Query 035398
Match_columns 53
No_of_seqs 31 out of 33
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 03:44:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035398.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035398hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l8na2 d.92.2.2 (A:4-142) alp 58.8 1.8 0.00013 24.7 1.3 14 25-38 109-122 (139)
2 d1okja1 c.55.1.9 (A:1-106) Hyp 58.6 1.5 0.00011 24.1 0.9 34 4-37 63-97 (106)
3 d1h41a2 d.92.2.2 (A:5-151) alp 53.5 2.5 0.00018 24.4 1.3 15 25-39 118-132 (147)
4 d2a6aa1 c.55.1.9 (A:1-103) Hyp 48.3 3 0.00022 22.5 1.0 34 4-37 63-97 (103)
5 d2i9wa1 d.17.4.30 (A:46-158) H 40.8 4.6 0.00033 23.0 1.0 14 15-28 10-23 (113)
6 d1qf8a_ g.41.4.1 (A:) Casein k 38.4 8.3 0.0006 23.7 2.0 17 25-41 70-86 (173)
7 d2bdta1 c.37.1.25 (A:1-176) Hy 27.9 11 0.00082 19.2 1.2 14 3-18 9-22 (176)
8 d1y63a_ c.37.1.1 (A:) Probable 26.0 19 0.0013 18.7 1.9 13 4-18 13-25 (174)
9 d1khta_ c.37.1.1 (A:) Adenylat 23.5 15 0.0011 18.9 1.2 14 3-18 8-21 (190)
10 d1vr8a1 d.312.1.1 (A:25-154) H 23.3 9.8 0.00071 23.1 0.4 14 4-18 1-14 (130)
11 d1knqa_ c.37.1.17 (A:) Glucona 23.1 23 0.0016 18.4 1.9 14 3-18 13-26 (171)
12 d1rkba_ c.37.1.1 (A:) Adenylat 22.9 23 0.0017 18.2 1.9 13 4-18 12-24 (173)
13 d2choa3 d.92.2.3 (A:5-126) Glu 22.7 17 0.0012 19.0 1.3 13 25-37 94-106 (122)
14 d1ly1a_ c.37.1.1 (A:) Polynucl 22.6 14 0.00099 19.1 0.9 13 3-17 9-21 (152)
15 d2e74g1 f.23.26.1 (G:9-35) Pet 21.8 17 0.0012 16.8 1.0 12 23-34 9-20 (27)
16 d2c0sa1 a.30.7.1 (A:1-57) Hypo 21.0 15 0.0011 19.4 0.9 16 27-42 22-37 (57)
17 d1oxwa_ c.19.1.3 (A:) Patatin 20.9 13 0.00098 22.3 0.7 11 8-18 49-59 (360)
18 d1g8aa_ c.66.1.3 (A:) Fibrilla 20.5 8 0.00058 23.5 -0.5 33 1-33 69-106 (227)
No 1
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=58.82 E-value=1.8 Score=24.72 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=11.2
Q ss_pred hhhhhhhhhHHHhH
Q 035398 25 FGLVYGNIKLKYLK 38 (53)
Q Consensus 25 ~Gv~YG~~h~~~Lk 38 (53)
.|++||.+|+.-+-
T Consensus 109 ~G~lYGvf~Ll~~l 122 (139)
T d1l8na2 109 AGVLYGVFHFLRLL 122 (139)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 59999999985543
No 2
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=58.64 E-value=1.5 Score=24.07 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=28.4
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhh-hhhhhhHHHh
Q 035398 4 PPGPYSGTSTLALVARVSAFSFGL-VYGNIKLKYL 37 (53)
Q Consensus 4 ~~g~ysgtStlanV~R~SAl~~Gv-~YG~~h~~~L 37 (53)
-||.|+|.=.++.+++.-++..++ +||.-++..|
T Consensus 63 GPGsfTglRig~s~akgla~~~~ip~~~v~sl~~l 97 (106)
T d1okja1 63 GPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTM 97 (106)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHcCCCEEEeCHHHHH
Confidence 499999999999999999998887 6777666555
No 3
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=53.45 E-value=2.5 Score=24.44 Aligned_cols=15 Identities=33% Similarity=0.653 Sum_probs=11.8
Q ss_pred hhhhhhhhhHHHhHH
Q 035398 25 FGLVYGNIKLKYLKS 39 (53)
Q Consensus 25 ~Gv~YG~~h~~~Lka 39 (53)
-|++||.+|+..+-+
T Consensus 118 rG~LYG~f~lLr~l~ 132 (147)
T d1h41a2 118 VGVLYGSFHLLRLIQ 132 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHHHH
Confidence 499999999876543
No 4
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=48.31 E-value=3 Score=22.52 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=25.0
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhh-hhhhhhHHHh
Q 035398 4 PPGPYSGTSTLALVARVSAFSFGL-VYGNIKLKYL 37 (53)
Q Consensus 4 ~~g~ysgtStlanV~R~SAl~~Gv-~YG~~h~~~L 37 (53)
.||.|.|.=.++-+++--+++.++ +||+-++..|
T Consensus 63 GPGsfTglRig~s~akgla~~~~ip~~gis~l~~l 97 (103)
T d2a6aa1 63 GPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMT 97 (103)
T ss_dssp CSSCHHHHHHHHHHHHHHHGGGTCCEEEECHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHcCCCEEEeCHHHHH
Confidence 589998888888888887777776 5666555544
No 5
>d2i9wa1 d.17.4.30 (A:46-158) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=40.82 E-value=4.6 Score=23.04 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=11.4
Q ss_pred HHHHHHhhhhhhhh
Q 035398 15 ALVARVSAFSFGLV 28 (53)
Q Consensus 15 anV~R~SAl~~Gv~ 28 (53)
..=.||||+..|-+
T Consensus 10 LMRSRYSAy~~~~~ 23 (113)
T d2i9wa1 10 LMRTRYSAFVLVKP 23 (113)
T ss_dssp HHHHHHHHHHHTCH
T ss_pred HHHhhhHhhhcCCc
Confidence 35589999999985
No 6
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.36 E-value=8.3 Score=23.67 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=13.4
Q ss_pred hhhhhhhhhHHHhHHHH
Q 035398 25 FGLVYGNIKLKYLKSKA 41 (53)
Q Consensus 25 ~Gv~YG~~h~~~Lka~~ 41 (53)
+-.+||.+|+|.|....
T Consensus 70 a~~LYGLIHaRyI~T~~ 86 (173)
T d1qf8a_ 70 AEMLYGLIHARYILTNR 86 (173)
T ss_dssp HHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhhhheeecHh
Confidence 45689999999997543
No 7
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=27.86 E-value=11 Score=19.24 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=9.7
Q ss_pred CCCCCCCChhHHHHHH
Q 035398 3 PPPGPYSGTSTLALVA 18 (53)
Q Consensus 3 ~~~g~ysgtStlanV~ 18 (53)
.||| ||-||+++-+
T Consensus 9 G~~G--sGKTTva~~L 22 (176)
T d2bdta1 9 GPAG--VGKSTTCKRL 22 (176)
T ss_dssp CSTT--SSHHHHHHHH
T ss_pred CCCC--CCHHHHHHHH
Confidence 3555 8999987644
No 8
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=26.04 E-value=19 Score=18.74 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=9.9
Q ss_pred CCCCCCChhHHHHHH
Q 035398 4 PPGPYSGTSTLALVA 18 (53)
Q Consensus 4 ~~g~ysgtStlanV~ 18 (53)
||| ||-||+++.+
T Consensus 13 ~~G--sGKTT~~~~L 25 (174)
T d1y63a_ 13 TPG--TGKTSMAEMI 25 (174)
T ss_dssp STT--SSHHHHHHHH
T ss_pred CCC--CCHHHHHHHH
Confidence 455 7999988777
No 9
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=23.47 E-value=15 Score=18.92 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=10.3
Q ss_pred CCCCCCCChhHHHHHH
Q 035398 3 PPPGPYSGTSTLALVA 18 (53)
Q Consensus 3 ~~~g~ysgtStlanV~ 18 (53)
.+|| ||-||+++-+
T Consensus 8 G~~G--sGKsT~~~~L 21 (190)
T d1khta_ 8 GVPG--VGSTTSSQLA 21 (190)
T ss_dssp CCTT--SCHHHHHHHH
T ss_pred CCCC--CCHHHHHHHH
Confidence 4677 8999987644
No 10
>d1vr8a1 d.312.1.1 (A:25-154) Hypothetical protein TM1622 {Thermotoga maritima [TaxId: 2336]}
Probab=23.29 E-value=9.8 Score=23.12 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=10.7
Q ss_pred CCCCCCChhHHHHHH
Q 035398 4 PPGPYSGTSTLALVA 18 (53)
Q Consensus 4 ~~g~ysgtStlanV~ 18 (53)
|||.||=.|++ +++
T Consensus 1 pP~sySl~sAi-~iL 14 (130)
T d1vr8a1 1 PPEAYSLDTAI-FVL 14 (130)
T ss_dssp CCTTSCHHHHH-HTT
T ss_pred CCccccHHHHH-HHh
Confidence 79999988883 553
No 11
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=23.06 E-value=23 Score=18.39 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=10.5
Q ss_pred CCCCCCCChhHHHHHH
Q 035398 3 PPPGPYSGTSTLALVA 18 (53)
Q Consensus 3 ~~~g~ysgtStlanV~ 18 (53)
.+|| ||-||+++.+
T Consensus 13 G~~G--sGKsT~a~~L 26 (171)
T d1knqa_ 13 GVSG--SGKSAVASEV 26 (171)
T ss_dssp CSTT--SCHHHHHHHH
T ss_pred CCCC--CCHHHHHHHH
Confidence 4666 8999987754
No 12
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=22.93 E-value=23 Score=18.15 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=8.8
Q ss_pred CCCCCCChhHHHHHH
Q 035398 4 PPGPYSGTSTLALVA 18 (53)
Q Consensus 4 ~~g~ysgtStlanV~ 18 (53)
||| ||=||+++-+
T Consensus 12 ~pG--sGKTTia~~L 24 (173)
T d1rkba_ 12 TPG--VGKTTLGKEL 24 (173)
T ss_dssp STT--SSHHHHHHHH
T ss_pred CCC--CCHHHHHHHH
Confidence 455 7989976544
No 13
>d2choa3 d.92.2.3 (A:5-126) Glucosaminidase GH84, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=22.75 E-value=17 Score=19.01 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=10.1
Q ss_pred hhhhhhhhhHHHh
Q 035398 25 FGLVYGNIKLKYL 37 (53)
Q Consensus 25 ~Gv~YG~~h~~~L 37 (53)
.|+|||..=++-|
T Consensus 94 ~G~~yg~qTL~QL 106 (122)
T d2choa3 94 RGTYYALQTFAQL 106 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999998776655
No 14
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=22.63 E-value=14 Score=19.08 Aligned_cols=13 Identities=54% Similarity=0.531 Sum_probs=9.4
Q ss_pred CCCCCCCChhHHHHH
Q 035398 3 PPPGPYSGTSTLALV 17 (53)
Q Consensus 3 ~~~g~ysgtStlanV 17 (53)
.+|| ||=||+++-
T Consensus 9 G~pG--sGKTTla~~ 21 (152)
T d1ly1a_ 9 GCPG--SGKSTWARE 21 (152)
T ss_dssp CCTT--SSHHHHHHH
T ss_pred CCCC--CCHHHHHHH
Confidence 3555 899998873
No 15
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.76 E-value=17 Score=16.78 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=9.3
Q ss_pred hhhhhhhhhhhH
Q 035398 23 FSFGLVYGNIKL 34 (53)
Q Consensus 23 l~~Gv~YG~~h~ 34 (53)
-..|+||..++|
T Consensus 9 tl~glf~aayqq 20 (27)
T d2e74g1 9 TLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356999998876
No 16
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=21.01 E-value=15 Score=19.43 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=12.3
Q ss_pred hhhhhhhHHHhHHHHh
Q 035398 27 LVYGNIKLKYLKSKAK 42 (53)
Q Consensus 27 v~YG~~h~~~Lka~~~ 42 (53)
--||+.|+++|.-+.+
T Consensus 22 ~~YGf~h~kvl~~SQE 37 (57)
T d2c0sa1 22 EKYGFTHHKVISFSQE 37 (57)
T ss_dssp HHTCTTSHHHHHHHHH
T ss_pred HHHCCCchHHHHHHHH
Confidence 3599999999986543
No 17
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]}
Probab=20.92 E-value=13 Score=22.30 Aligned_cols=11 Identities=45% Similarity=0.486 Sum_probs=9.9
Q ss_pred CCChhHHHHHH
Q 035398 8 YSGTSTLALVA 18 (53)
Q Consensus 8 ysgtStlanV~ 18 (53)
.+|||+++.++
T Consensus 49 i~GTS~Gaiia 59 (360)
T d1oxwa_ 49 IGGTSTGGLLT 59 (360)
T ss_dssp EEECTHHHHHH
T ss_pred EEEecHHHHHH
Confidence 79999999887
No 18
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.52 E-value=8 Score=23.52 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=24.2
Q ss_pred CCCCCC---CCCChhHHHHHHHHhhhh--hhhhhhhhh
Q 035398 1 MAPPPG---PYSGTSTLALVARVSAFS--FGLVYGNIK 33 (53)
Q Consensus 1 m~~~~g---~ysgtStlanV~R~SAl~--~Gv~YG~~h 33 (53)
+++.|| +|-|..++..+...|-.. -|.+||.=-
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~ 106 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEF 106 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEES
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeC
Confidence 356677 677877777777887765 589999743
Done!