Query 035398
Match_columns 53
No_of_seqs 31 out of 33
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 03:44:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gel_A Putative GRAM negative 65.8 1.5 5.3E-05 28.5 0.4 38 3-40 63-101 (231)
2 3r6m_A YEAZ, resuscitation pro 61.4 2.1 7.2E-05 28.1 0.5 37 4-40 65-102 (213)
3 1zla_K Latent nuclear antigen; 58.1 1.2 4E-05 22.1 -0.9 21 1-22 1-23 (26)
4 2a6a_A Hypothetical protein TM 50.7 5.3 0.00018 26.1 1.0 36 4-39 75-111 (218)
5 3cdw_H Protein 3B, VPG; RNA-de 48.8 5 0.00017 19.7 0.5 7 6-12 1-7 (26)
6 2jq5_A SEC-C motif; structural 32.0 16 0.00053 22.7 0.9 14 15-28 31-44 (128)
7 4f4l_A ION transport protein; 28.1 12 0.00042 21.8 0.0 12 42-53 101-112 (112)
8 1qf8_A Casein kinase II; casei 25.6 39 0.0013 22.2 2.0 15 25-39 76-90 (182)
9 4dgl_A Casein kinase II subuni 24.8 40 0.0014 22.9 2.0 16 25-40 76-91 (215)
10 2i9w_A Hypothetical protein; c 24.4 26 0.00088 23.2 1.0 14 15-28 56-69 (184)
No 1
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=65.78 E-value=1.5 Score=28.49 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCCCCCCChhHHHHHHHHhhhhhhh-hhhhhhHHHhHHH
Q 035398 3 PPPGPYSGTSTLALVARVSAFSFGL-VYGNIKLKYLKSK 40 (53)
Q Consensus 3 ~~~g~ysgtStlanV~R~SAl~~Gv-~YG~~h~~~Lka~ 40 (53)
-.||+|.|.-.++.++|-.|+++++ ++|.-|+..+-..
T Consensus 63 ~GPGsftglRig~~~ak~la~~~~~Pl~~V~~l~a~a~~ 101 (231)
T 2gel_A 63 RGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQG 101 (231)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTTTCCEEEECHHHHHHHH
T ss_pred cCCChhHhHHHHHHHHHHHHHHcCCCEEEeccHHHHHHH
Confidence 3589998888888889999988888 8888888877553
No 2
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=61.43 E-value=2.1 Score=28.13 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhh-hhhhhhHHHhHHH
Q 035398 4 PPGPYSGTSTLALVARVSAFSFGL-VYGNIKLKYLKSK 40 (53)
Q Consensus 4 ~~g~ysgtStlanV~R~SAl~~Gv-~YG~~h~~~Lka~ 40 (53)
.||+|.|--.++-++|-.|+++++ ++|.-|+..+-..
T Consensus 65 GPGsfTglRig~~~AkgLa~~~~iPl~gVstL~a~a~~ 102 (213)
T 3r6m_A 65 GPGSFTGVRIGIGIAQGLAFGAELPMIGVSTLAAMAQA 102 (213)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCCCEEEEcCHHHHHHh
Confidence 489999999999999999999988 8888888776543
No 3
>1zla_K Latent nuclear antigen; latency associated nuclear antigen (LANA), kaposi'S sarcoma herpes virus (KSHV), nucleosome core particle, chromatin; 2.90A {Xenopus laevis}
Probab=58.13 E-value=1.2 Score=22.09 Aligned_cols=21 Identities=57% Similarity=0.616 Sum_probs=15.9
Q ss_pred CCCCCC--CCCChhHHHHHHHHhh
Q 035398 1 MAPPPG--PYSGTSTLALVARVSA 22 (53)
Q Consensus 1 m~~~~g--~ysgtStlanV~R~SA 22 (53)
|+ ||| .-||-||++-..|-|.
T Consensus 1 ma-ppgmrlrsgrstgapltrgs~ 23 (26)
T 1zla_K 1 MA-PPGMRLRSGRSTGAPLTRGSX 23 (26)
T ss_pred CC-CCcceeecCcccCCccccccc
Confidence 45 677 7899999887777654
No 4
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=50.70 E-value=5.3 Score=26.07 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhh-hhhhhhHHHhHH
Q 035398 4 PPGPYSGTSTLALVARVSAFSFGL-VYGNIKLKYLKS 39 (53)
Q Consensus 4 ~~g~ysgtStlanV~R~SAl~~Gv-~YG~~h~~~Lka 39 (53)
.||+|.|.-.++-++|-.|+++|+ ++|.-|+..+-.
T Consensus 75 GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~l~a~a~ 111 (218)
T 2a6a_A 75 GPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAK 111 (218)
T ss_dssp CSSCHHHHHHHHHHHHHHHGGGTCCEEEECHHHHHHH
T ss_pred CCCchHhHHHHHHHHHHHHHHcCCCEEEeCcHHHHHh
Confidence 589999999999999999999987 678777766543
No 5
>3cdw_H Protein 3B, VPG; RNA-dependent RNA polymerase, protein primer vizier viral enzymes involved in replication, transferase-V protein complex; 2.50A {Coxsackievirus B3} PDB: 2bbl_A 2bbp_A
Probab=48.79 E-value=5 Score=19.74 Aligned_cols=7 Identities=43% Similarity=1.104 Sum_probs=5.7
Q ss_pred CCCCChh
Q 035398 6 GPYSGTS 12 (53)
Q Consensus 6 g~ysgtS 12 (53)
|||||-+
T Consensus 1 G~YsG~p 7 (26)
T 3cdw_H 1 GAYTGVP 7 (26)
T ss_pred CCccCCC
Confidence 7899965
No 6
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=32.02 E-value=16 Score=22.68 Aligned_cols=14 Identities=14% Similarity=0.263 Sum_probs=11.5
Q ss_pred HHHHHHhhhhhhhh
Q 035398 15 ALVARVSAFSFGLV 28 (53)
Q Consensus 15 anV~R~SAl~~Gv~ 28 (53)
..=.|||||+.|.+
T Consensus 31 LMRSRYsAyv~~~~ 44 (128)
T 2jq5_A 31 LMRSRYAAYALKDF 44 (128)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHhhhceeeecCCc
Confidence 45689999999973
No 7
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=28.13 E-value=12 Score=21.78 Aligned_cols=12 Identities=33% Similarity=0.626 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCC
Q 035398 42 KSLKKAEAKGHH 53 (53)
Q Consensus 42 ~~~k~~~e~~~h 53 (53)
++++++++.+||
T Consensus 101 ~~~~~~~~~~~h 112 (112)
T 4f4l_A 101 KEQEEEAKTGHH 112 (112)
T ss_dssp ------------
T ss_pred HHHHHHHHHhCc
Confidence 334444444565
No 8
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=25.58 E-value=39 Score=22.24 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=12.0
Q ss_pred hhhhhhhhhHHHhHH
Q 035398 25 FGLVYGNIKLKYLKS 39 (53)
Q Consensus 25 ~Gv~YG~~h~~~Lka 39 (53)
+-.+||.+|.|+|-.
T Consensus 76 a~~LYGLIHaRyIlT 90 (182)
T 1qf8_A 76 AEMLYGLIHARYILT 90 (182)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHhchhhhhhccc
Confidence 456899999998743
No 9
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=24.78 E-value=40 Score=22.91 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=12.8
Q ss_pred hhhhhhhhhHHHhHHH
Q 035398 25 FGLVYGNIKLKYLKSK 40 (53)
Q Consensus 25 ~Gv~YG~~h~~~Lka~ 40 (53)
+=.+||.||.|+|-..
T Consensus 76 A~~LYGLIHARYIlT~ 91 (215)
T 4dgl_A 76 AEMLYGLIHARYILTN 91 (215)
T ss_dssp HHHHHHHHHHHHTTSH
T ss_pred HHHHhhhhhHhheecH
Confidence 4578999999997643
No 10
>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1
Probab=24.41 E-value=26 Score=23.22 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhhhh
Q 035398 15 ALVARVSAFSFGLV 28 (53)
Q Consensus 15 anV~R~SAl~~Gv~ 28 (53)
..=.|||||+.|-+
T Consensus 56 LMRSRYSAfvl~~~ 69 (184)
T 2i9w_A 56 LMRTRYSAFVLVKP 69 (184)
T ss_dssp HHHHHHHHHHHTCH
T ss_pred HHHHhHHHHHcccH
Confidence 45689999999964
Done!