Query 035393
Match_columns 57
No_of_seqs 17 out of 19
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 02:41:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09796 QCR10: Ubiquinol-cyto 94.8 0.02 4.2E-07 34.5 1.7 32 22-53 14-45 (64)
2 PF08997 UCR_6-4kD: Ubiquinol- 90.1 0.13 2.8E-06 30.6 0.7 22 20-41 16-37 (56)
3 TIGR03063 srtB_target sortase 81.5 0.67 1.5E-05 24.5 0.6 24 17-40 2-25 (29)
4 PF01552 Pico_P2B: Picornaviru 71.9 3.6 7.8E-05 26.6 2.1 12 40-51 76-87 (99)
5 COG4083 Predicted membrane pro 54.5 7.1 0.00015 29.0 1.2 33 17-49 8-40 (239)
6 PF00153 Mito_carr: Mitochondr 48.4 7.3 0.00016 21.7 0.4 23 29-51 11-33 (95)
7 KOG0759 Mitochondrial oxogluta 30.0 23 0.00051 26.8 0.7 26 28-53 9-34 (286)
8 TIGR03656 IsdC heme uptake pro 29.0 20 0.00044 25.9 0.2 26 15-40 185-210 (217)
9 PTZ00169 ADP/ATP transporter o 27.2 41 0.00089 23.0 1.4 24 27-50 12-35 (300)
10 PF08102 Antimicrobial_7: Scor 25.6 42 0.0009 19.3 1.0 8 43-50 4-11 (43)
11 COG4044 Uncharacterized protei 25.2 33 0.00071 25.7 0.7 14 41-54 109-122 (247)
12 PF06803 DUF1232: Protein of u 23.0 23 0.0005 19.1 -0.3 17 32-48 7-23 (40)
13 COG1962 MtrH Tetrahydromethano 23.0 54 0.0012 25.3 1.5 36 21-56 215-250 (313)
14 KOG0766 Predicted mitochondria 22.5 45 0.00097 25.5 1.0 24 29-52 220-243 (297)
15 PF14965 BRI3BP: Negative regu 22.4 76 0.0016 22.6 2.1 19 17-35 68-86 (177)
16 COG3182 PiuB Uncharacterized i 21.4 74 0.0016 24.7 2.0 23 22-44 144-166 (442)
17 PTZ00168 mitochondrial carrier 21.0 68 0.0015 21.7 1.6 26 24-49 181-206 (259)
18 KOG0753 Mitochondrial fatty ac 21.0 27 0.00058 26.9 -0.4 33 18-50 120-152 (317)
19 PF14464 Prok-JAB: Prokaryotic 20.4 45 0.00098 19.0 0.5 14 16-29 74-87 (104)
20 smart00535 RIBOc Ribonuclease 20.1 59 0.0013 19.2 1.0 25 29-53 97-125 (129)
No 1
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=94.80 E-value=0.02 Score=34.48 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhhhhheeeeechhHHHHHhhcc
Q 035393 22 VQAAAFWGVAAVSGALYLIQPFDWLKKTFLEK 53 (57)
Q Consensus 22 i~aaA~WGvaa~~~alwLVQPfDwikktf~ek 53 (57)
...+|+||++++++++..+--+-=++++++.|
T Consensus 14 ~p~~a~wG~aa~~~v~~f~~~vPr~q~dil~K 45 (64)
T PF09796_consen 14 GPNLALWGGAAGAAVLFFTSGVPRFQRDILQK 45 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHh
Confidence 45789999999999999999998888888877
No 2
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=90.06 E-value=0.13 Score=30.62 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.4
Q ss_pred hhHHHHHHhhhhhhhhheeeee
Q 035393 20 VDVQAAAFWGVAAVSGALYLIQ 41 (57)
Q Consensus 20 tDi~aaA~WGvaa~~~alwLVQ 41 (57)
.=+.+++.||.+++++.+|+++
T Consensus 16 ~w~ps~~~~G~~~~l~lvy~TD 37 (56)
T PF08997_consen 16 NWIPSAAAWGAAGGLALVYFTD 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhchhHHHHhhhhhhheeeecc
Confidence 3467899999999999999997
No 3
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=81.48 E-value=0.67 Score=24.46 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.4
Q ss_pred CChhhHHHHHHhhhhhhhhheeee
Q 035393 17 LQPVDVQAAAFWGVAAVSGALYLI 40 (57)
Q Consensus 17 pQ~tDi~aaA~WGvaa~~~alwLV 40 (57)
||+.|-..+++|++..+..+++|+
T Consensus 2 PkT~D~a~i~ly~~l~~~s~~~Li 25 (29)
T TIGR03063 2 PKTGDSAQIGLYAVLFLGSGLFLI 25 (29)
T ss_pred CCCccchhHHHHHHHHHHHHHHHh
Confidence 899999999999999988888875
No 4
>PF01552 Pico_P2B: Picornavirus 2B protein; InterPro: IPR002527 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0000166 nucleotide binding, 0003968 RNA-directed RNA polymerase activity, 0005198 structural molecule activity, 0008233 peptidase activity, 0008234 cysteine-type peptidase activity, 0016740 transferase activity, 0016779 nucleotidyltransferase activity, 0016787 hydrolase activity, 0018144 RNA-protein covalent cross-linking, 0019012 virion
Probab=71.93 E-value=3.6 Score=26.61 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=10.7
Q ss_pred eechhHHHHHhh
Q 035393 40 IQPFDWLKKTFL 51 (57)
Q Consensus 40 VQPfDwikktf~ 51 (57)
.-||+|||+++-
T Consensus 76 ~sPw~~LK~Kvc 87 (99)
T PF01552_consen 76 GSPWRWLKSKVC 87 (99)
T ss_pred CCHHHHHHHHHH
Confidence 899999999874
No 5
>COG4083 Predicted membrane protein [Function unknown]
Probab=54.54 E-value=7.1 Score=29.04 Aligned_cols=33 Identities=21% Similarity=0.000 Sum_probs=27.3
Q ss_pred CChhhHHHHHHhhhhhhhhheeeeechhHHHHH
Q 035393 17 LQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKT 49 (57)
Q Consensus 17 pQ~tDi~aaA~WGvaa~~~alwLVQPfDwikkt 49 (57)
|-..|+..-|+-|+-++-++.|..||+|+|..|
T Consensus 8 p~li~v~~~ag~~gWavFs~~wg~~i~hyl~vq 40 (239)
T COG4083 8 PALIDVARYAGVGGWAVFSLFWGLLIEHYLFVQ 40 (239)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhhHHHHHHH
Confidence 456778787877777888899999999999865
No 6
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=48.38 E-value=7.3 Score=21.66 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=16.5
Q ss_pred hhhhhhhheeeeechhHHHHHhh
Q 035393 29 GVAAVSGALYLIQPFDWLKKTFL 51 (57)
Q Consensus 29 Gvaa~~~alwLVQPfDwikktf~ 51 (57)
|.++++.+--++.|+|-||-..-
T Consensus 11 g~~ag~~~~~~~~Pld~ik~~~q 33 (95)
T PF00153_consen 11 GALAGAISTLVTYPLDTIKTRMQ 33 (95)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHhHhhc
Confidence 44555556667899999987765
No 7
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion]
Probab=29.97 E-value=23 Score=26.78 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=21.6
Q ss_pred hhhhhhhhheeeeechhHHHHHhhcc
Q 035393 28 WGVAAVSGALYLIQPFDWLKKTFLEK 53 (57)
Q Consensus 28 WGvaa~~~alwLVQPfDwikktf~ek 53 (57)
-|+.++++|--++||-|-||.+.-.-
T Consensus 9 ~GGla~~~A~~~thPlDLvKvrmQ~~ 34 (286)
T KOG0759|consen 9 FGGLAGMGATCVTHPLDLVKVRMQLQ 34 (286)
T ss_pred eccHHHHHHHHHcCcHHHHHHHHHHc
Confidence 37888899999999999999876443
No 8
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=28.97 E-value=20 Score=25.89 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.7
Q ss_pred cCCChhhHHHHHHhhhhhhhhheeee
Q 035393 15 SRLQPVDVQAAAFWGVAAVSGALYLI 40 (57)
Q Consensus 15 ~rpQ~tDi~aaA~WGvaa~~~alwLV 40 (57)
--||..|=+.+.+|++..+..+.+|+
T Consensus 185 ~np~t~d~~~~~l~~~~~~~~~~~l~ 210 (217)
T TIGR03656 185 DNPQTGDGTPIYLYAIALLIAGALLI 210 (217)
T ss_pred CCCCcCccchhHHHHHHHHHHHHHHH
Confidence 35999999999999999998888776
No 9
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional
Probab=27.18 E-value=41 Score=23.00 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=18.7
Q ss_pred HhhhhhhhhheeeeechhHHHHHh
Q 035393 27 FWGVAAVSGALYLIQPFDWLKKTF 50 (57)
Q Consensus 27 ~WGvaa~~~alwLVQPfDwikktf 50 (57)
+-|..+++.+--++.|+|-||-..
T Consensus 12 ~aG~~ag~~~~~~~~Pld~vKtrl 35 (300)
T PTZ00169 12 LMGGISAAISKTAVAPIERVKMLI 35 (300)
T ss_pred HHHHHHHHHHHHhcCcHhHheeee
Confidence 457777777778889999998654
No 10
>PF08102 Antimicrobial_7: Scorpion antimicrobial peptide ; InterPro: IPR012526 This family consists of antimicrobial peptides secreted by scorpions. Novel antimicrobial peptides have been isolated from scorpions, namely the opistoporin [] and the pandinin []. These peptides form essentially helical structures and demonstrate high antimicrobial activity against Gram-negative and Gram-positive bacteria respectively.; GO: 0005576 extracellular region
Probab=25.56 E-value=42 Score=19.30 Aligned_cols=8 Identities=50% Similarity=1.199 Sum_probs=6.5
Q ss_pred hhHHHHHh
Q 035393 43 FDWLKKTF 50 (57)
Q Consensus 43 fDwikktf 50 (57)
|||||.+.
T Consensus 4 wd~IK~~A 11 (43)
T PF08102_consen 4 WDWIKSTA 11 (43)
T ss_pred HHHHHHHH
Confidence 89998764
No 11
>COG4044 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.19 E-value=33 Score=25.69 Aligned_cols=14 Identities=50% Similarity=0.553 Sum_probs=12.7
Q ss_pred echhHHHHHhhccC
Q 035393 41 QPFDWLKKTFLEKS 54 (57)
Q Consensus 41 QPfDwikktf~ek~ 54 (57)
-|--|||.||.|||
T Consensus 109 vply~Lk~~~gekp 122 (247)
T COG4044 109 VPLYELKRTFGEKP 122 (247)
T ss_pred ccHHHHHhccCCCc
Confidence 48889999999999
No 12
>PF06803 DUF1232: Protein of unknown function (DUF1232); InterPro: IPR010652 This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function.
Probab=23.02 E-value=23 Score=19.09 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=13.6
Q ss_pred hhhhheeeeechhHHHH
Q 035393 32 AVSGALYLIQPFDWLKK 48 (57)
Q Consensus 32 a~~~alwLVQPfDwikk 48 (57)
.+.+.+|++-|+|-|-+
T Consensus 7 ~~~al~Y~isP~D~iPD 23 (40)
T PF06803_consen 7 ILAALAYFISPIDLIPD 23 (40)
T ss_pred HHHHHHHHhchhhhCCC
Confidence 45678899999998765
No 13
>COG1962 MtrH Tetrahydromethanopterin S-methyltransferase, subunit H [Coenzyme metabolism]
Probab=22.98 E-value=54 Score=25.28 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=29.2
Q ss_pred hHHHHHHhhhhhhhhheeeeechhHHHHHhhccCCC
Q 035393 21 DVQAAAFWGVAAVSGALYLIQPFDWLKKTFLEKSEE 56 (57)
Q Consensus 21 Di~aaA~WGvaa~~~alwLVQPfDwikktf~ek~e~ 56 (57)
.++.=+-||.-.++|+==..--||||++.+-.-||+
T Consensus 215 ~~~vK~k~G~PvGsg~HN~psaWdwlr~~~kk~~e~ 250 (313)
T COG1962 215 TIAVKAKLGLPVGSGIHNAPSAWDWLREFKKKLPEA 250 (313)
T ss_pred hhhhHHhcCCccCcccccCchHHHHHHHHHhhCccc
Confidence 344557899999999999999999999977655664
No 14
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion]
Probab=22.47 E-value=45 Score=25.51 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=18.3
Q ss_pred hhhhhhhheeeeechhHHHHHhhc
Q 035393 29 GVAAVSGALYLIQPFDWLKKTFLE 52 (57)
Q Consensus 29 Gvaa~~~alwLVQPfDwikktf~e 52 (57)
|+.++..|--.+||||=||-..-.
T Consensus 220 gi~sg~lAt~vT~Pfd~iKTrmQL 243 (297)
T KOG0766|consen 220 GIFSGILATLVTQPFDVIKTRMQL 243 (297)
T ss_pred HHHHHHHHHHhcCchhhhhhhhcc
Confidence 566777777889999999875433
No 15
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=22.37 E-value=76 Score=22.59 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=16.1
Q ss_pred CChhhHHHHHHhhhhhhhh
Q 035393 17 LQPVDVQAAAFWGVAAVSG 35 (57)
Q Consensus 17 pQ~tDi~aaA~WGvaa~~~ 35 (57)
-+|..|+++..||.++..|
T Consensus 68 ~SP~~V~~~llw~~~aL~~ 86 (177)
T PF14965_consen 68 FSPGGVQTVLLWGAVALLA 86 (177)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 4678999999999988765
No 16
>COG3182 PiuB Uncharacterized iron-regulated membrane protein [Function unknown]
Probab=21.39 E-value=74 Score=24.74 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred HHHHHHhhhhhhhhheeeeechh
Q 035393 22 VQAAAFWGVAAVSGALYLIQPFD 44 (57)
Q Consensus 22 i~aaA~WGvaa~~~alwLVQPfD 44 (57)
|+.+|.|.+++.++++||.=|+.
T Consensus 144 ve~aa~~~i~~lVsG~~L~~pr~ 166 (442)
T COG3182 144 VELAALLLIVLLVSGLYLWWPRR 166 (442)
T ss_pred HHHHHHHHHHHHHhhheeeeecc
Confidence 67899999999999999988863
No 17
>PTZ00168 mitochondrial carrier protein; Provisional
Probab=21.05 E-value=68 Score=21.73 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=21.2
Q ss_pred HHHHhhhhhhhhheeeeechhHHHHH
Q 035393 24 AAAFWGVAAVSGALYLIQPFDWLKKT 49 (57)
Q Consensus 24 aaA~WGvaa~~~alwLVQPfDwikkt 49 (57)
...+-|..+++.+-.+++|+|=+|..
T Consensus 181 ~~~~aG~~ag~~a~~~t~P~DvvKtr 206 (259)
T PTZ00168 181 TSAICGGLAGGIAGFLTTPVDVIKSR 206 (259)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 34567888888888999999999875
No 18
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion]
Probab=21.03 E-value=27 Score=26.90 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=27.1
Q ss_pred ChhhHHHHHHhhhhhhhhheeeeechhHHHHHh
Q 035393 18 QPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTF 50 (57)
Q Consensus 18 Q~tDi~aaA~WGvaa~~~alwLVQPfDwikktf 50 (57)
..--+-...+=|+++++.|.++-||.|-+|.++
T Consensus 120 ~~~~l~~~~l~G~taGaia~~~AnPtDlVKVrm 152 (317)
T KOG0753|consen 120 ESLPLWKSILCGVTAGAIAQALANPTDLVKVRM 152 (317)
T ss_pred ccccHHHHHHHHHhhhHHHHHhcCccceEEEEe
Confidence 334466677789999999999999999999765
No 19
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A.
Probab=20.38 E-value=45 Score=19.04 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=9.8
Q ss_pred CCChhhHHHHHHhh
Q 035393 16 RLQPVDVQAAAFWG 29 (57)
Q Consensus 16 rpQ~tDi~aaA~WG 29 (57)
+|+.+|++.+.-++
T Consensus 74 ~pS~~D~~~~~~~~ 87 (104)
T PF14464_consen 74 FPSSTDIRSMRDLA 87 (104)
T ss_dssp S--HHHHHTHCCS-
T ss_pred CCCHHHHHhhhccC
Confidence 79999999988875
No 20
>smart00535 RIBOc Ribonuclease III family.
Probab=20.12 E-value=59 Score=19.20 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=18.5
Q ss_pred hhhhhhhheeeeec----hhHHHHHhhcc
Q 035393 29 GVAAVSGALYLIQP----FDWLKKTFLEK 53 (57)
Q Consensus 29 Gvaa~~~alwLVQP----fDwikktf~ek 53 (57)
.+=|.+||+|+-.- .+||++-+.++
T Consensus 97 ~~eAliGAi~ld~g~~~~~~~i~~~~~~~ 125 (129)
T smart00535 97 VFEALIGAIYLDSGLEAAREFIRDLLGPR 125 (129)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 56788999999987 55666666544
Done!