Query 035404
Match_columns 53
No_of_seqs 32 out of 34
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 03:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gel_A Putative GRAM negative 64.5 1.8 6.3E-05 28.1 0.6 38 3-40 63-101 (231)
2 3r6m_A YEAZ, resuscitation pro 59.9 2.5 8.6E-05 27.8 0.6 36 4-39 65-101 (213)
3 1zla_K Latent nuclear antigen; 52.4 1.4 4.9E-05 21.8 -1.2 21 1-22 1-23 (26)
4 2a6a_A Hypothetical protein TM 49.0 6.1 0.00021 25.8 1.1 36 4-39 75-111 (218)
5 3cdw_H Protein 3B, VPG; RNA-de 48.7 5 0.00017 19.7 0.5 7 6-12 1-7 (26)
6 2jq5_A SEC-C motif; structural 32.0 16 0.00053 22.7 0.9 14 15-28 31-44 (128)
7 4f4l_A ION transport protein; 26.5 14 0.00047 21.6 0.0 11 43-53 102-112 (112)
8 1qf8_A Casein kinase II; casei 24.5 26 0.00089 23.1 1.0 15 25-39 76-90 (182)
9 2i9w_A Hypothetical protein; c 24.4 26 0.00088 23.2 1.0 14 15-28 56-69 (184)
10 4dgl_A Casein kinase II subuni 21.3 44 0.0015 22.7 1.7 16 25-40 76-91 (215)
No 1
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=64.51 E-value=1.8 Score=28.11 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=31.0
Q ss_pred CCCCCCCChhHHHHHHHHhhhhhhh-hhhhHHHHHHHHh
Q 035404 3 PPPGPYSGTSTLALVARASAFTFGV-VYGNMKLKILKMK 40 (53)
Q Consensus 3 ~~~~~ysgtSt~anV~R~SAl~~Gv-vYG~~h~~~Lka~ 40 (53)
-.||+|.|.-.++.++|-.|+++++ ++|.-|+..+-..
T Consensus 63 ~GPGsftglRig~~~ak~la~~~~~Pl~~V~~l~a~a~~ 101 (231)
T 2gel_A 63 RGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQG 101 (231)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTTTCCEEEECHHHHHHHH
T ss_pred cCCChhHhHHHHHHHHHHHHHHcCCCEEEeccHHHHHHH
Confidence 3589998888888889999988888 8898888877543
No 2
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=59.87 E-value=2.5 Score=27.76 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhh-hhhhHHHHHHHH
Q 035404 4 PPGPYSGTSTLALVARASAFTFGV-VYGNMKLKILKM 39 (53)
Q Consensus 4 ~~~~ysgtSt~anV~R~SAl~~Gv-vYG~~h~~~Lka 39 (53)
-||+|.|--.++-++|--|+++++ ++|.-|+..+-.
T Consensus 65 GPGsfTglRig~~~AkgLa~~~~iPl~gVstL~a~a~ 101 (213)
T 3r6m_A 65 GPGSFTGVRIGIGIAQGLAFGAELPMIGVSTLAAMAQ 101 (213)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCCCEEEEcCHHHHHH
Confidence 489999999999999999999988 888888877654
No 3
>1zla_K Latent nuclear antigen; latency associated nuclear antigen (LANA), kaposi'S sarcoma herpes virus (KSHV), nucleosome core particle, chromatin; 2.90A {Xenopus laevis}
Probab=52.35 E-value=1.4 Score=21.75 Aligned_cols=21 Identities=57% Similarity=0.676 Sum_probs=15.6
Q ss_pred CCCCCC--CCCChhHHHHHHHHhh
Q 035404 1 MAPPPG--PYSGTSTLALVARASA 22 (53)
Q Consensus 1 m~~~~~--~ysgtSt~anV~R~SA 22 (53)
|+ ||| .-||-||++-..|-|.
T Consensus 1 ma-ppgmrlrsgrstgapltrgs~ 23 (26)
T 1zla_K 1 MA-PPGMRLRSGRSTGAPLTRGSX 23 (26)
T ss_pred CC-CCcceeecCcccCCccccccc
Confidence 45 677 7899999887777554
No 4
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=49.01 E-value=6.1 Score=25.78 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=30.5
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhh-hhhhHHHHHHHH
Q 035404 4 PPGPYSGTSTLALVARASAFTFGV-VYGNMKLKILKM 39 (53)
Q Consensus 4 ~~~~ysgtSt~anV~R~SAl~~Gv-vYG~~h~~~Lka 39 (53)
.||+|.|.-.++-++|-.|+++|+ ++|.-|+..+-.
T Consensus 75 GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~l~a~a~ 111 (218)
T 2a6a_A 75 GPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAK 111 (218)
T ss_dssp CSSCHHHHHHHHHHHHHHHGGGTCCEEEECHHHHHHH
T ss_pred CCCchHhHHHHHHHHHHHHHHcCCCEEEeCcHHHHHh
Confidence 589999999999999999999998 688877776644
No 5
>3cdw_H Protein 3B, VPG; RNA-dependent RNA polymerase, protein primer vizier viral enzymes involved in replication, transferase-V protein complex; 2.50A {Coxsackievirus B3} PDB: 2bbl_A 2bbp_A
Probab=48.69 E-value=5 Score=19.72 Aligned_cols=7 Identities=43% Similarity=1.104 Sum_probs=5.6
Q ss_pred CCCCChh
Q 035404 6 GPYSGTS 12 (53)
Q Consensus 6 ~~ysgtS 12 (53)
|||||-+
T Consensus 1 G~YsG~p 7 (26)
T 3cdw_H 1 GAYTGVP 7 (26)
T ss_pred CCccCCC
Confidence 7899965
No 6
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=31.96 E-value=16 Score=22.67 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=11.4
Q ss_pred HHHHHHhhhhhhhh
Q 035404 15 ALVARASAFTFGVV 28 (53)
Q Consensus 15 anV~R~SAl~~Gvv 28 (53)
..=.|||||+.|.+
T Consensus 31 LMRSRYsAyv~~~~ 44 (128)
T 2jq5_A 31 LMRSRYAAYALKDF 44 (128)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHhhhceeeecCCc
Confidence 45689999999973
No 7
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=26.52 E-value=14 Score=21.58 Aligned_cols=11 Identities=18% Similarity=0.447 Sum_probs=0.0
Q ss_pred hhHHHHHhhcC
Q 035404 43 THSKAEAKAHH 53 (53)
Q Consensus 43 ~~k~~~e~~~h 53 (53)
+++++++.+||
T Consensus 102 ~~~~~~~~~~h 112 (112)
T 4f4l_A 102 EQEEEAKTGHH 112 (112)
T ss_dssp -----------
T ss_pred HHHHHHHHhCc
Confidence 33444444565
No 8
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=24.48 E-value=26 Score=23.07 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=12.0
Q ss_pred hhhhhhhHHHHHHHH
Q 035404 25 FGVVYGNMKLKILKM 39 (53)
Q Consensus 25 ~GvvYG~~h~~~Lka 39 (53)
+-.+||.+|.|+|-.
T Consensus 76 a~~LYGLIHaRyIlT 90 (182)
T 1qf8_A 76 AEMLYGLIHARYILT 90 (182)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHhchhhhhhccc
Confidence 456899999998743
No 9
>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1
Probab=24.41 E-value=26 Score=23.22 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhhhh
Q 035404 15 ALVARASAFTFGVV 28 (53)
Q Consensus 15 anV~R~SAl~~Gvv 28 (53)
..=.|||||+.|-+
T Consensus 56 LMRSRYSAfvl~~~ 69 (184)
T 2i9w_A 56 LMRTRYSAFVLVKP 69 (184)
T ss_dssp HHHHHHHHHHHTCH
T ss_pred HHHHhHHHHHcccH
Confidence 45689999999964
No 10
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=21.29 E-value=44 Score=22.68 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=12.7
Q ss_pred hhhhhhhHHHHHHHHh
Q 035404 25 FGVVYGNMKLKILKMK 40 (53)
Q Consensus 25 ~GvvYG~~h~~~Lka~ 40 (53)
+=.+||.||.|+|-..
T Consensus 76 A~~LYGLIHARYIlT~ 91 (215)
T 4dgl_A 76 AEMLYGLIHARYILTN 91 (215)
T ss_dssp HHHHHHHHHHHHTTSH
T ss_pred HHHHhhhhhHhheecH
Confidence 4578999999997643
Done!