BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035406
(57 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/45 (95%), Positives = 45/45 (100%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
MSNEYDYLFKLLLIGDSSVGKSCLLLRFADD+Y+DSYISTIGVDF
Sbjct: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDF 45
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/45 (95%), Positives = 44/45 (97%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
MSNE+DYLFKLLLIGDSSVGKSC LLRFADDSYVDSYISTIGVDF
Sbjct: 1 MSNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDF 45
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/45 (91%), Positives = 43/45 (95%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADDSY+DSYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF 45
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/45 (91%), Positives = 43/45 (95%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADDSY+DSYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF 45
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/45 (91%), Positives = 43/45 (95%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADDSY+DSYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF 45
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/45 (88%), Positives = 43/45 (95%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRF+DDSYV+SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDF 45
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 85.9 bits (211), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/45 (88%), Positives = 43/45 (95%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADDSY++SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDF 45
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans
GN=YPT1 PE=3 SV=1
Length = 201
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1
SV=1
Length = 201
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 48
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ypt-1 PE=3 SV=1
Length = 203
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1
SV=3
Length = 205
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 48
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 48
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 48
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 48
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/45 (86%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 45
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2
SV=1
Length = 205
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/45 (84%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ +YDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDF
Sbjct: 4 MNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 48
>sp|Q92928|RAB1C_HUMAN Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5
SV=2
Length = 201
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/45 (82%), Positives = 39/45 (86%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YD LFKLLLIGDS VGKSCLLLRFADD Y +SYISTIGVDF
Sbjct: 1 MNPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDF 45
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 42/45 (93%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M++EYDYLFKLLLIG+S VGKSCLLLRF+DD+Y + YISTIGVDF
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF 45
>sp|P34139|RAB1A_DICDI Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A
PE=2 SV=2
Length = 202
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/45 (80%), Positives = 41/45 (91%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ +Y YLFKLLLIGDS VGKSCLLLRFADD+Y +S+ISTIGVDF
Sbjct: 1 MNPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDF 45
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ E+D+ FK+LLIGDS VGKSCLLLRFADDS+ D++ISTIGVDF
Sbjct: 3 MAPEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDF 47
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 41/45 (91%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YD+LFKLLLIGDS VGK+CL++RFA+D++ ++YISTIG+DF
Sbjct: 1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDF 45
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 41/45 (91%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YD+LFKLLLIGDS VGK+CL++RFA+D++ ++YISTIG+DF
Sbjct: 1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDF 45
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 41/45 (91%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YD+LFKLLLIGDS VGK+CL++RFA+D++ ++YISTIG+DF
Sbjct: 1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDF 45
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 40/45 (88%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YD+LFKLLLIGDS VGK+CL++RFA+D++ +YISTIG+DF
Sbjct: 1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDF 45
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
S YDYL KLLLIGDS VGKSCLLLRF++DS+ S+I+TIG+DF
Sbjct: 9 SAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDF 52
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2
SV=2
Length = 203
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 40/45 (88%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YD+LFKLLLIGDS VGK+CL++RFA+D++ +YISTIG+DF
Sbjct: 1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDF 45
>sp|Q5U316|RAB35_RAT Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2
SV=1
Length = 201
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++ SYI+TIGVDF
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF 45
>sp|Q6PHN9|RAB35_MOUSE Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1
Length = 201
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++ SYI+TIGVDF
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF 45
>sp|Q15286|RAB35_HUMAN Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1
Length = 201
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ +YD+LFKLL+IGDS VGKS LLLRFAD+++ SYI+TIGVDF
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF 45
>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C
PE=2 SV=1
Length = 201
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
EYD L K+L+IGDS VGKSC+LLRFAD+ + DSYISTIGVDF
Sbjct: 29 EYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDF 70
>sp|Q5R4A3|RAB8A_PONAB Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1
Length = 207
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 39/45 (86%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YDYLFKLLLIGDS VGK+C+L RF++D++ ++ISTIG+DF
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF 45
>sp|Q4UB16|RAB1_THEAN Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1
Length = 220
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
EYDYLFK+++IGDS GKS LLLRFAD++Y +SY+STIGVDF
Sbjct: 3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDF 44
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2
SV=1
Length = 207
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 39/45 (86%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YDYLFKLLLIGDS VGK+C+L RF++D++ ++ISTIG+DF
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF 45
>sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1
Length = 207
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 39/45 (86%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YDYLFKLLLIGDS VGK+C+L RF++D++ ++ISTIG+DF
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF 45
>sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1
Length = 207
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 39/45 (86%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YDYLFKLLLIGDS VGK+C+L RF++D++ ++ISTIG+DF
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF 45
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 38/45 (84%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YDYLFKLLLIGDS VGK+C L RF++D++ ++ISTIG+DF
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDF 45
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 39/45 (86%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YDYLFKLLLIGDS VGK+CLL RF++D++ ++ISTIG+DF
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDF 45
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 38/44 (86%)
Query: 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
+ YDYL KLLLIGDS VGKSCLLLRF++DS+ S+I+TIG+DF
Sbjct: 3 TKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDF 46
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2
SV=2
Length = 207
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 39/45 (86%)
Query: 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45
M+ YDYLFKLLLIGDS VGK+C+L RF++D++ ++ISTIG+DF
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF 45
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,175,030
Number of Sequences: 539616
Number of extensions: 533430
Number of successful extensions: 3822
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3044
Number of HSP's gapped (non-prelim): 782
length of query: 57
length of database: 191,569,459
effective HSP length: 30
effective length of query: 27
effective length of database: 175,380,979
effective search space: 4735286433
effective search space used: 4735286433
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)