BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035398
         (53 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O57321|EAA1_AMBTI Excitatory amino acid transporter 1 OS=Ambystoma tigrinum GN=SLC1A3
           PE=2 SV=1
          Length = 543

 Score = 31.2 bits (69), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 1   MAPPPGPYSGTSTLALVARVSAFSFGLVYGNIKL--KYLKSKAKSLKKA 47
           M P PG  +G + L LV  V +  FGLV GN+K   K LK    SL +A
Sbjct: 232 MIPVPGAVNGVNALGLV--VFSMCFGLVIGNMKEQGKALKDFFDSLNEA 278


>sp|P24942|EAA1_RAT Excitatory amino acid transporter 1 OS=Rattus norvegicus GN=Slc1a3
           PE=1 SV=2
          Length = 543

 Score = 29.6 bits (65), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 1   MAPPPGPYSGTSTLALVARVSAFSFGLVYGNIK 33
           M P PG  +G + L LV  V +  FG V GN+K
Sbjct: 231 MVPVPGSVNGVNALGLV--VFSMCFGFVIGNMK 261


>sp|P56564|EAA1_MOUSE Excitatory amino acid transporter 1 OS=Mus musculus GN=Slc1a3 PE=1
           SV=2
          Length = 543

 Score = 29.6 bits (65), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 1   MAPPPGPYSGTSTLALVARVSAFSFGLVYGNIK 33
           M P PG  +G + L LV  V +  FG V GN+K
Sbjct: 231 MVPVPGSVNGVNALGLV--VFSMCFGFVIGNMK 261


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.130    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,873,805
Number of Sequences: 539616
Number of extensions: 429745
Number of successful extensions: 892
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 3
length of query: 53
length of database: 191,569,459
effective HSP length: 26
effective length of query: 27
effective length of database: 177,539,443
effective search space: 4793564961
effective search space used: 4793564961
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)