Query 035404
Match_columns 53
No_of_seqs 32 out of 34
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 03:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035404.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035404hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l8na2 d.92.2.2 (A:4-142) alp 58.8 1.9 0.00014 24.6 1.4 14 25-38 109-122 (139)
2 d1okja1 c.55.1.9 (A:1-106) Hyp 56.7 1.8 0.00013 23.8 0.9 35 4-38 63-98 (106)
3 d1h41a2 d.92.2.2 (A:5-151) alp 53.4 2.7 0.00019 24.3 1.4 15 25-39 118-132 (147)
4 d2a6aa1 c.55.1.9 (A:1-103) Hyp 46.6 3.5 0.00026 22.2 1.1 34 4-37 63-97 (103)
5 d2i9wa1 d.17.4.30 (A:46-158) H 41.1 4.5 0.00033 23.1 1.0 14 15-28 10-23 (113)
6 d1qf8a_ g.41.4.1 (A:) Casein k 33.5 9.4 0.00069 23.4 1.7 17 25-41 70-86 (173)
7 d2bdta1 c.37.1.25 (A:1-176) Hy 29.7 10 0.00075 19.4 1.2 14 3-18 9-22 (176)
8 d1y63a_ c.37.1.1 (A:) Probable 27.8 17 0.0012 18.9 2.0 13 4-18 13-25 (174)
9 d1khta_ c.37.1.1 (A:) Adenylat 24.8 14 0.001 19.1 1.3 14 3-18 8-21 (190)
10 d1knqa_ c.37.1.17 (A:) Glucona 24.6 21 0.0015 18.5 1.9 14 3-18 13-26 (171)
11 d1rkba_ c.37.1.1 (A:) Adenylat 24.5 21 0.0016 18.3 2.0 13 4-18 12-24 (173)
12 d1ly1a_ c.37.1.1 (A:) Polynucl 24.0 13 0.00092 19.2 0.9 13 3-17 9-21 (152)
13 d2choa3 d.92.2.3 (A:5-126) Glu 23.6 17 0.0012 19.0 1.4 13 25-37 94-106 (122)
14 d1vr8a1 d.312.1.1 (A:25-154) H 23.4 9.8 0.00072 23.1 0.4 14 4-18 1-14 (130)
15 d2e74g1 f.23.26.1 (G:9-35) Pet 22.2 16 0.0012 16.8 1.0 12 23-34 9-20 (27)
16 d1bifa1 c.37.1.7 (A:37-249) 6- 20.4 16 0.0012 19.6 0.9 9 8-16 12-20 (213)
17 d2c0sa1 a.30.7.1 (A:1-57) Hypo 20.1 16 0.0011 19.4 0.8 16 27-42 22-37 (57)
No 1
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=58.78 E-value=1.9 Score=24.60 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=11.2
Q ss_pred hhhhhhhHHHHHHH
Q 035404 25 FGVVYGNMKLKILK 38 (53)
Q Consensus 25 ~GvvYG~~h~~~Lk 38 (53)
.|++||.+|+.-+-
T Consensus 109 ~G~lYGvf~Ll~~l 122 (139)
T d1l8na2 109 AGVLYGVFHFLRLL 122 (139)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 59999999985543
No 2
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=56.66 E-value=1.8 Score=23.79 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.9
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhh-hhhhHHHHHHH
Q 035404 4 PPGPYSGTSTLALVARASAFTFGV-VYGNMKLKILK 38 (53)
Q Consensus 4 ~~~~ysgtSt~anV~R~SAl~~Gv-vYG~~h~~~Lk 38 (53)
-||.|+|.=.++.+++.-++..++ +||.-++..|-
T Consensus 63 GPGsfTglRig~s~akgla~~~~ip~~~v~sl~~la 98 (106)
T d1okja1 63 GPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMA 98 (106)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHcCCCEEEeCHHHHHH
Confidence 499999999999999999998887 67776666553
No 3
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=53.45 E-value=2.7 Score=24.32 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=11.9
Q ss_pred hhhhhhhHHHHHHHH
Q 035404 25 FGVVYGNMKLKILKM 39 (53)
Q Consensus 25 ~GvvYG~~h~~~Lka 39 (53)
-|++||.+|+.-+-+
T Consensus 118 rG~LYG~f~lLr~l~ 132 (147)
T d1h41a2 118 VGVLYGSFHLLRLIQ 132 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHHHH
Confidence 499999999876544
No 4
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=46.56 E-value=3.5 Score=22.24 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=25.5
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhh-hhhhHHHHHH
Q 035404 4 PPGPYSGTSTLALVARASAFTFGV-VYGNMKLKIL 37 (53)
Q Consensus 4 ~~~~ysgtSt~anV~R~SAl~~Gv-vYG~~h~~~L 37 (53)
.||.|.|.=.++-+++--+++.++ +||+-++..|
T Consensus 63 GPGsfTglRig~s~akgla~~~~ip~~gis~l~~l 97 (103)
T d2a6aa1 63 GPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMT 97 (103)
T ss_dssp CSSCHHHHHHHHHHHHHHHGGGTCCEEEECHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHcCCCEEEeCHHHHH
Confidence 589998888888888888887776 5666665554
No 5
>d2i9wa1 d.17.4.30 (A:46-158) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=41.08 E-value=4.5 Score=23.06 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhhhh
Q 035404 15 ALVARASAFTFGVV 28 (53)
Q Consensus 15 anV~R~SAl~~Gvv 28 (53)
..=.||||+..|-+
T Consensus 10 LMRSRYSAy~~~~~ 23 (113)
T d2i9wa1 10 LMRTRYSAFVLVKP 23 (113)
T ss_dssp HHHHHHHHHHHTCH
T ss_pred HHHhhhHhhhcCCc
Confidence 35589999999984
No 6
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.50 E-value=9.4 Score=23.39 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=13.3
Q ss_pred hhhhhhhHHHHHHHHhh
Q 035404 25 FGVVYGNMKLKILKMKA 41 (53)
Q Consensus 25 ~GvvYG~~h~~~Lka~~ 41 (53)
+-.+||.+|.|.|...+
T Consensus 70 a~~LYGLIHaRyI~T~~ 86 (173)
T d1qf8a_ 70 AEMLYGLIHARYILTNR 86 (173)
T ss_dssp HHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhhhheeecHh
Confidence 45689999999987533
No 7
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=29.67 E-value=10 Score=19.40 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=9.7
Q ss_pred CCCCCCCChhHHHHHH
Q 035404 3 PPPGPYSGTSTLALVA 18 (53)
Q Consensus 3 ~~~~~ysgtSt~anV~ 18 (53)
.||| ||-||+++-+
T Consensus 9 G~~G--sGKTTva~~L 22 (176)
T d2bdta1 9 GPAG--VGKSTTCKRL 22 (176)
T ss_dssp CSTT--SSHHHHHHHH
T ss_pred CCCC--CCHHHHHHHH
Confidence 3555 8999987644
No 8
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=27.82 E-value=17 Score=18.91 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=10.0
Q ss_pred CCCCCCChhHHHHHH
Q 035404 4 PPGPYSGTSTLALVA 18 (53)
Q Consensus 4 ~~~~ysgtSt~anV~ 18 (53)
||| ||-||+++.+
T Consensus 13 ~~G--sGKTT~~~~L 25 (174)
T d1y63a_ 13 TPG--TGKTSMAEMI 25 (174)
T ss_dssp STT--SSHHHHHHHH
T ss_pred CCC--CCHHHHHHHH
Confidence 455 8999988777
No 9
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=24.80 E-value=14 Score=19.05 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=10.3
Q ss_pred CCCCCCCChhHHHHHH
Q 035404 3 PPPGPYSGTSTLALVA 18 (53)
Q Consensus 3 ~~~~~ysgtSt~anV~ 18 (53)
.+|| ||-||+++-+
T Consensus 8 G~~G--sGKsT~~~~L 21 (190)
T d1khta_ 8 GVPG--VGSTTSSQLA 21 (190)
T ss_dssp CCTT--SCHHHHHHHH
T ss_pred CCCC--CCHHHHHHHH
Confidence 4677 8999987644
No 10
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=24.58 E-value=21 Score=18.54 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=10.5
Q ss_pred CCCCCCCChhHHHHHH
Q 035404 3 PPPGPYSGTSTLALVA 18 (53)
Q Consensus 3 ~~~~~ysgtSt~anV~ 18 (53)
.+|| ||-||+++.+
T Consensus 13 G~~G--sGKsT~a~~L 26 (171)
T d1knqa_ 13 GVSG--SGKSAVASEV 26 (171)
T ss_dssp CSTT--SCHHHHHHHH
T ss_pred CCCC--CCHHHHHHHH
Confidence 4666 8999987755
No 11
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=24.48 E-value=21 Score=18.31 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=8.9
Q ss_pred CCCCCCChhHHHHHH
Q 035404 4 PPGPYSGTSTLALVA 18 (53)
Q Consensus 4 ~~~~ysgtSt~anV~ 18 (53)
||| ||=||+++-+
T Consensus 12 ~pG--sGKTTia~~L 24 (173)
T d1rkba_ 12 TPG--VGKTTLGKEL 24 (173)
T ss_dssp STT--SSHHHHHHHH
T ss_pred CCC--CCHHHHHHHH
Confidence 455 8999976544
No 12
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=24.03 E-value=13 Score=19.22 Aligned_cols=13 Identities=54% Similarity=0.531 Sum_probs=9.5
Q ss_pred CCCCCCCChhHHHHH
Q 035404 3 PPPGPYSGTSTLALV 17 (53)
Q Consensus 3 ~~~~~ysgtSt~anV 17 (53)
.+|| ||=||+++-
T Consensus 9 G~pG--sGKTTla~~ 21 (152)
T d1ly1a_ 9 GCPG--SGKSTWARE 21 (152)
T ss_dssp CCTT--SSHHHHHHH
T ss_pred CCCC--CCHHHHHHH
Confidence 4555 899998874
No 13
>d2choa3 d.92.2.3 (A:5-126) Glucosaminidase GH84, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=23.63 E-value=17 Score=19.02 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=10.3
Q ss_pred hhhhhhhHHHHHH
Q 035404 25 FGVVYGNMKLKIL 37 (53)
Q Consensus 25 ~GvvYG~~h~~~L 37 (53)
.|+|||..=++-|
T Consensus 94 ~G~~yg~qTL~QL 106 (122)
T d2choa3 94 RGTYYALQTFAQL 106 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999998777655
No 14
>d1vr8a1 d.312.1.1 (A:25-154) Hypothetical protein TM1622 {Thermotoga maritima [TaxId: 2336]}
Probab=23.43 E-value=9.8 Score=23.10 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=10.7
Q ss_pred CCCCCCChhHHHHHH
Q 035404 4 PPGPYSGTSTLALVA 18 (53)
Q Consensus 4 ~~~~ysgtSt~anV~ 18 (53)
|||.||=.|++ +++
T Consensus 1 pP~sySl~sAi-~iL 14 (130)
T d1vr8a1 1 PPEAYSLDTAI-FVL 14 (130)
T ss_dssp CCTTSCHHHHH-HTT
T ss_pred CCccccHHHHH-HHh
Confidence 89999988883 543
No 15
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.23 E-value=16 Score=16.80 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=9.3
Q ss_pred hhhhhhhhhHHH
Q 035404 23 FTFGVVYGNMKL 34 (53)
Q Consensus 23 l~~GvvYG~~h~ 34 (53)
-..|+||..++|
T Consensus 9 tl~glf~aayqq 20 (27)
T d2e74g1 9 TLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356999998875
No 16
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.44 E-value=16 Score=19.57 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=7.4
Q ss_pred CCChhHHHH
Q 035404 8 YSGTSTLAL 16 (53)
Q Consensus 8 ysgtSt~an 16 (53)
=||=||+++
T Consensus 12 gsGKSTla~ 20 (213)
T d1bifa1 12 ARGKTYISK 20 (213)
T ss_dssp TSSHHHHHH
T ss_pred CCCHHHHHH
Confidence 389999887
No 17
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=20.06 E-value=16 Score=19.38 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHhhh
Q 035404 27 VVYGNMKLKILKMKAK 42 (53)
Q Consensus 27 vvYG~~h~~~Lka~~~ 42 (53)
--||+.|+++|.-+.+
T Consensus 22 ~~YGf~h~kvl~~SQE 37 (57)
T d2c0sa1 22 EKYGFTHHKVISFSQE 37 (57)
T ss_dssp HHTCTTSHHHHHHHHH
T ss_pred HHHCCCchHHHHHHHH
Confidence 3599999999986543
Done!