BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035403
(58 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0DKW8|LTI6B_ORYSJ Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica
GN=LTI6B PE=2 SV=1
Length = 55
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/53 (83%), Positives = 48/53 (90%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
TA C+DIL+A+ILPPLGVFLKFGC EFWICLLLT LGYIPGIIYA+YAITK
Sbjct: 3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55
>sp|A2Y075|LTI6B_ORYSI Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B
PE=3 SV=2
Length = 55
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/53 (83%), Positives = 48/53 (90%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
TA C+DIL+A+ILPPLGVFLKFGC EFWICLLLT LGYIPGIIYA+YAITK
Sbjct: 3 GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55
>sp|Q8H5T6|LTI6A_ORYSJ Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica
GN=LTI6A PE=2 SV=1
Length = 56
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 50/57 (87%), Gaps = 1/57 (1%)
Query: 1 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
MAD STATC+DI+LA+ILPPLGVF KFGC EFWICLLLT GY+PGIIYAV+ ITK
Sbjct: 1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56
>sp|Q9ZNS6|RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2
SV=1
Length = 54
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 49/53 (92%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct: 2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54
>sp|Q9ZNQ7|RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2
SV=1
Length = 54
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 49/53 (92%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
STAT VDI++A++LPPLGVFL+FGC EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct: 2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54
>sp|Q9LRI7|OSR8_ORYSJ Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8
PE=3 SV=1
Length = 72
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 1 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 55
MA G T ++ILLA+ILPPLGVFL+FGC EF ICLLLTILGY+PGIIYAVY +
Sbjct: 1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56
>sp|Q9ARD5|LT02_HORVU Low temperature-induced protein lt101.2 OS=Hordeum vulgare
GN=LT101.2 PE=2 SV=1
Length = 54
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 46/53 (86%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
++AT ++++LA+ILPP+GVFL++G EFWICLLLT+LGYIPGIIYAVY +
Sbjct: 2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLVA 54
>sp|P68179|LT01_HORVU Low temperature-induced protein lt101.1 OS=Hordeum vulgare
GN=LT101.1 PE=2 SV=1
Length = 54
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 44/52 (84%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 56
+AT ++++LA+ILPP+GVFL++ EFWICLLLTILGYIPGIIYAVY +
Sbjct: 2 GSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53
>sp|P68178|ESI3_LOPEL Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum
elongatum GN=ESI3 PE=2 SV=1
Length = 54
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 44/52 (84%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 56
+AT ++++LA+ILPP+GVFL++ EFWICLLLTILGYIPGIIYAVY +
Sbjct: 2 GSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53
>sp|O82232|RC22_ARATH UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana
GN=At2g24040 PE=3 SV=1
Length = 75
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 4 GSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 55
S C +I +A++LPP+GV L+ GC EF+ICL+LT LGY+PGIIYA+YAI
Sbjct: 3 SSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55
>sp|Q9M095|RC23_ARATH UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana
GN=At4g30650 PE=3 SV=1
Length = 73
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
Query: 1 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 55
MA C +IL+A++LPPLGV LK GC EF ICL+LTILGYIPGIIYA+Y I
Sbjct: 1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55
>sp|Q4HXT6|PMP3_GIBZE Plasma membrane proteolipid 3 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PMP3 PE=3
SV=2
Length = 57
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 41/46 (89%)
Query: 12 ILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
I+LA+ILPP+GVFL+ GC A+F+I +LLTILGYIPGII+A+Y I K
Sbjct: 11 IILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYIILK 56
>sp|Q9FE70|RC21_ARATH UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana
GN=At1g57550 PE=2 SV=1
Length = 52
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 41/51 (80%)
Query: 7 ATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
+ +++L A+ +PP+GVFL++G EFW+CLLLT+ +IPG+IYA+Y +TK
Sbjct: 2 GSFLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52
>sp|Q22701|YCU4_CAEEL UPF0057 membrane protein T23F2.4 OS=Caenorhabditis elegans
GN=T23F2.4 PE=3 SV=2
Length = 57
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 39/51 (76%), Gaps = 3/51 (5%)
Query: 8 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 55
TC+DI L A++LPP+GVFL+ GC IC+LLTILGYIPGIIYA Y I
Sbjct: 4 TCMDIPKFLFALLLPPVGVFLEKGCTHHLAICILLTILGYIPGIIYACYII 54
>sp|Q871V2|PMP3_NEUCR Plasma membrane proteolipid 3 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=pmp-3 PE=3 SV=1
Length = 57
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 1 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
MA ++ C I++AVILPPLGVF + GC A+ +I +LLTILGY+PGI++A+Y I K
Sbjct: 1 MAFTASDIC-KIIVAVILPPLGVFFERGCGADLFINILLTILGYLPGIVHALYIILK 56
>sp|Q22700|YCU3_CAEEL UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans
GN=T23F2.3 PE=3 SV=1
Length = 57
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
Query: 8 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 55
TC DI + AV+LPP+GVFL+ GC IC+LLTILGYIPGIIYA Y I
Sbjct: 4 TCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54
>sp|Q6BVN0|PMP3_DEBHA Plasma membrane proteolipid 3 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PMP3 PE=3 SV=1
Length = 57
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 18 LPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
LPPLGVFL+ GC + FWI ++LTILGYIPGII+A+Y I K
Sbjct: 17 LPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56
>sp|Q9SUI0|RC24_ARATH UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana
GN=At4g30660 PE=2 SV=1
Length = 74
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 11 DILLAVILPPLGV-FLKFGCKAEFWICLLLTILGYIPGIIYAVYAIT 56
+I++A++LPPLGV F K C EF ICL+LTILGY+PGIIYA+Y I
Sbjct: 10 EIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIV 56
>sp|Q9I5W9|Y567_PSEAE UPF0057 membrane protein PA0567 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0567
PE=3 SV=1
Length = 52
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 19 PPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 58
PPLGVFL+ G FW+ +LLT+LGYIPGI++AVY I K+
Sbjct: 13 PPLGVFLQVGFGGAFWLNILLTLLGYIPGIVHAVYIIAKR 52
>sp|Q4WYA5|PMP3_ASPFU Plasma membrane proteolipid 3 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=pmp3 PE=3 SV=1
Length = 57
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 36/46 (78%)
Query: 12 ILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
IL A+ILPPLGVFL+ GC A+ I + LTILG+IPGII+A Y I K
Sbjct: 11 ILFAIILPPLGVFLERGCGADLLINICLTILGWIPGIIHAFYIIFK 56
>sp|Q9Y068|RIC1_PHYIN Protein Ric1 OS=Phytophthora infestans GN=RIC1 PE=3 SV=1
Length = 57
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 8 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 58
TC DI + +VI+PP+GVF + GC + I LLT+LGYIPG+I+AVY + K+
Sbjct: 4 TCGDIPRLICSVIIPPVGVFFQVGCTKDLAINCLLTVLGYIPGVIHAVYILIKE 57
>sp|Q9C1W4|PMP3_SCHPO Plasma membrane proteolipid 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pmp3 PE=3 SV=2
Length = 57
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 12 ILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
++ A+ILPPLGVFL+ GC A+ I +LL LGY+PGII+A+Y I K
Sbjct: 11 VIFAIILPPLGVFLERGCGADVIINILLCCLGYVPGIIHALYIILK 56
>sp|Q22702|YCU5_CAEEL UPF0057 membrane protein T23F2.5 OS=Caenorhabditis elegans
GN=T23F2.5 PE=3 SV=1
Length = 57
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 8 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 55
TC DI L A++LPP+GV+L+ GC I +LLTILGYIPGII+A Y I
Sbjct: 4 TCTDIPKFLCALLLPPIGVWLEKGCTYHLAINILLTILGYIPGIIHACYVI 54
>sp|P74805|Y1169_SYNY3 UPF0057 membrane protein ssr1169 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=ssr1169 PE=3 SV=2
Length = 54
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 10 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILG-YIPGIIYAVYAITKK 58
V I+ A++LPPLGVFL+ G +FWI LLLTI G YI G+++A++ I ++
Sbjct: 4 VKIICAILLPPLGVFLQVGIGKDFWINLLLTIFGLYILGLVHAIWVIARE 53
>sp|P0CS18|PMP3_CRYNJ Plasma membrane proteolipid 3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=PMP3 PE=3 SV=1
Length = 57
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 3/53 (5%)
Query: 8 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
TC DI +LA+ILPPLGVFL+ GC A+ I +LLTILGYIPGII+A+Y I K
Sbjct: 4 TCSDIFKIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYIILK 56
>sp|P0CS19|PMP3_CRYNB Plasma membrane proteolipid 3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=PMP3 PE=3
SV=1
Length = 57
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 3/53 (5%)
Query: 8 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57
TC DI +LA+ILPPLGVFL+ GC A+ I +LLTILGYIPGII+A+Y I K
Sbjct: 4 TCSDIFKIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYIILK 56
>sp|P0AE42|YQAE_ECOLI UPF0057 membrane protein YqaE OS=Escherichia coli (strain K12)
GN=yqaE PE=3 SV=1
Length = 52
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 11 DILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 58
I++ +ILPPLGV L G F I +LLT+LGYIPG+I+A + T+
Sbjct: 5 RIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIHAFWVQTRD 52
>sp|P0AE43|YQAE_ECOL6 UPF0057 membrane protein YqaE OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yqaE PE=3 SV=1
Length = 52
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 11 DILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 58
I++ +ILPPLGV L G F I +LLT+LGYIPG+I+A + T+
Sbjct: 5 RIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIHAFWVQTRD 52
>sp|P0AE44|YQAE_ECO57 UPF0057 membrane protein YqaE OS=Escherichia coli O157:H7 GN=yqaE
PE=3 SV=1
Length = 52
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 11 DILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 58
I++ +ILPPLGV L G F I +LLT+LGYIPG+I+A + T+
Sbjct: 5 RIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIHAFWVQTRD 52
>sp|P34655|YOT0_CAEEL UPF0057 membrane protein ZK632.10 OS=Caenorhabditis elegans
GN=ZK632.10 PE=3 SV=2
Length = 80
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 13 LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 58
+LA+ LPP+ V L GC + I +LLT LG IPGII+A Y I K
Sbjct: 8 ILAIFLPPIAVLLDVGCNCDLLINILLTCLGIIPGIIHAWYIILCK 53
>sp|Q9P824|PMP3_CANAX Plasma membrane proteolipid 3 homolog OS=Candida albicans GN=PMP3
PE=3 SV=1
Length = 55
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 58
++ +++++A+ LPP+ VF+K G WI L+L I + P I++A+Y + K
Sbjct: 2 NSEKIIEVIIAIFLPPVAVFMKCGATTPLWINLVLCIFIWFPAILHALYVVLKD 55
>sp|P87284|PMP3_YEAST Plasma membrane proteolipid 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PMP3 PE=1 SV=1
Length = 55
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITKK 58
+A ++I+L++ LPP+ VFL G + + ++LTIL + PG++YA+Y + +
Sbjct: 2 DSAKIINIILSLFLPPVAVFLARGWGTDCIVDIILTILAWFPGMLYALYIVLQD 55
>sp|Q75C38|PMP3_ASHGO Plasma membrane proteolipid 3 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PMP3
PE=3 SV=1
Length = 55
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 55
++ V++++A+ LPP+ VFL G E + LLLTI + PG++YA+Y +
Sbjct: 2 NSTKVVNVIIAIFLPPVAVFLARGWGVECIVDLLLTIFFFFPGMLYALYIV 52
>sp|Q2HAR0|PMP3_CHAGB Plasma membrane proteolipid 3 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=PMP3 PE=3 SV=1
Length = 53
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 12 ILLAVILPPLGVFLKFGCKAE 32
I+ AVILPPLGVFL+ GC ++
Sbjct: 11 IIFAVILPPLGVFLERGCNSD 31
>sp|Q07549|SNA4_YEAST Protein SNA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SNA4 PE=1 SV=1
Length = 140
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 13 LLAVILPPLGVFLKFG-CKAEFWICLLLTILGYIPGIIYAVYAIT 56
++A PP V L+ G C ++F + +LLT+LG++PG+++A Y IT
Sbjct: 17 IVAFFFPPAAVLLRSGPCSSDFLLNVLLTLLGFLPGMLHAFYYIT 61
>sp|Q17638|YAM5_CAEEL UPF0057 membrane protein C04G6.5 OS=Caenorhabditis elegans
GN=C04G6.5 PE=3 SV=1
Length = 59
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 10 VDILLAVILPPLGVFLKFG-CKAEFWICLLLTILGYIPGIIYAVY 53
++++L + LPPL ++ C I ++ +L ++PGI+YAVY
Sbjct: 9 IEVILCIFLPPLAIWWHTKECDINVLIDIIFCLLFWLPGILYAVY 53
>sp|Q20516|YV31_CAEEL UPF0057 membrane protein F47B7.1 OS=Caenorhabditis elegans
GN=F47B7.1 PE=3 SV=1
Length = 59
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 10 VDILLAVILPPLGVFLK-FGCKAEFWICLLLTILGYIPGIIYAVY 53
++++LA+ LPPL +F+ C + ++L ++P +I+A++
Sbjct: 9 IELILAIFLPPLAIFIHGNDCNMHVAVNIILCFFFFVPAVIHALW 53
>sp|O74837|PMP31_SCHPO Plasma membrane proteolipid 31 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pmp31 PE=1 SV=2
Length = 109
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 5 STATCVDILLAVI---LPPLGVFLKFG-CKAEFWICLLLTILGYIPGIIYAVYAITK 57
S T D LL V+ +P + V ++ G C A+F I + L LG IPGII+A+Y + K
Sbjct: 2 SNVTLSDFLLIVLSFFVPFIVVGIRRGFCTADFLINICLCALG-IPGIIHAIYIVIK 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.150 0.485
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,493,501
Number of Sequences: 539616
Number of extensions: 576161
Number of successful extensions: 1515
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1473
Number of HSP's gapped (non-prelim): 42
length of query: 58
length of database: 191,569,459
effective HSP length: 31
effective length of query: 27
effective length of database: 174,841,363
effective search space: 4720716801
effective search space used: 4720716801
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)