Query 035403
Match_columns 58
No_of_seqs 100 out of 647
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0401 Uncharacterized homolo 99.9 4.1E-27 9E-32 134.4 5.7 54 5-58 2-56 (56)
2 KOG1773 Stress responsive prot 99.9 5.2E-27 1.1E-31 136.7 4.3 57 1-58 1-58 (63)
3 PF01679 Pmp3: Proteolipid mem 99.9 2.1E-25 4.6E-30 124.9 4.7 51 7-57 1-51 (51)
4 PF14373 Imm_superinfect: Supe 92.3 0.3 6.4E-06 26.4 3.4 33 20-52 5-42 (43)
5 PF07123 PsbW: Photosystem II 63.2 4 8.6E-05 27.0 1.0 41 17-57 79-125 (138)
6 PF11298 DUF3099: Protein of u 54.5 5.9 0.00013 23.3 0.7 21 8-28 44-64 (73)
7 PLN00082 photosystem II reacti 53.9 7.8 0.00017 22.9 1.1 22 36-57 32-53 (67)
8 PLN00077 photosystem II reacti 49.7 9.4 0.0002 25.0 1.1 43 15-57 66-114 (128)
9 COG4665 FcbT2 TRAP-type mannit 48.0 19 0.00041 24.8 2.4 25 30-54 88-112 (182)
10 PLN00092 photosystem I reactio 45.5 12 0.00027 24.7 1.2 40 18-57 79-124 (137)
11 PF09964 DUF2198: Uncharacteri 40.6 61 0.0013 19.4 3.5 45 11-55 2-50 (74)
12 PF06796 NapE: Periplasmic nit 40.1 48 0.0011 18.7 2.9 31 8-38 19-49 (56)
13 TIGR02230 ATPase_gene1 F0F1-AT 39.3 32 0.00069 21.4 2.3 36 22-57 63-98 (100)
14 PF03376 Adeno_E3B: Adenovirus 34.9 46 0.00099 19.6 2.3 24 18-41 9-32 (67)
15 TIGR02972 TMAO_torE trimethyla 33.7 87 0.0019 17.2 3.4 31 8-38 11-41 (47)
16 TIGR02973 nitrate_rd_NapE peri 33.5 83 0.0018 16.9 3.4 33 6-38 4-36 (42)
17 COG3093 VapI Plasmid maintenan 30.8 57 0.0012 20.5 2.4 19 19-37 52-72 (104)
18 PF05915 DUF872: Eukaryotic pr 29.5 1.2E+02 0.0027 19.0 3.8 25 29-53 72-96 (115)
19 KOG4040 NADH:ubiquinone oxidor 28.4 54 0.0012 22.6 2.2 24 33-56 127-150 (186)
20 COG4897 CsbA Uncharacterized p 27.8 1.5E+02 0.0031 17.9 3.8 46 11-56 3-52 (78)
21 COG3152 Predicted membrane pro 27.0 1.7E+02 0.0037 18.5 5.0 30 9-38 56-87 (125)
22 PF05478 Prominin: Prominin; 26.4 64 0.0014 25.9 2.6 22 32-53 769-790 (806)
23 PF12555 TPPK_C: Thiamine pyro 25.7 1.2E+02 0.0026 16.3 4.6 36 5-40 12-47 (53)
24 COG5605 Predicted small integr 23.9 74 0.0016 20.3 2.1 15 11-25 77-91 (115)
25 PHA00724 hypothetical protein 20.5 2.1E+02 0.0046 17.3 4.0 26 10-40 8-33 (83)
No 1
>COG0401 Uncharacterized homolog of Blt101 [Function unknown]
Probab=99.94 E-value=4.1e-27 Score=134.37 Aligned_cols=54 Identities=52% Similarity=0.939 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHc-CchHHHHHHHHHHHHhhhhhhhhheeeecC
Q 035403 5 STATCVDILLAVILPPLGVFLKFG-CKAEFWICLLLTILGYIPGIIYAVYAITKK 58 (58)
Q Consensus 5 ~~~~~~~~ilai~lPPlaV~~~~G-~~~~~~inllLtllg~iPg~ihA~yii~~~ 58 (58)
+.+|++++++|+|+||++|++++| |++|+|+|++||++||+||++||+|++.|+
T Consensus 2 ~~~d~~~iilaiflPP~~VfL~~G~~~~df~iNiLLtlLg~~PGiiHA~yvi~~~ 56 (56)
T COG0401 2 TLMDFIRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILRD 56 (56)
T ss_pred cHHHHHHHHHHHHcCchhhhhhccCCcHHHHHHHHHHHHHhhhhhHhheEEEEeC
Confidence 678999999999999999999999 579999999999999999999999999986
No 2
>KOG1773 consensus Stress responsive protein [General function prediction only]
Probab=99.93 E-value=5.2e-27 Score=136.65 Aligned_cols=57 Identities=49% Similarity=0.877 Sum_probs=54.5
Q ss_pred CCCCchHHHHHHHHHHhhhhhHHHHHHc-CchHHHHHHHHHHHHhhhhhhhhheeeecC
Q 035403 1 MADGSTATCVDILLAVILPPLGVFLKFG-CKAEFWICLLLTILGYIPGIIYAVYAITKK 58 (58)
Q Consensus 1 m~~~~~~~~~~~ilai~lPPlaV~~~~G-~~~~~~inllLtllg~iPg~ihA~yii~~~ 58 (58)
|+. |++++.++++|+++||+||++++| |++|+++|++||++||+||+|||+|+++++
T Consensus 1 m~~-~~~~~~~iilai~lPP~aV~l~~g~C~~~~~InilL~~L~~iPgiIhA~yii~~~ 58 (63)
T KOG1773|consen 1 MAT-DCDDILLIILAIFLPPLAVFLRRGGCTVDVLINILLTLLGFIPGIIHAIYIIFFR 58 (63)
T ss_pred CCC-cHHHHHHHHHHHHcCchheeeecCCCchhhHHHHHHHHHHHhHHHHhhEEEEEEe
Confidence 677 999999999999999999999998 899999999999999999999999999864
No 3
>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane
Probab=99.92 E-value=2.1e-25 Score=124.85 Aligned_cols=51 Identities=59% Similarity=1.095 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHcCchHHHHHHHHHHHHhhhhhhhhheeeec
Q 035403 7 ATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57 (58)
Q Consensus 7 ~~~~~~ilai~lPPlaV~~~~G~~~~~~inllLtllg~iPg~ihA~yii~~ 57 (58)
+|++++++|+++||+||++++||++|+++|++||++||+||++||+|+++|
T Consensus 1 ~~~~~~ilai~lPPlaV~~~~g~~~~~~inl~Ltl~g~iPg~ihA~y~i~~ 51 (51)
T PF01679_consen 1 MDILLIILAIFLPPLAVFLKKGCSKDFWINLLLTLLGWIPGVIHALYVIYK 51 (51)
T ss_pred CcHHHHHHHHHcccHHHHHHcCCchhhHHHHHHHHHHHHHHHHHeeEEEeC
Confidence 368999999999999999999999999999999999999999999999986
No 4
>PF14373 Imm_superinfect: Superinfection immunity protein
Probab=92.26 E-value=0.3 Score=26.40 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=25.1
Q ss_pred hhHHHHHHc---CchHHHHHHHH--HHHHhhhhhhhhh
Q 035403 20 PLGVFLKFG---CKAEFWICLLL--TILGYIPGIIYAV 52 (58)
Q Consensus 20 PlaV~~~~G---~~~~~~inllL--tllg~iPg~ihA~ 52 (58)
|-.+..+++ ...-+.+|++| |.+||+-+.++|+
T Consensus 5 P~iiA~~r~~~~~~~I~~~Nl~lGWT~iGWv~aLiwA~ 42 (43)
T PF14373_consen 5 PSIIAFRRKHPNKWAIFLLNLLLGWTGIGWVAALIWAL 42 (43)
T ss_pred hHHHHHHcCCCcchhhHhHHHHHHhHHHHHHHHHHHhc
Confidence 444455554 35678999999 9999999999885
No 5
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=63.18 E-value=4 Score=27.02 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=25.9
Q ss_pred hhhhhHHHHHH----cCchHHH--HHHHHHHHHhhhhhhhhheeeec
Q 035403 17 ILPPLGVFLKF----GCKAEFW--ICLLLTILGYIPGIIYAVYAITK 57 (58)
Q Consensus 17 ~lPPlaV~~~~----G~~~~~~--inllLtllg~iPg~ihA~yii~~ 57 (58)
-.|=+|.-..| |-|..+= =|++-+++.-++|.||++|.+++
T Consensus 79 a~PA~ALVDeRlsteGTGL~lGlsn~~LgwIL~gVf~lIWslY~~~~ 125 (138)
T PF07123_consen 79 ASPALALVDERLSTEGTGLPLGLSNNLLGWILLGVFGLIWSLYFVYT 125 (138)
T ss_pred cCcHHHHHHHHhcCCCccccccccCchhHHHHHHHHHHHHHHHHhhc
Confidence 45666655543 2222222 24555777779999999998875
No 6
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=54.46 E-value=5.9 Score=23.35 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHc
Q 035403 8 TCVDILLAVILPPLGVFLKFG 28 (58)
Q Consensus 8 ~~~~~ilai~lPPlaV~~~~G 28 (58)
.+..+..|+.+|++||.+..+
T Consensus 44 a~~~~~~av~LPwvAVviAN~ 64 (73)
T PF11298_consen 44 AWAIIVGAVPLPWVAVVIANA 64 (73)
T ss_pred HHHHHHHhcccchhheeeccC
Confidence 355677889999999988654
No 7
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=53.86 E-value=7.8 Score=22.87 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=17.0
Q ss_pred HHHHHHHHhhhhhhhhheeeec
Q 035403 36 CLLLTILGYIPGIIYAVYAITK 57 (58)
Q Consensus 36 nllLtllg~iPg~ihA~yii~~ 57 (58)
|.+-+++.-+|+.|+++|.+++
T Consensus 32 ~~LgwIL~gvf~liw~ly~~~~ 53 (67)
T PLN00082 32 GKLTWILVGVTALIWALYFSYS 53 (67)
T ss_pred chhhhHHHHHHHHHHHHHhhee
Confidence 3444667779999999998875
No 8
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=49.68 E-value=9.4 Score=24.99 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=26.7
Q ss_pred HHhhhhhHHHHHH----cCchHHH--HHHHHHHHHhhhhhhhhheeeec
Q 035403 15 AVILPPLGVFLKF----GCKAEFW--ICLLLTILGYIPGIIYAVYAITK 57 (58)
Q Consensus 15 ai~lPPlaV~~~~----G~~~~~~--inllLtllg~iPg~ihA~yii~~ 57 (58)
+.-.|-+|..-.| |-|..+= =|++-+++.-+++.||++|.+++
T Consensus 66 a~a~PA~AlVDeRlsteGtGl~lGlsn~~LgwIL~gVf~liw~ly~~~~ 114 (128)
T PLN00077 66 AYAHPAFALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTTYT 114 (128)
T ss_pred hccccHHHHHhHhhcCCCccccccccCchhhHHHHhHHHHHHHHHhhee
Confidence 3456766665543 2222222 24555777779999999998875
No 9
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.97 E-value=19 Score=24.85 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhee
Q 035403 30 KAEFWICLLLTILGYIPGIIYAVYA 54 (58)
Q Consensus 30 ~~~~~inllLtllg~iPg~ihA~yi 54 (58)
..+.|++++.|+++.+|+.+.-+|.
T Consensus 88 R~qa~vDllGtifFLlPfc~l~iy~ 112 (182)
T COG4665 88 RTQAWVDLLGTIFFLLPFCLLVIYL 112 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999877765
No 10
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=45.54 E-value=12 Score=24.70 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=25.3
Q ss_pred hhhhHHHHHH----cCchHHHH--HHHHHHHHhhhhhhhhheeeec
Q 035403 18 LPPLGVFLKF----GCKAEFWI--CLLLTILGYIPGIIYAVYAITK 57 (58)
Q Consensus 18 lPPlaV~~~~----G~~~~~~i--nllLtllg~iPg~ihA~yii~~ 57 (58)
.|-+|....+ |-|..+=+ |.+-+++.-+++.||++|.+++
T Consensus 79 ~PA~AlVDeRlsteGTGlplGlsn~~LgwIL~gVf~lIWslYf~~~ 124 (137)
T PLN00092 79 SPAMALVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWSLYFVYT 124 (137)
T ss_pred CcHHHHHHHhhcCCCccccccccCcchhhHHHhHHHHHHHHHheee
Confidence 6666655543 22222222 3455777779999999999875
No 11
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=40.58 E-value=61 Score=19.36 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=31.2
Q ss_pred HHHHHHhhhhhHHHHHHcCchHHHHHHHHHHHHh----hhhhhhhheee
Q 035403 11 DILLAVILPPLGVFLKFGCKAEFWICLLLTILGY----IPGIIYAVYAI 55 (58)
Q Consensus 11 ~~ilai~lPPlaV~~~~G~~~~~~inllLtllg~----iPg~ihA~yii 55 (58)
.+++|.++|=+-|.+-.-.+.+-++-.+||.--- .-|.-|..|++
T Consensus 2 ~~~~Al~~P~lLVvlFtrVT~n~~vg~~lt~~Li~ASvykGyt~~~~ii 50 (74)
T PF09964_consen 2 KYLLALFFPCLLVVLFTRVTYNHYVGTILTVALIAASVYKGYTHTWWII 50 (74)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 4688999999998886667888888888875432 34444444443
No 12
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=40.06 E-value=48 Score=18.74 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHcCchHHHHHHH
Q 035403 8 TCVDILLAVILPPLGVFLKFGCKAEFWICLL 38 (58)
Q Consensus 8 ~~~~~ilai~lPPlaV~~~~G~~~~~~inll 38 (58)
+.+..+..+++|=++|..-.|.|.-.|..=+
T Consensus 19 ~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 19 KAFLFLAVVLFPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566678889999999998888988887655
No 13
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=39.32 E-value=32 Score=21.35 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=26.5
Q ss_pred HHHHHHcCchHHHHHHHHHHHHhhhhhhhhheeeec
Q 035403 22 GVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57 (58)
Q Consensus 22 aV~~~~G~~~~~~inllLtllg~iPg~ihA~yii~~ 57 (58)
+.++-+-.+.+.+..+.+.++|..-|...|++.+.|
T Consensus 63 G~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 63 GIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444456677888899999999999888776654
No 14
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=34.90 E-value=46 Score=19.63 Aligned_cols=24 Identities=33% Similarity=0.694 Sum_probs=15.2
Q ss_pred hhhhHHHHHHcCchHHHHHHHHHH
Q 035403 18 LPPLGVFLKFGCKAEFWICLLLTI 41 (58)
Q Consensus 18 lPPlaV~~~~G~~~~~~inllLtl 41 (58)
+||.+|++..++-.-..++-+.|+
T Consensus 9 l~pf~vYlif~fv~c~~iCSi~~~ 32 (67)
T PF03376_consen 9 LPPFAVYLIFAFVTCTCICSIVCF 32 (67)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 699999998775333344444443
No 15
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=33.70 E-value=87 Score=17.19 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHcCchHHHHHHH
Q 035403 8 TCVDILLAVILPPLGVFLKFGCKAEFWICLL 38 (58)
Q Consensus 8 ~~~~~ilai~lPPlaV~~~~G~~~~~~inll 38 (58)
+....+..+++|=++|..-.|.|.-.|..=+
T Consensus 11 ~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~ 41 (47)
T TIGR02972 11 KALGFIIVVLFPILSVAGIGGYGFIIWMIQA 41 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999998888988887655
No 16
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=33.47 E-value=83 Score=16.89 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHcCchHHHHHHH
Q 035403 6 TATCVDILLAVILPPLGVFLKFGCKAEFWICLL 38 (58)
Q Consensus 6 ~~~~~~~ilai~lPPlaV~~~~G~~~~~~inll 38 (58)
.-+....+..+++|=++|..-.|.|.-.|..=+
T Consensus 4 El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 4 ELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999998888988887655
No 17
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=30.78 E-value=57 Score=20.53 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=13.3
Q ss_pred hhhHHHHHH--cCchHHHHHH
Q 035403 19 PPLGVFLKF--GCKAEFWICL 37 (58)
Q Consensus 19 PPlaV~~~~--G~~~~~~inl 37 (58)
|..|+=+.+ |-+.|||+|+
T Consensus 52 ~dmAlrL~k~fGtspefWlNl 72 (104)
T COG3093 52 ADMALRLAKVFGTSPEFWLNL 72 (104)
T ss_pred HHHHHHHHHHhCCCHHHHHHH
Confidence 445544444 7799999997
No 18
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=29.52 E-value=1.2e+02 Score=18.95 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHHHhhhhhhhhhe
Q 035403 29 CKAEFWICLLLTILGYIPGIIYAVY 53 (58)
Q Consensus 29 ~~~~~~inllLtllg~iPg~ihA~y 53 (58)
-+.+.+.=+++.++.++||.-|-..
T Consensus 72 ~~~~~~~llilG~L~fIPG~Y~~~i 96 (115)
T PF05915_consen 72 DRDRGWALLILGILCFIPGFYHTRI 96 (115)
T ss_pred CCcccchHHHHHHHHHhccHHHHHH
Confidence 3567788899999999999887653
No 19
>KOG4040 consensus NADH:ubiquinone oxidoreductase, NDUFB8/ASHI subunit [Energy production and conversion]
Probab=28.45 E-value=54 Score=22.64 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhhhhhhheeee
Q 035403 33 FWICLLLTILGYIPGIIYAVYAIT 56 (58)
Q Consensus 33 ~~inllLtllg~iPg~ihA~yii~ 56 (58)
-|-.++.|++|.+|+.+.++|+.-
T Consensus 127 ~w~~~~mcl~g~~~~~l~~~y~~d 150 (186)
T KOG4040|consen 127 TWNSIVMCLRGLVPMALLAWYFTD 150 (186)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcc
Confidence 467788899999999999998753
No 20
>COG4897 CsbA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.82 E-value=1.5e+02 Score=17.94 Aligned_cols=46 Identities=26% Similarity=0.308 Sum_probs=32.3
Q ss_pred HHHHHHhhhhhHHHHHHcCchHHHHHHHHHHHH----hhhhhhhhheeee
Q 035403 11 DILLAVILPPLGVFLKFGCKAEFWICLLLTILG----YIPGIIYAVYAIT 56 (58)
Q Consensus 11 ~~ilai~lPPlaV~~~~G~~~~~~inllLtllg----~iPg~ihA~yii~ 56 (58)
.++-|.|+|=+-|.+-.-.+..=++-++||... ..-|.-|..|++.
T Consensus 3 ~~~sAlfFPc~LVvLF~riT~n~yVa~vLt~vLi~AS~~kgYt~~~wii~ 52 (78)
T COG4897 3 QIISALFFPCLLVVLFARITYNRYVALVLTVVLIAASAKKGYTSSFWIIT 52 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeeee
Confidence 457789999998877655666667777776543 3556667777764
No 21
>COG3152 Predicted membrane protein [Function unknown]
Probab=26.98 E-value=1.7e+02 Score=18.53 Aligned_cols=30 Identities=30% Similarity=0.415 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhhhHHHHHH--cCchHHHHHHH
Q 035403 9 CVDILLAVILPPLGVFLKF--GCKAEFWICLL 38 (58)
Q Consensus 9 ~~~~ilai~lPPlaV~~~~--G~~~~~~inll 38 (58)
...+.++.++|=+++..|| +.++.-|..++
T Consensus 56 ~~l~~la~~~p~lal~vrRLHD~g~sgw~~Ll 87 (125)
T COG3152 56 TALYLLALFLPTLALTVRRLHDRGRSGWWALL 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3567889999999999987 44554444433
No 22
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=26.40 E-value=64 Score=25.86 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhe
Q 035403 32 EFWICLLLTILGYIPGIIYAVY 53 (58)
Q Consensus 32 ~~~inllLtllg~iPg~ihA~y 53 (58)
-||..+.++.+.++|++|.|.-
T Consensus 769 ~fWf~l~~c~~~liP~ii~avk 790 (806)
T PF05478_consen 769 GFWFGLGWCTLFLIPSIIFAVK 790 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999998864
No 23
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=25.66 E-value=1.2e+02 Score=16.35 Aligned_cols=36 Identities=19% Similarity=0.037 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHhhhhhHHHHHHcCchHHHHHHHHH
Q 035403 5 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLT 40 (58)
Q Consensus 5 ~~~~~~~~ilai~lPPlaV~~~~G~~~~~~inllLt 40 (58)
+...+...++|.++|=.++....+.+.+++=++..+
T Consensus 12 s~~~~~~lvlaaLvav~v~l~~s~~g~~~~~~l~~~ 47 (53)
T PF12555_consen 12 SGWALALLVLAALVAVAVALLISPAGQSFLDLLADT 47 (53)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 455788889999999888888888888877776654
No 24
>COG5605 Predicted small integral membrane protein [Function unknown]
Probab=23.95 E-value=74 Score=20.28 Aligned_cols=15 Identities=47% Similarity=0.884 Sum_probs=11.6
Q ss_pred HHHHHHhhhhhHHHH
Q 035403 11 DILLAVILPPLGVFL 25 (58)
Q Consensus 11 ~~ilai~lPPlaV~~ 25 (58)
..+-|+++||+-|..
T Consensus 77 al~yaiilppllvlv 91 (115)
T COG5605 77 ALVYAIILPPLLVLV 91 (115)
T ss_pred HHHHHHHhhHHHHHH
Confidence 346789999998765
No 25
>PHA00724 hypothetical protein
Probab=20.45 E-value=2.1e+02 Score=17.26 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=17.6
Q ss_pred HHHHHHHhhhhhHHHHHHcCchHHHHHHHHH
Q 035403 10 VDILLAVILPPLGVFLKFGCKAEFWICLLLT 40 (58)
Q Consensus 10 ~~~ilai~lPPlaV~~~~G~~~~~~inllLt 40 (58)
..+++++++|-++...+ ...+|+.=+
T Consensus 8 viyilgil~p~lgli~r-----nyl~nlmgf 33 (83)
T PHA00724 8 VIYILGILIPLLGLIVR-----NYLVNLMGF 33 (83)
T ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 35788999998886554 556665433
Done!