BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035406
(57 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/45 (88%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y DSYISTIGVDF
Sbjct: 2 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDF 46
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 53
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/45 (84%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGK+CLLLRFADD+Y +SYISTIGVDF
Sbjct: 9 MNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDF 53
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/44 (88%), Positives = 41/44 (93%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
S EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 19 SPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 62
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/42 (90%), Positives = 40/42 (95%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 43
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/42 (90%), Positives = 40/42 (95%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 70
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
Length = 175
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/42 (90%), Positives = 40/42 (95%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 46
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
Length = 181
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/42 (90%), Positives = 40/42 (95%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 46
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 39/42 (92%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
EYD LFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 43
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M++EYDYLFKLLLIG+S VGKSCLLLRF+DD+Y + YISTIGVDF
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF 45
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M++EYDYLFKLLLIG+S VGKSCLLLRF+DD+Y + YISTIGVDF
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF 45
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+EYDYLFKLLLIG+S VGKSCLLLRF+DD+Y + YISTIGVDF
Sbjct: 16 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF 58
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++ SYI+TIGVDF
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF 46
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 70.1 bits (170), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 39/45 (86%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YDYLFKLLLIGDS VGK+C+L RF++D++ ++ISTIG+DF
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF 45
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 34/36 (94%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
KLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 36
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 33/35 (94%)
Query: 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
LLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 35
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/40 (67%), Positives = 36/40 (90%)
Query: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
DYLFKLLLIGDS VGK+C+L RF++D++ ++ISTIG+DF
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF 43
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 62.0 bits (149), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52
S+ +DY FK+L+IG+SSVGK+ L R+ADDS+ +++ST+G+DF + +IY
Sbjct: 2 SHXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF-KVKTIY 51
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
DY+FKLLLIG+SSVGK+ L R+ADDS+ +++ST+G+DF
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF 59
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
YD + K+LLIGDS VGKSCLL+RF +D + S+I+TIG+DF
Sbjct: 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF 57
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52
+DY+FK+L+IG+SSVGK+ L R+ADDS+ +++ST+G+DF + +IY
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF-KVKTIY 48
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 36/41 (87%)
Query: 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+DY+FKLL+IG+SSVGK+ L R+ADD++ +++ST+G+DF
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF 60
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
D + K+LLIGDS VGKSCLL+RF +D + S+I+TIG+DF
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF 40
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
D + K+LLIGDS VGKSCLL+RF +D + S+I+TIG+DF
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF 40
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
D + K+LLIGDS VGKSCLL+RF +D + S+I+TIG+DF
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF 40
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+ K+LLIGDS VGKSCLL+RF +D + S+I+TIG+DF
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF 44
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52
S +YDYL KLL +GDS VGK+ L R+ D+ + +I+T+G+DF +Y
Sbjct: 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY 69
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 34/42 (80%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+YD+LFKL+L+GD+SVGK+C++ RF ++ + STIGVDF
Sbjct: 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDF 66
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Query: 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDF 45
YD FK++L+GDS VGK+CLL+RF D +++ ++IST+G+DF
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDF 48
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52
+YDYL KLL +GDS VGK+ L R+ D+ + +I+T+G+DF +Y
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY 55
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
EYDYLFK++LIGDS VGKS LL RF + + STIGV+F + S
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 46
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52
+YDYL KLL +GDS VGK+ L R+ D+ + +I+T+G+DF +Y
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY 55
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52
+YDYL KLL +GDS VGK+ L R+ D+ + +I+T+G+DF +Y
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY 55
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
M +YDYLFK++LIGDS VGKS LL RF D + STIGV+F + +
Sbjct: 3 MGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRT 51
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 35/48 (72%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
S+EYDYLFK++LIGDS VGKS LL RF + + STIGV+F + S
Sbjct: 2 SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 49
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52
+YDYL KLL +GDS VGK+ L R+ D+ + +I+T+G+DF +Y
Sbjct: 7 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY 55
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
+EYDYLFK++LIGDS VGKS LL RF + + STIGV+F + S
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 70
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
+EYDYLFK++LIGDS VGKS LL RF + + STIGV+F + S
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 70
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
YDYLFK++LIGDS VGKS LL RF D + STIGV+F + S
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKS 48
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
+EYDYLFK++LIGDS VGKS LL RF + + STIGV+F + S
Sbjct: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 52
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 52.4 bits (124), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+ + Y YLFK ++IGD+ VGKSCLLL+F D + + TIGV+F
Sbjct: 3 LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF 47
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 52.0 bits (123), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
MS YD+LFK L+IG++ GKSCLL +F + + D TIGV+F S
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS 49
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%)
Query: 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
YDYLFK++LIGDS VGKS LL RF + + STIGV+F + S
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 46
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 32/45 (71%)
Query: 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
YDYLFK++LIGDS VGKS LL RF + + STIGV+F + S
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 61
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
YLFK ++IGD+ VGKSCLLL+F D + + TIGV+F
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF 58
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp
Analogue
Length = 201
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46
+YD+LFK++LIG++ VGK+CL+ RF + +TIGVDF+
Sbjct: 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM 64
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52
+YDYL K L +GDS VGK+ +L ++ D + +I+T+G+DF +Y
Sbjct: 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVY 55
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
S YD+LFK L+IG++ GKSCLL +F + + D TIGV+F S
Sbjct: 5 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS 50
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
+YD LFK++LIGDS VGKS LL RF + + STIGV+F +
Sbjct: 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFAT 52
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
K+L+IG+S VGKS LLLRF DD++ +TIGVDF
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF 52
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
S YD+LFK L+IG++ GKSCLL +F + + D TIGV+F S
Sbjct: 2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS 47
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
FKL+ +G+ SVGK+ L+ RF DS+ ++Y +TIG+DF+S
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS 55
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
FKL+ +G+ SVGK+ L+ RF DS+ ++Y +TIG+DF+S
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS 52
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
FKL+ +G+ SVGK+ L+ RF DS+ ++Y +TIG+DF+S
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS 45
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
FKL+ +G+ SVGK+ L+ RF DS+ ++Y +TIG+DF+S
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS 40
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
FKL+ +G+ SVGK+ L+ RF DS+ ++Y +TIG+DF+S
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS 45
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
Y Y+FK ++IGD VGKSCLL +F + ++ TIGV+F
Sbjct: 27 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF 67
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
FKL+ +G+ SVGK+ L+ RF DS+ ++Y +TIG+DF+S
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS 41
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
Y Y+FK ++IGD VGKSCLL +F + ++ TIGV+F
Sbjct: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF 52
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+FK+++IGDS+VGK+CL RF + D +TIGVDF
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF 57
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With
Rab33 Gtpase Bound To Gdp And Alf3
Length = 198
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+FK+++IGDS+VGK+CL RF + D +TIGVDF
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF 66
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
MS+ + K++++GDS VGK+ L+ R+ +D Y Y +TIG DF++
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT 47
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
FKL+ +G+ SVGK+ L+ RF DS+ ++Y +TIG+DF+S
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS 53
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
S +Y+++FK++LIG+S VGK+ LL RF + + +TIGV+F
Sbjct: 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEF 62
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
D+LFK L+IG + GKSCLL +F ++ + TIGV+F S
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGS 64
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+Y+++FK++LIG+S VGK+ LL RF + + +TIGV+F
Sbjct: 6 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEF 47
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 31/39 (79%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
+KL+ +G+ +VGK+ ++ RF D++ ++Y STIG+DF+S
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLS 40
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
D+ ++++IG VGK+ L+ RF DD++ ++ ST+GVDF
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF 63
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 31/41 (75%)
Query: 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
Y FK++L+G+ VGK+ L+LR+ ++ + D +I+T+G F++
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLT 45
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S+VGKS L+LRF + + STIG F++ +
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 48
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S+VGKS L+LRF + + STIG F++ +
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQT 44
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S+VGKS L+LRF + + STIG F++ +
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 47
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S+VGKS L+LRF + + STIG F++ +
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQT 46
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S+VGKS L+LRF + + STIG F++ +
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 46
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S+VGKS L+LRF + + STIG F++ +
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 48
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
M++ L K++++GDS VGK+ L+ ++ + + + Y +TIG DF++
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT 47
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
M++ L K++++GDS VGK+ L+ ++ + + + Y +TIG DF++
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT 47
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
M++ L K++++GDS VGK+ L+ ++ + + + Y +TIG DF++
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT 47
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
M++ L K++++GDS VGK+ L+ ++ + + + Y +TIG DF++
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT 47
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S VGKS L+LRF + + STIG F++ +
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 47
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S VGKS L+LRF + + STIG F++ +
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 47
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S VGKS L+LRF + + STIG F++ +
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 47
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S VGKS L+LRF + + STIG F++ +
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 47
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S+VGKS L+LRF + + STIG F++ S
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQS 49
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+L+GD GKS L+LRF D +V+ STIG F S
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFS 51
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 27/34 (79%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+ K +++GD +VGK+CLL+ +A+D++ + Y+ T+
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 51
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 30/41 (73%)
Query: 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
Y FK++L+G+ VGK+ L+LR+ ++ + D +I+T+ F++
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLT 59
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 30/41 (73%)
Query: 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
Y FK++L+G+ VGK+ L+LR+ ++ + D +I+T+ F++
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLT 45
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S VGKS L+LRF + + STIG F++ +
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 47
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+L+G+++VGKS ++LRF + + ++ TIG F++
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLT 42
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
LFK++L+GD VGKS L+ R+ + + TIGV+F++
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLN 50
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++V+
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA 47
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++V+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA 46
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++V+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA 46
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++V+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA 46
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++V+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA 45
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++V+
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA 48
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++V+
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA 44
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+G+S+VGKS L+LRF + + STI F++ +
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQT 46
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+K++L GD++VGKS L+R + + ++ +T+GVDF
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF 65
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYM 53
K+ L+GD+ VGKS ++ RF +DS+ + TIG F++ + Y
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ 51
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+GD GK+ + R + YI+TIGV+ LS
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLS 45
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++++
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA 64
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++++
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA 64
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++V+
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA 64
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + + Y+ T+ ++V+
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA 45
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
LFK++L+GD VGKS L+ R+ + + TIGV+F++
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN 48
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYM 53
K+ L+GD+ VGKS ++ RF +DS+ + TIG F++ + Y
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQ 50
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
LFK++L+GD VGKS L+ R+ + + TIGV+F++
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN 46
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ F+ D + Y+ T+ ++V+
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA 44
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 37.0 bits (84), Expect = 0.002, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
L K++L+GD VGKS L+ R+ + + TIGV+F++
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLN 46
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
L K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 188
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
L K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 188
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
L K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 188
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+GD GK+ + R + YI+TIGV+ LS
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLS 53
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49
FKL+L+GD GK+ + R + YI+TIGV+ LS
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLS 46
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYMY 54
K++++GD +VGK+CLLL F+ +Y+ T+ F + S + Y
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV---FENFSHVMKY 65
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
+K +L+G+SSVGKS ++LR D++ ++ +TIG F +
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCT 46
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
K++++G+ +VGKS ++ R+ + Y TIGVDF+
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLE 44
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding
Protein Rhod
Length = 214
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K++L+GD GK+ LL+ FAD ++ +SY T+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ + D + + Y+ T+ ++V+
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA 42
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ + D + + Y+ T+ ++V+
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA 47
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ + D + + Y+ T+ ++V+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA 44
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ + D + + Y+ T+ ++V+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA 44
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ + D + + Y+ T+ ++V+
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA 42
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ + D + + Y+ T+ ++V+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA 44
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
K++++GD +VGK+CLLL F+ +Y+ T+ +F
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 60
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To
Gdp
Length = 169
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51
K+ ++G SVGKS L ++F + +VDSY TI F L ++
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV 44
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ + D + + Y+ T+ ++++
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA 44
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
K+ L+GD+ VGKS ++ RF D + + TIG F++
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT 62
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51
K+ ++G SVGKS L ++F + +VDSY TI F L ++
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV 49
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 40
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 63
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 39
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 63
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV 46
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 37
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 55
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 37
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 36
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV 43
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 43
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 39
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 40
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal
Domain Sopb In Complex With Cdc42
Length = 193
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 46
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 38
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 40
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 37
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 39
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
Length = 177
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51
K+ ++G SVGKS L ++F + +VDSY TI F L ++
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV 49
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
Length = 180
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 38
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
K++++GD + GK+ L FA +++ Y TIG+DF
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDF 43
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In
Complex With Cdc42 (T17n Mutant)
Length = 195
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV 43
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV 42
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
K + +GD +VGK+CLL+ + +++ Y+ T+ +F
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF 45
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ T+
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + +++ YI T+
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV 43
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 39
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 48
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 42
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 51
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y++T+GV+
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYMYIC 56
SN+Y ++ + G VGKS L+LRF ++ +SYI T+ + + S IC
Sbjct: 1 SNDY----RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSIC 51
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 33.1 bits (74), Expect = 0.035, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K++++GDS GK+ LL FA D + ++Y+ T+
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 61
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + ++ YI T+
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIPTV 63
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
Length = 200
Score = 33.1 bits (74), Expect = 0.039, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K++++GDS GK+ LL FA D + ++Y+ T+
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 56
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 33.1 bits (74), Expect = 0.045, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
K + +GD +VGK+C+L+ + +++ Y+ T+ +F
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF 43
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 32.7 bits (73), Expect = 0.048, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K++++GDS GK+ LL FA D + ++Y+ T+
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 40
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 180
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
K + +GD +VGK+C+L+ + +++ Y+ T+ +F
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF 43
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y+ T+GV+
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE 46
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R + Y+ T+GV+
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE 46
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47
KL+++GD + GK+CLL+ + + + Y+ T+ ++V+
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVA 49
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
K + +GD +VGK+C+L+ + + + YI T+ +F
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF 46
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 32.3 bits (72), Expect = 0.062, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYIST 40
L K++++G VGKS L L+F D +V+ Y T
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 39
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 32.3 bits (72), Expect = 0.062, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYIST 40
L K++++G VGKS L L+F D +V+ Y T
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 35
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + Y+ T+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV 36
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYIST 40
L K++++G VGKS L L+F D +V+ Y T
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 46
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 32.3 bits (72), Expect = 0.069, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
KL+L+GD GK+ +L A D Y ++Y+ T+
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV 43
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYIST 40
L K++++G VGKS L L+F D +V+ Y T
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 36
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51
K+ ++G SVGKS L ++F + +VDS TI F L ++
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITV 47
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 32.3 bits (72), Expect = 0.076, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
KL+L+GD GK+ +L A D Y ++Y+ T+
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV 60
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 32.0 bits (71), Expect = 0.078, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
KL+L+GD GK+ +L A D Y ++Y+ T+
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV 44
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
K +++GD +VGK+CLL+ + + + Y+ +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV 36
>pdb|1CLU|A Chain A, H-Ras Complexed With
Diaminobenzophenone-Beta,Gamma-Imido- Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++ + +VD Y TI
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++ + +VD Y TI
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals
A Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 32.0 bits (71), Expect = 0.089, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYIST 40
L K++++G VGKS L L+F D +V+ Y T
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 50
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 32.0 bits (71), Expect = 0.089, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYIST 40
L K++++G VGKS L L+F D +V+ Y T
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 38
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 32.0 bits (71), Expect = 0.098, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51
K +L+GD +VGK+ L++ + + Y YI T +F ++ S+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSV 63
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++ + +VD Y TI
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYIST 40
L K++++G VGKS L L+F D +V+ Y T
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT 38
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44
FKL+L+GD GK+ + R Y++T+GV+
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVE 51
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++F +VD Y TI
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI 36
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++ + +VD Y TI
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 36
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++ + +VD Y TI
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIG 42
+K+ LIGD VGK+ + R D + +Y +T+G
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG 45
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++ + +VD Y TI
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI 37
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++F +V+ Y TI
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 36
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++F +V+ Y TI
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 36
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
+KL+++G VGKS L ++F +V+ Y TI
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI 38
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound
Gdp
Length = 195
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 4 EYDYLFKLLLIGDSSVGKSCL 24
+ D +FK++L+G+S VGKS L
Sbjct: 19 QKDGIFKVMLVGESGVGKSTL 39
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 8 LFKLLLIGDSSVGKSCLLLRFA 29
+FK++L+G+S VGKS L F
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFG 23
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
Length = 180
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 6 DYLFKLLLIGDSSVGKSCL 24
D +FK++L+G+S VGKS L
Sbjct: 10 DGVFKVMLLGESGVGKSTL 28
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound
State
Length = 196
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41
KL + G + VGKS L++RF ++ Y T+
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL 61
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 21 KSCLLLRFADDSYVDSYISTIGVDFVSLSSIYMYIC 56
KS L+LRF ++ D+YI TI + + S +C
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVC 56
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From
Chlamydomonas
Length = 208
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 10 KLLLIGDSSVGKSCLLLRFAD--DSYVDSYISTIGVDFV 46
K+ ++G+++VGKS L+ F ++ Y T GV+ V
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVV 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,549,414
Number of Sequences: 62578
Number of extensions: 44172
Number of successful extensions: 499
Number of sequences better than 100.0: 277
Number of HSP's better than 100.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 277
length of query: 57
length of database: 14,973,337
effective HSP length: 29
effective length of query: 28
effective length of database: 13,158,575
effective search space: 368440100
effective search space used: 368440100
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)