Query 035393
Match_columns 57
No_of_seqs 17 out of 19
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 03:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyu_K Ubiquinol-cytochrome C 93.7 0.016 5.4E-07 33.3 0.5 21 22-42 18-38 (56)
2 1wih_A Mitochondrial ribosome 45.1 5 0.00017 24.0 0.2 9 37-45 35-43 (84)
3 2lck_A Mitochondrial uncouplin 23.4 28 0.00094 22.6 1.0 26 26-51 108-133 (303)
4 1okc_A ADP, ATP carrier protei 20.0 59 0.002 20.8 2.0 23 29-51 14-36 (297)
5 1ifp_A PF3 inovirus, major coa 19.6 51 0.0018 18.0 1.5 10 42-51 35-44 (44)
6 1oi0_A AF2198, hypothetical pr 18.6 68 0.0023 18.6 2.0 21 15-41 77-97 (124)
7 3h7t_A Group 3 allergen smipp- 18.3 60 0.0021 19.4 1.7 15 43-57 221-235 (235)
8 4dbg_B Ring finger protein 31; 17.3 73 0.0025 21.4 2.1 26 17-50 29-54 (162)
9 1uhr_A SWI/SNF related, matrix 16.0 88 0.003 18.2 2.0 44 4-56 1-50 (93)
10 2xbu_A Hypoxanthine-guanine ph 15.1 48 0.0016 21.5 0.7 10 35-44 185-194 (221)
No 1
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=93.70 E-value=0.016 Score=33.34 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.1
Q ss_pred HHHHHHhhhhhhhhheeeeec
Q 035393 22 VQAAAFWGVAAVSGALYLIQP 42 (57)
Q Consensus 22 i~aaA~WGvaa~~~alwLVQP 42 (57)
+-+++.||.+++++++|++++
T Consensus 18 ~psa~~~Gaaa~v~~ly~tdw 38 (56)
T 2fyu_K 18 VPTASLWGAVGAVGLVWATDW 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhhhhhhhhheeeeccH
Confidence 568999999999999999994
No 2
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=45.07 E-value=5 Score=24.03 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=7.4
Q ss_pred eeeeechhH
Q 035393 37 LYLIQPFDW 45 (57)
Q Consensus 37 lwLVQPfDw 45 (57)
.-+||||||
T Consensus 35 ~l~I~p~D~ 43 (84)
T 1wih_A 35 VILVNMASF 43 (84)
T ss_dssp EEEEECTTC
T ss_pred EEEEEeccc
Confidence 568999996
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=23.42 E-value=28 Score=22.55 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=19.0
Q ss_pred HHhhhhhhhhheeeeechhHHHHHhh
Q 035393 26 AFWGVAAVSGALYLIQPFDWLKKTFL 51 (57)
Q Consensus 26 A~WGvaa~~~alwLVQPfDwikktf~ 51 (57)
.+=|.++++.+--++.|+|-||-..-
T Consensus 108 ~~ag~~ag~~~~~~~~Pld~vktrlq 133 (303)
T 2lck_A 108 LLAGSTTGALAVAVAQPTDVVKVRFQ 133 (303)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHh
Confidence 34466666666678999999997654
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=19.96 E-value=59 Score=20.76 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=17.2
Q ss_pred hhhhhhhheeeeechhHHHHHhh
Q 035393 29 GVAAVSGALYLIQPFDWLKKTFL 51 (57)
Q Consensus 29 Gvaa~~~alwLVQPfDwikktf~ 51 (57)
|.++++.+--+++|+|-||-..-
T Consensus 14 G~~ag~~~~~~~~Pld~vKtrlQ 36 (297)
T 1okc_A 14 GGVAAAISKTAVAPIERVKLLLQ 36 (297)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHH
Confidence 55666666668999999997653
No 5
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=19.58 E-value=51 Score=18.04 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=8.0
Q ss_pred chhHHHHHhh
Q 035393 42 PFDWLKKTFL 51 (57)
Q Consensus 42 PfDwikktf~ 51 (57)
-..|||.|||
T Consensus 35 girwikaqff 44 (44)
T 1ifp_A 35 GIRWIKAQFF 44 (44)
T ss_dssp HHHHHHHHHC
T ss_pred HhHHhHhhcC
Confidence 3589999986
No 6
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=18.56 E-value=68 Score=18.65 Aligned_cols=21 Identities=19% Similarity=0.119 Sum_probs=14.8
Q ss_pred cCCChhhHHHHHHhhhhhhhhheeeee
Q 035393 15 SRLQPVDVQAAAFWGVAAVSGALYLIQ 41 (57)
Q Consensus 15 ~rpQ~tDi~aaA~WGvaa~~~alwLVQ 41 (57)
-+|+.+|+..+.- .++.|+|-
T Consensus 77 ~~PS~~D~~~~~~------~~~~~lIv 97 (124)
T 1oi0_A 77 CRPSEEDLSLFTR------FGKYHIIV 97 (124)
T ss_dssp CSCCHHHHHHHHH------SCSEEEEE
T ss_pred CccCHHHHHhhhc------CCCEEEEE
Confidence 4799999988653 44566654
No 7
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}
Probab=18.29 E-value=60 Score=19.38 Aligned_cols=15 Identities=13% Similarity=-0.013 Sum_probs=11.1
Q ss_pred hhHHHHHhhccCCCC
Q 035393 43 FDWLKKTFLEKSEEK 57 (57)
Q Consensus 43 fDwikktf~ek~e~~ 57 (57)
.|||+++.-.+-+|+
T Consensus 221 ~~WI~~~i~~~~~p~ 235 (235)
T 3h7t_A 221 VLDIKDIISGKVKPQ 235 (235)
T ss_dssp HHHHHHHHTTCSCCC
T ss_pred HHHHHHHHhCCccCC
Confidence 489998887776653
No 8
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=17.27 E-value=73 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=17.6
Q ss_pred CChhhHHHHHHhhhhhhhhheeeeechhHHHHHh
Q 035393 17 LQPVDVQAAAFWGVAAVSGALYLIQPFDWLKKTF 50 (57)
Q Consensus 17 pQ~tDi~aaA~WGvaa~~~alwLVQPfDwikktf 50 (57)
-.|.+|++|- .+.+. .-|.||||...
T Consensus 29 fspEEV~aAl---~~~g~-----~~P~~WLk~ew 54 (162)
T 4dbg_B 29 ACPEEIFSAL---QYSGT-----EVPLQWLRSEL 54 (162)
T ss_dssp CCHHHHHHHH---HHHTC-----CCCHHHHHHHS
T ss_pred CCHHHHHHHH---HhcCC-----CCcHHHHHHHH
Confidence 4678888776 33332 44999999865
No 9
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=16.00 E-value=88 Score=18.21 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=25.7
Q ss_pred ccccccccCCccCCChhhHHHHHHhhhhhhhhheeeeec------hhHHHHHhhccCCC
Q 035393 4 EASMLKFLKPKSRLQPVDVQAAAFWGVAAVSGALYLIQP------FDWLKKTFLEKSEE 56 (57)
Q Consensus 4 ~~~l~kfl~p~~rpQ~tDi~aaA~WGvaa~~~alwLVQP------fDwikktf~ek~e~ 56 (57)
||++..+-|++.++++. + +.++|.=-+.++ |+|||+.=+.-|++
T Consensus 1 ~~~~~~~~p~~~~lS~~-L--------a~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~ 50 (93)
T 1uhr_A 1 GSSGSSGQPPQFKLDPR-L--------ARLLGIHTQTRPVIIQALWQYIKTHKLQDPHE 50 (93)
T ss_dssp CCCCCSSSCCEEEECTT-H--------HHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSC
T ss_pred CccccccCCCccCcCHH-H--------HHHHCCCccCHHHHHHHHHHHHHhccCCCccc
Confidence 46667777777776664 2 222233233333 78998877666654
No 10
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage, FLIP pepti; HET: 5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A* 2jky_A*
Probab=15.06 E-value=48 Score=21.48 Aligned_cols=10 Identities=10% Similarity=0.384 Sum_probs=8.0
Q ss_pred hheeeeechh
Q 035393 35 GALYLIQPFD 44 (57)
Q Consensus 35 ~alwLVQPfD 44 (57)
.=-|+|+||+
T Consensus 185 ~d~wIvfPWe 194 (221)
T 2xbu_A 185 PDKWYAYPWE 194 (221)
T ss_dssp CSCCEECGGG
T ss_pred CCCEEEcCCC
Confidence 3579999998
Done!