Query 035403
Match_columns 58
No_of_seqs 100 out of 647
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 03:47:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035403.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035403hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dfup_ b.53.1.1 (P:) Ribosoma 16.3 6.4 0.00046 21.2 -1.5 9 43-51 24-32 (94)
2 d1rfya_ a.2.13.1 (A:) Transcri 14.6 27 0.0019 19.3 0.9 13 34-46 76-88 (89)
3 d1lnsa1 a.40.2.1 (A:1-145) X-P 9.6 74 0.0054 18.4 1.9 21 28-48 68-88 (145)
4 d1gtra2 c.26.1.1 (A:8-338) Glu 8.0 1E+02 0.0075 19.1 2.2 27 20-47 285-311 (331)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 7.8 1.2E+02 0.0087 13.5 2.4 16 13-28 18-33 (33)
6 d1oedc_ f.36.1.1 (C:) Acetylch 7.7 2E+02 0.015 16.1 4.0 27 11-42 18-44 (260)
7 d2iuba2 f.17.3.1 (A:286-349) M 7.4 1.4E+02 0.01 14.1 2.2 23 6-28 5-27 (64)
8 d1qf8a_ g.41.4.1 (A:) Casein k 6.6 32 0.0024 20.6 -0.9 13 45-57 73-85 (173)
9 d1q90r_ f.23.12.1 (R:) ISP sub 5.4 82 0.006 14.7 0.4 7 14-20 33-39 (39)
10 d2icta1 a.35.1.3 (A:8-94) Anti 5.3 1.4E+02 0.01 14.9 1.4 10 28-37 54-63 (87)
No 1
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=16.34 E-value=6.4 Score=21.24 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=6.4
Q ss_pred Hhhhhhhhh
Q 035403 43 GYIPGIIYA 51 (58)
Q Consensus 43 g~iPg~ihA 51 (58)
|++||++|.
T Consensus 24 G~vPaViYG 32 (94)
T d1dfup_ 24 NKFPAIIYG 32 (94)
T ss_dssp TEEEEEEEC
T ss_pred CCccEEEEC
Confidence 678888763
No 2
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=14.64 E-value=27 Score=19.26 Aligned_cols=13 Identities=46% Similarity=0.915 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhh
Q 035403 34 WICLLLTILGYIP 46 (58)
Q Consensus 34 ~inllLtllg~iP 46 (58)
-+|-++.++|++|
T Consensus 76 Av~tLi~iLG~iP 88 (89)
T d1rfya_ 76 ALNTLISILGFIP 88 (89)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHhccCC
Confidence 4678888888887
No 3
>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=9.61 E-value=74 Score=18.42 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=18.7
Q ss_pred cCchHHHHHHHHHHHHhhhhh
Q 035403 28 GCKAEFWICLLLTILGYIPGI 48 (58)
Q Consensus 28 G~~~~~~inllLtllg~iPg~ 48 (58)
..+.+.+-|+.|=++|+.|++
T Consensus 68 ~lt~~vFY~VALQLLgF~~~~ 88 (145)
T d1lnsa1 68 ELDWEIFWNIALQLLDFVPNF 88 (145)
T ss_dssp CCCHHHHHHHHHHHTTCCBTT
T ss_pred cCCHHHHHHHHHHHcCCcccc
Confidence 368999999999999998875
No 4
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=8.04 E-value=1e+02 Score=19.11 Aligned_cols=27 Identities=11% Similarity=0.002 Sum_probs=20.5
Q ss_pred hhHHHHHHcCchHHHHHHHHHHHHhhhh
Q 035403 20 PLGVFLKFGCKAEFWICLLLTILGYIPG 47 (58)
Q Consensus 20 PlaV~~~~G~~~~~~inllLtllg~iPg 47 (58)
-+.-+-++|...+-+.|.+. .+||=|+
T Consensus 285 sl~~lr~~G~~peai~nyla-~LGws~~ 311 (331)
T d1gtra2 285 TISGLRRRGYTAASIREFCK-RIGVTKQ 311 (331)
T ss_dssp BHHHHHHHTCCHHHHHHHHH-HHCCCSS
T ss_pred cHHHHHHCCCCHHHHHHHHH-HhCCCCC
Confidence 34445556999999999988 8999664
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=7.80 E-value=1.2e+02 Score=13.49 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=7.4
Q ss_pred HHHHhhhhhHHHHHHc
Q 035403 13 LLAVILPPLGVFLKFG 28 (58)
Q Consensus 13 ilai~lPPlaV~~~~G 28 (58)
|+-+-+--+|||+.+|
T Consensus 18 ilvfw~gv~avf~arg 33 (33)
T d1xmec1 18 ILVFWLGVYAVFFARG 33 (33)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccC
Confidence 3344444455555443
No 6
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.68 E-value=2e+02 Score=16.12 Aligned_cols=27 Identities=33% Similarity=0.213 Sum_probs=14.1
Q ss_pred HHHHHHhhhhhHHHHHHcCchHHHHHHHHHHH
Q 035403 11 DILLAVILPPLGVFLKFGCKAEFWICLLLTIL 42 (58)
Q Consensus 11 ~~ilai~lPPlaV~~~~G~~~~~~inllLtll 42 (58)
+.++++.+||= .|-.-.+-++++|++.
T Consensus 18 l~~~~f~lp~~-----~~~r~~l~it~lLs~~ 44 (260)
T d1oedc_ 18 LASLAFYLPAE-----SGEKMSTAISVLLAQA 44 (260)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred HHHHHeeeCCC-----CCCcEEeeHHHHHHHH
Confidence 33556666663 2444445555565443
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.45 E-value=1.4e+02 Score=14.07 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHc
Q 035403 6 TATCVDILLAVILPPLGVFLKFG 28 (58)
Q Consensus 6 ~~~~~~~ilai~lPPlaV~~~~G 28 (58)
..+.+.++-++++||-.+.--.|
T Consensus 5 ~mk~lT~it~iflP~t~i~gifG 27 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYG 27 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 34566777888888877644334
No 8
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.65 E-value=32 Score=20.57 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=9.8
Q ss_pred hhhhhhhheeeec
Q 035403 45 IPGIIYAVYAITK 57 (58)
Q Consensus 45 iPg~ihA~yii~~ 57 (58)
+=|+|||=|+++.
T Consensus 73 LYGLIHaRyI~T~ 85 (173)
T d1qf8a_ 73 LYGLIHARYILTN 85 (173)
T ss_dssp HHHHHHHHHTTSH
T ss_pred HHHHhhhheeecH
Confidence 4589999888753
No 9
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.38 E-value=82 Score=14.70 Aligned_cols=7 Identities=43% Similarity=0.766 Sum_probs=0.0
Q ss_pred HHHhhhh
Q 035403 14 LAVILPP 20 (58)
Q Consensus 14 lai~lPP 20 (58)
..+|.||
T Consensus 33 ~~fFvPP 39 (39)
T d1q90r_ 33 GAFFVPP 39 (39)
T ss_dssp HHHHSCC
T ss_pred eEEecCC
No 10
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=5.30 E-value=1.4e+02 Score=14.86 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=0.0
Q ss_pred cCchHHHHHH
Q 035403 28 GCKAEFWICL 37 (58)
Q Consensus 28 G~~~~~~inl 37 (58)
|.+.|+|+|+
T Consensus 54 gvs~~~~L~l 63 (87)
T d2icta1 54 GSSPQMWLNL 63 (87)
T ss_dssp CSCHHHHHHH
T ss_pred CcCHHHHHhh
Done!