Query 035403
Match_columns 58
No_of_seqs 100 out of 647
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q0o_C Probable transcriptiona 11.4 98 0.0033 18.8 1.3 18 31-48 84-101 (107)
2 2hjd_A Quorum-sensing antiacti 11.0 84 0.0029 19.0 0.9 18 31-48 82-99 (102)
3 1b75_A Protein (50S ribosomal 11.0 27 0.00092 19.8 -1.3 9 43-51 24-32 (94)
4 1rfy_A TRAM protein;, transcri 10.9 85 0.0029 19.0 0.9 18 31-48 82-99 (102)
5 1wfw_A Kalirin-9A; SH3 domain, 10.4 42 0.0014 19.3 -0.6 7 43-49 58-64 (74)
6 4dgl_A Casein kinase II subuni 9.3 45 0.0015 22.4 -0.9 13 45-57 79-91 (215)
7 1qf8_A Casein kinase II; casei 8.7 49 0.0017 21.5 -0.9 13 45-57 79-91 (182)
8 3qrx_B Melittin; calcium-bindi 7.4 2.3E+02 0.008 13.0 1.5 18 11-28 6-23 (26)
9 2ki9_A Cannabinoid receptor 2; 7.4 1.5E+02 0.005 13.1 0.7 20 33-52 8-27 (33)
10 4dkl_A MU-type opioid receptor 5.5 4.6E+02 0.016 16.7 2.7 23 31-53 383-405 (464)
No 1
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=11.45 E-value=98 Score=18.82 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHhhhhh
Q 035403 31 AEFWICLLLTILGYIPGI 48 (58)
Q Consensus 31 ~~~~inllLtllg~iPg~ 48 (58)
.+.-+|-++-.|||+|-+
T Consensus 84 Qq~~lstLid~LGyvPkV 101 (107)
T 2q0o_C 84 QQEELSDILDALGFVPDV 101 (107)
T ss_dssp HHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 467899999999999954
No 2
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=11.05 E-value=84 Score=18.98 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHhhhhh
Q 035403 31 AEFWICLLLTILGYIPGI 48 (58)
Q Consensus 31 ~~~~inllLtllg~iPg~ 48 (58)
.+.-+|-++-.|||+|-+
T Consensus 82 Qq~~lstli~~LGyvP~v 99 (102)
T 2hjd_A 82 QMSAVNTLVGLLGFIPKV 99 (102)
T ss_dssp HHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 456789999999999954
No 3
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=11.02 E-value=27 Score=19.84 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=6.1
Q ss_pred Hhhhhhhhh
Q 035403 43 GYIPGIIYA 51 (58)
Q Consensus 43 g~iPg~ihA 51 (58)
|.+||++|.
T Consensus 24 G~vPaVvYG 32 (94)
T 1b75_A 24 NKFPAIIYG 32 (94)
T ss_dssp TBCCEEEEC
T ss_pred CCceEEEEC
Confidence 567877763
No 4
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=10.95 E-value=85 Score=18.95 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhhhhh
Q 035403 31 AEFWICLLLTILGYIPGI 48 (58)
Q Consensus 31 ~~~~inllLtllg~iPg~ 48 (58)
.+.-+|-++-.|||+|-+
T Consensus 82 Qq~~lstli~~LGyvP~v 99 (102)
T 1rfy_A 82 QMSALNTLISILGFIPKV 99 (102)
T ss_dssp HHHHHHHHHHHHTSCCC-
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 456789999999999954
No 5
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=10.41 E-value=42 Score=19.29 Aligned_cols=7 Identities=57% Similarity=1.436 Sum_probs=5.3
Q ss_pred Hhhhhhh
Q 035403 43 GYIPGII 49 (58)
Q Consensus 43 g~iPg~i 49 (58)
||+||.+
T Consensus 58 gWvPG~v 64 (74)
T 1wfw_A 58 GWVPGSI 64 (74)
T ss_dssp EEEEGGG
T ss_pred CcccccE
Confidence 6888876
No 6
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=9.34 E-value=45 Score=22.37 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=10.2
Q ss_pred hhhhhhhheeeec
Q 035403 45 IPGIIYAVYAITK 57 (58)
Q Consensus 45 iPg~ihA~yii~~ 57 (58)
+=|+|||=||+++
T Consensus 79 LYGLIHARYIlT~ 91 (215)
T 4dgl_A 79 LYGLIHARYILTN 91 (215)
T ss_dssp HHHHHHHHHTTSH
T ss_pred HhhhhhHhheecH
Confidence 5589999998764
No 7
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=8.66 E-value=49 Score=21.48 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=9.9
Q ss_pred hhhhhhhheeeec
Q 035403 45 IPGIIYAVYAITK 57 (58)
Q Consensus 45 iPg~ihA~yii~~ 57 (58)
+=|+|||=||+++
T Consensus 79 LYGLIHaRyIlT~ 91 (182)
T 1qf8_A 79 LYGLIHARYILTN 91 (182)
T ss_dssp HHHHHHHHHTTSH
T ss_pred HhchhhhhhcccH
Confidence 5589999888754
No 8
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=7.39 E-value=2.3e+02 Score=13.00 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=13.5
Q ss_pred HHHHHHhhhhhHHHHHHc
Q 035403 11 DILLAVILPPLGVFLKFG 28 (58)
Q Consensus 11 ~~ilai~lPPlaV~~~~G 28 (58)
+=+++--+||+.-|+++.
T Consensus 6 LKVLa~~LP~liSWiK~k 23 (26)
T 3qrx_B 6 LKVLTTGLPALISWIKRK 23 (26)
T ss_pred HHHHHccchHHHHHHHHH
Confidence 345778899999888753
No 9
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=7.35 E-value=1.5e+02 Score=13.05 Aligned_cols=20 Identities=10% Similarity=0.310 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhhhhhhh
Q 035403 33 FWICLLLTILGYIPGIIYAV 52 (58)
Q Consensus 33 ~~inllLtllg~iPg~ihA~ 52 (58)
..+-+...++.|.|-.+..+
T Consensus 8 l~~vv~~F~icW~P~~i~~~ 27 (33)
T 2ki9_A 8 LGLVLAVLLICWFPVLALMA 27 (33)
T ss_dssp HHHHHHHHTTTSSHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34445556777888665443
No 10
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=5.52 E-value=4.6e+02 Score=16.68 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhe
Q 035403 31 AEFWICLLLTILGYIPGIIYAVY 53 (58)
Q Consensus 31 ~~~~inllLtllg~iPg~ihA~y 53 (58)
+-+.+-++..++.|.|-.+..++
T Consensus 383 k~l~~v~~~F~icw~P~~i~~l~ 405 (464)
T 4dkl_A 383 RMVLVVVAVFIVCWTPIHIYVII 405 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Confidence 44566666788889997765543
Done!