRKDIEEHLQRVG--HFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEE-CSSCCEEETTHHHHHHHHTC--SSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcC-CeE-CCCCCEECHHHHHHHHHHCC--CCCcCCCCCCchh
Confidence 446789999876555 444 58999999999999998752 4599999988654
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.28 E-value=2.6e-12 Score=80.37 Aligned_cols=48 Identities=27% Similarity=0.633 Sum_probs=38.3
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
..|+||++...+ .+.++|||.||..|+.+|+... ...||+||+++...
T Consensus 333 ~~C~ICle~~~~--pv~lpCGH~FC~~Ci~~wl~~~--~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKD--VKIEPCGHLMCTSCLTSWQESE--GQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCC--EEEETTCCEECHHHHHHHHHHT--CSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCC--eEEeCCCChhhHHHHHHHHhcC--CCCCCCCCCccCCc
Confidence 589999876544 3446999999999999999843 26899999987653
No 59
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=6.4e-13 Score=63.07 Aligned_cols=46 Identities=22% Similarity=0.576 Sum_probs=36.0
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
+..|+||++.+.+ ++ .++|||+||..||.+| . ..||+||+++....
T Consensus 6 ~~~C~IC~~~~~~-p~-~l~CgH~fC~~Ci~~~---~---~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 6 FLRCQQCQAEAKC-PK-LLPCLHTLCSGCLEAS---G---MQCPICQAPWPLGA 51 (56)
T ss_dssp CSSCSSSCSSCBC-CS-CSTTSCCSBTTTCSSS---S---SSCSSCCSSSSCCS
T ss_pred CCCceEeCCccCC-eE-EcCCCCcccHHHHccC---C---CCCCcCCcEeecCC
Confidence 4679999876554 33 3699999999999873 2 68999999987654
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.23 E-value=2.1e-12 Score=64.27 Aligned_cols=43 Identities=23% Similarity=0.493 Sum_probs=34.1
Q ss_pred CCcccccCcCCCCCCeEecCCCCc-ccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHA-FHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++...+ + +.++|||. ||..|+.+| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~-~-~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA-I-VFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC-E-EEETTCCBCCCHHHHTTC-------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC-E-EEcCCCChhHHHHhhhcC-------ccCCCcCcCccC
Confidence 4679999865444 3 34699999 999999988 479999998764
No 61
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.1e-11 Score=74.36 Aligned_cols=52 Identities=27% Similarity=0.577 Sum_probs=41.1
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcc--cccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPM--CRREWQFK 56 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~--Cr~~~~~~ 56 (59)
.+..||||++.+.+ |+....|||+|++.||.+|++.+ +...||+ |++.+...
T Consensus 180 ~el~CPIcl~~f~D-PVts~~CGHsFcR~cI~~~~~~~-~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEA-PLISRKCNHVFDRDGIQNYLQGY-TTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSS-EEEESSSCCEEEHHHHHHHSTTC-SCEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccC-CeeeCCCCCcccHHHHHHHHHhC-CCCCCCcccccCcCchh
Confidence 45789999876655 56556999999999999999864 2357999 99987654
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.18 E-value=1.9e-11 Score=59.02 Aligned_cols=50 Identities=18% Similarity=0.497 Sum_probs=37.1
Q ss_pred CCcccccCcCCCCCCeEecCCC--C---cccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACN--H---AFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~--H---~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|.||++..++ +. .++|. + .||.+||.+|+..+. +.+||+|+.++.++
T Consensus 6 ~~~CrIC~~~~~~-~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~-~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 6 VPVCWICNEELGN-ER-FRACGCTGELENVHRSCLSTWLTISR-NTACQICGVVYNTR 60 (60)
T ss_dssp CCEETTTTEECSC-CC-CCSCCCSSGGGSCCHHHHHHHHHHHT-CSBCTTTCCBCCCC
T ss_pred CCEeEEeecCCCC-ce-ecCcCCCCchhhhHHHHHHHHHHhCC-CCccCCCCCeeecC
Confidence 4579999865333 33 35765 4 999999999998642 36899999988753
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.13 E-value=3.8e-11 Score=68.63 Aligned_cols=51 Identities=12% Similarity=0.004 Sum_probs=40.6
Q ss_pred CCCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 2 AFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 2 ~~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
|.+..||||++...+ |++ ++|||+|++.||..|+..+. .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~D-PV~-~~~Ghtfer~~I~~~l~~~~--~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCI-TPSGITYDRKDIEEHLQRVG--HFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEE-CTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC-CeE-CCCCCEECHHHHHHHHHhCC--CCCCCCcCCCChh
Confidence 445789999876665 554 59999999999999998752 3799999988654
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=5.6e-11 Score=61.19 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=36.4
Q ss_pred CCcccccCcCCCCCCe-EecCCCCcccHHHHHHHHHhC----C-CCCCCcc--cccc
Q 035392 4 DGCCPDCKLPGDDCPL-IWGACNHAFHLHCILKWVNSQ----T-PQAHCPM--CRRE 52 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~-~~~~C~H~fh~~Ci~~w~~~~----~-~~~~CP~--Cr~~ 52 (59)
+.+|+||++....... .+.+|||.||.+|+.++++.+ . ....||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4689999876554333 334799999999999999752 1 1247999 9987
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=57.31 Aligned_cols=42 Identities=24% Similarity=0.504 Sum_probs=32.5
Q ss_pred CcccccCcCCCCCCeEecCCCCc-ccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHA-FHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
..|+||++...+. +.++|||. ||..|+.+ . ..||+||+++..
T Consensus 26 ~~C~IC~~~~~~~--~~~pCgH~~~C~~C~~~----~---~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI--VFVPCGHLVTCKQCAEA----V---DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB--CCSSSCCCCBCHHHHHH----C---SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE--EEecCCCHHHHHHHhhC----C---CCCccCCceecC
Confidence 4799998765543 33699999 99999953 2 589999998764
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.05 E-value=4.1e-11 Score=74.40 Aligned_cols=51 Identities=24% Similarity=0.539 Sum_probs=36.4
Q ss_pred CcccccCcCCCC---CCeE---ecCCCCcccHHHHHHHHHhCCC--------CCCCccccccccc
Q 035392 5 GCCPDCKLPGDD---CPLI---WGACNHAFHLHCILKWVNSQTP--------QAHCPMCRREWQF 55 (59)
Q Consensus 5 ~~C~IC~~~~~~---~~~~---~~~C~H~fh~~Ci~~w~~~~~~--------~~~CP~Cr~~~~~ 55 (59)
..|+||+....+ .+.. .+.|+|.||..||.+|+++... ...||+||+++..
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 479999854332 2211 3489999999999999986321 1369999998764
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.99 E-value=9e-11 Score=59.12 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=33.3
Q ss_pred CCcccccCcCCCCCCeEecCCCCc-ccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHA-FHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++...+ .+.++|||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~--~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN--STFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC--EEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc--EEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC
Confidence 4579999865443 345699999 999999875 379999997653
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=4.3e-10 Score=55.22 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=33.4
Q ss_pred CCcccccCcCCCCCCeEecCCCCc-ccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHA-FHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++...+ +++++|||. ||..|+.. . ..||+||+++..
T Consensus 15 ~~~C~IC~~~~~~--~v~~pCgH~~~C~~C~~~----~---~~CP~CR~~i~~ 58 (68)
T 2ea5_A 15 SKDCVVCQNGTVN--WVLLPCRHTCLCDGCVKY----F---QQCPMCRQFVQE 58 (68)
T ss_dssp SSCCSSSSSSCCC--CEETTTTBCCSCTTHHHH----C---SSCTTTCCCCCC
T ss_pred CCCCCCcCcCCCC--EEEECCCChhhhHHHHhc----C---CCCCCCCcchhc
Confidence 4679999865443 455799999 99999983 2 589999998753
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.91 E-value=1.2e-09 Score=52.64 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=39.8
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
...|||+++...+ +++..++||+|.+++|.+|++.+ .+||+.+.++...+
T Consensus 3 ~~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~~~---~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDT---GNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHH---SBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHHhC---CCCcCCcCCCChhh
Confidence 3579999876554 55544899999999999999986 67999999887654
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.85 E-value=2.5e-09 Score=56.15 Aligned_cols=47 Identities=26% Similarity=0.480 Sum_probs=35.8
Q ss_pred cccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 6 CCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
-|++|..+.... ..+.+|+|+||.+|+..|.++.. .+||.|+.++..
T Consensus 3 fC~~C~~Pi~iy-gRmIPCkHvFCydCa~~~~~~~~--k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVY-GRMIPCKHVFCYDCAILHEKKGD--KMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEE-EEEETTCCEEEHHHHHHHHHTTC--CBCTTTCCBCSE
T ss_pred ecCccCCCeEEE-eeeccccccHHHHHHHHHHhccC--CCCcCcCCeeee
Confidence 478886554432 23469999999999999987653 789999998764
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.80 E-value=7e-10 Score=68.46 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=34.1
Q ss_pred CCcccccCcCCCCCCeEecCCCCc-ccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHA-FHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
+..|+||++...+ + +.++|||. ||..|+..| ..||+||.++..
T Consensus 295 ~~~C~IC~~~~~~-~-v~lpCgH~~fC~~C~~~~-------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS-V-VFIPCGHLVVCQECAPSL-------RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC-E-EEETTCCEEECTTTGGGC-------SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc-e-EEcCCCChhHhHHHHhcC-------CcCCCCCCCccC
Confidence 4689999875543 3 34699999 999999987 479999998763
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.68 E-value=2.5e-08 Score=58.90 Aligned_cols=52 Identities=23% Similarity=0.537 Sum_probs=39.4
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccccCC
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKGS 58 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~~ 58 (59)
..|.||.+.... ......|+|.||..|+.+|+++.. ...||.|+.+|..+..
T Consensus 181 ~~C~iC~~iv~~-g~~C~~C~~~~H~~C~~~~~~~~~-~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 181 KICNICHSLLIQ-GQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CBCTTTCSBCSS-CEECSSSCCEECHHHHHHHTTTCS-SCBCTTTCCBCCSCCC
T ss_pred CcCcchhhHHhC-CcccCccChHHHHHHHHHHHHhCC-CCCCCCCCCCCCCCCC
Confidence 469999754433 334446999999999999998742 3589999999987653
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.34 E-value=0.00025 Score=36.27 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=25.4
Q ss_pred CCCcccccCcC-CCCCCeEecCCCCcccHHHHHHH
Q 035392 3 FDGCCPDCKLP-GDDCPLIWGACNHAFHLHCILKW 36 (59)
Q Consensus 3 ~~~~C~IC~~~-~~~~~~~~~~C~H~fh~~Ci~~w 36 (59)
.+..|+||.+. ..+....-+.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46789999753 34433434799999999999983
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.50 E-value=0.00086 Score=34.80 Aligned_cols=43 Identities=26% Similarity=0.732 Sum_probs=32.5
Q ss_pred cccccCcCCCCCCeEecCC-CCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 6 CCPDCKLPGDDCPLIWGAC-NHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~C-~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
.|-.|+...+ ..+ .| .|.+|..|+...+... ..||+|.+++..
T Consensus 30 nCKsCWf~~k--~LV--~C~dHYLCl~CLtlmL~~S---drCpIC~~pLPt 73 (99)
T 2ko5_A 30 FCKSCWFENK--GLV--ECNNHYLCLNCLTLLLSVS---NRCPICKMPLPT 73 (99)
T ss_dssp CCCSSCSCCS--SEE--ECSSCEEEHHHHHHTCSSS---SEETTTTEECCC
T ss_pred cChhhccccC--Cee--eecchhhHHHHHHHHHhhc---cCCcccCCcCCc
Confidence 5777765433 222 56 5999999999998886 799999997754
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.49 E-value=0.003 Score=30.50 Aligned_cols=50 Identities=22% Similarity=0.348 Sum_probs=34.7
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCC-CCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQT-PQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~-~~~~CP~Cr~~~~~ 55 (59)
+..|.||.+. +..+.-..|...||..|+...+.... +.=.||.|+.....
T Consensus 12 ~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 12 GARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp TCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 3569999643 23555678999999999987765532 12479999875443
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.97 E-value=0.0082 Score=30.55 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=24.4
Q ss_pred CCCCcccccCcCCCCCCeEecCCCCcccHHHHHHH
Q 035392 2 AFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKW 36 (59)
Q Consensus 2 ~~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w 36 (59)
+-|+.|.||.....+...---.|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccccccceeccccccccccHhhcccc
Confidence 45788999963333322222478999999999995
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=95.21 E-value=0.0043 Score=30.28 Aligned_cols=51 Identities=24% Similarity=0.542 Sum_probs=33.9
Q ss_pred cccccCcCCCC-CCeEecCCCCcccHHHHHHHHHhCC-CCCCCcccccccccc
Q 035392 6 CCPDCKLPGDD-CPLIWGACNHAFHLHCILKWVNSQT-PQAHCPMCRREWQFK 56 (59)
Q Consensus 6 ~C~IC~~~~~~-~~~~~~~C~H~fh~~Ci~~w~~~~~-~~~~CP~Cr~~~~~~ 56 (59)
.|+||....++ ..+.-..|.-.||..|+.--..... +.-.||.|+..+...
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 59999754433 3455568889999999975433211 235799998776543
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=95.13 E-value=0.013 Score=26.41 Aligned_cols=46 Identities=33% Similarity=0.748 Sum_probs=30.3
Q ss_pred cccccCcCC-CCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCccccc
Q 035392 6 CCPDCKLPG-DDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRR 51 (59)
Q Consensus 6 ~C~IC~~~~-~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~ 51 (59)
.|.||.... .+..+.-..|...||..|+..-+... .+.-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588997543 23455566889999999997533321 12246999975
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.39 E-value=0.019 Score=27.07 Aligned_cols=47 Identities=21% Similarity=0.586 Sum_probs=31.8
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCcccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRRE 52 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~ 52 (59)
+..|.+|... ...+.-..|.-.||..|+..-+... .+.-.||.|+..
T Consensus 11 ~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4679999653 3345556888999999998754332 123479999763
No 80
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=94.16 E-value=0.087 Score=28.93 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=32.0
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHH--------hCCCCCCCccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVN--------SQTPQAHCPMCRR 51 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~--------~~~~~~~CP~Cr~ 51 (59)
.++.|.+|.+.. ..+.-..|.-+||..||..-+. ...+.=.||+|+.
T Consensus 62 ~~d~C~vC~~GG--~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGG--NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCS--SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCC--cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 467799995432 2344458889999999997553 1233457999974
No 81
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.91 E-value=0.015 Score=29.71 Aligned_cols=47 Identities=21% Similarity=0.467 Sum_probs=29.0
Q ss_pred cccccCcCCCCCCeEecC--CC-CcccHHHHHHHHHhC-CCCCCCccccccccc
Q 035392 6 CCPDCKLPGDDCPLIWGA--CN-HAFHLHCILKWVNSQ-TPQAHCPMCRREWQF 55 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~~~~ 55 (59)
.| ||........+.--. |. ..||..|+. +... .+.-.||.|+.....
T Consensus 38 yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 38 YC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred EE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 46 887644444444445 55 689999997 3221 123589999876443
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.81 E-value=0.014 Score=30.35 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=25.9
Q ss_pred CCCcccccCcCCC-CCCeEecCCCCcccHHHHHHHHH
Q 035392 3 FDGCCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVN 38 (59)
Q Consensus 3 ~~~~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~ 38 (59)
-++.|.||....+ +..+.-..|+..||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 3678999975543 22355578999999999987654
No 83
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=93.77 E-value=0.016 Score=28.29 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=29.1
Q ss_pred CcccccCcCCCCCCeEecC--CC-CcccHHHHHHHHHhC-CCCCCCccccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGA--CN-HAFHLHCILKWVNSQ-TPQAHCPMCRREWQF 55 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~~~~ 55 (59)
..| ||........+.--. |. ..||..|+. +... .+.-.||.|+..-..
T Consensus 17 ~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 17 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 68 (71)
T ss_dssp CCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSS
T ss_pred CEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccccc
Confidence 346 787543443333334 65 689999997 3322 124589999876443
No 84
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=93.46 E-value=0.28 Score=25.08 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=34.7
Q ss_pred CcccccCcCC-----CCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 5 GCCPDCKLPG-----DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 5 ~~C~IC~~~~-----~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
..|.||-+.. .+.-++...|+-..|+.|.+-=.+.. +..||.|+.++..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG--~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG--TQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS--CSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc--CccccccCCcccc
Confidence 4799996532 12334445778889999998755544 5789999998863
No 85
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=93.36 E-value=0.0056 Score=29.11 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=33.1
Q ss_pred CCcccccCcCC---CCCCeEecCCCCcccHHHHHHHHHh----CCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPG---DDCPLIWGACNHAFHLHCILKWVNS----QTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~---~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~~~~CP~Cr~~~~ 54 (59)
+..|.||.... ....+.-..|.-.||..|+..-+.. ..+.-.||.|.....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 56799997532 2334455688899999998754321 222357999976533
No 86
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.13 E-value=0.0057 Score=30.96 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=34.1
Q ss_pred CCcccccCcCCC---CCCeEecCCCCcccHHHHHHHHHh-----CCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGD---DCPLIWGACNHAFHLHCILKWVNS-----QTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~---~~~~~~~~C~H~fh~~Ci~~w~~~-----~~~~~~CP~Cr~~~~~ 55 (59)
+..|.||..... ...+.--.|...||..|+..-+.. ..+.=.|+.|+.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 457999975422 334455688999999999865432 2223579999765443
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=93.12 E-value=0.36 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCCcccccCcCC-------CCCCeEecCCCCcccHHHHH
Q 035392 3 FDGCCPDCKLPG-------DDCPLIWGACNHAFHLHCIL 34 (59)
Q Consensus 3 ~~~~C~IC~~~~-------~~~~~~~~~C~H~fh~~Ci~ 34 (59)
-...|.+|+... .+..+.-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 356799997431 23455567899999999995
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.78 E-value=0.0063 Score=28.55 Aligned_cols=50 Identities=20% Similarity=0.543 Sum_probs=33.5
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~~~ 54 (59)
-+..|.+|... +..+.-..|.-.||..|+..-+... .+.-.||.|+....
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 35789999653 3455566889999999998544321 12347999976543
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.56 E-value=0.035 Score=28.22 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=33.2
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~~~~ 55 (59)
+..|.+|.... ..+.-..|.-.||..|+..-+... .+.-.||.|+..-..
T Consensus 25 ~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 25 ATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred CCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCcc
Confidence 46799996432 345556888899999997655432 123479999865443
No 90
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=92.25 E-value=0.35 Score=26.11 Aligned_cols=47 Identities=26% Similarity=0.523 Sum_probs=30.3
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHH-----H-Hh--CCCCCCCccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKW-----V-NS--QTPQAHCPMCRR 51 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w-----~-~~--~~~~~~CP~Cr~ 51 (59)
.++.|.||.+. .+ .+.-..|-.+||..||..- + +. ..+.=.|++|+.
T Consensus 56 ~~~~C~vC~dG-G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG-GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC-SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC-Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45679999532 22 3334578899999999974 2 22 222357999965
No 91
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=92.15 E-value=0.023 Score=31.86 Aligned_cols=49 Identities=22% Similarity=0.450 Sum_probs=33.4
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRREW 53 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~~ 53 (59)
-++.|.+|... +..+.-..|.-.||..|+..-+... .+.-.||.|+..-
T Consensus 3 ~~~~C~~C~~~--g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG--GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC--SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC--CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35779999643 2355556899999999987655432 1234799998754
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=91.88 E-value=0.019 Score=29.01 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=33.0
Q ss_pred CCcccccCcCC---CCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 4 DGCCPDCKLPG---DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 4 ~~~C~IC~~~~---~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
+..|.||.... .+..+.-..|.-.||..|+..-+ ...+.-.||.|......+
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~-vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS-CCSSCCCCHHHHHHTTSC
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc-cCCCceECccccCccchh
Confidence 46799997532 12334445788899999997532 222234799998755444
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.64 E-value=0.025 Score=26.65 Aligned_cols=47 Identities=23% Similarity=0.476 Sum_probs=30.9
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCcccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRRE 52 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~ 52 (59)
+..|.||... ...+.-..|...||..|+..-+... .+.-.||.|+..
T Consensus 9 ~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4679999643 2344445788999999998544331 112479999764
No 94
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=90.53 E-value=0.015 Score=27.29 Aligned_cols=43 Identities=21% Similarity=0.522 Sum_probs=26.3
Q ss_pred cccccCcCCCCCCeEecC--CC-CcccHHHHHHHHHhC-CCCCCCccccc
Q 035392 6 CCPDCKLPGDDCPLIWGA--CN-HAFHLHCILKWVNSQ-TPQAHCPMCRR 51 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~~-~~~~~CP~Cr~ 51 (59)
.| ||..+..+..+.--. |. ..||..|+. +... .+.-.||.|++
T Consensus 11 yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 11 YC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 35 887543443444445 66 699999998 3322 12357999865
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=90.48 E-value=0.028 Score=26.81 Aligned_cols=47 Identities=21% Similarity=0.486 Sum_probs=31.7
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCcccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRRE 52 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~ 52 (59)
+..|.||... ...+.-..|.-.||..|+..-+... .+.-.||.|...
T Consensus 8 ~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRDG--GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSCC--SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCccCCCC--CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 5679999643 2355556888999999997543321 122469999764
No 96
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.29 E-value=0.098 Score=24.50 Aligned_cols=50 Identities=22% Similarity=0.419 Sum_probs=32.6
Q ss_pred CCcccccCcCCC--CCCeEecCCCCcccHHHHHHHHHhC--CCCCCCccccccc
Q 035392 4 DGCCPDCKLPGD--DCPLIWGACNHAFHLHCILKWVNSQ--TPQAHCPMCRREW 53 (59)
Q Consensus 4 ~~~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~w~~~~--~~~~~CP~Cr~~~ 53 (59)
+..|+||..+.+ ...|.-..|...||..|+.--.... .....||.|+..-
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 356999976542 3345556888999999986532211 1236899997653
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=90.13 E-value=0.29 Score=23.26 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCcccccCcCCC--CCCeEec-CCCCcccHHHHHH
Q 035392 4 DGCCPDCKLPGD--DCPLIWG-ACNHAFHLHCILK 35 (59)
Q Consensus 4 ~~~C~IC~~~~~--~~~~~~~-~C~H~fh~~Ci~~ 35 (59)
...|++|..+.. ...+.-. .|.-.||..|+.-
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 357999986543 2344555 7889999999743
No 98
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=90.05 E-value=0.023 Score=27.42 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=28.7
Q ss_pred cccccCcCCCC-CCeEecCCCCcccHHHHHHHHHhCCCCCCCccccc
Q 035392 6 CCPDCKLPGDD-CPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRR 51 (59)
Q Consensus 6 ~C~IC~~~~~~-~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~ 51 (59)
.| ||..+.++ ..|.-..|.-.||..|+.--.........||.|+.
T Consensus 21 ~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 21 TC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred Ee-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 46 88654443 34556678999999998643221112357998865
No 99
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=89.73 E-value=0.019 Score=27.04 Aligned_cols=43 Identities=21% Similarity=0.545 Sum_probs=25.8
Q ss_pred cccccCcCCCCCCeEecC--CC-CcccHHHHHHHHHhC-CCCCCCccccc
Q 035392 6 CCPDCKLPGDDCPLIWGA--CN-HAFHLHCILKWVNSQ-TPQAHCPMCRR 51 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~~-~~~~~CP~Cr~ 51 (59)
.| ||.....+..+.--. |. ..||..|+. +... .+.-.||.|++
T Consensus 12 ~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 12 YC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred EE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 35 887543443343345 55 689999997 3332 12357998865
No 100
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.67 E-value=0.56 Score=21.81 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=26.5
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+...|+.|..+......++..=+..||.+| ..|-.|+.++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C-----------F~C~~C~~~L~ 44 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHC-----------FLCSGCEQPLG 44 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTT-----------CBCTTTCCBTT
T ss_pred cCCCCccCCCccccCccEEEECccccCccc-----------CeECCCCCcCC
Confidence 456788897665532122335578899877 46777877664
No 101
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.34 E-value=0.5 Score=32.97 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=37.5
Q ss_pred CCCCcccccCcCCCCCCeEecCCC-CcccHHHHHHHHHhCCCCCCCcccccccccc
Q 035392 2 AFDGCCPDCKLPGDDCPLIWGACN-HAFHLHCILKWVNSQTPQAHCPMCRREWQFK 56 (59)
Q Consensus 2 ~~~~~C~IC~~~~~~~~~~~~~C~-H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~ 56 (59)
|-+-.|||=++...+ |++ ++-| +.|-+..|.+|+.++ .+||.=|.++...
T Consensus 889 P~~F~cPIs~~lM~D-PVi-lpsG~~TydR~~I~~wl~~~---~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD-PVI-LPASKMNIDRSTIKAHLLSD---STDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSS-EEE-CTTTCCEEEHHHHHHHHTTC---CBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhC-CeE-cCCCCEEECHHHHHHHHhcC---CCCCCCCCCCCcc
Confidence 344568888655444 554 4766 699999999999875 7999999887653
No 102
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=89.08 E-value=0.031 Score=31.98 Aligned_cols=47 Identities=28% Similarity=0.537 Sum_probs=31.7
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCcccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRRE 52 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~ 52 (59)
++.|.+|.... ..+.-..|...||..|+..-+... .+.-.||.|+..
T Consensus 7 ~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 7 EDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 56799996432 244456888999999987655432 122479999864
No 103
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=89.05 E-value=0.39 Score=23.19 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=30.8
Q ss_pred CCcccccCcCC---CCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccc
Q 035392 4 DGCCPDCKLPG---DDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRE 52 (59)
Q Consensus 4 ~~~C~IC~~~~---~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~ 52 (59)
+..|.||.... .+..+.-..|.-.||..|+..-. ...+.=.||.|+..
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~-vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-IPEGQWLCRHCLQS 66 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS-CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc-CCCCCcCCccCcCc
Confidence 56799997542 23344456888999999987532 12223478888653
No 104
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=89.03 E-value=0.058 Score=24.46 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCCcccccCcCCCC-CCeEecCCCCcccHHHHHHHHHhCCCCCCCccccc
Q 035392 3 FDGCCPDCKLPGDD-CPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRR 51 (59)
Q Consensus 3 ~~~~C~IC~~~~~~-~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~ 51 (59)
+|..=-||..+.++ ..+.-..|+--||..|+.--.........||.|+.
T Consensus 2 ~d~~~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCBCSTTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CcCeEEEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 34443477654333 44555678899999998643322222467998865
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=88.84 E-value=0.028 Score=27.83 Aligned_cols=46 Identities=33% Similarity=0.643 Sum_probs=27.0
Q ss_pred cccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhCCC-C-CCCccccc
Q 035392 6 CCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQTP-Q-AHCPMCRR 51 (59)
Q Consensus 6 ~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~~~-~-~~CP~Cr~ 51 (59)
.|.||....+ +..+.-..|...||..|+..-+..... . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 3555543222 223444578899999999865543221 2 37998875
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.67 E-value=0.12 Score=25.11 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=29.8
Q ss_pred cccccCcCCC-CCCeEecCCCCcccHHHHHHHHHh------CCCCCCCcccccccc
Q 035392 6 CCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNS------QTPQAHCPMCRREWQ 54 (59)
Q Consensus 6 ~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~------~~~~~~CP~Cr~~~~ 54 (59)
.| ||..+.. ...|.-..|.-.||..|+.--... ......||.|+....
T Consensus 18 ~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 18 YC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred EE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 46 7865544 234555688999999998532211 112378999986543
No 107
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.64 E-value=0.057 Score=27.65 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=28.6
Q ss_pred cccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccc
Q 035392 6 CCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRR 51 (59)
Q Consensus 6 ~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~ 51 (59)
.| ||....+ +..+.-..|.-.||..|+..-.......-.||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 36 7865433 334555688899999998653322212358999974
No 108
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.16 E-value=0.57 Score=22.80 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=30.2
Q ss_pred cccccCcCC--CCCCeEecCCCCcccHHHHHHHHHhC--CCCCCCccccccc
Q 035392 6 CCPDCKLPG--DDCPLIWGACNHAFHLHCILKWVNSQ--TPQAHCPMCRREW 53 (59)
Q Consensus 6 ~C~IC~~~~--~~~~~~~~~C~H~fh~~Ci~~w~~~~--~~~~~CP~Cr~~~ 53 (59)
.| ||..+. +...|.-..|.-.||..|+.--.... .....||.|+...
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 35 887554 33455666889999999986432211 1236899998753
No 109
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=87.18 E-value=0.15 Score=28.86 Aligned_cols=48 Identities=25% Similarity=0.573 Sum_probs=31.7
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRREW 53 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~~ 53 (59)
++.|.+|.... ..+....|.-.||..|+..-+... .+.-.||.|+..-
T Consensus 2 ~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCS--SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCC--ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 56799996432 234446788999999997544321 2234799998653
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.14 E-value=0.72 Score=23.28 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=25.3
Q ss_pred CcccccCcCCCCCCeEec--CCCCcccHHHHHHHHHhC
Q 035392 5 GCCPDCKLPGDDCPLIWG--ACNHAFHLHCILKWVNSQ 40 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~--~C~H~fh~~Ci~~w~~~~ 40 (59)
..|.+|.+..++.-.+.- .=+|.||.-|-...++.+
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 569999876665444311 126999999999998764
No 111
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.84 E-value=1.3 Score=27.85 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=32.7
Q ss_pred CcccccCcCCCCCCeEecCCCCc--ccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHA--FHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~--fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
..||+=.... ..|+....|.|. |-..=+.+..... ..-.||+|.+.+.+.+
T Consensus 250 L~CPlS~~ri-~~PvRg~~C~HlQCFDl~sfL~~~~~~-~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRM-KYPSKSINCKHLQCFDALWFLHSQLQI-PTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBC-SSEEEETTCCSSCCEEHHHHHHHHHHS-CCCBCTTTCCBCCGGG
T ss_pred ecCCCccccc-cccCcCCcCCCcceECHHHHHHHhhcC-CceeCCCCCcccCHHH
Confidence 4577664332 346667799998 6655555544432 2358999999876654
No 112
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=86.81 E-value=0.35 Score=25.20 Aligned_cols=12 Identities=25% Similarity=0.869 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHh
Q 035392 28 FHLHCILKWVNS 39 (59)
Q Consensus 28 fh~~Ci~~w~~~ 39 (59)
||+.||.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 113
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=86.74 E-value=0.36 Score=25.14 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHh
Q 035392 28 FHLHCILKWVNS 39 (59)
Q Consensus 28 fh~~Ci~~w~~~ 39 (59)
||+.||.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 114
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=86.59 E-value=0.042 Score=26.04 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=26.3
Q ss_pred cccccCcCCCCCCeEecC--CC-CcccHHHHHHHHHhC-CCCCCCcccccc
Q 035392 6 CCPDCKLPGDDCPLIWGA--CN-HAFHLHCILKWVNSQ-TPQAHCPMCRRE 52 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~ 52 (59)
.| ||........+.--. |. ..||..|+.- ... .+.-.||.|+..
T Consensus 13 yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 13 YC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSL--TYKPKGKWYCPKCRGD 60 (62)
T ss_dssp ET-TTTEECCSEEEECSCTTCSSCEEETGGGTC--SSCCSSCCCCHHHHTC
T ss_pred EE-ECCCCCCCCeeeeeCCCCCcccEecccCCc--CcCCCCCEECcCcccC
Confidence 35 886543333444445 54 7999999972 221 123579999753
No 115
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=86.45 E-value=0.62 Score=22.04 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=26.2
Q ss_pred CCCcccccCcCCCC--CCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDD--CPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~--~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+...|+.|..+..+ ....+..=+..||.+| ..|-.|+.++.
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C-----------F~C~~C~~~L~ 46 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSEC-----------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGG-----------CBCTTTCCBCS
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCccc-----------CChhhCCCcCC
Confidence 45679999765553 1122234577899888 46777777664
No 116
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=86.34 E-value=0.34 Score=25.25 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=23.1
Q ss_pred CCcccccCcCC--------CCCCeEecCCCCcccHHHHHHH
Q 035392 4 DGCCPDCKLPG--------DDCPLIWGACNHAFHLHCILKW 36 (59)
Q Consensus 4 ~~~C~IC~~~~--------~~~~~~~~~C~H~fh~~Ci~~w 36 (59)
+..|.||+... .+..+.-..|+..||..|+...
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CCcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 35799997432 1234555689999999998754
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=86.34 E-value=0.073 Score=25.73 Aligned_cols=47 Identities=30% Similarity=0.619 Sum_probs=27.8
Q ss_pred cccccCcCC-CCCCeEecCCCCcccHHHHHHHHHhC-CC-CCCCcccccc
Q 035392 6 CCPDCKLPG-DDCPLIWGACNHAFHLHCILKWVNSQ-TP-QAHCPMCRRE 52 (59)
Q Consensus 6 ~C~IC~~~~-~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~-~~~CP~Cr~~ 52 (59)
.|.||.... .+..+.-..|...||..|+..-+... .+ .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 355665322 22334445788999999998544332 11 2479999753
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=86.26 E-value=0.26 Score=25.49 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=31.4
Q ss_pred CcccccCcCC--CCCCeEec-CCCCcccHHHHHHHHH-------hCCCCCCCccccccccc
Q 035392 5 GCCPDCKLPG--DDCPLIWG-ACNHAFHLHCILKWVN-------SQTPQAHCPMCRREWQF 55 (59)
Q Consensus 5 ~~C~IC~~~~--~~~~~~~~-~C~H~fh~~Ci~~w~~-------~~~~~~~CP~Cr~~~~~ 55 (59)
..|+||..+. +...+.-- .|.-.||..|+.--.. .......||.|+.....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 4799998653 23334443 7889999999753211 01112579999875443
No 119
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.26 E-value=0.1 Score=25.68 Aligned_cols=47 Identities=23% Similarity=0.537 Sum_probs=29.3
Q ss_pred CcccccCcCC-CCCCeEecCCCCcccHHHHHHHHHhCC-C-CCCCccccc
Q 035392 5 GCCPDCKLPG-DDCPLIWGACNHAFHLHCILKWVNSQT-P-QAHCPMCRR 51 (59)
Q Consensus 5 ~~C~IC~~~~-~~~~~~~~~C~H~fh~~Ci~~w~~~~~-~-~~~CP~Cr~ 51 (59)
..|.||.... .+..+.-..|...||..|+..-+.... + .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3677886432 233444568889999999985443321 1 236888864
No 120
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=86.03 E-value=1.2 Score=21.19 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=25.3
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
...|+.|.........++..=+..||.+| ..|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C-----------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC-----------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT-----------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEECcccccccc-----------CchhhCCCccCC
Confidence 45788887655422222234578899877 467788776643
No 121
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=85.95 E-value=0.88 Score=21.12 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=24.3
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+...|+.|..+.......+..=+..||.+| ..|-.|+.++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C-----------F~C~~C~~~L~ 44 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGC-----------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTT-----------CBCSSSCCBCT
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccC-----------CcccccCCcCC
Confidence 345788887554431111124467888877 46777777663
No 122
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=85.61 E-value=0.56 Score=21.80 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=25.3
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+...|+.|..+......++..=+..||.+| ..|-.|+.++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C-----------F~C~~C~~~L~ 44 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETC-----------FICHRCQQPIG 44 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTT-----------TCCSSSCCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccC-----------CcccccCCccC
Confidence 456788897655532212224567888877 46777777654
No 123
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.46 E-value=0.24 Score=22.64 Aligned_cols=46 Identities=22% Similarity=0.598 Sum_probs=30.4
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhC-CCCCCCccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRR 51 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~ 51 (59)
+..|.+|... ...+.-..|.-.||..|+..-+... .+.-.||.|..
T Consensus 9 ~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 5679999653 2355556889999999997544322 11236888854
No 124
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=85.22 E-value=0.19 Score=22.68 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=26.4
Q ss_pred cccccCcCCCC--CCeEec-CCCCcccHHHHHHHHHh-CCCCCCCcccc
Q 035392 6 CCPDCKLPGDD--CPLIWG-ACNHAFHLHCILKWVNS-QTPQAHCPMCR 50 (59)
Q Consensus 6 ~C~IC~~~~~~--~~~~~~-~C~H~fh~~Ci~~w~~~-~~~~~~CP~Cr 50 (59)
.|.+|..+.++ ..+.-. .|.-.||..|+.--... ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 46788765432 234444 68889999997642221 00236899885
No 125
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=85.18 E-value=1.7 Score=27.18 Aligned_cols=51 Identities=24% Similarity=0.459 Sum_probs=33.2
Q ss_pred CcccccCcCCCCCCeEecCCCCc--ccHHHHHHHHHhCCCCCCCccccccccccC
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHA--FHLHCILKWVNSQTPQAHCPMCRREWQFKG 57 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~--fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~~~ 57 (59)
..||+=.... ..|+....|.|. |-..=+.+..... +.-.||+|.+.+.+++
T Consensus 216 L~CPlS~~ri-~~P~Rg~~C~HlqCFDl~sfL~~~~~~-~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRL-TIPCRAVTCTHLQCFDAALYLQMNEKK-PTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBC-SSEEEETTCCCCCCEEHHHHHHHHHHS-CCCBCTTTCSBCCGGG
T ss_pred eeCCCcccee-ccCCcCCCCCCCccCCHHHHHHHHhhC-CCeECCCCCcccCHHH
Confidence 4576664333 346667799998 6665555554443 2358999999887654
No 126
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=84.60 E-value=0.45 Score=22.38 Aligned_cols=41 Identities=24% Similarity=0.551 Sum_probs=25.4
Q ss_pred cccccCcCCCCCC-eEecCCCCcccHHHHHHHHHhCCCCCCCccc
Q 035392 6 CCPDCKLPGDDCP-LIWGACNHAFHLHCILKWVNSQTPQAHCPMC 49 (59)
Q Consensus 6 ~C~IC~~~~~~~~-~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~C 49 (59)
.|-.|...+.+.. ..-..|++.|+.+|=.---++ -..||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~---Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS---LHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT---SCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh---ccCCcCC
Confidence 4777865443322 345689999999994332222 2479887
No 127
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.18 E-value=1.1 Score=20.87 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=25.7
Q ss_pred CCCcccccCcCCCC---CCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDD---CPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~---~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+...|+.|..+..+ ..++ ..=+..||.+| ..|-.|+.++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~C-----------F~C~~C~~~L~ 46 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYI-SFEERQWHNDC-----------FNCKKCSLSLV 46 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCE-ECSSCEECTTT-----------CBCSSSCCBCT
T ss_pred CCCCCcCCCccccCCCCcceE-EECCcccCccc-----------CEeccCCCcCC
Confidence 34678889765543 1222 24578899877 46777877664
No 128
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=83.27 E-value=0.56 Score=24.55 Aligned_cols=27 Identities=26% Similarity=0.719 Sum_probs=17.4
Q ss_pred ecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 21 WGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 21 ~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
...||+.|. ........||.|++.+..
T Consensus 70 C~~CG~~F~--------~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 70 CRKCGFVFK--------AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp BTTTCCBCC--------CCSSCCSSCSSSCCCCBC
T ss_pred hhhCcCeec--------ccCCCCCCCcCCCCCccC
Confidence 458999991 111123689999987654
No 129
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=82.77 E-value=0.3 Score=26.88 Aligned_cols=47 Identities=23% Similarity=0.501 Sum_probs=29.8
Q ss_pred CcccccCcCCC--CCCeEecCCCCcccHHHHHHHHHh--CCCCCCCcccccc
Q 035392 5 GCCPDCKLPGD--DCPLIWGACNHAFHLHCILKWVNS--QTPQAHCPMCRRE 52 (59)
Q Consensus 5 ~~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~w~~~--~~~~~~CP~Cr~~ 52 (59)
..| +|..+.+ +..+.-..|.-.||..|+.--... ....-.||.|+..
T Consensus 9 ~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 9 LYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred cEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 358 9975432 334555688899999998532221 1223689999863
No 130
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=82.26 E-value=1.2 Score=20.44 Aligned_cols=41 Identities=20% Similarity=0.427 Sum_probs=25.7
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
....|+.|.........++..=+..||.+| ..|-.|.+++.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~C-----------F~C~~C~~~L~ 50 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC-----------FVCAQCFQQFP 50 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTT-----------SSCTTTCCCCG
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCC-----------CcccCCCCCCC
Confidence 346799997655533322224467889877 45777877664
No 131
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=82.09 E-value=0.28 Score=28.85 Aligned_cols=47 Identities=30% Similarity=0.610 Sum_probs=26.9
Q ss_pred cccccCcCC-CCCCeEecCCCCcccHHHHHHHHHhCC-C-CCCCcccccc
Q 035392 6 CCPDCKLPG-DDCPLIWGACNHAFHLHCILKWVNSQT-P-QAHCPMCRRE 52 (59)
Q Consensus 6 ~C~IC~~~~-~~~~~~~~~C~H~fh~~Ci~~w~~~~~-~-~~~CP~Cr~~ 52 (59)
.|.+|.... .+..+.-..|...||..|+..-+.... + .=.||.|+..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 577886432 234555568999999999986544321 1 2369999753
No 132
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.50 E-value=1.5 Score=20.20 Aligned_cols=39 Identities=23% Similarity=0.524 Sum_probs=24.9
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+...|+.|..+..+..+ ..=+..||.+| ..|-.|++++.
T Consensus 4 ~~~~C~~C~~~I~~~~~--~a~~~~~H~~C-----------F~C~~C~~~L~ 42 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGGV--TYREQPWHKEC-----------FVCTACRKQLS 42 (70)
T ss_dssp CCCBCSSSCCBCCSSEE--ESSSSEEETTT-----------SBCSSSCCBCT
T ss_pred CCCCCcccCCeeccceE--EECccccCCCC-----------CccCCCCCcCC
Confidence 34578888765544332 34577888877 46777777654
No 133
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.20 E-value=1.7 Score=20.45 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=24.9
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+...|+-|..+..+..+ ..=+..||.+| ..|-.|..++.
T Consensus 4 ~~~~C~~C~~~I~~~~v--~a~~~~wH~~C-----------F~C~~C~~~L~ 42 (73)
T 1wig_A 4 GSSGCDSCEKYITGRVL--EAGEKHYHPSC-----------ALCVRCGQMFA 42 (73)
T ss_dssp SCCSCSSSCCCCSSCCB--CCSSCCBCTTT-----------SCCSSSCCCCC
T ss_pred CcCCcccCCCEecCeeE--EeCCCCCCCCc-----------CEeCCCCCCCC
Confidence 34578888765554333 35577888877 45777776654
No 134
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=80.89 E-value=2.7 Score=20.33 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=24.8
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
..|+.|.....+..+ ..-+..||.+| ..|-.|+..+.
T Consensus 26 ~~C~~C~~~I~~~~~--~a~~~~~H~~C-----------F~C~~C~~~L~ 62 (89)
T 1x64_A 26 PLCDKCGSGIVGAVV--KARDKYRHPEC-----------FVCADCNLNLK 62 (89)
T ss_dssp CBCTTTCCBCCSCCE--ESSSCEECTTT-----------CCCSSSCCCTT
T ss_pred CCcccCCCEecccEE--EECCceECccC-----------CEecCCCCCCC
Confidence 468888765554333 25578899887 46777877664
No 135
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=80.82 E-value=1.2 Score=24.86 Aligned_cols=35 Identities=23% Similarity=0.513 Sum_probs=23.1
Q ss_pred CCCcccccCcCCCCCCeEec--CCCCcccHHHHHHHHHh
Q 035392 3 FDGCCPDCKLPGDDCPLIWG--ACNHAFHLHCILKWVNS 39 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~--~C~H~fh~~Ci~~w~~~ 39 (59)
++..|.||-+. . ..+.-. .|...||..||...+..
T Consensus 78 ~~~yC~wC~~G-g-~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG-R-EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC-S-EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC-C-eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 45678888432 2 222222 68899999999998643
No 136
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.53 E-value=2.1 Score=20.30 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=24.7
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|.....+..+ ..-+..||.+| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~--~a~~~~~H~~C-----------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFV--KLRDRHRHPEC-----------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCE--ECSSCEECTTT-----------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEE--EECcceeCcCc-----------CeeCCCCCCCC
Confidence 3568889766554433 35578899887 35777766543
No 137
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=80.43 E-value=0.6 Score=26.47 Aligned_cols=49 Identities=22% Similarity=0.418 Sum_probs=30.7
Q ss_pred CcccccCcCCCC-----CCeEecCCCCcccHHHHHHH------HHhC--CCCCCCccccccc
Q 035392 5 GCCPDCKLPGDD-----CPLIWGACNHAFHLHCILKW------VNSQ--TPQAHCPMCRREW 53 (59)
Q Consensus 5 ~~C~IC~~~~~~-----~~~~~~~C~H~fh~~Ci~~w------~~~~--~~~~~CP~Cr~~~ 53 (59)
..||||..+..+ ..+.-..|...||..|+.-- +... .....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999754332 24555688999999997431 1100 0026899998753
No 138
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.84 E-value=1 Score=21.10 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=23.8
Q ss_pred CCcccccCcCCC--CCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGD--DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|..... +..+. .=+..||.+| ..|-.|++++.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C-----------F~C~~C~~~L~ 50 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN--SNGELYHEQC-----------FVCAQCFQQFP 50 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE--ETTEEECTTT-----------CCCTTTCCCCG
T ss_pred CCCchhcCCccCCCceEEE--eCccEecccc-----------CeECCCCCCCC
Confidence 457888876553 22222 3467888877 46777777654
No 139
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.71 E-value=2.1 Score=20.32 Aligned_cols=39 Identities=23% Similarity=0.485 Sum_probs=23.7
Q ss_pred CCcccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|..+.. +..++ ..=+..||.+| ..|-.|++++.
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C-----------F~C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSREL-FYEDRHFHEGC-----------FRCCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCBC-CCSSCCCBTTT-----------SBCTTTCCBCS
T ss_pred CCcCccCCCccccCcEEE-EeCCccccccC-----------CeecCCCCccC
Confidence 346888866544 12222 23477889877 46777777664
No 140
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=79.70 E-value=1.5 Score=20.51 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=24.9
Q ss_pred CCcccccCcCCCC---CCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDD---CPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~---~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|..+..+ ....+..=+..||.+| ..|-.|++++.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C-----------F~C~~C~~~L~ 57 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYC-----------FHCKKCSVNLA 57 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTT-----------CBCSSSCCBCT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCccc-----------CEehhcCCCCC
Confidence 3568888665443 1122234477899877 46888887765
No 141
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.48 E-value=1.5 Score=20.16 Aligned_cols=38 Identities=16% Similarity=0.463 Sum_probs=24.2
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|..+..+..+. .=+..||.+| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~--a~~~~~H~~C-----------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGIT--YQDQPWHADC-----------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEE--ETTEEECTTT-----------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEE--ECccccccCc-----------CEECCCCCCCC
Confidence 45688887655444333 3467888777 45777777664
No 142
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=79.43 E-value=0.95 Score=21.32 Aligned_cols=8 Identities=25% Similarity=0.771 Sum_probs=4.2
Q ss_pred CCcccHHH
Q 035392 25 NHAFHLHC 32 (59)
Q Consensus 25 ~H~fh~~C 32 (59)
+..||.+|
T Consensus 20 ~~~~H~~C 27 (76)
T 1iml_A 20 GKDWHRPC 27 (76)
T ss_dssp TEEEETTT
T ss_pred CccccCCC
Confidence 45555544
No 143
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.27 E-value=1.5 Score=20.56 Aligned_cols=39 Identities=18% Similarity=0.503 Sum_probs=25.7
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|..+......+ ..=+..||.+| ..|..|+.++.
T Consensus 9 ~~~C~~C~~~I~~~~~v-~a~~~~~H~~C-----------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV-SSLGKDWHKFC-----------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEE-EETTEEEETTT-----------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEE-EECCeEeeCCC-----------CCCCCCCCccC
Confidence 45788897655533333 24577899877 56888887765
No 144
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.98 E-value=3 Score=19.59 Aligned_cols=38 Identities=16% Similarity=0.400 Sum_probs=24.4
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|.....+..+ ..=+..||.+| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~v--~a~~~~~H~~C-----------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQGGV--TYRDQPWHREC-----------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSCCE--ESSSSEECTTT-----------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecCcEE--EECCchhhhhh-----------CCcccCCCcCC
Confidence 3568888655544333 25577888877 46777877664
No 145
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=78.79 E-value=0.082 Score=26.06 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.5
Q ss_pred CCCCcccHHHHHHHHH
Q 035392 23 ACNHAFHLHCILKWVN 38 (59)
Q Consensus 23 ~C~H~fh~~Ci~~w~~ 38 (59)
.|++.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999888733
No 146
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=78.77 E-value=2.2 Score=26.92 Aligned_cols=33 Identities=24% Similarity=0.656 Sum_probs=23.6
Q ss_pred CCCcccccCcCCCCCCeEec--CCCCcccHHHHHHHH
Q 035392 3 FDGCCPDCKLPGDDCPLIWG--ACNHAFHLHCILKWV 37 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~--~C~H~fh~~Ci~~w~ 37 (59)
++..|.+|-+. ...+.-. .|...||..||...+
T Consensus 92 ~~~yCr~C~~G--g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 92 YQSYCSICCSG--ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SBCSCTTTCCC--SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CcccceEcCCC--CeEEEeCCCCCCcchHHHHHHHhc
Confidence 45678888532 2234444 888999999999987
No 147
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=78.26 E-value=2.9 Score=20.76 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=22.0
Q ss_pred CCCcccccCcCCCCCCeE--ecCCCCcccHHHHHHH
Q 035392 3 FDGCCPDCKLPGDDCPLI--WGACNHAFHLHCILKW 36 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~--~~~C~H~fh~~Ci~~w 36 (59)
+...|.||.....+..+. ...|.-.||..|-.+-
T Consensus 16 ~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 16 WKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred hcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHC
Confidence 467899995432222222 2368889999998763
No 148
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.82 E-value=1.9 Score=20.44 Aligned_cols=38 Identities=21% Similarity=0.477 Sum_probs=24.0
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|..+..+..+. .=+..||.+| ..|-.|++++.
T Consensus 15 ~~~C~~C~~~I~~~~v~--a~~~~wH~~C-----------F~C~~C~~~L~ 52 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVS--ALGKTYHPDC-----------FVCAVCRLPFP 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEE--ETTEEECTTT-----------SSCSSSCCCCC
T ss_pred CCcCccccCEeccceEE--ECCceeCccC-----------CccccCCCCCC
Confidence 35788887655543332 4577888877 45667766654
No 149
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.73 E-value=2 Score=20.34 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=23.8
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|..+..+..+ ..=+..||.+| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~--~a~~~~~H~~C-----------F~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFM--VAGEFKYHPEC-----------FACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCCBCCSCCB--CCTTCCBCTTS-----------CBCTTTCCBCC
T ss_pred CCcCccCCCCcCceEE--EECCceecccc-----------CCccCCCCccC
Confidence 3468888655543333 24477888777 46777877664
No 150
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.50 E-value=3.3 Score=20.09 Aligned_cols=39 Identities=21% Similarity=0.533 Sum_probs=23.0
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|.........+ ..=+..||.+| ..|-.|..++.
T Consensus 15 ~~~C~~C~~~I~~~~~v-~a~~~~~H~~C-----------F~C~~C~~~L~ 53 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL-LANQQVFHISC-----------FRCSYCNNKLS 53 (91)
T ss_dssp SCBCTTTCCBCCTTSEE-ECSSSEEETTT-----------CBCTTTCCBCC
T ss_pred CCcCccCCCccCCceeE-EECCCEECCCC-----------CeeCCCCCCCC
Confidence 45688887655432232 35567888777 34656655543
No 151
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=77.41 E-value=0.5 Score=22.81 Aligned_cols=11 Identities=0% Similarity=-0.118 Sum_probs=5.0
Q ss_pred CCccccccccc
Q 035392 45 HCPMCRREWQF 55 (59)
Q Consensus 45 ~CP~Cr~~~~~ 55 (59)
.||.|+..|..
T Consensus 28 iC~~cg~~YPI 38 (69)
T 2pk7_A 28 ISKGAGLAYPI 38 (69)
T ss_dssp EETTTTEEEEE
T ss_pred EcCCCCcEecC
Confidence 45555444433
No 152
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=76.88 E-value=1.9 Score=19.61 Aligned_cols=39 Identities=18% Similarity=0.421 Sum_probs=25.7
Q ss_pred CCCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 3 FDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 3 ~~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+...|+.|..+..+. . +..=+..||.+| ..|-.|+.++.
T Consensus 4 ~~~~C~~C~~~I~~~-~-~~a~~~~~H~~C-----------F~C~~C~~~L~ 42 (66)
T 1nyp_A 4 GVPICGACRRPIEGR-V-VNAMGKQWHVEH-----------FVCAKCEKPFL 42 (66)
T ss_dssp CCCEETTTTEECCSC-E-ECCTTSBEETTT-----------CBCTTTCCBCS
T ss_pred CCCCCcccCCEecce-E-EEECccccccCc-----------CEECCCCCCCC
Confidence 446788887655432 2 235577899877 46888877664
No 153
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.20 E-value=2.2 Score=20.65 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=28.7
Q ss_pred cccccCcC-CCCCCeEec--CCCCcccHHHHHHHHHh------CCCCCCCccccccc
Q 035392 6 CCPDCKLP-GDDCPLIWG--ACNHAFHLHCILKWVNS------QTPQAHCPMCRREW 53 (59)
Q Consensus 6 ~C~IC~~~-~~~~~~~~~--~C~H~fh~~Ci~~w~~~------~~~~~~CP~Cr~~~ 53 (59)
.| ||... .....|.-- .|...||..|+.---.. ......||.|+..-
T Consensus 18 ~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 18 RC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred Ee-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 46 78654 233344444 79999999998642221 01236899998653
No 154
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.75 E-value=0.61 Score=21.77 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=9.6
Q ss_pred CCCccccccccccC
Q 035392 44 AHCPMCRREWQFKG 57 (59)
Q Consensus 44 ~~CP~Cr~~~~~~~ 57 (59)
..||.|+..+...+
T Consensus 7 k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 7 KECPKCHVTIEKDG 20 (60)
T ss_dssp CCCTTTCCCCSSCC
T ss_pred eECcCCCCeeEeCC
Confidence 56888887766543
No 155
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.72 E-value=2 Score=20.40 Aligned_cols=38 Identities=32% Similarity=0.558 Sum_probs=23.6
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|..+..+..+. .=+..||.+| ..|..|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~--a~~~~~H~~C-----------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDRILR--AMGKAYHPGC-----------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEE--ETTEEECTTT-----------CBCSSSCCBCT
T ss_pred CCccccCCCeecceeEE--ECCccccHHh-----------cCcccCCCccC
Confidence 34677776555543332 4467888777 46777777654
No 156
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.40 E-value=2.5 Score=19.92 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=23.8
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
..|+.|..+..+..+. .=+..||.+| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~~v~--a~~~~~H~~C-----------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLS--AMDTVWHPEC-----------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCSSCEE--ETTEEECTTT-----------CBCSSSCCBSCS
T ss_pred CccccCCCeecceeEE--ECCCeEecCc-----------CChhhCCCCCCC
Confidence 4678886555543332 3467788777 467777776643
No 157
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.18 E-value=0.45 Score=24.00 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=31.3
Q ss_pred CCcccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhC-CCCCCCcccccc
Q 035392 4 DGCCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQ-TPQAHCPMCRRE 52 (59)
Q Consensus 4 ~~~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~ 52 (59)
+..|.||....+ ...+.-..|...||..|+..-+... .+.=.||.|+..
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 346999965432 3455566889999999997433321 112369999753
No 158
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.51 E-value=2.4 Score=19.44 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=23.4
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|..+..+..+. .=+..||.+| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~--a~~~~~H~~C-----------F~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIK--AMNNSWHPEC-----------FRCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCSCCEE--ETTEEECTTT-----------SBCSSSCCBCS
T ss_pred CCcCccCCCEecceEEE--ECcccccccC-----------CEeCCCCCcCC
Confidence 35688887655443332 3467788777 45777776654
No 159
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=74.39 E-value=1.1 Score=23.26 Aligned_cols=43 Identities=21% Similarity=0.521 Sum_probs=25.4
Q ss_pred CCcccccCcCCCCCCeEec--CCCCcccHHHHHHHHHhC-CCCCCCcccc
Q 035392 4 DGCCPDCKLPGDDCPLIWG--ACNHAFHLHCILKWVNSQ-TPQAHCPMCR 50 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~--~C~H~fh~~Ci~~w~~~~-~~~~~CP~Cr 50 (59)
++.|.+|.+. +..+.-. .|...||..|+. +... .+.-.||.|.
T Consensus 15 ~~~C~~C~~~--G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGDG--GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCCC--SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCcCCCC--CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 4679999632 2233333 588899999997 3321 1123587664
No 160
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.09 E-value=2.9 Score=19.85 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=23.7
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
..|+-|.....+..+ ..=+..||.+| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v--~a~~~~~H~~C-----------F~C~~C~~~L~ 52 (79)
T 2cor_A 16 YICQKCHAIIDEQPL--IFKNDPYHPDH-----------FNCANCGKELT 52 (79)
T ss_dssp CBCTTTCCBCCSCCC--CCSSSCCCTTT-----------SBCSSSCCBCC
T ss_pred CCCccCCCEecceEE--EECcceeCCCC-----------CEeCCCCCccC
Confidence 468888655443333 24567888777 46777877665
No 161
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.99 E-value=1.7 Score=21.19 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=23.8
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
..|+.|.....+..+ ..=+..||.+| ..|-.|+.++.
T Consensus 26 ~~C~~C~~~I~~~~v--~a~~~~~H~~C-----------F~C~~C~~~L~ 62 (90)
T 2dar_A 26 PMCAHCNQVIRGPFL--VALGKSWHPEE-----------FNCAHCKNTMA 62 (90)
T ss_dssp CBBSSSCCBCCSCEE--EETTEEECTTT-----------CBCSSSCCBCS
T ss_pred CCCccCCCEecceEE--EECCccccccC-----------CccCCCCCCCC
Confidence 468888665543322 24577888877 46777877664
No 162
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=71.53 E-value=2.9 Score=21.56 Aligned_cols=37 Identities=19% Similarity=0.633 Sum_probs=21.9
Q ss_pred cccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCccccccc
Q 035392 6 CCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREW 53 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~ 53 (59)
.|+.|.........++..=+..||..| ..|-.|.+.+
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~C-----------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLEC-----------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTT-----------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEEECCccccccc-----------CccccCCCCC
Confidence 688887554421111123477888877 4577777665
No 163
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=71.13 E-value=3.5 Score=20.24 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=6.4
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..|..|.+++.
T Consensus 67 ~~C~~C~~~I~ 77 (101)
T 2cup_A 67 PKCKGCFKAIV 77 (101)
T ss_dssp CBCSSSCCBCC
T ss_pred CccccCCCccc
Confidence 35666666554
No 164
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=69.61 E-value=0.54 Score=22.62 Aligned_cols=11 Identities=0% Similarity=-0.082 Sum_probs=5.3
Q ss_pred CCccccccccc
Q 035392 45 HCPMCRREWQF 55 (59)
Q Consensus 45 ~CP~Cr~~~~~ 55 (59)
.||.|+..|..
T Consensus 30 vC~~c~~~YPI 40 (67)
T 2jny_A 30 VNERLNLAYRI 40 (67)
T ss_dssp EETTTTEEEEE
T ss_pred EcCCCCccccC
Confidence 45555544443
No 165
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=68.67 E-value=1.2 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=25.9
Q ss_pred cccccCcCCCCCCeEecCCC---CcccHHHHHHHHHhC-CCCCCCcc-ccc
Q 035392 6 CCPDCKLPGDDCPLIWGACN---HAFHLHCILKWVNSQ-TPQAHCPM-CRR 51 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~C~---H~fh~~Ci~~w~~~~-~~~~~CP~-Cr~ 51 (59)
.| ||.....+..|.-..|. -.||..|+.- ... .+.-.||. |++
T Consensus 28 yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl--~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 28 YC-FCRNVSYGPMVACDNPACPFEWFHYGCVGL--KQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CS-TTTCCCSSSEECCCSSSCSCSCEETTTSSC--SSCTTSCCCSSHHHHH
T ss_pred EE-EeCCCCCCCEEEecCCCCccccCcCccCCC--CcCCCCCccCChhhcc
Confidence 46 88754344344444544 6899999862 221 12357999 875
No 166
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.68 E-value=4.6 Score=19.26 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=23.0
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
..|+.|.........+ ..=+..||.+| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~e~v-~a~~~~wH~~C-----------F~C~~C~~~L~ 53 (82)
T 2co8_A 16 DLCALCGEHLYVLERL-CVNGHFFHRSC-----------FRCHTCEATLW 53 (82)
T ss_dssp CBCSSSCCBCCTTTBC-CBTTBCCBTTT-----------CBCSSSCCBCC
T ss_pred CCCcccCCCcccceEE-EECCCeeCCCc-----------CEEcCCCCCcC
Confidence 4688887654322222 23467889887 45777766554
No 167
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=67.22 E-value=1.6 Score=17.46 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=15.3
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHH
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCI 33 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci 33 (59)
.+.|+.|.........+ ..=|..||+.|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek~-~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKV-NCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCC-CSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeE-EECCeEecccCC
Confidence 45788886432211111 234677888773
No 168
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=65.63 E-value=3.6 Score=22.60 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCcccccCcC---CCCCCeEecCCCCcccHHHH
Q 035392 4 DGCCPDCKLP---GDDCPLIWGACNHAFHLHCI 33 (59)
Q Consensus 4 ~~~C~IC~~~---~~~~~~~~~~C~H~fh~~Ci 33 (59)
+..|.+|..+ .......-..|.|.+|..|-
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4679999854 33445666799999999996
No 169
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=65.46 E-value=1.9 Score=18.01 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=7.9
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..||+|.+.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 46888887654
No 170
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=63.69 E-value=2.7 Score=20.13 Aligned_cols=14 Identities=14% Similarity=0.591 Sum_probs=10.1
Q ss_pred CCCccccccccccC
Q 035392 44 AHCPMCRREWQFKG 57 (59)
Q Consensus 44 ~~CP~Cr~~~~~~~ 57 (59)
-.||+|+.++.+..
T Consensus 9 L~CP~ck~~L~~~~ 22 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQ 22 (68)
T ss_dssp CBCSSSCCBCEEET
T ss_pred eECCCCCCcCeEeC
Confidence 57888888776643
No 171
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.63 E-value=6.6 Score=18.66 Aligned_cols=38 Identities=24% Similarity=0.559 Sum_probs=24.4
Q ss_pred CCcccccCcCCC-CCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGD-DCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~-~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+-|..+.. ...+. .=+..||.+| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C-----------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL--ALDKQWHVSC-----------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE--ETTEEECTTT-----------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEE--ECCccccccc-----------CCcCcCCCCcC
Confidence 356888876554 22332 3467889877 56888877664
No 172
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=63.37 E-value=2.7 Score=20.13 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=9.9
Q ss_pred CCCccccccccccC
Q 035392 44 AHCPMCRREWQFKG 57 (59)
Q Consensus 44 ~~CP~Cr~~~~~~~ 57 (59)
-.||+|+.++.+..
T Consensus 9 L~CP~ck~~L~~~~ 22 (68)
T 2hf1_A 9 LVCPLCKGPLVFDK 22 (68)
T ss_dssp CBCTTTCCBCEEET
T ss_pred eECCCCCCcCeEeC
Confidence 46888888776543
No 173
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=63.18 E-value=4.5 Score=21.91 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=5.1
Q ss_pred CCcccHHHHHH
Q 035392 25 NHAFHLHCILK 35 (59)
Q Consensus 25 ~H~fh~~Ci~~ 35 (59)
|..||..|..+
T Consensus 52 g~~yC~~~y~~ 62 (169)
T 2rgt_A 52 ESVYCKDDFFK 62 (169)
T ss_dssp SCEECHHHHHH
T ss_pred Ceeeecccccc
Confidence 44455554443
No 174
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=62.81 E-value=2.1 Score=17.13 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=7.6
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..||+|+....
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 46888887543
No 175
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=62.01 E-value=5.4 Score=20.74 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=25.9
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
..|+-|..+..+..++ ..-+..||.+| ..|-.|+.++.
T Consensus 62 ~~C~~C~~~I~~~~~v-~a~~~~wH~~C-----------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLL-YAMDSYWHSRC-----------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEE-EETTEEEETTT-----------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEE-EeCCcEEcccc-----------cCcCcCCCccc
Confidence 4688887665544322 24577899888 56888888774
No 176
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=61.40 E-value=3.4 Score=22.21 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=21.3
Q ss_pred CCcccccCcCCC---CCCeEecCCCCcccHHHHH
Q 035392 4 DGCCPDCKLPGD---DCPLIWGACNHAFHLHCIL 34 (59)
Q Consensus 4 ~~~C~IC~~~~~---~~~~~~~~C~H~fh~~Ci~ 34 (59)
+..|.+|..++. .....-..|.|.+|..|-.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 467999985432 3344556889999988844
No 177
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=61.00 E-value=2.9 Score=20.14 Aligned_cols=14 Identities=29% Similarity=0.942 Sum_probs=10.1
Q ss_pred CCCccccccccccC
Q 035392 44 AHCPMCRREWQFKG 57 (59)
Q Consensus 44 ~~CP~Cr~~~~~~~ 57 (59)
-.||+|+.++.+..
T Consensus 9 L~CP~ck~~L~~~~ 22 (70)
T 2js4_A 9 LVCPVCKGRLEFQR 22 (70)
T ss_dssp CBCTTTCCBEEEET
T ss_pred eECCCCCCcCEEeC
Confidence 57888888776543
No 178
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=59.68 E-value=6.7 Score=18.57 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=20.4
Q ss_pred CCcccccCcCCC--CCCeEecCCCCcccHHHHHH
Q 035392 4 DGCCPDCKLPGD--DCPLIWGACNHAFHLHCILK 35 (59)
Q Consensus 4 ~~~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~ 35 (59)
+..|.+|...+. ...-.--.||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 457999964432 11222348999999999643
No 179
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=59.40 E-value=0.53 Score=23.27 Aligned_cols=19 Identities=21% Similarity=0.709 Sum_probs=14.7
Q ss_pred CeEecCCCCcccHHHHHHH
Q 035392 18 PLIWGACNHAFHLHCILKW 36 (59)
Q Consensus 18 ~~~~~~C~H~fh~~Ci~~w 36 (59)
.+.-..|++.||..|-..|
T Consensus 43 ~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CEECTTTCCEECSSSCSBC
T ss_pred ceEeCCCCCccccccCCch
Confidence 3444469999999998887
No 180
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=58.60 E-value=3 Score=18.96 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=23.1
Q ss_pred CcccccCcCCC--CCCeEecCCCCccc--HHHHHHHHHhCCCCCCCcccccccc
Q 035392 5 GCCPDCKLPGD--DCPLIWGACNHAFH--LHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 5 ~~C~IC~~~~~--~~~~~~~~C~H~fh--~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
..|+-|..+.. +..+. .=+..|| .+| ..|-.|++++.
T Consensus 3 ~~C~~C~~~I~~~~~~v~--a~~~~wH~~~~C-----------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT--YNNFSWHASTEC-----------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEE--ETTEEEETTTTT-----------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEE--ECCCccCCCCCC-----------EECCCCCCcCC
Confidence 46888865544 22232 4477888 877 46777777664
No 181
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=57.61 E-value=3.1 Score=19.70 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCcccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
...|+.|.........+ ..-+..||.+| ..|-.|++++.
T Consensus 7 ~~~C~~C~~~I~~~~~~-~a~~~~~H~~C-----------F~C~~C~~~L~ 45 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV-QCDGRSFHRCC-----------FLCMVCRKNLD 45 (81)
T ss_dssp -CBCSSSCCBCSSTTEE-EETTEEEESSS-----------EECSSSCCEEC
T ss_pred CCcCcCcCccccCceeE-EeCCccccccc-----------CccCCCCCCCC
Confidence 35688887655322232 24577888777 35777776654
No 182
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.44 E-value=7.9 Score=20.35 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=20.2
Q ss_pred CcccccCcCCC--CCCeEecCCCCcccHHHHHH
Q 035392 5 GCCPDCKLPGD--DCPLIWGACNHAFHLHCILK 35 (59)
Q Consensus 5 ~~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~ 35 (59)
..|.+|...+. ...-.--.||.+||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 36889975433 11223358999999999654
No 183
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=54.94 E-value=6 Score=21.67 Aligned_cols=9 Identities=0% Similarity=0.028 Sum_probs=3.9
Q ss_pred CCcccHHHH
Q 035392 25 NHAFHLHCI 33 (59)
Q Consensus 25 ~H~fh~~Ci 33 (59)
|..||..|.
T Consensus 106 g~~yC~~~y 114 (182)
T 2jtn_A 106 ESVYCKDDF 114 (182)
T ss_dssp TEEECHHHH
T ss_pred CEeeecCcc
Confidence 334444443
No 184
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=54.24 E-value=7.8 Score=19.74 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=21.0
Q ss_pred cccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 6 CCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
.|..|..+....... ..=|..||..|..+-+ . ..|..|.+++.
T Consensus 32 ~C~~C~~~L~~~~f~-~~~g~~yC~~cy~~~~--~---~~C~~C~~~I~ 74 (126)
T 2xqn_T 32 CCFDCDSILAGEIYV-MVNDKPVCKPCYVKNH--A---VVCQGCHNAID 74 (126)
T ss_dssp BCTTTCCBCTTSEEE-EETTEEEEHHHHHHHS--C---CBCTTTCSBCC
T ss_pred CcCCCCCCCCcCEEE-eECCEEechHHhCcCc--C---ccCcccCCcCC
Confidence 355554443332221 2335566666654421 1 45777766665
No 185
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=54.21 E-value=12 Score=19.12 Aligned_cols=10 Identities=0% Similarity=-0.462 Sum_probs=4.8
Q ss_pred CCcccccccc
Q 035392 45 HCPMCRREWQ 54 (59)
Q Consensus 45 ~CP~Cr~~~~ 54 (59)
.|-.|..++.
T Consensus 71 ~C~~C~~~I~ 80 (122)
T 1m3v_A 71 AGGSGGHMGS 80 (122)
T ss_dssp SSSCSSCCSC
T ss_pred ccccCCCCcC
Confidence 4555554443
No 186
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=53.30 E-value=5.5 Score=20.45 Aligned_cols=27 Identities=11% Similarity=0.327 Sum_probs=13.5
Q ss_pred CCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 25 NHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 25 ~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
+..||..|..+-+... ..|..|.+++.
T Consensus 51 g~~yC~~~y~~~~~~~---~~C~~C~~~I~ 77 (131)
T 2xjy_A 51 GRKLCRRDYLRLFGQD---GLCASCDKRIR 77 (131)
T ss_dssp TEEECHHHHHHHHCCC---EECTTTCCEEC
T ss_pred CEEeecCchhhhCCCc---cChhhcCCccC
Confidence 4556666655533221 14666655553
No 187
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.90 E-value=0.21 Score=25.06 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=7.2
Q ss_pred CCcccccCcC
Q 035392 4 DGCCPDCKLP 13 (59)
Q Consensus 4 ~~~C~IC~~~ 13 (59)
+..||.|..+
T Consensus 2 ~~~CP~C~~~ 11 (81)
T 2jrp_A 2 EITCPVCHHA 11 (81)
T ss_dssp CCCCSSSCSC
T ss_pred CCCCCCCCCc
Confidence 4689999643
No 188
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=52.60 E-value=4.4 Score=18.55 Aligned_cols=13 Identities=23% Similarity=0.698 Sum_probs=10.0
Q ss_pred CCCcccccccccc
Q 035392 44 AHCPMCRREWQFK 56 (59)
Q Consensus 44 ~~CP~Cr~~~~~~ 56 (59)
-.||.|+.++.+.
T Consensus 11 L~CP~c~~~L~~~ 23 (56)
T 2kpi_A 11 LACPACHAPLEER 23 (56)
T ss_dssp CCCSSSCSCEEEE
T ss_pred eeCCCCCCcceec
Confidence 5799999887654
No 189
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.76 E-value=7.5 Score=22.09 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=20.5
Q ss_pred CCcccccCcCCC--CCCeEecCCCCcccHHHHHH
Q 035392 4 DGCCPDCKLPGD--DCPLIWGACNHAFHLHCILK 35 (59)
Q Consensus 4 ~~~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~ 35 (59)
+..|.+|...+. ...-..-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 457999975433 11223358999999988654
No 190
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=51.69 E-value=6 Score=21.81 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=5.1
Q ss_pred CCCcccHHH
Q 035392 24 CNHAFHLHC 32 (59)
Q Consensus 24 C~H~fh~~C 32 (59)
=+..||..|
T Consensus 89 ~~~~~H~~C 97 (188)
T 1rut_X 89 QGNVYHLKC 97 (188)
T ss_dssp TTEEECGGG
T ss_pred CCCEEeCCC
Confidence 355666655
No 191
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=50.97 E-value=12 Score=18.51 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=20.8
Q ss_pred CcccccCcCCC--CCCeEecCCCCcccHHHHHHH
Q 035392 5 GCCPDCKLPGD--DCPLIWGACNHAFHLHCILKW 36 (59)
Q Consensus 5 ~~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~w 36 (59)
..|.+|...+. ...-.-..||.+||..|....
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 35888964433 112334589999999997654
No 192
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=50.92 E-value=14 Score=18.60 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=17.6
Q ss_pred CCcccccCcCCCCCCeEecC--CCCcccH
Q 035392 4 DGCCPDCKLPGDDCPLIWGA--CNHAFHL 30 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~--C~H~fh~ 30 (59)
...|..|... .+...+-+. |||++|.
T Consensus 25 ~~~C~~C~~~-~~~lw~CL~~~Cg~vgCg 52 (97)
T 2uzg_A 25 LGTCQDCKVQ-GPNLWACLENRCSYVGCG 52 (97)
T ss_dssp TTCCSSSCCC-CSSCEEECCTTCCCEECC
T ss_pred CCcCcCcCCC-CCCceeeecccCCCcccC
Confidence 4579999533 333456677 9999884
No 193
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=49.51 E-value=15 Score=18.95 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=16.6
Q ss_pred CCcccccCcCCCCCCeEecCCCCccc
Q 035392 4 DGCCPDCKLPGDDCPLIWGACNHAFH 29 (59)
Q Consensus 4 ~~~C~IC~~~~~~~~~~~~~C~H~fh 29 (59)
+..|..|... +..-+-+.|||++|
T Consensus 24 ~~~C~~C~~~--~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI--QENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCC--SSEEEETTTCCEEE
T ss_pred CCcCccccCC--CCeeeeeecCcccc
Confidence 4568888533 23456789999987
No 194
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.62 E-value=18 Score=17.05 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=25.1
Q ss_pred ccCcCCCCCCeEecCCC---CcccHHHHHHHHHhC-CCCCCCccccccc
Q 035392 9 DCKLPGDDCPLIWGACN---HAFHLHCILKWVNSQ-TPQAHCPMCRREW 53 (59)
Q Consensus 9 IC~~~~~~~~~~~~~C~---H~fh~~Ci~~w~~~~-~~~~~CP~Cr~~~ 53 (59)
||.....+..|.-..|. ..||..|+.- ... .+.-.||.|+...
T Consensus 10 ~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 10 ICNQVSYGEMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp TTSCCCCSSEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHHHH
T ss_pred EcCCCCCCCEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCccc
Confidence 57654444334334542 6899999973 221 1235799997654
No 195
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.50 E-value=5 Score=20.30 Aligned_cols=12 Identities=42% Similarity=0.983 Sum_probs=9.3
Q ss_pred CCCccccccccc
Q 035392 44 AHCPMCRREWQF 55 (59)
Q Consensus 44 ~~CP~Cr~~~~~ 55 (59)
..||+|.+++..
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 579999987653
No 196
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.73 E-value=14 Score=18.64 Aligned_cols=37 Identities=22% Similarity=0.533 Sum_probs=18.6
Q ss_pred cccccCcCCCCCCeEecCCCCcccHHHHHHHHHhCCCCCCCcccccccc
Q 035392 6 CCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
.|+-|..+..+..++ ..=+..||.+| ..|-.|+.++.
T Consensus 5 ~C~~C~~~I~~~~~~-~a~~~~wH~~C-----------F~C~~C~~~L~ 41 (114)
T 1j2o_A 5 TCGGCQQNIGDRYFL-KAIDQYWHEDC-----------LSCDLCGCRLG 41 (114)
T ss_dssp CBSSSCSCBCSSEEE-ECSSSEECTTT-----------CCCSSSCSCCC
T ss_pred CCcCCCCeeCCcEEE-EECchhHHHhc-----------CcccccCCchh
Confidence 466665444332122 23456666655 35666665553
No 197
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=46.89 E-value=14 Score=17.85 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=20.4
Q ss_pred CcccccCcCCCC--CCeEecCCCCcccHHHHHHH
Q 035392 5 GCCPDCKLPGDD--CPLIWGACNHAFHLHCILKW 36 (59)
Q Consensus 5 ~~C~IC~~~~~~--~~~~~~~C~H~fh~~Ci~~w 36 (59)
..|.+|...+.- ..-.--.||.+||..|....
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 468888644331 12233589999999996553
No 198
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.00 E-value=4.7 Score=19.03 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=29.2
Q ss_pred cccccCcCCC-C-CCeEecCCCCcccHHHHHHHHHh-CCCCCCCccccccc
Q 035392 6 CCPDCKLPGD-D-CPLIWGACNHAFHLHCILKWVNS-QTPQAHCPMCRREW 53 (59)
Q Consensus 6 ~C~IC~~~~~-~-~~~~~~~C~H~fh~~Ci~~w~~~-~~~~~~CP~Cr~~~ 53 (59)
.| ||..+.+ . ..|.-..|.-.||..|+.--... ......||.|+..-
T Consensus 18 ~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred Ee-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 47 6865432 2 35556688899999998643211 11236899997653
No 199
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.55 E-value=14 Score=17.92 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=19.6
Q ss_pred CcccccCcCCCC--CCeEecCCCCcccHHHHHH
Q 035392 5 GCCPDCKLPGDD--CPLIWGACNHAFHLHCILK 35 (59)
Q Consensus 5 ~~C~IC~~~~~~--~~~~~~~C~H~fh~~Ci~~ 35 (59)
..|.+|...+.- ..----.||.+||..|...
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 368888654321 1122348999999999654
No 200
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=43.63 E-value=13 Score=17.93 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=19.5
Q ss_pred cccccCcCCC--CCCeEecCCCCcccHHHHHH
Q 035392 6 CCPDCKLPGD--DCPLIWGACNHAFHLHCILK 35 (59)
Q Consensus 6 ~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~ 35 (59)
.|.+|...+. ...-.--.||.+||..|...
T Consensus 21 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 21 HCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 5888864433 11222358999999999754
No 201
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.38 E-value=12 Score=21.42 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=21.1
Q ss_pred CCcccccCcCCC--CCCeEecCCCCcccHHHHHHH
Q 035392 4 DGCCPDCKLPGD--DCPLIWGACNHAFHLHCILKW 36 (59)
Q Consensus 4 ~~~C~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~w 36 (59)
+..|.+|...+. ...-....||.+||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 357999964433 112233589999999996543
No 202
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=41.48 E-value=8.2 Score=17.99 Aligned_cols=45 Identities=27% Similarity=0.467 Sum_probs=24.9
Q ss_pred cccccCcCCCCCCeEec---CCCCcccHHHHHHHHHhCC-----CCCCCccccc
Q 035392 6 CCPDCKLPGDDCPLIWG---ACNHAFHLHCILKWVNSQT-----PQAHCPMCRR 51 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~---~C~H~fh~~Ci~~w~~~~~-----~~~~CP~Cr~ 51 (59)
.| ||..+.+....+.- .|.-.||..|+.---.... ....||.||.
T Consensus 12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred Ee-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 36 78654343333322 3888999999742111000 1257999974
No 203
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=41.34 E-value=14 Score=17.75 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=20.7
Q ss_pred cccccCcCCCCCCeEecCC-CCcccHHHHHHHH
Q 035392 6 CCPDCKLPGDDCPLIWGAC-NHAFHLHCILKWV 37 (59)
Q Consensus 6 ~C~IC~~~~~~~~~~~~~C-~H~fh~~Ci~~w~ 37 (59)
-|.||.+. ..+.-+.| +-.||..|..+--
T Consensus 10 WC~ICneD---AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 10 WCCICNED---ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SCTTTCSC---CCEEETTTTSEEECSSHHHHHT
T ss_pred eeEEeCCC---CeEEecCCCCceehHHHHHHHc
Confidence 48899543 34566788 7899999977653
No 204
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=40.66 E-value=17 Score=20.06 Aligned_cols=24 Identities=21% Similarity=0.424 Sum_probs=16.1
Q ss_pred eEecCCCCcccHHHHHHHHHhCCCCCCCcccccc
Q 035392 19 LIWGACNHAFHLHCILKWVNSQTPQAHCPMCRRE 52 (59)
Q Consensus 19 ~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~ 52 (59)
.+...|||++-. .....||+|..+
T Consensus 139 ~~C~~CG~i~~~----------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD----------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES----------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC----------CCCCCCCCCCCC
Confidence 345689998851 123589999865
No 205
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=40.18 E-value=21 Score=16.81 Aligned_cols=45 Identities=29% Similarity=0.529 Sum_probs=27.9
Q ss_pred cccCcCCC--CCCeEecCCCCcccHHHHHHHHHhC--CCCCCCcccccc
Q 035392 8 PDCKLPGD--DCPLIWGACNHAFHLHCILKWVNSQ--TPQAHCPMCRRE 52 (59)
Q Consensus 8 ~IC~~~~~--~~~~~~~~C~H~fh~~Ci~~w~~~~--~~~~~CP~Cr~~ 52 (59)
-||..+.+ ...|.-..|.-.||..|+.--.... .....||.|+..
T Consensus 13 CiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 13 CVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp TTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 37765432 3445556789999999996432211 023679999864
No 206
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=39.28 E-value=21 Score=16.78 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=16.8
Q ss_pred CCcccccCc--CCCCCCeEecCCCCcccHHHHHHH
Q 035392 4 DGCCPDCKL--PGDDCPLIWGACNHAFHLHCILKW 36 (59)
Q Consensus 4 ~~~C~IC~~--~~~~~~~~~~~C~H~fh~~Ci~~w 36 (59)
..+|.||.. +.+...-.-.-|.-.||..|-..|
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEE
T ss_pred cchhhhhccceeccCCCccccccCCeeecccCCEe
Confidence 467999974 223222222344455665554433
No 207
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=39.15 E-value=14 Score=20.14 Aligned_cols=15 Identities=27% Similarity=0.964 Sum_probs=11.0
Q ss_pred CCCccccccccccCC
Q 035392 44 AHCPMCRREWQFKGS 58 (59)
Q Consensus 44 ~~CP~Cr~~~~~~~~ 58 (59)
..||.|..++.++++
T Consensus 28 P~CP~C~seytYeDg 42 (138)
T 2akl_A 28 PPCPQCNSEYTYEDG 42 (138)
T ss_dssp CCCTTTCCCCCEECS
T ss_pred CCCCCCCCcceEecC
Confidence 568888887777654
No 208
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=39.03 E-value=11 Score=18.06 Aligned_cols=12 Identities=25% Similarity=0.899 Sum_probs=9.2
Q ss_pred CCCccccccccc
Q 035392 44 AHCPMCRREWQF 55 (59)
Q Consensus 44 ~~CP~Cr~~~~~ 55 (59)
..||+|.+++..
T Consensus 10 ~~CP~Cgkp~~W 21 (68)
T 1lv3_A 10 VNCPTCGKTVVW 21 (68)
T ss_dssp EECTTTCCEEEC
T ss_pred CcCCCCCCcccc
Confidence 469999988753
No 209
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.99 E-value=6.4 Score=24.18 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred CcccccCcCCCC--CCeEecCCCCcccHHHHHHHHHhC----CCCCCCcccccccc
Q 035392 5 GCCPDCKLPGDD--CPLIWGACNHAFHLHCILKWVNSQ----TPQAHCPMCRREWQ 54 (59)
Q Consensus 5 ~~C~IC~~~~~~--~~~~~~~C~H~fh~~Ci~~w~~~~----~~~~~CP~Cr~~~~ 54 (59)
..|.+|...+.- ..-....||++||..|........ .....|-.|-..+.
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 468888643321 112234899999999987765321 11356888866543
No 210
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=38.03 E-value=16 Score=18.76 Aligned_cols=23 Identities=22% Similarity=0.584 Sum_probs=15.9
Q ss_pred ecCCCCcccHHHHHHHHHhCCCCC-CCcccccc
Q 035392 21 WGACNHAFHLHCILKWVNSQTPQA-HCPMCRRE 52 (59)
Q Consensus 21 ~~~C~H~fh~~Ci~~w~~~~~~~~-~CP~Cr~~ 52 (59)
-..|||.|-.. .... .||.|..+
T Consensus 76 C~~CG~~~e~~---------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 76 CKDCSHVFKPN---------ALDYGVCEKCHSK 99 (119)
T ss_dssp CSSSSCEECSC---------CSTTCCCSSSSSC
T ss_pred cCCCCCEEeCC---------CCCCCcCccccCC
Confidence 45789988751 1235 79999876
No 211
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=35.76 E-value=41 Score=16.46 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=20.5
Q ss_pred CcccccCcCCCCCCeEecCCCCcccHHHHHH
Q 035392 5 GCCPDCKLPGDDCPLIWGACNHAFHLHCILK 35 (59)
Q Consensus 5 ~~C~IC~~~~~~~~~~~~~C~H~fh~~Ci~~ 35 (59)
..|.+|......-...-..|+-.+|..|...
T Consensus 48 ~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCDECDFDLHAKCALN 78 (89)
T ss_dssp CCCTTTSCCCCSCEEECTTTCCCCCHHHHHC
T ss_pred eEeCCCCCcCCCcEEEcCCCCCeEcHHhcCC
Confidence 3688896554433344457888899999753
No 212
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=35.47 E-value=9.5 Score=20.60 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=17.7
Q ss_pred EecCCCCcccHHHHHHHHHhCCCCCCCccccccccc
Q 035392 20 IWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQF 55 (59)
Q Consensus 20 ~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr~~~~~ 55 (59)
....|||.|-.. .. ...||.|..++..
T Consensus 134 ~C~~Cg~~~~~~------~~---~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PP---GGVCPDCGSKVKL 160 (165)
T ss_dssp EESSSCCEESSC------CG---GGBCTTTCCBEEE
T ss_pred ECCCCCCcccCC------CC---CCcCCCCCCccee
Confidence 456899998532 11 1479999987543
No 213
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=33.63 E-value=28 Score=20.43 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=14.2
Q ss_pred HHHHHHHhCCCCCCCcccccccc
Q 035392 32 CILKWVNSQTPQAHCPMCRREWQ 54 (59)
Q Consensus 32 Ci~~w~~~~~~~~~CP~Cr~~~~ 54 (59)
=|..|.++. ..||.|..+..
T Consensus 99 ~l~~w~~~~---~fC~~CG~~~~ 118 (269)
T 1vk6_A 99 QLAEFYRSH---KYCGYCGHEMY 118 (269)
T ss_dssp HHHHHHHTT---SBCTTTCCBEE
T ss_pred HHHhhhhcC---CccccCCCcCc
Confidence 356677775 68888887664
No 214
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=33.45 E-value=43 Score=15.87 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCcccccCcCC-CCCCeEecCCCCcccHHHHHH
Q 035392 4 DGCCPDCKLPG-DDCPLIWGACNHAFHLHCILK 35 (59)
Q Consensus 4 ~~~C~IC~~~~-~~~~~~~~~C~H~fh~~Ci~~ 35 (59)
+..|.+|.... ......-+.|.-+||..|+..
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 45688885322 334455679999999999986
No 215
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=33.06 E-value=14 Score=16.19 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=6.8
Q ss_pred CCcccccc
Q 035392 45 HCPMCRRE 52 (59)
Q Consensus 45 ~CP~Cr~~ 52 (59)
.||+|...
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999875
No 216
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=31.78 E-value=6.4 Score=15.45 Aligned_cols=10 Identities=30% Similarity=1.105 Sum_probs=6.1
Q ss_pred CCcccccccc
Q 035392 45 HCPMCRREWQ 54 (59)
Q Consensus 45 ~CP~Cr~~~~ 54 (59)
.||+|.+.+.
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 5777765443
No 217
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=31.72 E-value=17 Score=18.57 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=10.0
Q ss_pred CCCcccccccccc
Q 035392 44 AHCPMCRREWQFK 56 (59)
Q Consensus 44 ~~CP~Cr~~~~~~ 56 (59)
-.||+|+.++.+.
T Consensus 9 LaCP~cK~pL~l~ 21 (97)
T 2k5r_A 9 LCSPDTRQPLSLL 21 (97)
T ss_dssp CCCCTTSSCCEEC
T ss_pred eECCCCCCccccc
Confidence 5799999877653
No 218
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=30.17 E-value=18 Score=18.15 Aligned_cols=14 Identities=21% Similarity=0.814 Sum_probs=11.3
Q ss_pred CCCccccccccccC
Q 035392 44 AHCPMCRREWQFKG 57 (59)
Q Consensus 44 ~~CP~Cr~~~~~~~ 57 (59)
..||.|...+.++.
T Consensus 49 ~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 49 KICPYCSTLYRYDP 62 (87)
T ss_dssp ECCTTTCCEEECCT
T ss_pred EECCCCCCEeEcCC
Confidence 58999999887654
No 219
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=29.94 E-value=13 Score=19.62 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=22.2
Q ss_pred cCCCCcccHHHHHHHHHhC--CCCCCCcccccc
Q 035392 22 GACNHAFHLHCILKWVNSQ--TPQAHCPMCRRE 52 (59)
Q Consensus 22 ~~C~H~fh~~Ci~~w~~~~--~~~~~CP~Cr~~ 52 (59)
..|.|+++..++..|-..- .....|+.|+..
T Consensus 5 ~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 5 PVCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCCcChhhccccccccccccCCCCCcCcccccc
Confidence 5899999998888876431 112479999863
No 220
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=29.04 E-value=21 Score=19.63 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=10.9
Q ss_pred ccccCcCCCC-CCeEecCCCCcccHHH
Q 035392 7 CPDCKLPGDD-CPLIWGACNHAFHLHC 32 (59)
Q Consensus 7 C~IC~~~~~~-~~~~~~~C~H~fh~~C 32 (59)
|+.|..+..+ ..+. .=+..||.+|
T Consensus 118 C~~C~~~I~~~~~v~--a~~~~~H~~C 142 (192)
T 1b8t_A 118 CPRCGQAVYAAEKVI--GAGKSWHKSC 142 (192)
T ss_dssp CTTTSCEECSSSCEE--ETTEEECTTT
T ss_pred CCCCCCEecCcEEEe--cCCCccchhc
Confidence 6677543321 1221 2345566555
No 221
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=28.88 E-value=21 Score=15.37 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=7.9
Q ss_pred CCCccccc-cccc
Q 035392 44 AHCPMCRR-EWQF 55 (59)
Q Consensus 44 ~~CP~Cr~-~~~~ 55 (59)
..||.|.. ++.+
T Consensus 6 ~~CP~C~~~~l~~ 18 (50)
T 1pft_A 6 KVCPACESAELIY 18 (50)
T ss_dssp CSCTTTSCCCEEE
T ss_pred EeCcCCCCcceEE
Confidence 46888876 5444
No 222
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.76 E-value=25 Score=11.72 Aligned_cols=11 Identities=27% Similarity=1.120 Sum_probs=6.9
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..|+.|.+.+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 35777766554
No 223
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=28.52 E-value=21 Score=11.85 Aligned_cols=10 Identities=30% Similarity=1.072 Sum_probs=6.2
Q ss_pred CCcccccccc
Q 035392 45 HCPMCRREWQ 54 (59)
Q Consensus 45 ~CP~Cr~~~~ 54 (59)
.|+.|.+.+.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 4777766554
No 224
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=28.13 E-value=12 Score=17.93 Aligned_cols=14 Identities=36% Similarity=1.046 Sum_probs=11.3
Q ss_pred CCCccccccccccC
Q 035392 44 AHCPMCRREWQFKG 57 (59)
Q Consensus 44 ~~CP~Cr~~~~~~~ 57 (59)
..||.|...|.++.
T Consensus 41 ~~CpYCg~~f~l~~ 54 (67)
T 2jrr_A 41 VECPYCDCKYVLKG 54 (67)
T ss_dssp EEETTTTEEEEETT
T ss_pred EECCCCCCEEEECC
Confidence 57999998887764
No 225
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=26.94 E-value=13 Score=18.67 Aligned_cols=11 Identities=18% Similarity=0.782 Sum_probs=8.2
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..|++||..|-
T Consensus 46 i~C~VCr~tFm 56 (86)
T 1wvk_A 46 IQCKVCMQTFI 56 (86)
T ss_dssp EEETTTTEEEC
T ss_pred CCChHhHhhHH
Confidence 46999998553
No 226
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.67 E-value=14 Score=12.46 Aligned_cols=10 Identities=20% Similarity=0.767 Sum_probs=5.8
Q ss_pred CCcccccccc
Q 035392 45 HCPMCRREWQ 54 (59)
Q Consensus 45 ~CP~Cr~~~~ 54 (59)
.|+.|.+.+.
T Consensus 4 ~C~~C~k~f~ 13 (26)
T 2lvu_A 4 VCERCGKRFV 13 (26)
Confidence 4666665544
No 227
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.58 E-value=26 Score=11.77 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=7.3
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..|+.|.+.+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 46788876654
No 228
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.56 E-value=30 Score=16.87 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=18.8
Q ss_pred CCcccccCcCC---CCCCeEecCCCCcccHHH
Q 035392 4 DGCCPDCKLPG---DDCPLIWGACNHAFHLHC 32 (59)
Q Consensus 4 ~~~C~IC~~~~---~~~~~~~~~C~H~fh~~C 32 (59)
+..|+.|..++ .....+-..|.|..|.+|
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred ccchhhhCccccccccCCCcCcccChhhcccc
Confidence 35799997532 233444568888888777
No 229
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.45 E-value=17 Score=19.16 Aligned_cols=43 Identities=19% Similarity=0.423 Sum_probs=24.3
Q ss_pred CcccccCcCCCC--CCeEecCCCCcccHHHHHHHHHhCCCCCCCcccc
Q 035392 5 GCCPDCKLPGDD--CPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCR 50 (59)
Q Consensus 5 ~~C~IC~~~~~~--~~~~~~~C~H~fh~~Ci~~w~~~~~~~~~CP~Cr 50 (59)
..|..|...+.- ..-.-..||.+||..|........ ..|-.|.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~v---RVC~~C~ 64 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGP---RLCLLCQ 64 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----C---CEEHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCc---eECHHHH
Confidence 468888644331 122235899999999966544322 4566664
No 230
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.40 E-value=23 Score=15.81 Aligned_cols=8 Identities=38% Similarity=1.248 Sum_probs=6.7
Q ss_pred CCcccccc
Q 035392 45 HCPMCRRE 52 (59)
Q Consensus 45 ~CP~Cr~~ 52 (59)
.||+|...
T Consensus 38 ~CP~Cg~~ 45 (52)
T 1e8j_A 38 ACPVCGAS 45 (52)
T ss_dssp CCSSSCCC
T ss_pred cCCCCCCc
Confidence 79999874
No 231
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=25.56 E-value=24 Score=15.97 Aligned_cols=8 Identities=38% Similarity=0.908 Sum_probs=6.7
Q ss_pred CCcccccc
Q 035392 45 HCPMCRRE 52 (59)
Q Consensus 45 ~CP~Cr~~ 52 (59)
.||+|...
T Consensus 38 ~CP~Cga~ 45 (55)
T 2v3b_B 38 VCPDCGVG 45 (55)
T ss_dssp CCTTTCCC
T ss_pred cCCCCCCC
Confidence 79999874
No 232
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.13 E-value=24 Score=15.78 Aligned_cols=8 Identities=38% Similarity=1.219 Sum_probs=6.7
Q ss_pred CCcccccc
Q 035392 45 HCPMCRRE 52 (59)
Q Consensus 45 ~CP~Cr~~ 52 (59)
.||+|...
T Consensus 37 ~CP~Cg~~ 44 (52)
T 1yk4_A 37 VCPLCGAP 44 (52)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCC
Confidence 79999874
No 233
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.92 E-value=40 Score=15.08 Aligned_cols=14 Identities=21% Similarity=0.821 Sum_probs=10.6
Q ss_pred CCCCcccccccccc
Q 035392 43 QAHCPMCRREWQFK 56 (59)
Q Consensus 43 ~~~CP~Cr~~~~~~ 56 (59)
...||.|...+...
T Consensus 12 ~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 12 RKICPRCNAQFRVT 25 (49)
T ss_dssp CCCCTTTCCCCSSH
T ss_pred ceeCCcccccccch
Confidence 46799999887653
No 234
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=24.52 E-value=15 Score=18.13 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=19.8
Q ss_pred CcccccCcCCCCC--CeEecCCCCcccHHHHHH
Q 035392 5 GCCPDCKLPGDDC--PLIWGACNHAFHLHCILK 35 (59)
Q Consensus 5 ~~C~IC~~~~~~~--~~~~~~C~H~fh~~Ci~~ 35 (59)
..|.+|...+.-. .----.||.+||..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4699997543321 112348999999998654
No 235
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.16 E-value=32 Score=11.49 Aligned_cols=11 Identities=18% Similarity=0.476 Sum_probs=6.9
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..|+.|...+.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 35777766554
No 236
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.95 E-value=27 Score=17.97 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=10.1
Q ss_pred CCCcccccccccc
Q 035392 44 AHCPMCRREWQFK 56 (59)
Q Consensus 44 ~~CP~Cr~~~~~~ 56 (59)
..||.|.+++...
T Consensus 33 ~~CP~Cq~eL~~~ 45 (101)
T 2jne_A 33 LHCPQCQHVLDQD 45 (101)
T ss_dssp CBCSSSCSBEEEE
T ss_pred ccCccCCCcceec
Confidence 5799999887654
No 237
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.78 E-value=1.5 Score=26.69 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=14.5
Q ss_pred CcccHHHHHHHHHhCCCCCCCcccccc
Q 035392 26 HAFHLHCILKWVNSQTPQAHCPMCRRE 52 (59)
Q Consensus 26 H~fh~~Ci~~w~~~~~~~~~CP~Cr~~ 52 (59)
+.+|..|-.+|--.. ..||.|...
T Consensus 208 ~l~Cs~C~t~W~~~R---~~C~~Cg~~ 231 (309)
T 2fiy_A 208 YLSCSLCACEWHYVR---IKCSHCEES 231 (309)
T ss_dssp EEEETTTCCEEECCT---TSCSSSCCC
T ss_pred EEEeCCCCCEEeecC---cCCcCCCCC
Confidence 345555555554332 689999764
No 238
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.23 E-value=33 Score=12.51 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=8.7
Q ss_pred CCCccccccccc
Q 035392 44 AHCPMCRREWQF 55 (59)
Q Consensus 44 ~~CP~Cr~~~~~ 55 (59)
..|+.|.+.+..
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 479999877653
No 239
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.20 E-value=55 Score=15.42 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=10.8
Q ss_pred CCCccccccccccCC
Q 035392 44 AHCPMCRREWQFKGS 58 (59)
Q Consensus 44 ~~CP~Cr~~~~~~~~ 58 (59)
..||.|++-....+.
T Consensus 50 Kycp~c~kHtlhkE~ 64 (66)
T 3bbo_3 50 KFCPYCYKHTIHGEI 64 (66)
T ss_dssp CCCCSSSSCCCCCCC
T ss_pred ccCCCCCCeeeEEee
Confidence 479999987665543
No 240
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.69 E-value=31 Score=11.58 Aligned_cols=10 Identities=30% Similarity=1.085 Sum_probs=6.0
Q ss_pred CCcccccccc
Q 035392 45 HCPMCRREWQ 54 (59)
Q Consensus 45 ~CP~Cr~~~~ 54 (59)
.|+.|...+.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 1rik_A 4 ACPECPKRFM 13 (29)
T ss_dssp ECSSSSCEES
T ss_pred cCCCCCchhC
Confidence 4777766544
No 241
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=22.11 E-value=27 Score=17.54 Aligned_cols=11 Identities=36% Similarity=1.066 Sum_probs=8.6
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..||+|.+++.
T Consensus 9 ~~~PlCG~~L~ 19 (95)
T 2k5c_A 9 AKCPICGSPLK 19 (95)
T ss_dssp EECSSSCCEEC
T ss_pred ccCCcCCCccC
Confidence 46999988765
No 242
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.93 E-value=38 Score=11.43 Aligned_cols=11 Identities=27% Similarity=0.902 Sum_probs=6.7
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..|+.|...+.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 35777766554
No 243
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.31 E-value=19 Score=12.31 Aligned_cols=10 Identities=30% Similarity=1.066 Sum_probs=5.6
Q ss_pred CCcccccccc
Q 035392 45 HCPMCRREWQ 54 (59)
Q Consensus 45 ~CP~Cr~~~~ 54 (59)
.|+.|.+.+.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2lvt_A 4 QCVMCGKAFT 13 (29)
Confidence 4666665543
No 244
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.55 E-value=30 Score=11.59 Aligned_cols=11 Identities=18% Similarity=0.863 Sum_probs=7.0
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..|+.|.+.+.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 35777776554
No 245
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.35 E-value=31 Score=11.53 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=7.0
Q ss_pred CCCcccccccc
Q 035392 44 AHCPMCRREWQ 54 (59)
Q Consensus 44 ~~CP~Cr~~~~ 54 (59)
..|+.|.+.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 35777776654
No 246
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.61 E-value=35 Score=12.28 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=8.2
Q ss_pred CCCccccccccc
Q 035392 44 AHCPMCRREWQF 55 (59)
Q Consensus 44 ~~CP~Cr~~~~~ 55 (59)
..|+.|.+.+..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elr_A 10 HLCDMCGKKFKS 21 (36)
T ss_dssp CBCTTTCCBCSS
T ss_pred eecCcCCCCcCc
Confidence 468888776653
Done!