BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035394
(51 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51424|RL391_ARATH 60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A
PE=3 SV=2
Length = 51
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/51 (94%), Positives = 50/51 (98%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
MPSHK+FMIKKKL KKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
>sp|Q5SMI4|RL393_ORYSJ 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica
GN=RPL39C PE=3 SV=1
Length = 51
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/51 (96%), Positives = 50/51 (98%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
>sp|P51425|RL39_MAIZE 60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1
Length = 51
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/51 (96%), Positives = 50/51 (98%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
>sp|P51426|RL392_ORYSJ 60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica
GN=RPL39B PE=3 SV=2
Length = 51
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/51 (96%), Positives = 50/51 (98%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
>sp|Q6KAJ8|RL391_ORYSJ 60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica
GN=RPL39A PE=3 SV=2
Length = 51
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/51 (96%), Positives = 50/51 (98%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
>sp|Q8L8W6|RL392_ARATH 60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B
PE=3 SV=1
Length = 51
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 49/51 (96%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
MPSHK+FMIKKKL KKMRQNRPIP+WIR+RTDN IRYNAKRRHWRRTKLGF
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51
>sp|Q962S4|RL39_SPOFR 60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3
SV=1
Length = 51
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 46/51 (90%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 51
>sp|Q6F482|RL39_PLUXY 60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3
SV=1
Length = 51
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 46/51 (90%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 51
>sp|Q96W55|RL39_CANAX 60S ribosomal protein L39 OS=Candida albicans GN=RPL39 PE=3 SV=1
Length = 51
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 43/51 (84%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
MPS K+F K+KLAK +QNRP+P WIR+RTDN IRYNAKRRHWRRTKLG
Sbjct: 1 MPSQKSFRTKQKLAKAQKQNRPLPQWIRLRTDNKIRYNAKRRHWRRTKLGI 51
>sp|Q98TF5|RL39_CHICK 60S ribosomal protein L39 OS=Gallus gallus GN=RPL39 PE=2 SV=1
Length = 51
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 43/51 (84%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 1 MSSHKTFKIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|P62893|RL39_RAT 60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2
Length = 51
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 43/51 (84%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|P62892|RL39_MOUSE 60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2
Length = 51
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 43/51 (84%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|Q90YS9|RL39_ICTPU 60S ribosomal protein L39 OS=Ictalurus punctatus GN=rpl39 PE=3
SV=1
Length = 51
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 43/51 (84%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 1 MASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|P62891|RL39_HUMAN 60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=2 SV=2
Length = 51
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 43/51 (84%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|Q3T051|RL39_BOVIN 60S ribosomal protein L39 OS=Bos taurus GN=RPL39 PE=3 SV=3
Length = 51
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 43/51 (84%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>sp|Q59GN2|R39L5_HUMAN Putative 60S ribosomal protein L39-like 5 OS=Homo sapiens
GN=RPL39P5 PE=5 SV=2
Length = 51
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 43/51 (84%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHW+RTKLG
Sbjct: 1 MSSHKTFKIKQFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 51
>sp|Q6BHV8|RL39_DEBHA 60S ribosomal protein L39 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RPL39 PE=3 SV=1
Length = 51
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
MPS K+F K+KLAK +QNRP+P WIR+R+ NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSQKSFRTKQKLAKAQKQNRPLPQWIRLRSGNTIRYNAKRRHWRRTKLNI 51
>sp|P05767|RL39_SCHPO 60S ribosomal protein L39 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl39 PE=3 SV=3
Length = 51
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 41/51 (80%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
MPSHK+F K+KLAK RQNRPIP WIR+RT NT+ YN KRRHWRRTKL
Sbjct: 1 MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51
>sp|Q96EH5|RL39L_HUMAN 60S ribosomal protein L39-like OS=Homo sapiens GN=RPL39L PE=1
SV=3
Length = 51
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M SHKTF IK+ LAKK +QNRPIP WI+M+ + IRYN+KRRHWRRTKLG
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>sp|Q6CW22|RL39_KLULA 60S ribosomal protein L39 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=RPL39 PE=3 SV=3
Length = 51
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M + K+F+IK+KLAK QNRP+P W R++T+N IRYNAKRRHWRRTKLG
Sbjct: 1 MAAKKSFIIKQKLAKAKNQNRPLPQWYRLKTNNKIRYNAKRRHWRRTKLGL 51
>sp|Q758D8|RL39_ASHGO 60S ribosomal protein L39 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL39 PE=3
SV=3
Length = 51
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M + K+F IK+KLAK QNRP+P W R++T+NTIRYNAKRRHWRRTK+G
Sbjct: 1 MAAKKSFKIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKMGI 51
>sp|P48536|RL39_KLUMA 60S ribosomal protein L39 OS=Kluyveromyces marxianus GN=RPL39
PE=3 SV=2
Length = 51
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M + K+F+IK+KLAK QNRP+P W R++T+NTIRYNAKRRHWRRTKL
Sbjct: 1 MAAKKSFIIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKL 49
>sp|P52814|RL39_CAEEL 60S ribosomal protein L39 OS=Caenorhabditis elegans GN=rpl-39
PE=3 SV=1
Length = 51
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M + K IK+KLAKK +QNRP+P W+RM+T NT++YNAKRRHWRRTKL
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51
>sp|O16130|RL39_DROME 60S ribosomal protein L39 OS=Drosophila melanogaster GN=RpL39
PE=3 SV=2
Length = 51
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +HK+F IK+KLAKK++QNR +P W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1 MAAHKSFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKL 49
>sp|P0DJ61|RL39_TETTS 60S ribosomal protein L39 OS=Tetrahymena thermophila (strain
SB210) GN=RPL39 PE=1 SV=1
Length = 52
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M ++KT +KK+ +K++QNRP+P+W R ++D IRYN+KRR+WRRTKL
Sbjct: 1 MGANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKL 49
>sp|P04650|RL39_YEAST 60S ribosomal protein L39 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL39 PE=1 SV=3
Length = 51
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51
M + K+F IK+K+AK +QNRP+P WIR+RT+NTIRYNAKRR+WRRTK+
Sbjct: 1 MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKMNI 51
>sp|A8MAL5|RL39_CALMQ 50S ribosomal protein L39e OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=rpl39e PE=3 SV=1
Length = 52
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +HK K +LA + NR P W+ ++TD + YN KRR+WRR KL
Sbjct: 1 MATHKPLGFKLRLASAGKSNRNPPAWVMVKTDRKVTYNTKRRNWRRVKL 49
>sp|P59472|RL39_AERPE 50S ribosomal protein L39e OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpl39e PE=3 SV=1
Length = 51
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LA+ ++ NR IP W+ +RT IR+N RRHWRR+KL
Sbjct: 1 MARNKPLGRKLRLARALKSNRAIPVWVVIRTSRRIRFNLLRRHWRRSKL 49
>sp|O28212|RL39_ARCFU 50S ribosomal protein L39e OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl39e PE=3 SV=1
Length = 50
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 5 KTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
KT +KK+LAK +QNR P WI ++T ++ + KRRHWRR+KL
Sbjct: 4 KTVGVKKRLAKAYKQNRRAPVWITVKTKRSVFGSPKRRHWRRSKL 48
>sp|P13005|RL39_SULAC 50S ribosomal protein L39e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl39e PE=1 SV=2
Length = 51
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M HK+ K +L K +++N PIP W+ ++T IR+N RR+WRR L
Sbjct: 1 MSKHKSLGKKLRLGKALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNL 49
>sp|A4YH79|RL39_METS5 50S ribosomal protein L39e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rpl39e PE=3 SV=1
Length = 51
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K +KK+L K ++ N +P W+ ++T+ +R+N KRR+WRR L
Sbjct: 1 MSRYKPSGLKKRLNKALKSNSSVPAWVILKTNGEVRFNPKRRNWRRNDL 49
>sp|P59473|RL39_PYRHO 50S ribosomal protein L39e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl39e PE=3 SV=1
Length = 51
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK M+QNR +P W+ +RT+ + + KRRHWRRTKL
Sbjct: 1 MARNKPLAKKLRLAKAMKQNRRVPVWVIVRTNRRVLTHPKRRHWRRTKL 49
>sp|Q8SQP8|RL39_ENCCU 60S ribosomal protein L39 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL39 PE=3 SV=1
Length = 52
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M S KT ++K +L + +++NR IP W RM ++ YN RRHWR KL
Sbjct: 1 MGSRKTALVKTRLMRALKRNREIPAWKRMMKEHKGEYNRARRHWRSKKL 49
>sp|Q9UYI8|RL39_PYRAB 50S ribosomal protein L39e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl39e PE=3 SV=1
Length = 51
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK M+QNR +P W+ ++T+ + + KRRHWRRTKL
Sbjct: 1 MARNKPLAKKLRLAKAMKQNRRVPVWVIVKTNRRVLTHPKRRHWRRTKL 49
>sp|Q5JGT6|RL39_PYRKO 50S ribosomal protein L39e OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rpl39e PE=3 SV=1
Length = 51
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K F K +LAK +QNR +P W+ ++T+ + + KRRHWRRTKL
Sbjct: 1 MARNKPFAKKLRLAKAAKQNRRVPVWVIVKTNRKVITHPKRRHWRRTKL 49
>sp|B9LUV0|RL39_HALLT 50S ribosomal protein L39e OS=Halorubrum lacusprofundi (strain
ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl39e
PE=3 SV=1
Length = 50
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 3 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
K+ KK+LAK RQN +P W+ M+TD + N KRR+WRR L
Sbjct: 2 GDKSKAQKKRLAKAERQNTRVPAWVMMKTDMNVTRNPKRRNWRRNDL 48
>sp|A2BN55|RL39_HYPBU 50S ribosomal protein L39e OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl39e PE=3 SV=1
Length = 51
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M K K +LAK ++QNR +P W+ ++T+ R + KRRHWRRTKL
Sbjct: 1 MAHFKPLGKKLRLAKALKQNRSVPIWVIIKTNRRFRDHPKRRHWRRTKL 49
>sp|Q980F9|RL39_SULSO 50S ribosomal protein L39e OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpl39e PE=3
SV=2
Length = 51
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK ++ N PIP WI ++T +RYN RR+WRR L
Sbjct: 1 MSRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDL 49
>sp|C3N7D1|RL39_SULIY 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl39e PE=3 SV=1
Length = 51
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK ++ N PIP WI ++T +RYN RR+WRR L
Sbjct: 1 MSRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDL 49
>sp|C3MXG5|RL39_SULIM 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=rpl39e PE=3 SV=1
Length = 51
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK ++ N PIP WI ++T +RYN RR+WRR L
Sbjct: 1 MSRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDL 49
>sp|C3MR76|RL39_SULIL 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rpl39e PE=3 SV=1
Length = 51
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK ++ N PIP WI ++T +RYN RR+WRR L
Sbjct: 1 MSRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDL 49
>sp|C4KII9|RL39_SULIK 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=rpl39e PE=3 SV=1
Length = 51
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK ++ N PIP WI ++T +RYN RR+WRR L
Sbjct: 1 MSRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDL 49
>sp|C3MZB1|RL39_SULIA 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
M.16.27) GN=rpl39e PE=3 SV=1
Length = 51
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK ++ N PIP WI ++T +RYN RR+WRR L
Sbjct: 1 MSRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPLRRNWRRNDL 49
>sp|C3NGA3|RL39_SULIN 50S ribosomal protein L39e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl39e PE=3 SV=1
Length = 51
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK ++ N PIP WI ++T +RYN RR+WRR L
Sbjct: 1 MSRNKPVAKKFRLAKALKANSPIPIWIVLKTRGRVRYNPFRRNWRRNDL 49
>sp|C5A7H4|RL39_THEGJ 50S ribosomal protein L39e OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rpl39e PE=3 SV=1
Length = 51
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK +QNR +P W+ ++T+ + + KRRHWRRTKL
Sbjct: 1 MARNKPLAKKLRLAKAAKQNRRVPVWVIVKTNRKVMTHPKRRHWRRTKL 49
>sp|Q971I1|RL39_SULTO 50S ribosomal protein L39e OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=rpl39e PE=3
SV=1
Length = 51
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LA+ ++ N P+P W+ ++T+ RYN RR WRR L
Sbjct: 1 MSKNKPLGRKLRLARALKSNSPVPAWVIIKTNGKFRYNFHRRDWRRNDL 49
>sp|P22452|RL39_HALMA 50S ribosomal protein L39e OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl39e
PE=1 SV=2
Length = 50
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 5 KTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRT 47
K+ KK+LAK QN +P W+ ++TD ++ N KRRHWRR
Sbjct: 4 KSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRN 46
>sp|Q8U3S6|RL39_PYRFU 50S ribosomal protein L39e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl39e PE=1 SV=1
Length = 51
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K +LAK ++QNR +P W+ ++T+ + + KRR+WRRTKL
Sbjct: 1 MARNKPLAKKLRLAKALKQNRRVPVWVIVKTNRRVLTHPKRRYWRRTKL 49
>sp|Q8TUY3|RL39_METKA 50S ribosomal protein L39e OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl39e PE=3
SV=1
Length = 51
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 5 KTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
K K ++AK ++QNR +P W+ +T + N KRRHWRR+KL
Sbjct: 5 KPLGKKLRMAKAIKQNRRVPPWVVAKTGGRVIDNPKRRHWRRSKL 49
>sp|O27650|RL39_METTH 50S ribosomal protein L39e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl39e PE=3 SV=1
Length = 51
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 49
M +K K ++AK RQNR +P W+ ++T+ +R + K RHWRRTKL
Sbjct: 1 MSRNKHVARKLRMAKANRQNRRVPAWVMVKTNYRVRSHPKMRHWRRTKL 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.135 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,182,839
Number of Sequences: 539616
Number of extensions: 411272
Number of successful extensions: 1350
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1263
Number of HSP's gapped (non-prelim): 80
length of query: 51
length of database: 191,569,459
effective HSP length: 24
effective length of query: 27
effective length of database: 178,618,675
effective search space: 4822704225
effective search space used: 4822704225
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)