Query 035401
Match_columns 50
No_of_seqs 112 out of 155
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 93.7 0.0077 2.6E-07 41.2 -0.9 40 2-41 347-386 (408)
2 3zy2_A Putative GDP-fucose pro 90.6 0.048 1.6E-06 39.2 0.0 37 2-38 315-354 (362)
3 4ayl_A BOGT-metal-independent 24.0 40 0.0014 22.8 1.9 18 4-21 88-105 (246)
4 3ioh_A Histo-blood group ABO s 23.4 41 0.0014 23.5 1.9 44 4-47 148-200 (298)
5 2jsp_A Transcriptional regulat 17.9 33 0.0011 20.0 0.4 8 5-12 20-27 (87)
6 1o7q_A N-acetyllactosaminide a 16.9 70 0.0024 22.2 2.0 18 4-21 139-156 (289)
7 2pgd_A 6-phosphogluconate dehy 14.3 43 0.0015 23.2 0.3 20 24-43 439-458 (482)
8 1pgj_A 6PGDH, 6-PGDH, 6-phosph 14.1 42 0.0014 23.4 0.2 21 24-44 446-466 (478)
9 2iz1_A 6-phosphogluconate dehy 13.9 45 0.0016 23.0 0.4 22 23-44 441-462 (474)
10 1q44_A RARO47, steroid sulfotr 13.5 86 0.003 20.5 1.6 12 9-20 63-74 (326)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=93.68 E-value=0.0077 Score=41.16 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=35.8
Q ss_pred cceeeeeeeccceeeecCCCCHHHHHhhhhhhccCcchhh
Q 035401 2 AALDYMVSVESDVFIPSHLGNMARAVEGHLMLRIEQDYRN 41 (50)
Q Consensus 2 AAlDy~V~~~SDvFv~t~~GNm~~~v~GhR~y~g~~~~k~ 41 (50)
|.||-.||.+|++||.|..-.|...|.=.|-+.|.|..-.
T Consensus 347 a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t 386 (408)
T 4ap5_A 347 AIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTT 386 (408)
T ss_dssp HHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGT
T ss_pred hHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCcc
Confidence 5689999999999999999999999999999999875543
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=90.64 E-value=0.048 Score=39.21 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=33.6
Q ss_pred cceeeeeeeccceeeecCCCCHHHHHhhhhhhcc---Ccc
Q 035401 2 AALDYMVSVESDVFIPSHLGNMARAVEGHLMLRI---EQD 38 (50)
Q Consensus 2 AAlDy~V~~~SDvFv~t~~GNm~~~v~GhR~y~g---~~~ 38 (50)
|.||.+||.+||+||.+..-.|...|.=.|--.| +|.
T Consensus 315 a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G~~~~ps 354 (362)
T 3zy2_A 315 MYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAGQSPRPS 354 (362)
T ss_dssp HHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSSSSCCCE
T ss_pred hHHHHHHHHhCCEeecCccccccHHHHHHHHhcCCCCCCc
Confidence 6899999999999999999999999999998888 664
No 3
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=24.00 E-value=40 Score=22.84 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=15.4
Q ss_pred eeeeeeeccceeeecCCC
Q 035401 4 LDYMVSVESDVFIPSHLG 21 (50)
Q Consensus 4 lDy~V~~~SDvFv~t~~G 21 (50)
.||++|..+|.-+...-|
T Consensus 88 vDyLf~~dvd~~F~~~vG 105 (246)
T 4ayl_A 88 TDYLFFFNANLLFTSPIG 105 (246)
T ss_dssp CSEEEEECTTEEECSCBC
T ss_pred CCEEEEEeCCceeeccCC
Confidence 699999999987777666
No 4
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=23.39 E-value=41 Score=23.48 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=27.2
Q ss_pred eeeeeeeccceeeecCCCC-H-HHHH-hhhhhhccCc------chhhhhhhhc
Q 035401 4 LDYMVSVESDVFIPSHLGN-M-ARAV-EGHLMLRIEQ------DYRNKYKIVV 47 (50)
Q Consensus 4 lDy~V~~~SDvFv~t~~GN-m-~~~v-~GhR~y~g~~------~~k~l~~lf~ 47 (50)
.||++|..+|.-+..+-|- . ..+| +=|-.|.+++ +|+..++-++
T Consensus 148 vDyLfc~dvd~~F~~~vG~E~Lg~lva~lHp~~y~~~~~~FpYERrp~S~AyI 200 (298)
T 3ioh_A 148 VDYLVCVDVDMEFRDHVGVEILTPLFGTLHPGFYGSSREAFTYERRPQSQAYI 200 (298)
T ss_dssp CSEEEEEESSEEECSCBCGGGCSSEEEEBCTTTTTSCGGGSCCCCCTTSTTCC
T ss_pred CCEEEEecCCCeeccCccHHHhHhhHhhcChhhhcCCcccCcccCCccccccc
Confidence 6999999999988887761 1 1122 2366666554 4455544444
No 5
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=17.89 E-value=33 Score=19.99 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=6.0
Q ss_pred eeeeeecc
Q 035401 5 DYMVSVES 12 (50)
Q Consensus 5 Dy~V~~~S 12 (50)
|+|||++.
T Consensus 20 d~iiClec 27 (87)
T 2jsp_A 20 DHIVCLEC 27 (87)
T ss_dssp SCEECTBT
T ss_pred CceEeccc
Confidence 78888774
No 6
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=16.94 E-value=70 Score=22.20 Aligned_cols=18 Identities=17% Similarity=0.588 Sum_probs=15.5
Q ss_pred eeeeeeeccceeeecCCC
Q 035401 4 LDYMVSVESDVFIPSHLG 21 (50)
Q Consensus 4 lDy~V~~~SDvFv~t~~G 21 (50)
.||++|..+|.-+...-|
T Consensus 139 vDYLf~~dvd~~F~~~vG 156 (289)
T 1o7q_A 139 VDFLFCMDVDQVFQDKFG 156 (289)
T ss_dssp CSEEEEECSSEEECSCBC
T ss_pred CCEEEEeeCCcEeeccCC
Confidence 699999999987777766
No 7
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=14.29 E-value=43 Score=23.20 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=16.2
Q ss_pred HHHHhhhhhhccCcchhhhh
Q 035401 24 ARAVEGHLMLRIEQDYRNKY 43 (50)
Q Consensus 24 ~~~v~GhR~y~g~~~~k~l~ 43 (50)
+++++++|-|.|-+-+++.-
T Consensus 439 ~~l~qa~rd~fG~h~~~r~~ 458 (482)
T 2pgd_A 439 ANLIQAQRDYFGAHTYELLA 458 (482)
T ss_dssp HHHHHHHHHHHHCCCBCCSS
T ss_pred hhHHHHHHhhcCCceeeecC
Confidence 67899999999987766653
No 8
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=14.06 E-value=42 Score=23.35 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=17.0
Q ss_pred HHHHhhhhhhccCcchhhhhh
Q 035401 24 ARAVEGHLMLRIEQDYRNKYK 44 (50)
Q Consensus 24 ~~~v~GhR~y~g~~~~k~l~~ 44 (50)
+++++++|=|.|-+-++++-+
T Consensus 446 ~~l~qaqrd~fg~h~~~~~~~ 466 (478)
T 1pgj_A 446 GQLVSLQRDVFGRHGYERVDK 466 (478)
T ss_dssp HHHHHHHHHHHHCCCEEBSSS
T ss_pred chhHHHHHHhccCceeeecCC
Confidence 788999999999887766543
No 9
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=13.95 E-value=45 Score=23.02 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=17.2
Q ss_pred HHHHHhhhhhhccCcchhhhhh
Q 035401 23 MARAVEGHLMLRIEQDYRNKYK 44 (50)
Q Consensus 23 m~~~v~GhR~y~g~~~~k~l~~ 44 (50)
.+++++++|-|.|-+-+++.-+
T Consensus 441 ~~~l~qa~rd~fg~h~~~r~~~ 462 (474)
T 2iz1_A 441 PANLIQAQRDYFGAHTYERTDK 462 (474)
T ss_dssp THHHHHHHHHHHHCCCBCBSSS
T ss_pred hhhHHHHHHHhcCCccceecCC
Confidence 3688999999999877766543
No 10
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu genomics, protein structure initiative, center for eukaryot structural genomics; 1.90A {Arabidopsis thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Probab=13.45 E-value=86 Score=20.48 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=10.2
Q ss_pred eeccceeeecCC
Q 035401 9 SVESDVFIPSHL 20 (50)
Q Consensus 9 ~~~SDvFv~t~~ 20 (50)
.-..||||.|++
T Consensus 63 ~r~~Dv~i~syP 74 (326)
T 1q44_A 63 AKDSDIILVTNP 74 (326)
T ss_dssp CCTTCEEEECCT
T ss_pred cCCCCEEEEeCC
Confidence 456899999998
Done!