Query 035406
Match_columns 57
No_of_seqs 108 out of 1099
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 99.7 9E-17 1.9E-21 91.3 6.0 53 1-53 2-54 (205)
2 KOG0078 GTP-binding protein SE 99.5 7.3E-14 1.6E-18 79.9 6.2 51 4-54 8-58 (207)
3 KOG0080 GTPase Rab18, small G 99.5 2.5E-13 5.3E-18 76.1 6.2 48 4-51 7-54 (209)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 2.4E-13 5.1E-18 77.7 6.0 48 6-53 20-67 (221)
5 KOG0394 Ras-related GTPase [Ge 99.4 1.2E-13 2.6E-18 78.3 3.4 51 1-51 1-52 (210)
6 KOG0079 GTP-binding protein H- 99.4 3.7E-13 8E-18 74.7 2.2 51 1-51 1-51 (198)
7 cd04128 Spg1 Spg1p. Spg1p (se 99.3 6.9E-12 1.5E-16 70.0 5.8 43 9-51 1-43 (182)
8 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 1E-11 2.2E-16 69.5 6.4 42 5-46 2-43 (182)
9 KOG0087 GTPase Rab11/YPT3, sma 99.3 7.2E-12 1.6E-16 72.1 5.8 49 2-50 8-56 (222)
10 KOG0092 GTPase Rab5/YPT51 and 99.3 5.3E-12 1.2E-16 71.8 5.1 46 7-52 4-49 (200)
11 cd04121 Rab40 Rab40 subfamily. 99.3 1.5E-11 3.3E-16 69.3 6.9 48 4-51 2-49 (189)
12 cd04127 Rab27A Rab27a subfamil 99.3 1.5E-11 3.2E-16 67.5 6.6 47 6-52 2-48 (180)
13 KOG0093 GTPase Rab3, small G p 99.3 8.8E-12 1.9E-16 69.1 4.6 48 3-50 16-63 (193)
14 cd04120 Rab12 Rab12 subfamily. 99.3 1.8E-11 3.8E-16 69.7 5.9 44 9-52 1-44 (202)
15 KOG0081 GTPase Rab27, small G 99.3 1.4E-13 2.9E-18 77.2 -2.9 51 4-54 5-55 (219)
16 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 3.1E-11 6.6E-16 66.6 6.4 41 10-50 2-42 (170)
17 cd01875 RhoG RhoG subfamily. 99.3 2.9E-11 6.2E-16 67.8 6.3 40 8-47 3-42 (191)
18 cd01892 Miro2 Miro2 subfamily. 99.3 2.4E-11 5.3E-16 66.8 5.9 44 7-50 3-47 (169)
19 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 3.4E-11 7.5E-16 67.7 6.4 43 9-51 1-43 (201)
20 cd01867 Rab8_Rab10_Rab13_like 99.2 3.3E-11 7.1E-16 65.8 6.1 44 7-50 2-45 (167)
21 cd04131 Rnd Rnd subfamily. Th 99.2 3.6E-11 7.7E-16 67.0 6.2 39 8-46 1-39 (178)
22 KOG0098 GTPase Rab2, small G p 99.2 2.5E-11 5.4E-16 69.2 5.6 46 5-50 3-48 (216)
23 cd04110 Rab35 Rab35 subfamily. 99.2 4.7E-11 1E-15 67.2 6.5 46 5-50 3-48 (199)
24 PLN03110 Rab GTPase; Provision 99.2 6.8E-11 1.5E-15 67.5 7.1 47 5-51 9-55 (216)
25 cd04119 RJL RJL (RabJ-Like) su 99.2 4.6E-11 1E-15 64.3 6.1 42 9-50 1-42 (168)
26 cd04133 Rop_like Rop subfamily 99.2 4.2E-11 9.2E-16 66.8 6.0 39 9-47 2-40 (176)
27 cd04102 RabL3 RabL3 (Rab-like3 99.2 4.5E-11 9.8E-16 68.2 6.2 44 9-52 1-44 (202)
28 cd04122 Rab14 Rab14 subfamily. 99.2 5.4E-11 1.2E-15 64.8 6.2 43 8-50 2-44 (166)
29 PLN03071 GTP-binding nuclear p 99.2 5.9E-11 1.3E-15 68.0 6.7 45 6-50 11-55 (219)
30 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.2 6E-11 1.3E-15 68.9 6.7 42 6-47 11-52 (232)
31 cd04117 Rab15 Rab15 subfamily. 99.2 6E-11 1.3E-15 64.6 6.2 43 9-51 1-43 (161)
32 PF00071 Ras: Ras family; Int 99.2 4.8E-11 1E-15 64.4 5.8 43 10-52 1-43 (162)
33 cd01874 Cdc42 Cdc42 subfamily. 99.2 5.8E-11 1.2E-15 65.8 6.2 39 9-47 2-40 (175)
34 PLN00023 GTP-binding protein; 99.2 5.7E-11 1.2E-15 72.2 6.4 48 5-52 18-65 (334)
35 KOG0086 GTPase Rab4, small G p 99.2 1.6E-11 3.4E-16 68.6 3.7 50 1-50 2-51 (214)
36 cd04111 Rab39 Rab39 subfamily. 99.2 7.2E-11 1.6E-15 67.2 6.3 45 7-51 1-45 (211)
37 cd04109 Rab28 Rab28 subfamily. 99.2 7.5E-11 1.6E-15 67.1 6.3 43 9-51 1-43 (215)
38 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 9E-11 1.9E-15 63.7 6.4 43 8-50 2-44 (166)
39 KOG0095 GTPase Rab30, small G 99.2 5.9E-11 1.3E-15 66.2 5.4 49 4-52 3-51 (213)
40 cd01865 Rab3 Rab3 subfamily. 99.2 1.2E-10 2.7E-15 63.4 6.4 42 9-50 2-43 (165)
41 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 7.7E-11 1.7E-15 68.0 5.7 38 9-46 2-39 (222)
42 cd01864 Rab19 Rab19 subfamily. 99.2 1.5E-10 3.2E-15 62.9 6.4 45 7-51 2-46 (165)
43 cd04116 Rab9 Rab9 subfamily. 99.2 2.7E-10 5.9E-15 62.0 7.0 45 6-50 3-47 (170)
44 cd04106 Rab23_lke Rab23-like s 99.2 2.1E-10 4.4E-15 61.9 6.4 43 9-51 1-43 (162)
45 cd01868 Rab11_like Rab11-like. 99.2 2.1E-10 4.6E-15 62.1 6.4 45 7-51 2-46 (165)
46 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 1.4E-10 3.1E-15 64.0 5.8 40 8-47 2-41 (172)
47 cd04138 H_N_K_Ras_like H-Ras/N 99.2 1.5E-10 3.1E-15 62.1 5.7 40 8-47 1-40 (162)
48 cd00877 Ran Ran (Ras-related n 99.1 2.2E-10 4.8E-15 62.8 6.2 42 9-50 1-42 (166)
49 cd01866 Rab2 Rab2 subfamily. 99.1 2.8E-10 6E-15 62.2 6.5 45 6-50 2-46 (168)
50 cd04125 RabA_like RabA-like su 99.1 2.6E-10 5.6E-15 63.3 6.4 42 9-50 1-42 (188)
51 PTZ00132 GTP-binding nuclear p 99.1 2.6E-10 5.7E-15 64.6 6.5 46 5-50 6-51 (215)
52 PLN03108 Rab family protein; P 99.1 2.7E-10 5.9E-15 64.7 6.4 45 6-50 4-48 (210)
53 cd04115 Rab33B_Rab33A Rab33B/R 99.1 3.5E-10 7.6E-15 61.9 6.4 43 8-50 2-44 (170)
54 KOG0091 GTPase Rab39, small G 99.1 7.6E-11 1.7E-15 66.4 3.7 46 3-48 3-48 (213)
55 cd04113 Rab4 Rab4 subfamily. 99.1 4.9E-10 1.1E-14 60.5 6.2 43 9-51 1-43 (161)
56 cd04142 RRP22 RRP22 subfamily. 99.1 2.4E-10 5.1E-15 64.7 4.9 40 9-48 1-40 (198)
57 cd04101 RabL4 RabL4 (Rab-like4 99.1 6E-10 1.3E-14 60.2 6.3 42 9-50 1-44 (164)
58 PTZ00369 Ras-like protein; Pro 99.1 3.9E-10 8.4E-15 62.9 5.7 40 7-46 4-43 (189)
59 cd01871 Rac1_like Rac1-like su 99.1 5.8E-10 1.3E-14 61.7 6.0 38 9-46 2-39 (174)
60 cd04136 Rap_like Rap-like subf 99.1 3.9E-10 8.4E-15 60.7 5.2 38 8-45 1-38 (163)
61 KOG0097 GTPase Rab14, small G 99.1 2.2E-10 4.8E-15 63.5 4.3 51 2-52 5-55 (215)
62 cd04175 Rap1 Rap1 subgroup. T 99.1 4.9E-10 1.1E-14 60.7 5.5 39 8-46 1-39 (164)
63 cd04118 Rab24 Rab24 subfamily. 99.1 6.9E-10 1.5E-14 61.7 6.1 42 9-50 1-43 (193)
64 cd04132 Rho4_like Rho4-like su 99.1 6.6E-10 1.4E-14 61.5 5.8 40 9-48 1-40 (187)
65 cd04124 RabL2 RabL2 subfamily. 99.1 9.8E-10 2.1E-14 59.8 6.3 40 9-48 1-40 (161)
66 COG1100 GTPase SAR1 and relate 99.1 7.1E-10 1.5E-14 62.5 5.9 45 8-52 5-49 (219)
67 cd01860 Rab5_related Rab5-rela 99.1 9.5E-10 2.1E-14 59.3 6.2 43 8-50 1-43 (163)
68 cd04134 Rho3 Rho3 subfamily. 99.1 7.1E-10 1.5E-14 61.9 5.8 39 9-47 1-39 (189)
69 cd01862 Rab7 Rab7 subfamily. 99.1 9.9E-10 2.1E-14 59.6 6.1 42 9-50 1-42 (172)
70 cd04114 Rab30 Rab30 subfamily. 99.0 2.3E-09 5.1E-14 58.1 7.1 47 5-51 4-50 (169)
71 cd01861 Rab6 Rab6 subfamily. 99.0 1.5E-09 3.2E-14 58.5 6.2 43 9-51 1-43 (161)
72 cd01870 RhoA_like RhoA-like su 99.0 1E-09 2.2E-14 59.9 5.5 39 9-47 2-40 (175)
73 cd04176 Rap2 Rap2 subgroup. T 99.0 1E-09 2.2E-14 59.3 5.5 35 8-42 1-35 (163)
74 cd04140 ARHI_like ARHI subfami 99.0 1.2E-09 2.6E-14 59.5 5.7 38 9-46 2-39 (165)
75 PLN03118 Rab family protein; P 99.0 2.1E-09 4.6E-14 60.8 6.6 47 3-50 9-55 (211)
76 smart00175 RAB Rab subfamily o 99.0 2E-09 4.4E-14 57.9 6.3 43 9-51 1-43 (164)
77 cd04126 Rab20 Rab20 subfamily. 99.0 2E-09 4.4E-14 62.1 6.4 41 9-50 1-41 (220)
78 cd04143 Rhes_like Rhes_like su 99.0 1.1E-09 2.4E-14 63.9 5.0 40 9-49 1-40 (247)
79 smart00173 RAS Ras subfamily o 99.0 2E-09 4.4E-14 58.1 5.1 38 9-46 1-38 (164)
80 cd01863 Rab18 Rab18 subfamily. 99.0 3.3E-09 7.1E-14 57.2 5.9 42 9-50 1-42 (161)
81 cd04145 M_R_Ras_like M-Ras/R-R 99.0 3.2E-09 7E-14 57.2 5.8 40 8-47 2-41 (164)
82 cd04144 Ras2 Ras2 subfamily. 99.0 1.6E-09 3.6E-14 60.4 4.7 38 10-47 1-38 (190)
83 cd04112 Rab26 Rab26 subfamily. 99.0 3.2E-09 7E-14 59.3 5.8 42 9-50 1-43 (191)
84 cd04148 RGK RGK subfamily. Th 99.0 2.5E-09 5.4E-14 61.3 5.4 42 9-50 1-43 (221)
85 KOG0395 Ras-related GTPase [Ge 98.9 7E-10 1.5E-14 63.2 3.1 45 8-52 3-47 (196)
86 cd04130 Wrch_1 Wrch-1 subfamil 98.9 3.7E-09 8.1E-14 58.0 5.8 37 9-45 1-37 (173)
87 smart00177 ARF ARF-like small 98.9 3.1E-09 6.8E-14 58.7 5.2 40 7-47 12-51 (175)
88 cd04135 Tc10 TC10 subfamily. 98.9 4.9E-09 1.1E-13 57.2 5.9 38 9-46 1-38 (174)
89 cd04162 Arl9_Arfrp2_like Arl9/ 98.9 2.4E-09 5.3E-14 58.6 4.7 37 10-46 1-37 (164)
90 cd04103 Centaurin_gamma Centau 98.9 4.8E-09 1E-13 57.4 5.5 36 9-45 1-36 (158)
91 cd00154 Rab Rab family. Rab G 98.9 7.8E-09 1.7E-13 54.7 6.1 43 9-51 1-43 (159)
92 cd04177 RSR1 RSR1 subgroup. R 98.9 5.4E-09 1.2E-13 57.0 5.5 39 8-46 1-39 (168)
93 PTZ00133 ADP-ribosylation fact 98.9 4.4E-09 9.6E-14 58.6 5.2 40 7-47 16-55 (182)
94 cd04123 Rab21 Rab21 subfamily. 98.9 8.8E-09 1.9E-13 55.1 6.0 42 9-50 1-42 (162)
95 PLN00223 ADP-ribosylation fact 98.9 5.5E-09 1.2E-13 58.2 5.4 39 7-46 16-54 (181)
96 TIGR00231 small_GTP small GTP- 98.9 1.3E-08 2.8E-13 53.4 6.2 44 8-51 1-44 (161)
97 smart00174 RHO Rho (Ras homolo 98.9 7.7E-09 1.7E-13 56.4 5.4 37 11-47 1-37 (174)
98 cd04150 Arf1_5_like Arf1-Arf5- 98.9 6.5E-09 1.4E-13 56.6 5.0 37 9-46 1-37 (159)
99 TIGR02528 EutP ethanolamine ut 98.9 5.2E-09 1.1E-13 55.6 4.5 38 10-49 2-39 (142)
100 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.9 8.6E-09 1.9E-13 57.3 5.2 41 8-49 3-43 (183)
101 cd04146 RERG_RasL11_like RERG/ 98.8 5.6E-09 1.2E-13 56.7 4.1 37 10-46 1-37 (165)
102 cd04149 Arf6 Arf6 subfamily. 98.8 1E-08 2.2E-13 56.4 5.1 39 7-46 8-46 (168)
103 cd04139 RalA_RalB RalA/RalB su 98.8 1.2E-08 2.5E-13 54.8 5.2 38 9-46 1-38 (164)
104 cd04158 ARD1 ARD1 subfamily. 98.8 1.2E-08 2.7E-13 55.9 5.2 37 10-47 1-37 (169)
105 cd00157 Rho Rho (Ras homology) 98.8 2E-08 4.4E-13 54.4 6.0 38 9-46 1-38 (171)
106 smart00176 RAN Ran (Ras-relate 98.8 1.2E-08 2.6E-13 58.0 5.1 37 14-50 1-37 (200)
107 cd04137 RheB Rheb (Ras Homolog 98.8 1.5E-08 3.3E-13 55.6 5.2 38 9-46 2-39 (180)
108 cd04159 Arl10_like Arl10-like 98.8 1.8E-08 4E-13 53.4 4.9 37 11-47 2-38 (159)
109 cd04129 Rho2 Rho2 subfamily. 98.8 2.8E-08 6E-13 55.3 5.7 39 9-47 2-40 (187)
110 KOG0070 GTP-binding ADP-ribosy 98.8 5.5E-09 1.2E-13 59.1 2.3 48 6-56 15-62 (181)
111 cd04157 Arl6 Arl6 subfamily. 98.7 2.3E-08 5E-13 53.7 4.6 36 10-45 1-37 (162)
112 KOG0088 GTPase Rab21, small G 98.7 2.9E-09 6.2E-14 59.9 0.9 47 4-50 9-55 (218)
113 cd04161 Arl2l1_Arl13_like Arl2 98.7 3.6E-08 7.8E-13 54.1 5.1 35 10-45 1-35 (167)
114 cd01873 RhoBTB RhoBTB subfamil 98.7 3.5E-08 7.6E-13 55.8 4.6 35 8-42 2-42 (195)
115 KOG4252 GTP-binding protein [S 98.7 1.8E-08 3.8E-13 57.7 3.3 43 7-49 19-61 (246)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 5.8E-08 1.3E-12 53.5 5.2 40 7-47 14-53 (174)
117 smart00010 small_GTPase Small 98.7 2.1E-08 4.5E-13 51.9 3.2 34 9-42 1-35 (124)
118 cd04147 Ras_dva Ras-dva subfam 98.7 4.6E-08 1E-12 54.9 4.7 33 10-42 1-33 (198)
119 cd04156 ARLTS1 ARLTS1 subfamil 98.7 6.2E-08 1.3E-12 52.1 4.7 36 10-46 1-36 (160)
120 cd04154 Arl2 Arl2 subfamily. 98.7 8.3E-08 1.8E-12 52.6 5.3 39 6-45 12-50 (173)
121 cd00876 Ras Ras family. The R 98.7 8.3E-08 1.8E-12 51.2 5.0 34 10-43 1-34 (160)
122 cd01893 Miro1 Miro1 subfamily. 98.6 6.8E-08 1.5E-12 52.6 3.9 31 9-39 1-31 (166)
123 PF08477 Miro: Miro-like prote 98.6 1.3E-07 2.8E-12 48.9 4.7 25 10-34 1-25 (119)
124 cd00879 Sar1 Sar1 subfamily. 98.6 1.6E-07 3.5E-12 52.0 5.1 38 6-44 17-54 (190)
125 PF00025 Arf: ADP-ribosylation 98.6 6.6E-08 1.4E-12 53.7 3.4 39 6-45 12-50 (175)
126 cd00878 Arf_Arl Arf (ADP-ribos 98.6 1.7E-07 3.6E-12 50.4 4.8 37 10-47 1-37 (158)
127 cd04151 Arl1 Arl1 subfamily. 98.6 1.6E-07 3.5E-12 50.7 4.7 36 10-46 1-36 (158)
128 smart00178 SAR Sar1p-like memb 98.6 2.2E-07 4.7E-12 51.7 5.1 39 5-44 14-52 (184)
129 KOG0096 GTPase Ran/TC4/GSP1 (n 98.5 1.7E-07 3.8E-12 53.7 4.5 42 7-48 9-50 (216)
130 KOG0393 Ras-related small GTPa 98.5 3.8E-08 8.1E-13 56.4 1.6 45 7-51 3-47 (198)
131 cd04160 Arfrp1 Arfrp1 subfamil 98.5 3.2E-07 6.9E-12 49.6 4.7 38 10-47 1-44 (167)
132 cd04155 Arl3 Arl3 subfamily. 98.5 4.6E-07 1E-11 49.3 5.3 39 6-45 12-50 (173)
133 PRK04213 GTP-binding protein; 98.5 6.9E-07 1.5E-11 50.0 5.7 36 7-42 8-43 (201)
134 PRK00454 engB GTP-binding prot 98.5 7.2E-07 1.6E-11 49.5 5.4 37 7-43 23-59 (196)
135 TIGR03598 GTPase_YsxC ribosome 98.4 1.2E-06 2.5E-11 48.5 5.6 38 6-43 16-53 (179)
136 cd01850 CDC_Septin CDC/Septin. 98.4 1.7E-06 3.7E-11 51.4 6.5 43 7-49 3-55 (276)
137 cd01876 YihA_EngB The YihA (En 98.3 1.7E-06 3.8E-11 46.0 4.5 35 10-44 1-35 (170)
138 KOG0073 GTP-binding ADP-ribosy 98.3 2.4E-06 5.3E-11 48.1 4.9 45 6-53 14-58 (185)
139 KOG0071 GTP-binding ADP-ribosy 98.3 1.9E-06 4.1E-11 47.8 4.3 48 6-56 15-62 (180)
140 cd01878 HflX HflX subfamily. 98.3 2.9E-06 6.3E-11 47.6 5.1 29 6-34 39-67 (204)
141 KOG4423 GTP-binding protein-li 98.2 3.9E-08 8.6E-13 56.4 -3.0 43 6-48 23-65 (229)
142 cd04171 SelB SelB subfamily. 98.2 5.4E-06 1.2E-10 44.4 5.0 36 10-45 2-42 (164)
143 KOG0083 GTPase Rab26/Rab37, sm 98.2 1.3E-07 2.9E-12 52.1 -1.8 38 13-50 2-40 (192)
144 cd04104 p47_IIGP_like p47 (47- 98.2 3.6E-06 7.8E-11 47.5 3.9 29 9-37 2-30 (197)
145 cd01897 NOG NOG1 is a nucleola 98.1 9.7E-06 2.1E-10 43.8 5.0 25 10-34 2-26 (168)
146 KOG1673 Ras GTPases [General f 98.1 8.3E-07 1.8E-11 50.0 0.7 44 7-50 19-62 (205)
147 cd04105 SR_beta Signal recogni 98.1 4.4E-06 9.5E-11 47.5 3.6 31 10-40 2-32 (203)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 98.1 1.1E-05 2.4E-10 43.5 5.0 32 10-41 2-33 (168)
149 cd01891 TypA_BipA TypA (tyrosi 98.1 7.9E-06 1.7E-10 45.7 4.2 28 9-36 3-32 (194)
150 cd04164 trmE TrmE (MnmE, ThdF, 98.1 2E-05 4.2E-10 41.8 5.4 25 9-33 2-26 (157)
151 cd01879 FeoB Ferrous iron tran 98.0 8.5E-06 1.8E-10 43.4 3.3 34 13-46 1-34 (158)
152 PF10662 PduV-EutP: Ethanolami 98.0 2.2E-05 4.9E-10 43.1 4.6 37 10-48 3-39 (143)
153 PRK15494 era GTPase Era; Provi 98.0 3.1E-05 6.7E-10 47.2 5.4 28 7-34 51-78 (339)
154 TIGR00450 mnmE_trmE_thdF tRNA 97.9 4.4E-05 9.6E-10 48.1 6.0 43 7-50 202-246 (442)
155 cd01895 EngA2 EngA2 subfamily. 97.9 3.6E-05 7.7E-10 41.2 4.8 26 8-33 2-27 (174)
156 cd00882 Ras_like_GTPase Ras-li 97.9 2.7E-05 5.9E-10 40.1 4.1 37 13-50 1-38 (157)
157 cd04163 Era Era subfamily. Er 97.9 1.9E-05 4E-10 41.9 3.5 26 8-33 3-28 (168)
158 cd01856 YlqF YlqF. Proteins o 97.9 8.1E-05 1.8E-09 41.1 5.7 28 7-34 114-141 (171)
159 PF01926 MMR_HSR1: 50S ribosom 97.9 2.1E-05 4.5E-10 40.7 3.0 22 10-31 1-22 (116)
160 PRK03003 GTP-binding protein D 97.8 4.9E-05 1.1E-09 48.0 5.1 42 7-48 210-252 (472)
161 KOG0075 GTP-binding ADP-ribosy 97.8 2.5E-06 5.5E-11 47.6 -0.5 46 6-53 18-63 (186)
162 KOG1707 Predicted Ras related/ 97.8 3.5E-05 7.5E-10 50.2 4.0 33 6-38 7-39 (625)
163 cd01889 SelB_euk SelB subfamil 97.8 5.4E-05 1.2E-09 42.2 4.1 22 9-30 1-22 (192)
164 PF00735 Septin: Septin; Inte 97.8 3.9E-05 8.5E-10 45.9 3.5 28 7-34 3-30 (281)
165 PRK15467 ethanolamine utilizat 97.7 8.4E-05 1.8E-09 40.7 4.5 35 10-46 3-37 (158)
166 cd01853 Toc34_like Toc34-like 97.7 0.00014 3E-09 42.9 5.6 29 5-33 28-56 (249)
167 cd01890 LepA LepA subfamily. 97.7 2.7E-05 5.8E-10 42.5 2.3 22 10-31 2-23 (179)
168 cd01859 MJ1464 MJ1464. This f 97.7 0.00018 4E-09 38.9 5.4 38 7-45 100-137 (156)
169 TIGR03156 GTP_HflX GTP-binding 97.7 0.00011 2.4E-09 45.1 4.9 28 7-34 188-215 (351)
170 cd00881 GTP_translation_factor 97.7 5.4E-05 1.2E-09 41.3 3.3 28 10-37 1-28 (189)
171 COG0563 Adk Adenylate kinase a 97.7 4.1E-05 8.8E-10 43.2 2.7 23 9-31 1-23 (178)
172 cd01898 Obg Obg subfamily. Th 97.7 4.9E-05 1.1E-09 41.0 2.9 23 10-32 2-24 (170)
173 PRK03003 GTP-binding protein D 97.7 0.00019 4E-09 45.4 5.8 26 8-33 38-63 (472)
174 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 0.00016 3.4E-09 38.8 4.8 25 10-34 85-109 (141)
175 PF03193 DUF258: Protein of un 97.7 6E-05 1.3E-09 42.1 3.1 23 10-32 37-59 (161)
176 PF02421 FeoB_N: Ferrous iron 97.6 0.00015 3.3E-09 40.3 4.6 38 9-46 1-38 (156)
177 PRK05291 trmE tRNA modificatio 97.6 0.00021 4.5E-09 45.1 5.2 26 8-33 215-240 (449)
178 PF13207 AAA_17: AAA domain; P 97.6 7.9E-05 1.7E-09 38.6 2.8 22 10-31 1-22 (121)
179 PRK00093 GTP-binding protein D 97.6 0.00018 3.9E-09 44.7 4.8 25 9-33 2-26 (435)
180 TIGR00436 era GTP-binding prot 97.6 8.5E-05 1.8E-09 43.8 3.2 24 10-33 2-25 (270)
181 cd01899 Ygr210 Ygr210 subfamil 97.6 0.00012 2.5E-09 44.6 3.8 36 11-46 1-42 (318)
182 PRK08118 topology modulation p 97.6 8.9E-05 1.9E-09 41.2 3.0 22 9-30 2-23 (167)
183 PF09439 SRPRB: Signal recogni 97.6 9.6E-05 2.1E-09 42.0 3.0 29 9-37 4-32 (181)
184 PRK07261 topology modulation p 97.5 9.9E-05 2.2E-09 41.1 3.0 22 9-30 1-22 (171)
185 TIGR00991 3a0901s02IAP34 GTP-b 97.5 0.00013 2.8E-09 44.5 3.6 28 5-32 35-62 (313)
186 PRK09602 translation-associate 97.5 0.00018 3.8E-09 45.0 4.1 37 9-45 2-44 (396)
187 PRK11058 GTPase HflX; Provisio 97.5 0.00022 4.8E-09 44.9 4.6 25 9-33 198-222 (426)
188 cd04165 GTPBP1_like GTPBP1-lik 97.5 0.00014 2.9E-09 42.2 3.2 26 10-35 1-26 (224)
189 COG0218 Predicted GTPase [Gene 97.5 0.00031 6.7E-09 40.6 4.4 36 7-42 23-58 (200)
190 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00018 3.9E-09 39.1 3.2 26 8-33 102-127 (157)
191 PF13671 AAA_33: AAA domain; P 97.4 0.00014 3E-09 38.6 2.6 19 11-29 2-20 (143)
192 cd01881 Obg_like The Obg-like 97.4 0.00016 3.6E-09 39.0 3.0 21 13-33 1-21 (176)
193 cd01896 DRG The developmentall 97.4 0.00053 1.1E-08 39.9 5.1 23 10-32 2-24 (233)
194 cd01894 EngA1 EngA1 subfamily. 97.4 0.00012 2.5E-09 38.8 2.2 21 12-32 1-21 (157)
195 PF04548 AIG1: AIG1 family; I 97.4 0.00028 6.1E-09 40.4 3.8 26 9-34 1-26 (212)
196 cd01852 AIG1 AIG1 (avrRpt2-ind 97.4 0.00056 1.2E-08 38.4 4.8 25 9-33 1-25 (196)
197 PRK00089 era GTPase Era; Revie 97.4 0.00022 4.7E-09 42.2 3.2 26 8-33 5-30 (292)
198 PRK09518 bifunctional cytidyla 97.3 0.00061 1.3E-08 45.1 5.0 26 8-33 450-475 (712)
199 smart00382 AAA ATPases associa 97.3 0.00033 7.2E-09 35.8 3.1 27 9-35 3-29 (148)
200 PF13191 AAA_16: AAA ATPase do 97.3 0.00021 4.5E-09 39.1 2.4 23 8-30 24-46 (185)
201 TIGR03594 GTPase_EngA ribosome 97.3 0.0007 1.5E-08 41.9 4.9 24 10-33 1-24 (429)
202 PF00350 Dynamin_N: Dynamin fa 97.3 0.00045 9.8E-09 37.5 3.6 23 11-33 1-23 (168)
203 PRK00093 GTP-binding protein D 97.3 0.0015 3.3E-08 40.6 6.2 26 7-32 172-197 (435)
204 PRK06217 hypothetical protein; 97.3 0.00037 7.9E-09 38.9 3.2 23 9-31 2-24 (183)
205 PF00004 AAA: ATPase family as 97.3 0.00033 7.1E-09 36.3 2.8 21 11-31 1-21 (132)
206 PF05729 NACHT: NACHT domain 97.3 0.00033 7.1E-09 37.5 2.8 21 11-31 3-23 (166)
207 PRK12288 GTPase RsgA; Reviewed 97.3 0.0003 6.4E-09 43.3 2.8 22 11-32 208-229 (347)
208 PF05049 IIGP: Interferon-indu 97.3 0.00039 8.5E-09 43.4 3.4 25 7-31 34-58 (376)
209 PF13401 AAA_22: AAA domain; P 97.2 0.00033 7.1E-09 36.5 2.5 23 10-32 6-28 (131)
210 PF07728 AAA_5: AAA domain (dy 97.2 0.00033 7.2E-09 37.2 2.6 20 11-30 2-21 (139)
211 TIGR00475 selB selenocysteine- 97.2 0.001 2.2E-08 43.3 5.1 38 10-47 2-42 (581)
212 PF03266 NTPase_1: NTPase; In 97.2 0.00043 9.3E-09 38.7 3.0 21 10-30 1-21 (168)
213 PRK10078 ribose 1,5-bisphospho 97.2 0.0004 8.7E-09 38.8 2.9 22 10-31 4-25 (186)
214 TIGR00487 IF-2 translation ini 97.2 0.0014 3.1E-08 42.8 5.7 34 8-41 87-120 (587)
215 COG1126 GlnQ ABC-type polar am 97.2 0.00055 1.2E-08 40.4 3.5 26 10-35 30-55 (240)
216 cd00009 AAA The AAA+ (ATPases 97.2 0.00041 8.9E-09 35.8 2.8 24 9-32 20-43 (151)
217 TIGR03594 GTPase_EngA ribosome 97.2 0.002 4.3E-08 39.9 6.0 27 7-33 171-197 (429)
218 KOG0074 GTP-binding ADP-ribosy 97.2 0.0011 2.4E-08 37.1 4.3 46 5-53 14-59 (185)
219 TIGR02322 phosphon_PhnN phosph 97.2 0.00047 1E-08 38.1 2.9 22 10-31 3-24 (179)
220 PRK14738 gmk guanylate kinase; 97.2 0.00076 1.6E-08 38.5 3.7 25 7-31 12-36 (206)
221 PF13173 AAA_14: AAA domain 97.1 0.00055 1.2E-08 36.2 2.9 23 11-33 5-27 (128)
222 cd00071 GMPK Guanosine monopho 97.1 0.00056 1.2E-08 36.8 2.9 21 11-31 2-22 (137)
223 PF13521 AAA_28: AAA domain; P 97.1 0.00037 8.1E-09 38.0 2.2 22 10-31 1-22 (163)
224 TIGR03263 guanyl_kin guanylate 97.1 0.00058 1.3E-08 37.6 2.9 22 10-31 3-24 (180)
225 PRK09554 feoB ferrous iron tra 97.1 0.0024 5.1E-08 43.0 6.1 26 8-33 3-28 (772)
226 COG1116 TauB ABC-type nitrate/ 97.1 0.00076 1.6E-08 40.1 3.4 23 11-33 32-54 (248)
227 PRK03839 putative kinase; Prov 97.1 0.00064 1.4E-08 37.7 3.0 22 10-31 2-23 (180)
228 TIGR00437 feoB ferrous iron tr 97.1 0.0013 2.8E-08 42.9 4.8 37 15-51 1-37 (591)
229 TIGR00157 ribosome small subun 97.1 0.00052 1.1E-08 40.2 2.7 22 10-31 122-143 (245)
230 COG3839 MalK ABC-type sugar tr 97.1 0.00075 1.6E-08 41.6 3.5 24 11-34 32-55 (338)
231 cd04178 Nucleostemin_like Nucl 97.1 0.00071 1.5E-08 37.9 3.1 26 8-33 117-142 (172)
232 PRK14532 adenylate kinase; Pro 97.1 0.00067 1.5E-08 37.8 3.0 22 9-30 1-22 (188)
233 PRK14737 gmk guanylate kinase; 97.1 0.00063 1.4E-08 38.5 2.9 23 9-31 5-27 (186)
234 PF04665 Pox_A32: Poxvirus A32 97.1 0.00065 1.4E-08 40.2 3.0 24 7-30 12-35 (241)
235 PF13238 AAA_18: AAA domain; P 97.1 0.00061 1.3E-08 35.2 2.6 21 11-31 1-21 (129)
236 TIGR03596 GTPase_YlqF ribosome 97.1 0.0025 5.3E-08 37.9 5.4 27 7-33 117-143 (276)
237 cd00880 Era_like Era (E. coli 97.1 0.0015 3.2E-08 34.0 4.1 22 13-34 1-22 (163)
238 PRK12289 GTPase RsgA; Reviewed 97.1 0.00056 1.2E-08 42.2 2.7 22 11-32 175-196 (352)
239 PRK09518 bifunctional cytidyla 97.1 0.0029 6.4E-08 42.0 6.1 27 7-33 274-300 (712)
240 PF01637 Arch_ATPase: Archaeal 97.1 0.00055 1.2E-08 38.4 2.5 24 9-32 21-44 (234)
241 PRK00300 gmk guanylate kinase; 97.0 0.00074 1.6E-08 38.0 2.8 23 9-31 6-28 (205)
242 PRK13695 putative NTPase; Prov 97.0 0.0008 1.7E-08 37.2 2.9 21 9-29 1-21 (174)
243 PF00005 ABC_tran: ABC transpo 97.0 0.00077 1.7E-08 35.5 2.7 23 10-32 13-35 (137)
244 cd02019 NK Nucleoside/nucleoti 97.0 0.00092 2E-08 32.1 2.8 21 11-31 2-22 (69)
245 cd04167 Snu114p Snu114p subfam 97.0 0.00082 1.8E-08 38.2 3.0 24 10-33 2-25 (213)
246 COG1162 Predicted GTPases [Gen 97.0 0.00052 1.1E-08 41.7 2.2 22 10-31 166-187 (301)
247 KOG3883 Ras family small GTPas 97.0 0.0012 2.5E-08 37.4 3.4 40 7-46 8-49 (198)
248 COG1136 SalX ABC-type antimicr 97.0 0.0011 2.4E-08 38.9 3.5 24 10-33 33-56 (226)
249 PRK14530 adenylate kinase; Pro 97.0 0.00093 2E-08 38.1 3.1 22 9-30 4-25 (215)
250 cd01855 YqeH YqeH. YqeH is an 97.0 0.00081 1.8E-08 37.5 2.7 24 9-32 128-151 (190)
251 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00092 2E-08 36.8 2.9 20 10-29 5-24 (188)
252 COG0194 Gmk Guanylate kinase [ 97.0 0.0009 2E-08 38.4 2.8 23 10-32 6-28 (191)
253 TIGR03015 pepcterm_ATPase puta 97.0 0.00084 1.8E-08 39.0 2.8 22 10-31 45-66 (269)
254 TIGR00101 ureG urease accessor 97.0 0.0011 2.3E-08 37.9 3.1 23 9-31 2-24 (199)
255 TIGR02729 Obg_CgtA Obg family 97.0 0.0015 3.2E-08 39.9 3.9 35 9-43 158-198 (329)
256 KOG0072 GTP-binding ADP-ribosy 97.0 0.00011 2.5E-09 41.0 -0.9 47 6-55 16-62 (182)
257 PF04670 Gtr1_RagA: Gtr1/RagA 97.0 0.0023 5E-08 37.6 4.5 36 10-45 1-39 (232)
258 PRK14531 adenylate kinase; Pro 96.9 0.0011 2.5E-08 37.0 3.0 23 8-30 2-24 (183)
259 COG0486 ThdF Predicted GTPase 96.9 0.001 2.3E-08 42.4 3.1 24 8-31 217-240 (454)
260 COG3842 PotA ABC-type spermidi 96.9 0.0013 2.8E-08 40.8 3.5 25 11-35 34-58 (352)
261 PRK02496 adk adenylate kinase; 96.9 0.0014 3E-08 36.4 3.2 22 9-30 2-23 (184)
262 PRK00098 GTPase RsgA; Reviewed 96.9 0.0011 2.5E-08 39.8 3.0 23 10-32 166-188 (298)
263 PRK09563 rbgA GTPase YlqF; Rev 96.9 0.0015 3.1E-08 39.1 3.4 27 7-33 120-146 (287)
264 PF13555 AAA_29: P-loop contai 96.9 0.0015 3.3E-08 31.3 2.9 21 11-31 26-46 (62)
265 cd01428 ADK Adenylate kinase ( 96.9 0.0011 2.4E-08 36.7 2.8 21 10-30 1-21 (194)
266 PRK08233 hypothetical protein; 96.9 0.0012 2.7E-08 36.2 2.8 22 9-30 4-25 (182)
267 PTZ00088 adenylate kinase 1; P 96.9 0.0013 2.8E-08 38.4 3.0 23 8-30 6-28 (229)
268 cd02023 UMPK Uridine monophosp 96.9 0.0012 2.6E-08 37.1 2.8 20 11-30 2-21 (198)
269 PRK10751 molybdopterin-guanine 96.9 0.002 4.2E-08 36.4 3.6 22 10-31 8-29 (173)
270 TIGR01313 therm_gnt_kin carboh 96.9 0.00097 2.1E-08 36.3 2.3 21 11-31 1-21 (163)
271 PHA00729 NTP-binding motif con 96.8 0.0016 3.6E-08 38.2 3.3 22 9-30 18-39 (226)
272 COG5019 CDC3 Septin family pro 96.8 0.0036 7.8E-08 39.1 4.8 27 7-33 22-48 (373)
273 TIGR00235 udk uridine kinase. 96.8 0.0019 4.2E-08 36.6 3.4 23 8-30 6-28 (207)
274 PRK05480 uridine/cytidine kina 96.8 0.0017 3.8E-08 36.7 3.2 24 7-30 5-28 (209)
275 COG1618 Predicted nucleotide k 96.8 0.0017 3.6E-08 36.9 3.0 24 7-30 4-27 (179)
276 TIGR01351 adk adenylate kinase 96.8 0.0014 3E-08 37.3 2.8 21 10-30 1-21 (210)
277 cd01849 YlqF_related_GTPase Yl 96.8 0.0018 4E-08 35.1 3.1 26 7-32 99-124 (155)
278 PF00625 Guanylate_kin: Guanyl 96.8 0.0016 3.4E-08 36.3 2.9 20 11-30 5-24 (183)
279 TIGR00491 aIF-2 translation in 96.8 0.0027 5.8E-08 41.6 4.3 37 10-46 6-46 (590)
280 PRK13949 shikimate kinase; Pro 96.8 0.0018 3.8E-08 36.1 3.1 21 10-30 3-23 (169)
281 PF12775 AAA_7: P-loop contain 96.8 0.0019 4.2E-08 38.5 3.4 25 8-32 33-57 (272)
282 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0016 3.4E-08 36.0 2.9 20 11-30 2-21 (183)
283 cd03238 ABC_UvrA The excision 96.8 0.0015 3.2E-08 36.8 2.7 20 10-29 23-42 (176)
284 cd00820 PEPCK_HprK Phosphoenol 96.8 0.0016 3.5E-08 34.2 2.7 20 10-29 17-36 (107)
285 TIGR01393 lepA GTP-binding pro 96.8 0.0044 9.5E-08 40.6 5.2 24 8-31 3-26 (595)
286 PRK07429 phosphoribulokinase; 96.8 0.0024 5.1E-08 39.1 3.7 30 1-30 1-30 (327)
287 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0025 5.4E-08 36.2 3.6 22 10-31 32-53 (218)
288 TIGR00960 3a0501s02 Type II (G 96.8 0.0026 5.6E-08 36.1 3.7 22 10-31 31-52 (216)
289 PF05783 DLIC: Dynein light in 96.8 0.0033 7.2E-08 40.3 4.5 41 7-50 24-64 (472)
290 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0026 5.7E-08 35.9 3.7 23 10-32 28-50 (205)
291 smart00072 GuKc Guanylate kina 96.8 0.0018 3.9E-08 36.2 2.9 22 11-32 5-26 (184)
292 PRK00279 adk adenylate kinase; 96.8 0.0019 4.1E-08 36.9 3.0 22 9-30 1-22 (215)
293 cd01854 YjeQ_engC YjeQ/EngC. 96.7 0.0019 4.2E-08 38.6 3.1 25 9-33 162-186 (287)
294 cd03225 ABC_cobalt_CbiO_domain 96.7 0.0026 5.6E-08 36.0 3.5 22 10-31 29-50 (211)
295 COG3638 ABC-type phosphate/pho 96.7 0.0017 3.8E-08 38.7 2.8 20 11-30 33-52 (258)
296 TIGR03608 L_ocin_972_ABC putat 96.7 0.003 6.4E-08 35.5 3.7 23 10-32 26-48 (206)
297 PF13479 AAA_24: AAA domain 96.7 0.0018 3.8E-08 37.1 2.8 22 7-28 2-23 (213)
298 PRK05057 aroK shikimate kinase 96.7 0.0021 4.6E-08 35.8 3.0 22 9-30 5-26 (172)
299 PF00910 RNA_helicase: RNA hel 96.7 0.0015 3.4E-08 33.7 2.3 20 11-30 1-20 (107)
300 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0028 6E-08 35.7 3.5 24 10-33 27-50 (177)
301 cd03269 ABC_putative_ATPase Th 96.7 0.0031 6.7E-08 35.6 3.7 23 10-32 28-50 (210)
302 cd03292 ABC_FtsE_transporter F 96.7 0.0031 6.7E-08 35.6 3.7 22 10-31 29-50 (214)
303 TIGR02315 ABC_phnC phosphonate 96.7 0.0029 6.3E-08 36.4 3.7 22 10-31 30-51 (243)
304 PRK13540 cytochrome c biogenes 96.7 0.0032 6.8E-08 35.5 3.7 23 10-32 29-51 (200)
305 cd01124 KaiC KaiC is a circadi 96.7 0.0019 4.2E-08 35.5 2.8 21 11-31 2-22 (187)
306 TIGR02673 FtsE cell division A 96.7 0.0032 6.8E-08 35.7 3.7 22 10-31 30-51 (214)
307 TIGR02868 CydC thiol reductant 96.7 0.0026 5.7E-08 40.4 3.7 22 10-31 363-384 (529)
308 cd03260 ABC_PstB_phosphate_tra 96.7 0.0034 7.4E-08 35.9 3.8 23 10-32 28-50 (227)
309 cd02021 GntK Gluconate kinase 96.7 0.0021 4.4E-08 34.5 2.8 21 11-31 2-22 (150)
310 cd03261 ABC_Org_Solvent_Resist 96.7 0.0031 6.8E-08 36.2 3.7 23 10-32 28-50 (235)
311 cd01120 RecA-like_NTPases RecA 96.7 0.0021 4.4E-08 34.1 2.7 21 11-31 2-22 (165)
312 cd03293 ABC_NrtD_SsuB_transpor 96.7 0.0029 6.4E-08 36.0 3.5 23 10-32 32-54 (220)
313 PRK15177 Vi polysaccharide exp 96.7 0.0028 6.1E-08 36.2 3.4 23 10-32 15-37 (213)
314 cd03224 ABC_TM1139_LivF_branch 96.7 0.0032 6.9E-08 35.8 3.6 22 10-31 28-49 (222)
315 TIGR01166 cbiO cobalt transpor 96.7 0.0031 6.6E-08 35.2 3.5 22 10-31 20-41 (190)
316 cd03301 ABC_MalK_N The N-termi 96.7 0.0036 7.7E-08 35.4 3.7 23 10-32 28-50 (213)
317 cd03218 ABC_YhbG The ABC trans 96.7 0.0035 7.5E-08 35.9 3.7 23 10-32 28-50 (232)
318 smart00053 DYNc Dynamin, GTPas 96.7 0.0036 7.7E-08 36.9 3.8 26 8-33 26-51 (240)
319 cd03262 ABC_HisP_GlnQ_permease 96.7 0.0035 7.7E-08 35.4 3.7 23 10-32 28-50 (213)
320 cd03257 ABC_NikE_OppD_transpor 96.7 0.0035 7.5E-08 35.7 3.7 23 10-32 33-55 (228)
321 TIGR02211 LolD_lipo_ex lipopro 96.7 0.0036 7.8E-08 35.6 3.7 22 10-31 33-54 (221)
322 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.0023 4.9E-08 36.3 2.9 23 9-31 39-61 (226)
323 TIGR03597 GTPase_YqeH ribosome 96.7 0.0027 5.9E-08 39.1 3.4 23 9-31 155-177 (360)
324 cd03216 ABC_Carb_Monos_I This 96.7 0.004 8.6E-08 34.2 3.7 24 10-33 28-51 (163)
325 cd03264 ABC_drug_resistance_li 96.6 0.0033 7.1E-08 35.6 3.5 22 10-31 27-48 (211)
326 cd03263 ABC_subfamily_A The AB 96.6 0.0033 7.2E-08 35.7 3.5 23 10-32 30-52 (220)
327 cd03259 ABC_Carb_Solutes_like 96.6 0.0038 8.2E-08 35.4 3.7 22 10-31 28-49 (213)
328 PF03029 ATP_bind_1: Conserved 96.6 0.0013 2.7E-08 38.6 1.8 18 13-30 1-18 (238)
329 KOG1707 Predicted Ras related/ 96.6 0.007 1.5E-07 39.9 5.2 44 6-49 423-466 (625)
330 cd04170 EF-G_bact Elongation f 96.6 0.0021 4.6E-08 37.8 2.7 21 10-30 1-21 (268)
331 cd03266 ABC_NatA_sodium_export 96.6 0.0037 8.1E-08 35.5 3.6 23 10-32 33-55 (218)
332 cd03235 ABC_Metallic_Cations A 96.6 0.0036 7.8E-08 35.4 3.6 22 10-31 27-48 (213)
333 PRK10908 cell division protein 96.6 0.0039 8.5E-08 35.5 3.7 23 10-32 30-52 (222)
334 PRK14528 adenylate kinase; Pro 96.6 0.0028 6.1E-08 35.6 3.1 21 9-29 2-22 (186)
335 cd03256 ABC_PhnC_transporter A 96.6 0.0034 7.4E-08 36.1 3.5 23 10-32 29-51 (241)
336 TIGR03864 PQQ_ABC_ATP ABC tran 96.6 0.0039 8.3E-08 35.9 3.7 23 10-32 29-51 (236)
337 PF03205 MobB: Molybdopterin g 96.6 0.0022 4.7E-08 34.9 2.5 22 10-31 2-23 (140)
338 PRK11629 lolD lipoprotein tran 96.6 0.0039 8.5E-08 35.8 3.7 23 10-32 37-59 (233)
339 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0027 5.9E-08 34.5 2.9 22 10-31 24-45 (133)
340 PRK11124 artP arginine transpo 96.6 0.0039 8.5E-08 36.0 3.7 23 10-32 30-52 (242)
341 cd03265 ABC_DrrA DrrA is the A 96.6 0.004 8.7E-08 35.5 3.7 22 10-31 28-49 (220)
342 cd00227 CPT Chloramphenicol (C 96.6 0.0026 5.7E-08 35.2 2.9 22 10-31 4-25 (175)
343 cd03297 ABC_ModC_molybdenum_tr 96.6 0.0037 8.1E-08 35.5 3.5 23 10-32 25-47 (214)
344 TIGR01189 ccmA heme ABC export 96.6 0.0043 9.3E-08 34.9 3.7 23 10-32 28-50 (198)
345 PRK13541 cytochrome c biogenes 96.6 0.0042 9.2E-08 34.8 3.7 23 10-32 28-50 (195)
346 cd01130 VirB11-like_ATPase Typ 96.6 0.003 6.6E-08 35.4 3.0 23 9-31 26-48 (186)
347 PRK06547 hypothetical protein; 96.6 0.0034 7.3E-08 35.2 3.2 25 7-31 14-38 (172)
348 cd03268 ABC_BcrA_bacitracin_re 96.6 0.0038 8.3E-08 35.2 3.5 23 10-32 28-50 (208)
349 cd03219 ABC_Mj1267_LivG_branch 96.6 0.0039 8.5E-08 35.7 3.6 22 10-31 28-49 (236)
350 cd03214 ABC_Iron-Siderophores_ 96.6 0.0045 9.9E-08 34.4 3.7 23 10-32 27-49 (180)
351 PRK11248 tauB taurine transpor 96.6 0.0042 9.2E-08 36.4 3.7 23 10-32 29-51 (255)
352 cd01128 rho_factor Transcripti 96.6 0.0031 6.7E-08 37.3 3.1 24 10-33 18-41 (249)
353 PRK06762 hypothetical protein; 96.6 0.003 6.4E-08 34.5 2.9 21 10-30 4-24 (166)
354 PF00503 G-alpha: G-protein al 96.6 0.003 6.5E-08 39.1 3.2 24 6-29 56-79 (389)
355 KOG2655 Septin family protein 96.6 0.0029 6.2E-08 39.5 3.1 27 8-34 21-47 (366)
356 cd01918 HprK_C HprK/P, the bif 96.6 0.0078 1.7E-07 33.3 4.5 24 9-32 15-38 (149)
357 PF00448 SRP54: SRP54-type pro 96.6 0.0023 5E-08 36.5 2.5 20 10-29 3-22 (196)
358 PRK00131 aroK shikimate kinase 96.6 0.0032 7E-08 34.1 3.0 22 9-30 5-26 (175)
359 COG4525 TauB ABC-type taurine 96.6 0.0026 5.7E-08 37.5 2.7 21 10-30 33-53 (259)
360 PRK00625 shikimate kinase; Pro 96.6 0.003 6.4E-08 35.5 2.9 21 10-30 2-22 (173)
361 cd03296 ABC_CysA_sulfate_impor 96.6 0.0044 9.5E-08 35.8 3.7 23 10-32 30-52 (239)
362 cd03229 ABC_Class3 This class 96.6 0.0048 1E-07 34.2 3.7 22 10-31 28-49 (178)
363 cd03258 ABC_MetN_methionine_tr 96.6 0.004 8.7E-08 35.7 3.5 23 10-32 33-55 (233)
364 COG1159 Era GTPase [General fu 96.6 0.0032 7E-08 38.3 3.2 27 7-33 5-31 (298)
365 COG2884 FtsE Predicted ATPase 96.6 0.0033 7.2E-08 36.7 3.1 23 11-33 31-53 (223)
366 PTZ00258 GTP-binding protein; 96.6 0.0042 9.1E-08 39.0 3.8 26 7-32 20-45 (390)
367 cd01131 PilT Pilus retraction 96.6 0.0028 6.1E-08 35.9 2.8 20 11-30 4-23 (198)
368 PRK11247 ssuB aliphatic sulfon 96.6 0.0045 9.7E-08 36.5 3.7 23 10-32 40-62 (257)
369 TIGR01978 sufC FeS assembly AT 96.6 0.0032 7E-08 36.2 3.1 22 10-31 28-49 (243)
370 PRK14526 adenylate kinase; Pro 96.6 0.0032 6.9E-08 36.3 3.0 22 9-30 1-22 (211)
371 PRK13538 cytochrome c biogenes 96.5 0.0048 1E-07 34.9 3.7 23 10-32 29-51 (204)
372 TIGR03410 urea_trans_UrtE urea 96.5 0.0047 1E-07 35.4 3.7 23 10-32 28-50 (230)
373 PRK13851 type IV secretion sys 96.5 0.0034 7.3E-08 38.7 3.2 25 8-32 162-186 (344)
374 cd02025 PanK Pantothenate kina 96.5 0.0026 5.7E-08 36.8 2.6 20 11-30 2-21 (220)
375 CHL00189 infB translation init 96.5 0.0086 1.9E-07 40.3 5.3 31 8-38 244-274 (742)
376 COG1160 Predicted GTPases [Gen 96.5 0.0036 7.9E-08 39.9 3.4 25 9-33 4-28 (444)
377 PRK13539 cytochrome c biogenes 96.5 0.0051 1.1E-07 34.9 3.7 23 10-32 30-52 (207)
378 cd00464 SK Shikimate kinase (S 96.5 0.0031 6.8E-08 33.7 2.7 21 10-30 1-21 (154)
379 cd03215 ABC_Carb_Monos_II This 96.5 0.0051 1.1E-07 34.2 3.7 23 10-32 28-50 (182)
380 cd03237 ABC_RNaseL_inhibitor_d 96.5 0.0044 9.5E-08 36.3 3.5 23 10-32 27-49 (246)
381 PRK13947 shikimate kinase; Pro 96.5 0.0036 7.9E-08 34.2 3.0 21 10-30 3-23 (171)
382 PRK10584 putative ABC transpor 96.5 0.0046 9.9E-08 35.4 3.5 23 10-32 38-60 (228)
383 cd03247 ABCC_cytochrome_bd The 96.5 0.0054 1.2E-07 34.0 3.7 23 10-32 30-52 (178)
384 PRK08903 DnaA regulatory inact 96.5 0.003 6.6E-08 36.1 2.8 22 10-31 44-65 (227)
385 TIGR02881 spore_V_K stage V sp 96.5 0.0037 8E-08 36.7 3.2 23 8-30 42-64 (261)
386 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0048 1E-07 33.4 3.4 23 10-32 28-50 (144)
387 PRK13796 GTPase YqeH; Provisio 96.5 0.0035 7.7E-08 38.7 3.2 23 9-31 161-183 (365)
388 PRK10895 lipopolysaccharide AB 96.5 0.0052 1.1E-07 35.5 3.7 23 10-32 31-53 (241)
389 PRK14529 adenylate kinase; Pro 96.5 0.0035 7.7E-08 36.6 3.0 22 9-30 1-22 (223)
390 TIGR02323 CP_lyasePhnK phospho 96.5 0.0052 1.1E-07 35.7 3.7 23 10-32 31-53 (253)
391 TIGR00635 ruvB Holliday juncti 96.5 0.0032 7E-08 37.3 2.9 21 10-30 32-52 (305)
392 PRK14267 phosphate ABC transpo 96.5 0.0057 1.2E-07 35.5 3.8 23 10-32 32-54 (253)
393 cd03298 ABC_ThiQ_thiamine_tran 96.5 0.0056 1.2E-07 34.6 3.7 22 10-31 26-47 (211)
394 PRK10247 putative ABC transpor 96.5 0.0054 1.2E-07 35.2 3.7 22 10-31 35-56 (225)
395 PRK14249 phosphate ABC transpo 96.5 0.0063 1.4E-07 35.3 4.0 24 10-33 32-55 (251)
396 cd03254 ABCC_Glucan_exporter_l 96.5 0.0055 1.2E-07 35.0 3.7 23 10-32 31-53 (229)
397 cd03231 ABC_CcmA_heme_exporter 96.5 0.0058 1.3E-07 34.5 3.7 23 10-32 28-50 (201)
398 PRK11701 phnK phosphonate C-P 96.5 0.0054 1.2E-07 35.8 3.7 23 10-32 34-56 (258)
399 PRK13638 cbiO cobalt transport 96.5 0.0051 1.1E-07 36.2 3.6 22 10-31 29-50 (271)
400 PF00485 PRK: Phosphoribulokin 96.5 0.0032 6.9E-08 35.4 2.6 20 11-30 2-21 (194)
401 PRK13649 cbiO cobalt transport 96.5 0.0052 1.1E-07 36.3 3.6 23 10-32 35-57 (280)
402 PRK13543 cytochrome c biogenes 96.5 0.0056 1.2E-07 34.9 3.6 22 10-31 39-60 (214)
403 TIGR01184 ntrCD nitrate transp 96.5 0.0058 1.3E-07 35.2 3.7 23 10-32 13-35 (230)
404 cd03267 ABC_NatA_like Similar 96.5 0.0057 1.2E-07 35.4 3.7 23 10-32 49-71 (236)
405 PRK12297 obgE GTPase CgtA; Rev 96.5 0.005 1.1E-07 38.9 3.7 23 10-32 160-182 (424)
406 TIGR00073 hypB hydrogenase acc 96.4 0.0044 9.4E-08 35.2 3.1 25 7-31 21-45 (207)
407 cd03245 ABCC_bacteriocin_expor 96.4 0.006 1.3E-07 34.7 3.7 23 10-32 32-54 (220)
408 cd03223 ABCD_peroxisomal_ALDP 96.4 0.0064 1.4E-07 33.5 3.7 22 10-31 29-50 (166)
409 KOG1423 Ras-like GTPase ERA [C 96.4 0.0042 9.1E-08 38.5 3.1 30 5-34 69-98 (379)
410 PHA02530 pseT polynucleotide k 96.4 0.0036 7.8E-08 37.1 2.8 21 10-30 4-24 (300)
411 cd03246 ABCC_Protease_Secretio 96.4 0.0056 1.2E-07 33.8 3.4 23 10-32 30-52 (173)
412 PRK11264 putative amino-acid A 96.4 0.0061 1.3E-07 35.3 3.7 22 10-31 31-52 (250)
413 PRK13645 cbiO cobalt transport 96.4 0.0052 1.1E-07 36.5 3.5 23 10-32 39-61 (289)
414 TIGR03411 urea_trans_UrtD urea 96.4 0.006 1.3E-07 35.2 3.7 23 10-32 30-52 (242)
415 PRK05541 adenylylsulfate kinas 96.4 0.004 8.7E-08 34.3 2.9 22 8-29 7-28 (176)
416 cd03295 ABC_OpuCA_Osmoprotecti 96.4 0.0062 1.4E-07 35.2 3.7 22 10-31 29-50 (242)
417 cd04166 CysN_ATPS CysN_ATPS su 96.4 0.0033 7.2E-08 35.7 2.5 21 10-30 1-21 (208)
418 cd03252 ABCC_Hemolysin The ABC 96.4 0.006 1.3E-07 35.1 3.6 23 10-32 30-52 (237)
419 COG1117 PstB ABC-type phosphat 96.4 0.0031 6.7E-08 37.4 2.4 19 12-30 37-55 (253)
420 PRK11300 livG leucine/isoleuci 96.4 0.0058 1.3E-07 35.5 3.6 22 10-31 33-54 (255)
421 PRK14250 phosphate ABC transpo 96.4 0.0063 1.4E-07 35.2 3.7 22 10-31 31-52 (241)
422 PRK14242 phosphate transporter 96.4 0.0044 9.6E-08 36.0 3.1 22 10-31 34-55 (253)
423 PF07724 AAA_2: AAA domain (Cd 96.4 0.0055 1.2E-07 34.3 3.3 26 8-33 3-28 (171)
424 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0069 1.5E-07 33.4 3.7 22 10-31 28-49 (173)
425 PRK10771 thiQ thiamine transpo 96.4 0.0062 1.3E-07 35.0 3.6 23 10-32 27-49 (232)
426 cd03253 ABCC_ATM1_transporter 96.4 0.0062 1.3E-07 34.9 3.6 23 10-32 29-51 (236)
427 PRK15056 manganese/iron transp 96.4 0.0062 1.3E-07 35.9 3.7 22 10-31 35-56 (272)
428 cd03294 ABC_Pro_Gly_Bertaine T 96.4 0.0057 1.2E-07 36.1 3.5 23 10-32 52-74 (269)
429 TIGR02770 nickel_nikD nickel i 96.4 0.0041 8.8E-08 35.7 2.8 24 10-33 14-37 (230)
430 PLN02200 adenylate kinase fami 96.4 0.0051 1.1E-07 35.9 3.3 23 8-30 43-65 (234)
431 PRK15112 antimicrobial peptide 96.4 0.0063 1.4E-07 35.8 3.7 23 10-32 41-63 (267)
432 PRK09270 nucleoside triphospha 96.4 0.0053 1.2E-07 35.4 3.3 24 7-30 32-55 (229)
433 PF06745 KaiC: KaiC; InterPro 96.4 0.0037 8E-08 35.8 2.6 22 10-31 21-42 (226)
434 TIGR00993 3a0901s04IAP86 chlor 96.4 0.0054 1.2E-07 41.2 3.6 27 6-32 116-142 (763)
435 PRK14247 phosphate ABC transpo 96.4 0.0047 1E-07 35.8 3.1 22 10-31 31-52 (250)
436 PRK09601 GTP-binding protein Y 96.4 0.0057 1.2E-07 38.1 3.6 24 9-32 3-26 (364)
437 COG3840 ThiQ ABC-type thiamine 96.4 0.0058 1.3E-07 35.6 3.4 26 10-35 27-52 (231)
438 PRK14527 adenylate kinase; Pro 96.4 0.0045 9.7E-08 34.7 2.9 21 9-29 7-27 (191)
439 PRK11650 ugpC glycerol-3-phosp 96.4 0.0055 1.2E-07 37.8 3.5 23 11-33 33-55 (356)
440 TIGR03005 ectoine_ehuA ectoine 96.4 0.0067 1.4E-07 35.3 3.7 22 10-31 28-49 (252)
441 PRK11176 lipid transporter ATP 96.4 0.0056 1.2E-07 39.3 3.6 24 10-33 371-394 (582)
442 PRK14273 phosphate ABC transpo 96.4 0.0049 1.1E-07 35.8 3.1 23 10-32 35-57 (254)
443 TIGR02769 nickel_nikE nickel i 96.4 0.0067 1.4E-07 35.6 3.7 23 10-32 39-61 (265)
444 PF00009 GTP_EFTU: Elongation 96.4 0.005 1.1E-07 34.3 3.0 24 8-31 3-26 (188)
445 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0046 1E-07 37.7 3.1 23 8-30 162-184 (325)
446 COG1161 Predicted GTPases [Gen 96.4 0.012 2.7E-07 35.8 4.9 26 8-33 132-157 (322)
447 TIGR01277 thiQ thiamine ABC tr 96.4 0.0071 1.5E-07 34.3 3.7 23 10-32 26-48 (213)
448 PRK14239 phosphate transporter 96.4 0.0049 1.1E-07 35.7 3.1 22 10-31 33-54 (252)
449 cd01672 TMPK Thymidine monopho 96.4 0.0043 9.4E-08 34.2 2.7 20 11-30 3-22 (200)
450 COG1118 CysA ABC-type sulfate/ 96.4 0.0054 1.2E-07 37.9 3.3 25 11-35 31-55 (345)
451 cd03236 ABC_RNaseL_inhibitor_d 96.4 0.0068 1.5E-07 35.7 3.7 23 10-32 28-50 (255)
452 COG1120 FepC ABC-type cobalami 96.4 0.0043 9.4E-08 37.1 2.9 20 11-30 31-50 (258)
453 TIGR03740 galliderm_ABC gallid 96.4 0.0072 1.6E-07 34.5 3.7 22 10-31 28-49 (223)
454 PRK12299 obgE GTPase CgtA; Rev 96.4 0.0067 1.4E-07 37.2 3.7 23 9-31 159-181 (335)
455 COG0572 Udk Uridine kinase [Nu 96.4 0.0079 1.7E-07 35.2 3.9 25 6-30 6-30 (218)
456 TIGR02203 MsbA_lipidA lipid A 96.4 0.0059 1.3E-07 39.1 3.6 24 10-33 360-383 (571)
457 TIGR02324 CP_lyasePhnL phospho 96.3 0.0065 1.4E-07 34.6 3.5 22 10-31 36-57 (224)
458 cd03232 ABC_PDR_domain2 The pl 96.3 0.0053 1.2E-07 34.5 3.1 22 10-31 35-56 (192)
459 PRK04182 cytidylate kinase; Pr 96.3 0.0053 1.1E-07 33.5 3.0 22 9-30 1-22 (180)
460 cd03251 ABCC_MsbA MsbA is an e 96.3 0.007 1.5E-07 34.7 3.6 23 10-32 30-52 (234)
461 PRK11831 putative ABC transpor 96.3 0.0069 1.5E-07 35.7 3.7 23 10-32 35-57 (269)
462 PRK14241 phosphate transporter 96.3 0.0051 1.1E-07 35.9 3.1 23 10-32 32-54 (258)
463 PRK13768 GTPase; Provisional 96.3 0.0052 1.1E-07 36.2 3.1 22 9-30 3-24 (253)
464 PRK10619 histidine/lysine/argi 96.3 0.0072 1.6E-07 35.3 3.7 23 10-32 33-55 (257)
465 PRK09544 znuC high-affinity zi 96.3 0.0072 1.6E-07 35.4 3.7 22 10-31 32-53 (251)
466 PF05496 RuvB_N: Holliday junc 96.3 0.0051 1.1E-07 36.3 3.0 23 8-30 50-72 (233)
467 PRK04040 adenylate kinase; Pro 96.3 0.0055 1.2E-07 34.7 3.1 22 9-30 3-24 (188)
468 TIGR00972 3a0107s01c2 phosphat 96.3 0.0047 1E-07 35.8 2.9 23 10-32 29-51 (247)
469 cd02028 UMPK_like Uridine mono 96.3 0.0049 1.1E-07 34.5 2.9 20 11-30 2-21 (179)
470 cd03248 ABCC_TAP TAP, the Tran 96.3 0.0074 1.6E-07 34.5 3.7 23 10-32 42-64 (226)
471 PRK15093 antimicrobial peptide 96.3 0.0045 9.7E-08 37.6 2.9 23 10-32 35-57 (330)
472 cd02027 APSK Adenosine 5'-phos 96.3 0.0051 1.1E-07 33.5 2.9 21 11-31 2-22 (149)
473 COG4917 EutP Ethanolamine util 96.3 0.004 8.7E-08 34.1 2.4 35 10-46 3-37 (148)
474 PRK10575 iron-hydroxamate tran 96.3 0.0069 1.5E-07 35.6 3.6 22 10-31 39-60 (265)
475 PRK09825 idnK D-gluconate kina 96.3 0.0048 1E-07 34.6 2.8 21 10-30 5-25 (176)
476 cd03290 ABCC_SUR1_N The SUR do 96.3 0.0068 1.5E-07 34.5 3.5 23 10-32 29-51 (218)
477 cd03234 ABCG_White The White s 96.3 0.0054 1.2E-07 35.1 3.1 23 10-32 35-57 (226)
478 cd03244 ABCC_MRP_domain2 Domai 96.3 0.0068 1.5E-07 34.4 3.5 22 10-31 32-53 (221)
479 COG1160 Predicted GTPases [Gen 96.3 0.015 3.2E-07 37.2 5.2 40 7-46 177-222 (444)
480 KOG1532 GTPase XAB1, interacts 96.3 0.0039 8.4E-08 38.3 2.5 28 7-34 18-45 (366)
481 PRK14274 phosphate ABC transpo 96.3 0.0052 1.1E-07 35.9 3.0 22 10-31 40-61 (259)
482 PRK10744 pstB phosphate transp 96.3 0.0048 1E-07 36.1 2.9 22 10-31 41-62 (260)
483 TIGR03771 anch_rpt_ABC anchore 96.3 0.0075 1.6E-07 34.6 3.6 23 10-32 8-30 (223)
484 cd03233 ABC_PDR_domain1 The pl 96.3 0.0051 1.1E-07 34.8 2.9 23 10-32 35-57 (202)
485 CHL00131 ycf16 sulfate ABC tra 96.3 0.0051 1.1E-07 35.6 3.0 22 10-31 35-56 (252)
486 PRK13646 cbiO cobalt transport 96.3 0.0075 1.6E-07 35.9 3.7 23 10-32 35-57 (286)
487 COG2274 SunT ABC-type bacterio 96.3 0.0062 1.3E-07 40.7 3.6 25 10-34 501-525 (709)
488 PRK10418 nikD nickel transport 96.3 0.0055 1.2E-07 35.7 3.1 23 10-32 31-53 (254)
489 COG1936 Predicted nucleotide k 96.3 0.005 1.1E-07 35.1 2.8 21 9-29 1-21 (180)
490 cd03228 ABCC_MRP_Like The MRP 96.3 0.0076 1.7E-07 33.2 3.5 23 10-32 30-52 (171)
491 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.3 0.0077 1.7E-07 34.6 3.6 22 10-31 50-71 (224)
492 PRK11432 fbpC ferric transport 96.3 0.0064 1.4E-07 37.4 3.5 24 10-33 34-57 (351)
493 cd00066 G-alpha G protein alph 96.3 0.0043 9.3E-08 37.6 2.7 21 9-29 1-21 (317)
494 PRK11144 modC molybdate transp 96.3 0.0073 1.6E-07 37.1 3.7 23 10-32 26-48 (352)
495 PRK14268 phosphate ABC transpo 96.3 0.0088 1.9E-07 35.0 3.9 23 10-32 40-62 (258)
496 PRK05306 infB translation init 96.3 0.016 3.6E-07 39.2 5.5 30 8-37 290-319 (787)
497 PTZ00301 uridine kinase; Provi 96.3 0.005 1.1E-07 35.5 2.8 21 9-29 4-24 (210)
498 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.0081 1.8E-07 33.9 3.6 22 10-31 36-57 (207)
499 COG3596 Predicted GTPase [Gene 96.3 0.0061 1.3E-07 37.0 3.2 27 7-33 38-64 (296)
500 PRK11000 maltose/maltodextrin 96.3 0.0075 1.6E-07 37.3 3.7 23 10-32 31-53 (369)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=9e-17 Score=91.30 Aligned_cols=53 Identities=64% Similarity=1.078 Sum_probs=49.4
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYM 53 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~ 53 (57)
|+...+|.||++++|++|||||+|+.||..+.|.+++.+|||+||..+.+...
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~ 54 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD 54 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec
Confidence 56778999999999999999999999999999999999999999999988653
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=7.3e-14 Score=79.92 Aligned_cols=51 Identities=65% Similarity=1.034 Sum_probs=47.4
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYMY 54 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~~ 54 (57)
++++.+|++++|+++||||+++.||..+.|...+..|+|+||+.+.+....
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g 58 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG 58 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC
Confidence 678899999999999999999999999999999999999999999876543
No 3
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.47 E-value=2.5e-13 Score=76.13 Aligned_cols=48 Identities=52% Similarity=0.760 Sum_probs=43.7
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
.+...+|++++|++|||||+|+.||..+.|.+..+.|||.||+.+...
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~ 54 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQ 54 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEE
Confidence 356789999999999999999999999999999888899999988653
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.4e-13 Score=77.72 Aligned_cols=48 Identities=40% Similarity=0.679 Sum_probs=44.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYM 53 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~ 53 (57)
...+|++++|+.+||||+|+.||+.+.|...|.+|||+||..+...+.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~ 67 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLE 67 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEc
Confidence 346999999999999999999999999999999999999999987554
No 5
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.43 E-value=1.2e-13 Score=78.35 Aligned_cols=51 Identities=33% Similarity=0.656 Sum_probs=45.4
Q ss_pred CCC-ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 1 MSN-EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 1 m~~-~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
|+. .....+|++++|++|||||+|+.+|...+|...|..|||.||.++...
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~ 52 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQ 52 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEE
Confidence 555 335679999999999999999999999999999999999999988763
No 6
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.35 E-value=3.7e-13 Score=74.67 Aligned_cols=51 Identities=65% Similarity=0.999 Sum_probs=46.3
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
|..+....+|.+++|++|||||+|+.+|..+.|..+|..|+|.||+.+.+-
T Consensus 1 mar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~ 51 (198)
T KOG0079|consen 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVD 51 (198)
T ss_pred CcccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEee
Confidence 556667788999999999999999999999999999999999999998763
No 7
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.31 E-value=6.9e-12 Score=70.03 Aligned_cols=43 Identities=30% Similarity=0.748 Sum_probs=38.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+|++++|+++||||+|+.||..++|.+++.||+|.++..+.+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~ 43 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTIS 43 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEE
Confidence 5899999999999999999999999999999999998765443
No 8
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.31 E-value=1e-11 Score=69.55 Aligned_cols=42 Identities=31% Similarity=0.615 Sum_probs=38.6
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
....+|++++|+++||||+|+.+|..+.|++++.||++.+|.
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~ 43 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 43 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE
Confidence 356799999999999999999999999999999999998775
No 9
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=7.2e-12 Score=72.10 Aligned_cols=49 Identities=55% Similarity=0.863 Sum_probs=45.4
Q ss_pred CCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 2 ~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+.+.+|.||++++|+++||||.|+.||..++|..+-.+|||++|.++..
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~ 56 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTV 56 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeece
Confidence 3567899999999999999999999999999999999999999998765
No 10
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=5.3e-12 Score=71.77 Aligned_cols=46 Identities=41% Similarity=0.696 Sum_probs=42.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
..+|++++|+++||||||+.||..+.|.+...||||..|.++.+..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~ 49 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTV 49 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEe
Confidence 4799999999999999999999999999988999999999988744
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.30 E-value=1.5e-11 Score=69.29 Aligned_cols=48 Identities=40% Similarity=0.718 Sum_probs=42.3
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+.++.+|++++|+++||||+|+.+|..+.|.+.+.||++.+|......
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~ 49 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTIL 49 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEE
Confidence 356789999999999999999999999999999999999998766543
No 12
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.30 E-value=1.5e-11 Score=67.54 Aligned_cols=47 Identities=40% Similarity=0.871 Sum_probs=42.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
++.+|++++|++++|||+|+.++..+.|.+.+.||++.++......+
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~ 48 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVY 48 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEE
Confidence 46799999999999999999999999999999999999987766543
No 13
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=8.8e-12 Score=69.14 Aligned_cols=48 Identities=50% Similarity=1.017 Sum_probs=44.4
Q ss_pred CccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 3 ~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
++.++.+|++++|++.+|||+++.||.+..|...+..|+|++|+.+.+
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTv 63 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 63 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEe
Confidence 456789999999999999999999999999999999999999998864
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.27 E-value=1.8e-11 Score=69.70 Aligned_cols=44 Identities=34% Similarity=0.676 Sum_probs=39.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
+.++++|++|||||||+.||..+.|.+.+.+|+|.+|..+.+..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~ 44 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL 44 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE
Confidence 36899999999999999999999999999999999998766543
No 15
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.4e-13 Score=77.18 Aligned_cols=51 Identities=41% Similarity=0.841 Sum_probs=47.6
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYMY 54 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~~ 54 (57)
+++|.+|.+.+|++|||||+++.+|.++.|..+.+.|+|+||..++++|..
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s 55 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNS 55 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEec
Confidence 457788999999999999999999999999999999999999999999874
No 16
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.26 E-value=3.1e-11 Score=66.55 Aligned_cols=41 Identities=46% Similarity=0.813 Sum_probs=37.8
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
|++++|++++|||+|++++..+.|.++|.||++.+|..+..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~ 42 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERF 42 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEE
Confidence 79999999999999999999999999999999999876544
No 17
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.26 E-value=2.9e-11 Score=67.76 Aligned_cols=40 Identities=30% Similarity=0.708 Sum_probs=37.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
.+|++++|+++||||+|+.+|..+.|++.+.||+|.+|..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~ 42 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA 42 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE
Confidence 4899999999999999999999999999999999977753
No 18
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.26 E-value=2.4e-11 Score=66.83 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=39.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC-CcccCCeeeeEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFVSLSS 50 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~-~~~~~tig~~~~~~~~ 50 (57)
..+|++++|++|||||+|+.+|..+.|. ..+.||++.+|..+..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~ 47 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTV 47 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEE
Confidence 4689999999999999999999999998 8899999988865543
No 19
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.25 E-value=3.4e-11 Score=67.68 Aligned_cols=43 Identities=37% Similarity=0.648 Sum_probs=38.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+|++++|++++|||+|+.++..+.|...+.||+|.+|..+.+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~ 43 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIE 43 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEE
Confidence 5899999999999999999999999999999999998765543
No 20
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.25 E-value=3.3e-11 Score=65.76 Aligned_cols=44 Identities=70% Similarity=1.141 Sum_probs=40.2
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+.+|++++|++++|||+|+.++..+.|...+.||++.++..+.+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~ 45 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTI 45 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEE
Confidence 56999999999999999999999999999999999998876554
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.24 E-value=3.6e-11 Score=67.01 Aligned_cols=39 Identities=33% Similarity=0.670 Sum_probs=36.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
.+|++++|+++||||+|+.+|..+.|++.+.||++.+|.
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~ 39 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT 39 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE
Confidence 379999999999999999999999999999999998875
No 22
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.5e-11 Score=69.18 Aligned_cols=46 Identities=52% Similarity=0.881 Sum_probs=42.5
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+.+.+|++++|+.|||||+|+.||.+..|...+..|+|+||..+.+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~ 48 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMV 48 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEE
Confidence 4578999999999999999999999999999999999999987765
No 23
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.24 E-value=4.7e-11 Score=67.18 Aligned_cols=46 Identities=67% Similarity=1.056 Sum_probs=40.8
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
.++.+|++++|++++|||+|+.++..+.|...+.||++.++.....
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~ 48 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTV 48 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEE
Confidence 4567999999999999999999999999998999999988865543
No 24
>PLN03110 Rab GTPase; Provisional
Probab=99.23 E-value=6.8e-11 Score=67.47 Aligned_cols=47 Identities=51% Similarity=0.824 Sum_probs=42.0
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
.++.+|++++|++++|||+|+.++..+.|..++.||+|.+|..+.+.
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~ 55 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQ 55 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEE
Confidence 45779999999999999999999999999888999999998776554
No 25
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.23 E-value=4.6e-11 Score=64.34 Aligned_cols=42 Identities=36% Similarity=0.815 Sum_probs=38.2
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||||+.++..++|...+.||++.++..+..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~ 42 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKV 42 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEE
Confidence 589999999999999999999999999999999998866544
No 26
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.23 E-value=4.2e-11 Score=66.82 Aligned_cols=39 Identities=31% Similarity=0.718 Sum_probs=36.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
+|++++|+++||||+|+.+|..+.|.+++.||++.+|..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~ 40 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA 40 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEE
Confidence 689999999999999999999999999999999987753
No 27
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.23 E-value=4.5e-11 Score=68.16 Aligned_cols=44 Identities=27% Similarity=0.418 Sum_probs=39.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
+|++++|+++||||+|+.++..+.|.+.+.||+|.++..+...+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~ 44 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTY 44 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEE
Confidence 48999999999999999999999999999999998887665543
No 28
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.23 E-value=5.4e-11 Score=64.79 Aligned_cols=43 Identities=42% Similarity=0.779 Sum_probs=38.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
.+|++++|++++|||+|+.++..+.|...+.+|++.++..+..
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~ 44 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII 44 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEE
Confidence 5899999999999999999999999999999999998876543
No 29
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.23 E-value=5.9e-11 Score=67.95 Aligned_cols=45 Identities=31% Similarity=0.526 Sum_probs=40.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
...+|++++|++|||||+|+.++..+.|...+.||+|.++....+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~ 55 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF 55 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEE
Confidence 567999999999999999999999999999999999998876654
No 30
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.22 E-value=6e-11 Score=68.93 Aligned_cols=42 Identities=31% Similarity=0.585 Sum_probs=38.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
...+|++++|+++||||+|+.+|..+.|.+.|.||++.+|..
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~ 52 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA 52 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE
Confidence 467899999999999999999999999999999999988854
No 31
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.22 E-value=6e-11 Score=64.62 Aligned_cols=43 Identities=60% Similarity=0.941 Sum_probs=38.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+|++++|++++|||+|+.++..++|.+.+.||+|.++..+...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~ 43 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIE 43 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEE
Confidence 5899999999999999999999999999999999988765543
No 32
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.22 E-value=4.8e-11 Score=64.41 Aligned_cols=43 Identities=37% Similarity=0.671 Sum_probs=39.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
|++++|+.++|||+|+.++..+.|++.+.||+|.++....+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 43 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI 43 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc
Confidence 7999999999999999999999999999999998887776644
No 33
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.22 E-value=5.8e-11 Score=65.78 Aligned_cols=39 Identities=28% Similarity=0.737 Sum_probs=36.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
+|++++|++++|||+|+.++..+.|++.+.||++.+|..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~ 40 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV 40 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE
Confidence 799999999999999999999999999999999987753
No 34
>PLN00023 GTP-binding protein; Provisional
Probab=99.21 E-value=5.7e-11 Score=72.15 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=42.2
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
....+||+++|+.+||||+|+.++..+.|...+.||+|.++..+.+.+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~ 65 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITY 65 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEE
Confidence 345799999999999999999999999999999999999987665543
No 35
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.6e-11 Score=68.63 Aligned_cols=50 Identities=50% Similarity=0.862 Sum_probs=47.0
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
|+..+++.+|++++|++|.|||+|+++|..++|.++...|+|+||..+.+
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIi 51 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIV 51 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceee
Confidence 67788999999999999999999999999999999999999999998865
No 36
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.20 E-value=7.2e-11 Score=67.23 Aligned_cols=45 Identities=47% Similarity=0.757 Sum_probs=40.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+.+|++++|+++||||+|++++..+.|...+.||+|.++..+.+.
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~ 45 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIE 45 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEE
Confidence 468999999999999999999999999988899999998766553
No 37
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.20 E-value=7.5e-11 Score=67.08 Aligned_cols=43 Identities=44% Similarity=0.778 Sum_probs=39.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+|++++|++++|||+|++++..+.|...+.||++.|+..+.+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~ 43 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVT 43 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEE
Confidence 5899999999999999999999999999999999998766553
No 38
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.20 E-value=9e-11 Score=63.74 Aligned_cols=43 Identities=79% Similarity=1.215 Sum_probs=39.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
.+|++++|++++|||+|+.++.++.|...+.||++.++..+..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~ 44 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI 44 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEE
Confidence 5899999999999999999999999998999999988876654
No 39
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.9e-11 Score=66.18 Aligned_cols=49 Identities=39% Similarity=0.774 Sum_probs=44.9
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
++++.||++++|+.|||||+|++||.++-|+...-+|||+||-.+.+.-
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev 51 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV 51 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE
Confidence 4778899999999999999999999999999999999999998887643
No 40
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.19 E-value=1.2e-10 Score=63.38 Aligned_cols=42 Identities=52% Similarity=0.988 Sum_probs=38.2
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||+|++++..++|...+.||+|.++.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~ 43 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTV 43 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEE
Confidence 799999999999999999999999998899999988866544
No 41
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.18 E-value=7.7e-11 Score=68.04 Aligned_cols=38 Identities=37% Similarity=0.718 Sum_probs=36.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+|++++|+++||||+|+.+|..+.|+++|.||++.+|.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~ 39 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT 39 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE
Confidence 79999999999999999999999999999999998875
No 42
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.18 E-value=1.5e-10 Score=62.89 Aligned_cols=45 Identities=44% Similarity=0.826 Sum_probs=40.1
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+.+|++++|++++|||+|+.++..+.|...+.+|++.++..+...
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 46 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLE 46 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEE
Confidence 579999999999999999999999999998999999888766543
No 43
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.16 E-value=2.7e-10 Score=62.05 Aligned_cols=45 Identities=36% Similarity=0.676 Sum_probs=39.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
...+|++++|++++|||+|+.++..+.|...+.+++|.++..+..
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDL 47 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEE
Confidence 457999999999999999999999999998889999988765543
No 44
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.16 E-value=2.1e-10 Score=61.85 Aligned_cols=43 Identities=35% Similarity=0.723 Sum_probs=38.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+|++++|++++|||+|+.++..+.|.+.+.||++.++......
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~ 43 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIF 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEE
Confidence 4899999999999999999999999999999999998665543
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.16 E-value=2.1e-10 Score=62.11 Aligned_cols=45 Identities=53% Similarity=0.771 Sum_probs=40.0
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+.+|++++|++++|||+|++++..+++...+.||++.++......
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 46 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQ 46 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEE
Confidence 468999999999999999999999999988899999888766553
No 46
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.16 E-value=1.4e-10 Score=63.96 Aligned_cols=40 Identities=28% Similarity=0.496 Sum_probs=36.5
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
.+|++++|+++||||+|+.++..++|++.+.||++.++..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~ 41 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQ 41 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEE
Confidence 3799999999999999999999999999999999977753
No 47
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.15 E-value=1.5e-10 Score=62.07 Aligned_cols=40 Identities=33% Similarity=0.622 Sum_probs=35.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
++|++++|++++|||+|++++..+.|...+.||.+..+..
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~ 40 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK 40 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEE
Confidence 3799999999999999999999999999999999876643
No 48
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.14 E-value=2.2e-10 Score=62.79 Aligned_cols=42 Identities=33% Similarity=0.678 Sum_probs=37.9
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||+|+.++..+.+...+.||++.++....+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~ 42 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDF 42 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEE
Confidence 589999999999999999999999999999999988876544
No 49
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.14 E-value=2.8e-10 Score=62.22 Aligned_cols=45 Identities=49% Similarity=0.814 Sum_probs=40.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
++.+|++++|++++|||+|+.++..+++...+.+|+|.++....+
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~ 46 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI 46 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEE
Confidence 467999999999999999999999999998889999988865544
No 50
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.14 E-value=2.6e-10 Score=63.35 Aligned_cols=42 Identities=52% Similarity=0.809 Sum_probs=37.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+|++++|+++||||+|+.++..+.|...+.||+|.++..+..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~ 42 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTV 42 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEE
Confidence 589999999999999999999999988899999988875544
No 51
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.14 E-value=2.6e-10 Score=64.65 Aligned_cols=46 Identities=35% Similarity=0.567 Sum_probs=40.9
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
....+|++++|++|+|||||+.++..+.+...+.||++.++.....
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~ 51 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKF 51 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEE
Confidence 4467999999999999999999999999999999999998876544
No 52
>PLN03108 Rab family protein; Provisional
Probab=99.13 E-value=2.7e-10 Score=64.71 Aligned_cols=45 Identities=49% Similarity=0.814 Sum_probs=40.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
++.+|++++|++++|||+|+.++..+.|...+.||++.+|....+
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i 48 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI 48 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEE
Confidence 467999999999999999999999999988889999988866544
No 53
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.13 E-value=3.5e-10 Score=61.92 Aligned_cols=43 Identities=44% Similarity=0.825 Sum_probs=38.9
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
.+|++++|++++|||+|+.++..+.|+..+.+|++.++..+..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~ 44 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTV 44 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEE
Confidence 4799999999999999999999999999999999988876654
No 54
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.12 E-value=7.6e-11 Score=66.38 Aligned_cols=46 Identities=41% Similarity=0.741 Sum_probs=42.2
Q ss_pred CccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 3 ~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
.-+.|+|+++++||+.||||+|+..|..++|.+-..||+|+||..+
T Consensus 3 pif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffar 48 (213)
T KOG0091|consen 3 PIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFAR 48 (213)
T ss_pred cceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHH
Confidence 4467899999999999999999999999999999999999999754
No 55
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.10 E-value=4.9e-10 Score=60.49 Aligned_cols=43 Identities=44% Similarity=0.756 Sum_probs=38.5
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+|++++|++++|||+|++++..+.+...+.++++.++....+.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 43 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIR 43 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEE
Confidence 5899999999999999999999999999999999888766543
No 56
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.09 E-value=2.4e-10 Score=64.71 Aligned_cols=40 Identities=20% Similarity=0.448 Sum_probs=35.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
+|++++|+++||||+|+.++..++|+..+.||++.++...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~ 40 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRP 40 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcccccccee
Confidence 5899999999999999999999999999999998776443
No 57
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.09 E-value=6e-10 Score=60.20 Aligned_cols=42 Identities=29% Similarity=0.611 Sum_probs=36.6
Q ss_pred eeEEEECCCCCchHHHHHHhhcC--cCCCcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD--SYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~--~~~~~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||+|+.++..+ .|+.++.||+|.++..+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~ 44 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEV 44 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEE
Confidence 48999999999999999999865 7888999999998865544
No 58
>PTZ00369 Ras-like protein; Provisional
Probab=99.09 E-value=3.9e-10 Score=62.90 Aligned_cols=40 Identities=33% Similarity=0.648 Sum_probs=36.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
..+|++++|++++|||+|+.++..+.|...+.||++.+|.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~ 43 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR 43 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE
Confidence 4699999999999999999999999999999999987774
No 59
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.08 E-value=5.8e-10 Score=61.72 Aligned_cols=38 Identities=32% Similarity=0.768 Sum_probs=34.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+|++++|+++||||+|+.++..+.|.+++.||++..+.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~ 39 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 39 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE
Confidence 68999999999999999999999999999999986553
No 60
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.08 E-value=3.9e-10 Score=60.72 Aligned_cols=38 Identities=32% Similarity=0.649 Sum_probs=34.2
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
++|++++|++++|||+|+.++..+.|.+.+.||++..+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~ 38 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY 38 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE
Confidence 37999999999999999999999999999999998444
No 61
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.2e-10 Score=63.52 Aligned_cols=51 Identities=39% Similarity=0.737 Sum_probs=46.7
Q ss_pred CCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 2 ~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
+.++.+.||++++|+-||||++|+.+|...+|..+.+.|+|++|.++.+.-
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev 55 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV 55 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe
Confidence 456788999999999999999999999999999999999999999887643
No 62
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.07 E-value=4.9e-10 Score=60.72 Aligned_cols=39 Identities=33% Similarity=0.634 Sum_probs=35.5
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
++|++++|++++|||+|+.++..+.|...+.||++..+.
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~ 39 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR 39 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE
Confidence 479999999999999999999999999889999987664
No 63
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.07 E-value=6.9e-10 Score=61.71 Aligned_cols=42 Identities=33% Similarity=0.653 Sum_probs=36.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCC-cccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVD-SYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~-~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||+|+.++..+.|.. .+.+|+|.+|..+..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~ 43 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRM 43 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEE
Confidence 489999999999999999999999974 689999988865543
No 64
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.06 E-value=6.6e-10 Score=61.46 Aligned_cols=40 Identities=28% Similarity=0.713 Sum_probs=36.5
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
+|++++|++++|||+|++++..+.|++.+.||++.+|...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~ 40 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN 40 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE
Confidence 4899999999999999999999999999999999887544
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.06 E-value=9.8e-10 Score=59.77 Aligned_cols=40 Identities=40% Similarity=0.587 Sum_probs=35.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
+|++++|++++|||+|+.++..+.|.+.+.++.+.++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~ 40 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKH 40 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEE
Confidence 5899999999999999999999999988888888776544
No 66
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.06 E-value=7.1e-10 Score=62.51 Aligned_cols=45 Identities=33% Similarity=0.484 Sum_probs=40.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
.+|++++|++|+|||||+.++..+.|...+.||++.++.......
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 49 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP 49 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEe
Confidence 489999999999999999999999999999999998887776543
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.06 E-value=9.5e-10 Score=59.29 Aligned_cols=43 Identities=49% Similarity=0.810 Sum_probs=38.2
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
++|++++|++++|||+|++++..+++...+.+|.+.++....+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v 43 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTV 43 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEE
Confidence 4799999999999999999999999988889999987766554
No 68
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.06 E-value=7.1e-10 Score=61.92 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=35.6
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
.|++++|++++|||+|+.++..+.|++.+.||++.+|..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~ 39 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH 39 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE
Confidence 379999999999999999999999999999999987753
No 69
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.05 E-value=9.9e-10 Score=59.58 Aligned_cols=42 Identities=33% Similarity=0.762 Sum_probs=37.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||||++++.+..+...+.+|++.++..+..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~ 42 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV 42 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEE
Confidence 589999999999999999999999988889999988876554
No 70
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.03 E-value=2.3e-09 Score=58.13 Aligned_cols=47 Identities=45% Similarity=0.832 Sum_probs=40.1
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
..+.+|++++|++++|||+|+.++..+.+...+.+|++.++....+.
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 50 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE 50 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEE
Confidence 45679999999999999999999999998888889999887655443
No 71
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.03 E-value=1.5e-09 Score=58.46 Aligned_cols=43 Identities=42% Similarity=0.788 Sum_probs=38.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+|++++|++++|||+|+.++...++...+.|+.+.++......
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 43 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMY 43 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEE
Confidence 4899999999999999999999999988999999988776654
No 72
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.03 E-value=1e-09 Score=59.94 Aligned_cols=39 Identities=36% Similarity=0.821 Sum_probs=35.6
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
.|++++|++++|||+|+.++..+.|++.+.||++.++..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~ 40 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA 40 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE
Confidence 689999999999999999999999999999999877653
No 73
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.02 E-value=1e-09 Score=59.31 Aligned_cols=35 Identities=31% Similarity=0.703 Sum_probs=32.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCee
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIG 42 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig 42 (57)
++|++++|++++|||+|+.++..+.|.+.+.||++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~ 35 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE 35 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh
Confidence 47999999999999999999999999998999987
No 74
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.02 E-value=1.2e-09 Score=59.50 Aligned_cols=38 Identities=37% Similarity=0.760 Sum_probs=34.9
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+|++++|++++|||+|++++..+.|...+.||++..+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~ 39 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR 39 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE
Confidence 78999999999999999999999999889999986664
No 75
>PLN03118 Rab family protein; Provisional
Probab=99.01 E-value=2.1e-09 Score=60.85 Aligned_cols=47 Identities=51% Similarity=0.721 Sum_probs=39.7
Q ss_pred CccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 3 ~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
++....+|++++|++++|||+|+.++..+.+. .+.||.|.++....+
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~ 55 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQL 55 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEE
Confidence 45567899999999999999999999998874 578999988865544
No 76
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.01 E-value=2e-09 Score=57.86 Aligned_cols=43 Identities=56% Similarity=0.884 Sum_probs=37.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+|++++|++++|||+|++++....+...+.++++.++......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~ 43 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIE 43 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEE
Confidence 5899999999999999999999999888889999887765443
No 77
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.00 E-value=2e-09 Score=62.05 Aligned_cols=41 Identities=37% Similarity=0.629 Sum_probs=36.0
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||+|+.++..++|.+ +.||+|.++....+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~ 41 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW 41 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe
Confidence 589999999999999999999999975 68999988766554
No 78
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.99 E-value=1.1e-09 Score=63.95 Aligned_cols=40 Identities=30% Similarity=0.654 Sum_probs=35.0
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~ 49 (57)
+|++++|++++|||+|+.++..+.|...+.||++ ++..+.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~ 40 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKL 40 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEE
Confidence 5899999999999999999999999999999997 554433
No 79
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.96 E-value=2e-09 Score=58.15 Aligned_cols=38 Identities=37% Similarity=0.719 Sum_probs=34.0
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+|++++|++++|||+|+.++..+.+...+.||++..+.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~ 38 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR 38 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE
Confidence 58999999999999999999999999888898885553
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.96 E-value=3.3e-09 Score=57.16 Aligned_cols=42 Identities=57% Similarity=0.870 Sum_probs=37.2
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||+|+.++....+...+.|+++.++.....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~ 42 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTL 42 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEE
Confidence 589999999999999999999999988889999988765543
No 81
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.96 E-value=3.2e-09 Score=57.18 Aligned_cols=40 Identities=33% Similarity=0.631 Sum_probs=35.6
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
.+|++++|++++|||+|+.++..+.+...+.||.+..+..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~ 41 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTK 41 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEE
Confidence 4899999999999999999999999988889998866543
No 82
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.95 E-value=1.6e-09 Score=60.41 Aligned_cols=38 Identities=32% Similarity=0.632 Sum_probs=34.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
|++++|++++|||||+.++..+.|...+.||++.++..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~ 38 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK 38 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE
Confidence 58999999999999999999999998899999876643
No 83
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.95 E-value=3.2e-09 Score=59.28 Aligned_cols=42 Identities=48% Similarity=1.020 Sum_probs=36.2
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCC-CcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~-~~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||+|+.++..++|. +.+.+|++.++..+..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~ 43 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVV 43 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEE
Confidence 58999999999999999999999986 4688999988866443
No 84
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.95 E-value=2.5e-09 Score=61.34 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=35.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCC-CcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~-~~~~~tig~~~~~~~~ 50 (57)
+|++++|++|||||+|+.++..+.|. ..+.|+++.++..+.+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i 43 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTV 43 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEE
Confidence 58999999999999999999999887 7788888766655544
No 85
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.95 E-value=7e-10 Score=63.15 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=39.6
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
.+|++++|.+|||||++..+|..+.|.+.|.||++..|.....+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~ 47 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVD 47 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEEC
Confidence 589999999999999999999999999999999996666555443
No 86
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.95 E-value=3.7e-09 Score=57.97 Aligned_cols=37 Identities=32% Similarity=0.696 Sum_probs=33.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
+|++++|++|+|||+|+.++..+.|..++.||....+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~ 37 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF 37 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee
Confidence 5899999999999999999999999999999986444
No 87
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.93 E-value=3.1e-09 Score=58.70 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=34.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
..+|++++|++++|||+|+.++..++|. .+.||+|.++..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~ 51 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET 51 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE
Confidence 4699999999999999999999988885 478999977653
No 88
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.93 E-value=4.9e-09 Score=57.16 Aligned_cols=38 Identities=34% Similarity=0.843 Sum_probs=33.9
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+|++++|++++|||+|+.++..+.|...+.||++..+.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~ 38 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA 38 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE
Confidence 58999999999999999999999999888999875543
No 89
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.93 E-value=2.4e-09 Score=58.62 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=33.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
.++++|++++|||+|+.++..+.+.+.+.||+|.++.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~ 37 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV 37 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE
Confidence 3789999999999999999999999999999997653
No 90
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.91 E-value=4.8e-09 Score=57.39 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=30.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
+|++++|++|+|||+|+.++..+.|.+.+.|+. .+|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~ 36 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF 36 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce
Confidence 489999999999999999999999988776664 344
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.91 E-value=7.8e-09 Score=54.71 Aligned_cols=43 Identities=58% Similarity=0.910 Sum_probs=38.2
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+|++++|++++|||+|+.++..+.+...+.+|.+.++......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 43 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIE 43 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEE
Confidence 5899999999999999999999999988889999888766554
No 92
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.91 E-value=5.4e-09 Score=57.04 Aligned_cols=39 Identities=31% Similarity=0.646 Sum_probs=35.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
.+|++++|++++|||+|+.++..+.|...+.||++..+.
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~ 39 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR 39 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE
Confidence 378999999999999999999999999889999986653
No 93
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.90 E-value=4.4e-09 Score=58.59 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=34.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
..+|++++|++++|||+|+.++..++|.. +.||+|.++..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~ 55 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET 55 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE
Confidence 36899999999999999999999888875 67999977653
No 94
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.90 E-value=8.8e-09 Score=55.10 Aligned_cols=42 Identities=31% Similarity=0.634 Sum_probs=36.0
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+|++++|++++|||+|+.++..+.+...+.++.+.++.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~ 42 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTV 42 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEE
Confidence 589999999999999999999999988888888777655544
No 95
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.90 E-value=5.5e-09 Score=58.23 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=34.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
..+|++++|++++|||+|+.++..++|. .+.||+|.++.
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~ 54 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE 54 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE
Confidence 4689999999999999999999988887 47899997764
No 96
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.88 E-value=1.3e-08 Score=53.43 Aligned_cols=44 Identities=27% Similarity=0.511 Sum_probs=38.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
.+|++++|.+|+|||+|+.++..+.++..+.++++.++....+.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 44 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIE 44 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEE
Confidence 37999999999999999999999998888888999888775543
No 97
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.87 E-value=7.7e-09 Score=56.38 Aligned_cols=37 Identities=30% Similarity=0.837 Sum_probs=33.3
Q ss_pred EEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
++++|++++|||+|+.++..+.|...+.|+++..+..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~ 37 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSA 37 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeE
Confidence 5789999999999999999999999999999877654
No 98
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.87 E-value=6.5e-09 Score=56.62 Aligned_cols=37 Identities=27% Similarity=0.539 Sum_probs=32.6
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+|++++|++++|||+|+.++..++|. .+.||+|.++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~ 37 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE 37 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE
Confidence 48999999999999999999999897 47899997653
No 99
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.87 E-value=5.2e-09 Score=55.60 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=32.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~ 49 (57)
|++++|++++|||+|++++....+ .+.+|++.+|..+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~~~~ 39 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYNDGA 39 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEcCee
Confidence 899999999999999999998876 46788988886543
No 100
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.85 E-value=8.6e-09 Score=57.30 Aligned_cols=41 Identities=22% Similarity=0.495 Sum_probs=34.9
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~ 49 (57)
.+|++++|++++|||+|+.++..++|... .||+|.++....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~ 43 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIK 43 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEE
Confidence 58999999999999999999999988754 788887765443
No 101
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.84 E-value=5.6e-09 Score=56.68 Aligned_cols=37 Identities=30% Similarity=0.605 Sum_probs=32.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
|++++|++++|||+|+.++..+.|.+.+.||.+..+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~ 37 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS 37 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce
Confidence 6899999999999999999999998888888865553
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.83 E-value=1e-08 Score=56.39 Aligned_cols=39 Identities=23% Similarity=0.437 Sum_probs=34.2
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
..+|++++|++++|||+|+.++..+++.. +.||+|.++.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~ 46 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE 46 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE
Confidence 46899999999999999999999888864 6899997764
No 103
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.83 E-value=1.2e-08 Score=54.83 Aligned_cols=38 Identities=34% Similarity=0.669 Sum_probs=34.0
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+|++++|++++|||||+.++..+.|...+.++.+..+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~ 38 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR 38 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE
Confidence 58999999999999999999999999888898876554
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.83 E-value=1.2e-08 Score=55.87 Aligned_cols=37 Identities=24% Similarity=0.587 Sum_probs=32.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
|++++|++++|||+|+.++..+.+.. +.||+|.++..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~ 37 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET 37 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE
Confidence 68999999999999999999998865 78999977653
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.83 E-value=2e-08 Score=54.36 Aligned_cols=38 Identities=29% Similarity=0.770 Sum_probs=33.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+|++++|++++|||+|++++..+.+...+.|++...+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 38 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS 38 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE
Confidence 58999999999999999999999998888888875554
No 106
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.81 E-value=1.2e-08 Score=58.03 Aligned_cols=37 Identities=27% Similarity=0.576 Sum_probs=33.6
Q ss_pred ECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 14 IGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 14 iG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+|+++||||+|+.++..+.|.+.+.||+|.++....+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~ 37 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF 37 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEE
Confidence 5999999999999999999999999999999876654
No 107
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.81 E-value=1.5e-08 Score=55.62 Aligned_cols=38 Identities=39% Similarity=0.675 Sum_probs=34.0
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
.|++++|++|+|||||+.++....+...+.||.+..+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~ 39 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS 39 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE
Confidence 68999999999999999999999998888898876653
No 108
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.79 E-value=1.8e-08 Score=53.35 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=33.9
Q ss_pred EEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
+.++|++++|||+|++++...+|...+.||++.++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~ 38 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK 38 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE
Confidence 6899999999999999999999999999999987754
No 109
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.78 E-value=2.8e-08 Score=55.34 Aligned_cols=39 Identities=31% Similarity=0.570 Sum_probs=34.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
.|++++|++|+|||+|+.++..+.|++.+.+|++.++..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~ 40 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT 40 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE
Confidence 689999999999999999999999988888988776654
No 110
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=5.5e-09 Score=59.05 Aligned_cols=48 Identities=25% Similarity=0.444 Sum_probs=42.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEEEee
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYMYIC 56 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~~~~ 56 (57)
..+++|+++|..++|||+++.++..+++... .||+| |..+.+.|++++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn~~ 62 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKNIS 62 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcceE
Confidence 4589999999999999999999999999876 89999 888888888764
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.75 E-value=2.3e-08 Score=53.72 Aligned_cols=36 Identities=17% Similarity=0.452 Sum_probs=30.8
Q ss_pred eEEEECCCCCchHHHHHHhhcCc-CCCcccCCeeeeE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS-YVDSYISTIGVDF 45 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~-~~~~~~~tig~~~ 45 (57)
+++++|++++|||+|+.++.... +...+.||+|..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~ 37 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV 37 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce
Confidence 57899999999999999999876 4667889998654
No 112
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.74 E-value=2.9e-09 Score=59.92 Aligned_cols=47 Identities=28% Similarity=0.585 Sum_probs=42.2
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
+..++||++++|+.+||||+|+.||+.++|...+..|+-..|..+.+
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~ 55 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKV 55 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccc
Confidence 45679999999999999999999999999999999999888877654
No 113
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.73 E-value=3.6e-08 Score=54.05 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
+++++|++++|||+|++++... +...+.||+|...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~ 35 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP 35 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE
Confidence 4789999999999999999876 7788899999653
No 114
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.70 E-value=3.5e-08 Score=55.83 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=28.9
Q ss_pred eeeEEEECCCCCchHHHHH-HhhcC-----cCCCcccCCee
Q 035406 8 LFKLLLIGDSSVGKSCLLL-RFADD-----SYVDSYISTIG 42 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~-~~~~~-----~~~~~~~~tig 42 (57)
.+|++++|+++||||+|+. ++..+ .|...+.||+|
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~ 42 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVW 42 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCcee
Confidence 4899999999999999995 66543 45677899997
No 115
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.70 E-value=1.8e-08 Score=57.74 Aligned_cols=43 Identities=35% Similarity=0.706 Sum_probs=39.6
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~ 49 (57)
--+|++++|..+|||+++++||+.+.|...|.-|||.||..+.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerq 61 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQ 61 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHH
Confidence 4689999999999999999999999999999999999997654
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.69 E-value=5.8e-08 Score=53.47 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=34.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
..+|++++|++++|||+|+.++..+++.. +.||+|.++..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~ 53 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE 53 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE
Confidence 36899999999999999999999998875 57899876643
No 117
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.69 E-value=2.1e-08 Score=51.86 Aligned_cols=34 Identities=41% Similarity=0.449 Sum_probs=29.0
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCccc-CCee
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYI-STIG 42 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~-~tig 42 (57)
+|++++|+.|+|||+++.|+....|...+. +|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence 589999999999999999999888876555 6655
No 118
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.68 E-value=4.6e-08 Score=54.93 Aligned_cols=33 Identities=33% Similarity=0.684 Sum_probs=30.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCee
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIG 42 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig 42 (57)
|++++|++++|||+|+.++..+.+...+.+|++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 33 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE 33 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh
Confidence 689999999999999999999999988888886
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.67 E-value=6.2e-08 Score=52.10 Aligned_cols=36 Identities=36% Similarity=0.576 Sum_probs=30.9
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+++++|++++|||+|+.++..+++.. +.||++.++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~ 36 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE 36 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE
Confidence 58899999999999999999998875 4788886654
No 120
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.66 E-value=8.3e-08 Score=52.60 Aligned_cols=39 Identities=21% Similarity=0.501 Sum_probs=32.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...++++++|++++|||+|+.++....+ ..+.||+|...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~ 50 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI 50 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce
Confidence 3468999999999999999999998755 46779988544
No 121
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.66 E-value=8.3e-08 Score=51.21 Aligned_cols=34 Identities=32% Similarity=0.667 Sum_probs=31.0
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeee
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGV 43 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~ 43 (57)
|++++|++++|||+|+.++....+...+.|+.+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~ 34 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED 34 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH
Confidence 6899999999999999999998898888888873
No 122
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.61 E-value=6.8e-08 Score=52.65 Aligned_cols=31 Identities=29% Similarity=0.653 Sum_probs=27.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYIS 39 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~ 39 (57)
.|++++|++++|||+|+.++..+.|++.+.+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~ 31 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR 31 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCC
Confidence 3899999999999999999999999876544
No 123
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.60 E-value=1.3e-07 Score=48.90 Aligned_cols=25 Identities=36% Similarity=0.755 Sum_probs=22.1
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
||+++|+.|+|||+|++++....+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 7899999999999999999998886
No 124
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.59 E-value=1.6e-07 Score=51.98 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=32.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeee
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~ 44 (57)
....|++++|++++|||+|+.++..+.+. .+.||.+..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~ 54 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT 54 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc
Confidence 34689999999999999999999988874 577887754
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.58 E-value=6.6e-08 Score=53.68 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=33.5
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
....+++++|..++|||++++++..+++.. +.||.|.+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~ 50 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI 50 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc
Confidence 568999999999999999999999877654 789999544
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.58 E-value=1.7e-07 Score=50.39 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=31.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
|++++|.+++|||+|+.++..+.+ ..+.+|++.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~ 37 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET 37 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE
Confidence 689999999999999999999884 4578888866544
No 127
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.57 E-value=1.6e-07 Score=50.68 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=30.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
|++++|++++|||+|+.++..+.+.. +.||++.++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~ 36 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE 36 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE
Confidence 68999999999999999998888864 5789886654
No 128
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.56 E-value=2.2e-07 Score=51.75 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.7
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeee
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~ 44 (57)
+...++++++|++++||||++.++..+.+. .+.||.+..
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~ 52 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT 52 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc
Confidence 455799999999999999999999988775 356676643
No 129
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=1.7e-07 Score=53.75 Aligned_cols=42 Identities=33% Similarity=0.652 Sum_probs=38.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
..+|++++|+.|.|||++..|++.++|...+.+|+|.+....
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl 50 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPL 50 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeee
Confidence 489999999999999999999999999999999999886543
No 130
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.54 E-value=3.8e-08 Score=56.43 Aligned_cols=45 Identities=24% Similarity=0.645 Sum_probs=39.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
...|++++|+.++|||+++..|..+.|++.|.||+-..|.....+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V 47 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTV 47 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEe
Confidence 468999999999999999999999999999999998666655443
No 131
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.50 E-value=3.2e-07 Score=49.62 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=29.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC------cCCCcccCCeeeeEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD------SYVDSYISTIGVDFVS 47 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~------~~~~~~~~tig~~~~~ 47 (57)
+++++|++++|||+|+.++... .+...+.||++.++..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~ 44 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT 44 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE
Confidence 5789999999999999998753 2345667888877753
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.50 E-value=4.6e-07 Score=49.30 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=32.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...++++++|++|+|||+|+.++....+. .+.||.|.++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~ 50 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI 50 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce
Confidence 34789999999999999999999987764 4678887543
No 133
>PRK04213 GTP-binding protein; Provisional
Probab=98.47 E-value=6.9e-07 Score=49.97 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=30.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCee
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIG 42 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig 42 (57)
..++++++|++++|||||++++.+..+...+.|+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t 43 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT 43 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee
Confidence 568999999999999999999999888766666444
No 134
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.45 E-value=7.2e-07 Score=49.46 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=31.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeee
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGV 43 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~ 43 (57)
...+++++|++++|||||++++...++...+.++.|.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~ 59 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGR 59 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCc
Confidence 4578999999999999999999998776666777663
No 135
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.41 E-value=1.2e-06 Score=48.50 Aligned_cols=38 Identities=26% Similarity=0.269 Sum_probs=30.7
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeee
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGV 43 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~ 43 (57)
....+++++|++++|||||++++....+...+.++.|.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~ 53 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGR 53 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCc
Confidence 45689999999999999999999988765555555553
No 136
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.41 E-value=1.7e-06 Score=51.41 Aligned_cols=43 Identities=19% Similarity=0.424 Sum_probs=33.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCc----------ccCCeeeeEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDS----------YISTIGVDFVSLS 49 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~----------~~~tig~~~~~~~ 49 (57)
..++++++|++|+|||||++++....+... ..+|++++.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~ 55 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAE 55 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEE
Confidence 468999999999999999999998876543 4567666554443
No 137
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.30 E-value=1.7e-06 Score=46.04 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=28.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeee
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~ 44 (57)
+++++|++|+|||||++.+.++.+.....++.+.+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t 35 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKT 35 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcc
Confidence 47899999999999999999777766666666543
No 138
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.29 E-value=2.4e-06 Score=48.15 Aligned_cols=45 Identities=20% Similarity=0.424 Sum_probs=36.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYM 53 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~ 53 (57)
+.+++++++|..++|||+++.++.... .+...||.| |..+...++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~ 58 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYK 58 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEec
Confidence 348999999999999999999998766 567889999 555554444
No 139
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=1.9e-06 Score=47.84 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=39.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEEEee
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYMYIC 56 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~~~~ 56 (57)
.++++++.+|..++|||+++..+.-+.-. ...||+| |..+.+.|+++.
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN~k 62 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKNVK 62 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeeeeE
Confidence 35799999999999999999999877664 4679999 777888787653
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.27 E-value=2.9e-06 Score=47.59 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
.+.++++++|++|+|||||++++....+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~ 67 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY 67 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc
Confidence 34589999999999999999999987653
No 141
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.24 E-value=3.9e-08 Score=56.41 Aligned_cols=43 Identities=42% Similarity=0.722 Sum_probs=38.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
+..+|++++|+.++|||++++|++...|...|.+|||.||..+
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalk 65 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALK 65 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3468999999999999999999999999999999999998643
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.20 E-value=5.4e-06 Score=44.35 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=25.7
Q ss_pred eEEEECCCCCchHHHHHHhhc---CcCCCcccC--CeeeeE
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD---DSYVDSYIS--TIGVDF 45 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~---~~~~~~~~~--tig~~~ 45 (57)
-+.++|++++|||+|++++.. +.++.++.+ |+...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~ 42 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF 42 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee
Confidence 478999999999999999985 345444333 444444
No 143
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.16 E-value=1.3e-07 Score=52.09 Aligned_cols=38 Identities=47% Similarity=0.963 Sum_probs=33.4
Q ss_pred EECCCCCchHHHHHHhhcCcCCC-cccCCeeeeEEEEEE
Q 035406 13 LIGDSSVGKSCLLLRFADDSYVD-SYISTIGVDFVSLSS 50 (57)
Q Consensus 13 viG~~~vGKtsl~~~~~~~~~~~-~~~~tig~~~~~~~~ 50 (57)
++|++++|||+++.||.++.|.. .+.+|+|+||..+.+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli 40 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLI 40 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeecccccee
Confidence 68999999999999999999864 578999999987654
No 144
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.16 E-value=3.6e-06 Score=47.48 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=24.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSY 37 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~ 37 (57)
+|++++|++|+||||+++.+.+..+....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~ 30 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEG 30 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 68999999999999999999986665433
No 145
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.12 E-value=9.7e-06 Score=43.81 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=23.0
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
+++++|++++|||+|++++....+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~ 26 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE 26 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999998774
No 146
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.12 E-value=8.3e-07 Score=49.96 Aligned_cols=44 Identities=30% Similarity=0.707 Sum_probs=40.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
-.+|+-++||+.+|||+|+..|+++++.+++..+.|+.|-.+.+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~ 62 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTV 62 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEE
Confidence 47899999999999999999999999999999999999987765
No 147
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.11 E-value=4.4e-06 Score=47.46 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=26.8
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYIST 40 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~t 40 (57)
+++++|++++|||+|+.++..+++...+.++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~ 32 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI 32 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE
Confidence 5889999999999999999999887766443
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.11 E-value=1.1e-05 Score=43.47 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=26.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCe
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~ti 41 (57)
.++++|++++|||++++++..+++.....++.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~ 33 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGI 33 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCe
Confidence 47899999999999999999988876544333
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.08 E-value=7.9e-06 Score=45.68 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=23.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc--CcCCCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD--DSYVDS 36 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~--~~~~~~ 36 (57)
.+++++|++++|||+|+.++.. +.|...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~ 32 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFREN 32 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCcc
Confidence 4789999999999999999997 666544
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.06 E-value=2e-05 Score=41.76 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.5
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
++++++|++++|||+++.++....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~ 26 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR 26 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce
Confidence 5899999999999999999998764
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.01 E-value=8.5e-06 Score=43.43 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=24.8
Q ss_pred EECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 13 LIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 13 viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
++|++++|||||+.++.+..+.....|....++.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~ 34 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKK 34 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccc
Confidence 4799999999999999988655444454444443
No 152
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.97 E-value=2.2e-05 Score=43.12 Aligned_cols=37 Identities=24% Similarity=0.480 Sum_probs=28.0
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
|++++|+.|+|||+|++++.+.+. .+.-|-.++|...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~ 39 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDN 39 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEeccc
Confidence 789999999999999999998766 3444444445443
No 153
>PRK15494 era GTPase Era; Provisional
Probab=97.95 E-value=3.1e-05 Score=47.20 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=25.0
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
...+++++|++++|||||++++.+..+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ 78 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS 78 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCcee
Confidence 4579999999999999999999988774
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.94 E-value=4.4e-05 Score=48.10 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=30.9
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC--CCcccCCeeeeEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY--VDSYISTIGVDFVSLSS 50 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~--~~~~~~tig~~~~~~~~ 50 (57)
..++++++|++++|||||++++...+. ...+ |....|+....+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i 246 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDF 246 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEE
Confidence 458999999999999999999998653 3444 333455554443
No 155
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.92 E-value=3.6e-05 Score=41.23 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.++++++|++++|||+|++++....+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~ 27 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER 27 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc
Confidence 47899999999999999999987653
No 156
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.91 E-value=2.7e-05 Score=40.07 Aligned_cols=37 Identities=41% Similarity=0.697 Sum_probs=28.3
Q ss_pred EECCCCCchHHHHHHhhcCcC-CCcccCCeeeeEEEEEE
Q 035406 13 LIGDSSVGKSCLLLRFADDSY-VDSYISTIGVDFVSLSS 50 (57)
Q Consensus 13 viG~~~vGKtsl~~~~~~~~~-~~~~~~tig~~~~~~~~ 50 (57)
++|++++|||+|++++..... .....+|. .++.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~ 38 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTI 38 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEE
Confidence 479999999999999998777 56666666 55555444
No 157
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.91 E-value=1.9e-05 Score=41.88 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.2
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++.++|+.|+||||+++++.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~ 28 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKI 28 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCce
Confidence 57899999999999999999987654
No 158
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.86 E-value=8.1e-05 Score=41.11 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
..++++++|.+++|||++++++....+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~ 141 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA 141 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce
Confidence 3478999999999999999999987764
No 159
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.85 E-value=2.1e-05 Score=40.72 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.3
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
+++++|.+++|||||++.+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999975
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.85 E-value=4.9e-05 Score=47.97 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=30.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC-CcccCCeeeeEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFVSL 48 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~-~~~~~tig~~~~~~ 48 (57)
...+++++|.+++|||||++++...++. .+..|....|+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~ 252 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDS 252 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceE
Confidence 3589999999999999999999987652 23334444454433
No 161
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.84 E-value=2.5e-06 Score=47.61 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=38.7
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYM 53 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~ 53 (57)
..++.+.++|...+|||+|+.....+.|.+...||+| |..++....
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tkg 63 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTKG 63 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEeccC
Confidence 4578899999999999999999999999999999999 555554433
No 162
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.80 E-value=3.5e-05 Score=50.18 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=29.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCccc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYI 38 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~ 38 (57)
....+|+++|+.|+|||||+-.....+|++..+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP 39 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP 39 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccccc
Confidence 357899999999999999999999999987643
No 163
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.77 E-value=5.4e-05 Score=42.24 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.4
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+++.++|+.++|||+|+.++..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~ 22 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSE 22 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 164
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.75 E-value=3.9e-05 Score=45.89 Aligned_cols=28 Identities=18% Similarity=0.617 Sum_probs=23.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
..|+++|+|++|+|||||++.+......
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~ 30 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDII 30 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3689999999999999999998876443
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.75 E-value=8.4e-05 Score=40.66 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=25.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+++++|.+++|||+|++++.+ .+.. ..+|.+.+|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~-~~~~-~~~~~~v~~~ 37 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG-NYTL-ARKTQAVEFN 37 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC-CCcc-CccceEEEEC
Confidence 689999999999999999664 4422 2355555553
No 166
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.75 E-value=0.00014 Score=42.91 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.3
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
....++++++|.+|+||||+++.+.+...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~ 56 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERK 56 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45679999999999999999999998654
No 167
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.72 E-value=2.7e-05 Score=42.53 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
++.++|+.++|||+|+.++...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 168
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.71 E-value=0.00018 Score=38.91 Aligned_cols=38 Identities=21% Similarity=0.159 Sum_probs=29.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...+++++|.+++|||++++++.... ...+.++.|...
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~ 137 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTK 137 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeee
Confidence 35688999999999999999998654 445667777543
No 169
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.70 E-value=0.00011 Score=45.08 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
..++++++|.+++|||||++++.+.++.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~ 215 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVY 215 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcee
Confidence 3489999999999999999999987653
No 170
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.69 E-value=5.4e-05 Score=41.28 Aligned_cols=28 Identities=18% Similarity=0.055 Sum_probs=23.8
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSY 37 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~ 37 (57)
+++++|+.++|||+|++.+.........
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~ 28 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIER 28 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCc
Confidence 4789999999999999999987776544
No 171
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.68 E-value=4.1e-05 Score=43.18 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
++++++|++|+||||++.++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998876
No 172
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.68 E-value=4.9e-05 Score=41.02 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++++|||||++++...+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~ 24 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK 24 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998654
No 173
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.67 E-value=0.00019 Score=45.41 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..+++++|.++||||||++++....+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~ 63 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRRE 63 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCc
Confidence 46899999999999999999998764
No 174
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.67 E-value=0.00016 Score=38.82 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
+++++|.+++|||++++++...+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~ 109 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV 109 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce
Confidence 7899999999999999999987764
No 175
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.67 E-value=6e-05 Score=42.13 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
-++++|.+|||||||++.+....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 46789999999999999998763
No 176
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.65 E-value=0.00015 Score=40.26 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=26.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
+++.++|.+++|||+|++++.+.+..-...|-.-.+..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~ 38 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKK 38 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeee
Confidence 47899999999999999999987654333333333433
No 177
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.60 E-value=0.00021 Score=45.11 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.5
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.++++++|.+++|||||++++...+.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~ 240 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEER 240 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57999999999999999999998654
No 178
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.59 E-value=7.9e-05 Score=38.61 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.|++.|.+|+|||++++.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988763
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.59 E-value=0.00018 Score=44.66 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
++++++|.++||||||++++.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~ 26 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD 26 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5799999999999999999997653
No 180
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.58 E-value=8.5e-05 Score=43.76 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.8
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
++.++|.+++|||||++++.+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~ 25 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI 25 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE
Confidence 578999999999999999998765
No 181
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.58 E-value=0.00012 Score=44.59 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=28.6
Q ss_pred EEEECCCCCchHHHHHHhhcCcCC------CcccCCeeeeEE
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSYV------DSYISTIGVDFV 46 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~~------~~~~~tig~~~~ 46 (57)
+.++|.+++|||||++++....+. ..+.|++|..+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~ 42 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYV 42 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEE
Confidence 468999999999999999987642 345788887664
No 182
>PRK08118 topology modulation protein; Reviewed
Probab=97.57 E-value=8.9e-05 Score=41.19 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.6
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+|+++|.+|+|||+++..+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998775
No 183
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.55 E-value=9.6e-05 Score=41.98 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=21.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSY 37 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~ 37 (57)
-.++++|++++|||+|+.++..+.+.+.+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~ 32 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTV 32 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B-
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCee
Confidence 35889999999999999999999776544
No 184
>PRK07261 topology modulation protein; Provisional
Probab=97.55 E-value=9.9e-05 Score=41.05 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.4
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++++|.+|+|||+++..+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999998764
No 185
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.54 E-value=0.00013 Score=44.48 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.6
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCc
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
....++++++|.+|+||||+++++.+.+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999999764
No 186
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.52 E-value=0.00018 Score=44.95 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=29.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCC-cc-----cCCeeeeE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVD-SY-----ISTIGVDF 45 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~-~~-----~~tig~~~ 45 (57)
+++.++|.+++|||||++++...++.. .| .|++|..+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~ 44 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAY 44 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeee
Confidence 689999999999999999999876642 22 47777654
No 187
>PRK11058 GTPase HflX; Provisional
Probab=97.52 E-value=0.00022 Score=44.85 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.5
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+++++|.+++|||||++++...++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~ 222 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARV 222 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce
Confidence 5899999999999999999998654
No 188
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.50 E-value=0.00014 Score=42.20 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.1
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVD 35 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~ 35 (57)
|++++|+.++|||+|+.++..+.|..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~ 26 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN 26 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 57899999999999999999877754
No 189
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.48 E-value=0.00031 Score=40.56 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=27.9
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCee
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIG 42 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig 42 (57)
...-|+++|.++|||||+++.+.+.+-......|.|
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG 58 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG 58 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC
Confidence 356799999999999999999998664344445555
No 190
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.45 E-value=0.00018 Score=39.13 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
...+.++|.++|||||+++.+.....
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 46788999999999999999987544
No 191
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.45 E-value=0.00014 Score=38.57 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=17.5
Q ss_pred EEEECCCCCchHHHHHHhh
Q 035406 11 LLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~ 29 (57)
++++|.+|+|||+++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999877
No 192
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.45 E-value=0.00016 Score=39.03 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.6
Q ss_pred EECCCCCchHHHHHHhhcCcC
Q 035406 13 LIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 13 viG~~~vGKtsl~~~~~~~~~ 33 (57)
++|++++|||||++++.+..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 479999999999999998764
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.44 E-value=0.00053 Score=39.86 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.9
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
++.++|.+++|||+|++++.+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68899999999999999999764
No 194
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.43 E-value=0.00012 Score=38.83 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.4
Q ss_pred EEECCCCCchHHHHHHhhcCc
Q 035406 12 LLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 12 ~viG~~~vGKtsl~~~~~~~~ 32 (57)
+++|++|+|||||++++....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~ 21 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR 21 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc
Confidence 368999999999999998764
No 195
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.42 E-value=0.00028 Score=40.36 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
++|+++|..|+|||++.+.+++....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f 26 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVF 26 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-S
T ss_pred CEEEEECCCCCCHHHHHHHHhcccce
Confidence 58999999999999999999876543
No 196
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.40 E-value=0.00056 Score=38.40 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.9
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
++++++|.+|+|||++++.+++.+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~ 25 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREV 25 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCc
Confidence 4689999999999999999997643
No 197
>PRK00089 era GTPase Era; Reviewed
Probab=97.39 E-value=0.00022 Score=42.25 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.6
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.-.+.++|++++|||||++++.+...
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~ 30 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKI 30 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCce
Confidence 45689999999999999999987755
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.33 E-value=0.00061 Score=45.08 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..+++++|.+++|||||++++...+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~ 475 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEER 475 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc
Confidence 57999999999999999999998764
No 199
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.32 E-value=0.00033 Score=35.75 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.0
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVD 35 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~ 35 (57)
-.+++.|++|+|||+++..+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 357899999999999999888665543
No 200
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.32 E-value=0.00021 Score=39.10 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=16.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.--+++.|++|+|||+++.++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999998664
No 201
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.31 E-value=0.0007 Score=41.89 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
+++++|.++||||||++++.....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~ 24 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD 24 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc
Confidence 578999999999999999998653
No 202
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.30 E-value=0.00045 Score=37.46 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEECCCCCchHHHHHHhhcCcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~ 33 (57)
|.++|..++|||+|++.+++...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i 23 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI 23 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-
T ss_pred CEEEcCCCCCHHHHHHHHHhccc
Confidence 57899999999999999998763
No 203
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.28 E-value=0.0015 Score=40.55 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..+++.++|.+++|||||+++++..+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999998654
No 204
>PRK06217 hypothetical protein; Validated
Probab=97.28 E-value=0.00037 Score=38.92 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+|+++|.+|+|||++..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 205
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.28 E-value=0.00033 Score=36.34 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.2
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578999999999999987753
No 206
>PF05729 NACHT: NACHT domain
Probab=97.27 E-value=0.00033 Score=37.51 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=18.3
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+++.|++|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 678999999999999987753
No 207
>PRK12288 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.0003 Score=43.30 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.6
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+++|.+|||||||++.+....
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 6789999999999999999753
No 208
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.26 E-value=0.00039 Score=43.36 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=20.9
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..++|.|.|++|+|||||++.+.+-
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl 58 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGL 58 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999763
No 209
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.23 E-value=0.00033 Score=36.54 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=18.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
-+++.|++|+|||+++.++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999988653
No 210
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.23 E-value=0.00033 Score=37.19 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.7
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+++.|++|+|||+++..+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999997664
No 211
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.23 E-value=0.001 Score=43.32 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=29.0
Q ss_pred eEEEECCCCCchHHHHHHhhc---CcCCCcccCCeeeeEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD---DSYVDSYISTIGVDFVS 47 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~---~~~~~~~~~tig~~~~~ 47 (57)
.+.++|..++|||||++++.+ +.+++++.+++.+++..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~ 42 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGF 42 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEE
Confidence 578999999999999999985 45666666666655543
No 212
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.22 E-value=0.00043 Score=38.66 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.9
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
++++.|++|+|||+++.++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 688999999999999998774
No 213
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.22 E-value=0.0004 Score=38.85 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.++++|++|+||||+++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998654
No 214
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.21 E-value=0.0014 Score=42.81 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=27.9
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCe
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTI 41 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~ti 41 (57)
..++.++|..++|||||+.++....+.....+.+
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GI 120 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGI 120 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccCCce
Confidence 4689999999999999999999887766554433
No 215
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.21 E-value=0.00055 Score=40.36 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=21.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVD 35 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~ 35 (57)
.++++|++|+|||+|++.+..-+-++
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~ 55 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD 55 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC
Confidence 46789999999999999887655544
No 216
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.21 E-value=0.00041 Score=35.81 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
-.+++.|++|+|||+++..+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999887653
No 217
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.20 E-value=0.002 Score=39.93 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..+++.++|.+++|||+|++++...+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~ 197 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEER 197 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCe
Confidence 458999999999999999999997653
No 218
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.19 E-value=0.0011 Score=37.09 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=35.7
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYM 53 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~ 53 (57)
...++++.++|-.++|||+|+.++.. +.+.+..||-| |.++.+.|.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~s-ED~~hltpT~G--Fn~k~v~~~ 59 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKS-EDPRHLTPTNG--FNTKKVEYD 59 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHcc-CChhhccccCC--cceEEEeec
Confidence 34579999999999999999988765 44556779999 666666553
No 219
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.18 E-value=0.00047 Score=38.08 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-++++|++|+|||++++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999987553
No 220
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.16 E-value=0.00076 Score=38.48 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=20.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
...-++++|++|+|||+++..+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456778999999999999988753
No 221
>PF13173 AAA_14: AAA domain
Probab=97.15 E-value=0.00055 Score=36.19 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=19.6
Q ss_pred EEEECCCCCchHHHHHHhhcCcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~ 33 (57)
+++.|++++|||+++.++.....
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57889999999999999886544
No 222
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.14 E-value=0.00056 Score=36.83 Aligned_cols=21 Identities=48% Similarity=0.746 Sum_probs=18.3
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
++++|++|+|||+++..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999988753
No 223
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.14 E-value=0.00037 Score=38.04 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=17.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
||++.|..++|||+|+..+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999988754
No 224
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.12 E-value=0.00058 Score=37.63 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.++++|++|+|||+++..+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4689999999999999988763
No 225
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.12 E-value=0.0024 Score=42.96 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+++.++|.+++|||+|++++.+.+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~ 28 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ 28 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC
Confidence 47899999999999999999987654
No 226
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00076 Score=40.08 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEECCCCCchHHHHHHhhcCcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~ 33 (57)
+.++|++|+|||||++-..+-.-
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999998776443
No 227
>PRK03839 putative kinase; Provisional
Probab=97.11 E-value=0.00064 Score=37.66 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
+++++|.+|+|||++..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877653
No 228
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.11 E-value=0.0013 Score=42.90 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=28.0
Q ss_pred CCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 15 GDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 15 G~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
|++++||||+++++.+..+...+.|....+.......
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~ 37 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLG 37 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEE
Confidence 7899999999999998877555566666666554443
No 229
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.11 E-value=0.00052 Score=40.23 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..+++|.+|||||||++.+...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 5679999999999999999865
No 230
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.00075 Score=41.61 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEECCCCCchHHHHHHhhcCcCC
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
++++|++|+|||++++-+.+-+-+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 678899999999999988875543
No 231
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.10 E-value=0.00071 Score=37.87 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+++.++|.+++||||+++++....-
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc
Confidence 37899999999999999999997543
No 232
>PRK14532 adenylate kinase; Provisional
Probab=97.09 E-value=0.00067 Score=37.76 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
++++++|.+|+|||++..++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 233
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.09 E-value=0.00063 Score=38.48 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=19.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.=++++|++|+||++++.++...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34789999999999999999764
No 234
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.09 E-value=0.00065 Score=40.17 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=20.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..++++++|.+|+|||+++..++.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999998887664
No 235
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.09 E-value=0.00061 Score=35.18 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.7
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
|++.|.+|+|||+++..+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999876643
No 236
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.08 E-value=0.0025 Score=37.87 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++++++|.++|||||+++++.....
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~ 143 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKV 143 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 357899999999999999999987653
No 237
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.08 E-value=0.0015 Score=33.98 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=18.5
Q ss_pred EECCCCCchHHHHHHhhcCcCC
Q 035406 13 LIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 13 viG~~~vGKtsl~~~~~~~~~~ 34 (57)
++|..|+|||++++++......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~ 22 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA 22 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc
Confidence 4799999999999999876443
No 238
>PRK12289 GTPase RsgA; Reviewed
Probab=97.07 E-value=0.00056 Score=42.21 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+++|.+|||||||++.+....
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 6899999999999999998653
No 239
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.07 E-value=0.0029 Score=41.95 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.6
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
...++.++|.++||||||++++.+...
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~ 300 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE 300 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 357899999999999999999997654
No 240
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.07 E-value=0.00055 Score=38.36 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.2
Q ss_pred eeEEEECCCCCchHHHHHHhhcCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
--+++.|++|+|||+++..+....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 457788999999999999888644
No 241
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.04 E-value=0.00074 Score=37.96 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
--++++|++|+|||+++..+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999887753
No 242
>PRK13695 putative NTPase; Provisional
Probab=97.03 E-value=0.0008 Score=37.18 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
+++++.|++|+|||+++..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999854
No 243
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.03 E-value=0.00077 Score=35.53 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 56899999999999998776543
No 244
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.03 E-value=0.00092 Score=32.10 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.0
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+.+.|.+|+|||++++.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999987754
No 245
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.02 E-value=0.00082 Score=38.23 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
+++++|..++|||+|+.+++....
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~ 25 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTH 25 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcC
Confidence 578999999999999999986543
No 246
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.02 E-value=0.00052 Score=41.74 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-.+++|.+|||||||++++...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 3578899999999999998863
No 247
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.02 E-value=0.0012 Score=37.38 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=31.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC--CCcccCCeeeeEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY--VDSYISTIGVDFV 46 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~--~~~~~~tig~~~~ 46 (57)
...|++++|--+||||+++.+..-++. ..++.||+.+-|-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~ 49 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYV 49 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhee
Confidence 467999999999999999999886544 3456799886654
No 248
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.01 E-value=0.0011 Score=38.89 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
-+.++|++|+|||+|++-+..-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 357899999999999998775443
No 249
>PRK14530 adenylate kinase; Provisional
Probab=97.00 E-value=0.00093 Score=38.13 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++++|.+|+|||++...+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998753
No 250
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.99 E-value=0.00081 Score=37.54 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..+.++|.+++|||+|++.+....
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998754
No 251
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.98 E-value=0.00092 Score=36.84 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=17.9
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
.++++|.+|+|||+++..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57789999999999998876
No 252
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.0009 Score=38.41 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=19.8
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
-+++.|++|+||+|+++.+....
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 46788999999999999988654
No 253
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.98 E-value=0.00084 Score=38.99 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+++.|++|+|||++++.+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4789999999999999988754
No 254
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.97 E-value=0.0011 Score=37.86 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
+++.++|+.|+|||+++.++...
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68899999999999999988753
No 255
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=96.96 E-value=0.0015 Score=39.90 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=26.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcC------CCcccCCeee
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSY------VDSYISTIGV 43 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~------~~~~~~tig~ 43 (57)
..+.++|.+++|||||+.++..... .....|++|.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~ 198 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV 198 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE
Confidence 4678999999999999999987542 1234566664
No 256
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.00011 Score=40.99 Aligned_cols=47 Identities=26% Similarity=0.426 Sum_probs=38.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEEEEe
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIYMYI 55 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~~~~ 55 (57)
+...+++++|..|+|||++..|..-++-. ...||+| |....+.|+++
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtig--fnve~v~yKNL 62 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIG--FNVETVPYKNL 62 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCC--cCccccccccc
Confidence 35789999999999999999999888775 4679999 66666666654
No 257
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.95 E-value=0.0023 Score=37.57 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=21.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcc---cCCeeeeE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSY---ISTIGVDF 45 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~---~~tig~~~ 45 (57)
|++++|.+++||||+....-.+--+.+. .||+.++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~ 39 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK 39 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE
Confidence 7899999999999977766555433332 36665553
No 258
>PRK14531 adenylate kinase; Provisional
Probab=96.94 E-value=0.0011 Score=36.95 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+.+++++|.+|+|||++..++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999887754
No 259
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.94 E-value=0.001 Score=42.36 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=22.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+|++++|.++||||||++.+...
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~ 240 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGR 240 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcC
Confidence 479999999999999999999975
No 260
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0013 Score=40.77 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEECCCCCchHHHHHHhhcCcCCC
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSYVD 35 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~~~ 35 (57)
+.++|++|+||||+++.+.+=+.++
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p~ 58 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQPS 58 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4689999999999999888655443
No 261
>PRK02496 adk adenylate kinase; Provisional
Probab=96.91 E-value=0.0014 Score=36.41 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
++++++|.+|+|||+++..+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999887754
No 262
>PRK00098 GTPase RsgA; Reviewed
Probab=96.91 E-value=0.0011 Score=39.78 Aligned_cols=23 Identities=48% Similarity=0.547 Sum_probs=19.9
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.++++|.+|+|||||++.+....
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999988643
No 263
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.90 E-value=0.0015 Score=39.07 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.6
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++++++|.++|||||+++.+.....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 357899999999999999999987654
No 264
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.90 E-value=0.0015 Score=31.25 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=17.8
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
.++.|+.|+|||+++..+..-
T Consensus 26 tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999876643
No 265
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.90 E-value=0.0011 Score=36.74 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
+|+++|.+|+|||+++..+..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988765
No 266
>PRK08233 hypothetical protein; Provisional
Probab=96.89 E-value=0.0012 Score=36.17 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+-+.+.|.+|+|||+++.++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5567889999999999998875
No 267
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.88 E-value=0.0013 Score=38.39 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.++++++|.+|+||+++..++..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998765
No 268
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.88 E-value=0.0012 Score=37.08 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=17.4
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+.+.|++|+|||+++..+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999988765
No 269
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.87 E-value=0.002 Score=36.41 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+.++|.+|+|||+|+.++...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHH
Confidence 4678899999999999987743
No 270
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.86 E-value=0.00097 Score=36.29 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.4
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
++++|++|+|||++...+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468899999999999876643
No 271
>PHA00729 NTP-binding motif containing protein
Probab=96.85 E-value=0.0016 Score=38.16 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.6
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.++++.|.+|+|||+++..+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998765
No 272
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.83 E-value=0.0036 Score=39.11 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=23.6
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..|.++++|++|.|||+|++.+.....
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l 48 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSL 48 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhc
Confidence 468999999999999999999887643
No 273
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.83 E-value=0.0019 Score=36.64 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.6
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..-+.+.|++|+|||++++.+..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999998764
No 274
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.83 E-value=0.0017 Score=36.74 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+.+.+.|++|+|||+|+..+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357888999999999999987765
No 275
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0017 Score=36.88 Aligned_cols=24 Identities=33% Similarity=0.699 Sum_probs=21.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+|+.+-|.+|+|||+++.+...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 468999999999999999998774
No 276
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.82 E-value=0.0014 Score=37.31 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
+++++|.+|+|||++..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 277
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.82 E-value=0.0018 Score=35.12 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
....+.++|.+++|||++++.+....
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 35678999999999999999988754
No 278
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.82 E-value=0.0016 Score=36.32 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=18.0
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
++++|++|+||++++.++..
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998875
No 279
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.81 E-value=0.0027 Score=41.62 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=28.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCc----ccCCeeeeEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDS----YISTIGVDFV 46 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~----~~~tig~~~~ 46 (57)
-+.++|..++|||||+.++....+... +..++|..+.
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v 46 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI 46 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe
Confidence 478999999999999999998777533 3445665554
No 280
>PRK13949 shikimate kinase; Provisional
Probab=96.81 E-value=0.0018 Score=36.05 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.3
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
+++++|.+|+|||++......
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999886553
No 281
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.80 E-value=0.0019 Score=38.50 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.3
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..-++++|++|+|||++++.++..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CCcEEEECCCCCchhHHHHhhhccC
Confidence 3568999999999999999988653
No 282
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.80 E-value=0.0016 Score=35.96 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=17.5
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
++++|.+|+|||+++.++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999888764
No 283
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.79 E-value=0.0015 Score=36.76 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=17.7
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
.+.++|++|+|||+|++...
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998775
No 284
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.79 E-value=0.0016 Score=34.22 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=17.7
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
.+.++|++|+|||+++..+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 46789999999999999866
No 285
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.79 E-value=0.0044 Score=40.58 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..++.++|..++|||||+.+++..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~ 26 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEY 26 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999864
No 286
>PRK07429 phosphoribulokinase; Provisional
Probab=96.79 E-value=0.0024 Score=39.13 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=24.1
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhc
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
|-......+-+.+.|++|+|||++++.+..
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 444455678899999999999999988774
No 287
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.78 E-value=0.0025 Score=36.17 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4579999999999999988764
No 288
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.78 E-value=0.0026 Score=36.12 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999988764
No 289
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.77 E-value=0.0033 Score=40.27 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=32.0
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
..-.++++|+.++|||+|+.++...+ ...++.|.+|.--.+
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v 64 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDV 64 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEee
Confidence 34689999999999999999987543 456788888865443
No 290
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.77 E-value=0.0026 Score=35.85 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999887643
No 291
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.77 E-value=0.0018 Score=36.21 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
++++|++|+||++++.++....
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6899999999999999998763
No 292
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.75 E-value=0.0019 Score=36.86 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
++++++|.+|+|||++...+..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999887653
No 293
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.75 E-value=0.0019 Score=38.60 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
-.+.++|.+|+|||||++.+.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4578999999999999999887543
No 294
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.75 E-value=0.0026 Score=35.96 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999988764
No 295
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0017 Score=38.67 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=18.1
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+.++|++|+|||+|++.+..
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 67899999999999998876
No 296
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.74 E-value=0.003 Score=35.53 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999888653
No 297
>PF13479 AAA_24: AAA domain
Probab=96.74 E-value=0.0018 Score=37.14 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.9
Q ss_pred eeeeEEEECCCCCchHHHHHHh
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRF 28 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~ 28 (57)
..+++++-|++|+|||+++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 3579999999999999999987
No 298
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.74 E-value=0.0021 Score=35.77 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.4
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++++|.+|+|||++...+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999998764
No 299
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.73 E-value=0.0015 Score=33.68 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=16.8
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
|.+-|++|+|||+++..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46789999999999998553
No 300
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.73 E-value=0.0028 Score=35.68 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.0
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+.++|++|+|||+|++-+.+-..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 467999999999999998876543
No 301
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0031 Score=35.64 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999999888653
No 302
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.72 E-value=0.0031 Score=35.64 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999988764
No 303
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.72 E-value=0.0029 Score=36.43 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999987754
No 304
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.72 E-value=0.0032 Score=35.50 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999877654
No 305
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.72 E-value=0.0019 Score=35.51 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.0
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+++.|++|+|||+|+.++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999987653
No 306
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.71 E-value=0.0032 Score=35.66 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999987764
No 307
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.71 E-value=0.0026 Score=40.42 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
++.++|++|+||||+++-+..-
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999888754
No 308
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.70 E-value=0.0034 Score=35.85 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999887654
No 309
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.70 E-value=0.0021 Score=34.52 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=17.9
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+++.|.+|+|||++...+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 578899999999999987653
No 310
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0031 Score=36.22 Aligned_cols=23 Identities=39% Similarity=0.367 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999888643
No 311
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.70 E-value=0.0021 Score=34.10 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=17.8
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+++.|++|+|||+++..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 578999999999999887643
No 312
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0029 Score=36.02 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999999887643
No 313
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.69 E-value=0.0028 Score=36.24 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 46789999999999998887653
No 314
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.69 E-value=0.0032 Score=35.78 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999977654
No 315
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.68 E-value=0.0031 Score=35.21 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999887754
No 316
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.67 E-value=0.0036 Score=35.42 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-..+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999998888653
No 317
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.67 E-value=0.0035 Score=35.90 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887643
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.67 E-value=0.0036 Score=36.94 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=22.6
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
...++++|+.++||||++..+.+..|
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 34789999999999999999998653
No 319
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.67 E-value=0.0035 Score=35.38 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999888643
No 320
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.66 E-value=0.0035 Score=35.71 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999887643
No 321
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.66 E-value=0.0036 Score=35.59 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999988765
No 322
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.66 E-value=0.0023 Score=36.33 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=19.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-.+++.|++|+|||+++..+...
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999887643
No 323
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.66 E-value=0.0027 Score=39.11 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+++++|.++||||||++.+...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999874
No 324
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.65 E-value=0.004 Score=34.23 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.9
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+.++|++|+|||+|++-+.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999998876543
No 325
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0033 Score=35.56 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999988764
No 326
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.64 E-value=0.0033 Score=35.70 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999888653
No 327
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0038 Score=35.37 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3679999999999999987764
No 328
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.64 E-value=0.0013 Score=38.60 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.4
Q ss_pred EECCCCCchHHHHHHhhc
Q 035406 13 LIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 13 viG~~~vGKtsl~~~~~~ 30 (57)
|+|++|+|||+++..+..
T Consensus 1 ViGpaGSGKTT~~~~~~~ 18 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSE 18 (238)
T ss_dssp -EESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 589999999999998774
No 329
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.64 E-value=0.007 Score=39.88 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=35.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLS 49 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~ 49 (57)
..-++++++|+.++|||++++.|.++.+...+.++....|....
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~ 466 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNS 466 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeee
Confidence 45789999999999999999999998888776666665554443
No 330
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.63 E-value=0.0021 Score=37.76 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
++.++|.+++|||+|+.++..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~ 21 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLY 21 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 331
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.63 E-value=0.0037 Score=35.45 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 46799999999999999887643
No 332
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.63 E-value=0.0036 Score=35.44 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4679999999999999987764
No 333
>PRK10908 cell division protein FtsE; Provisional
Probab=96.63 E-value=0.0039 Score=35.55 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999887643
No 334
>PRK14528 adenylate kinase; Provisional
Probab=96.63 E-value=0.0028 Score=35.61 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=18.6
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
.+++++|++|+|||+++..+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la 22 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILC 22 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998875
No 335
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0034 Score=36.06 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 46799999999999999887643
No 336
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.62 E-value=0.0039 Score=35.93 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999887643
No 337
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.62 E-value=0.0022 Score=34.86 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=18.4
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|..++|||+|+..+...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999987643
No 338
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0039 Score=35.83 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999888653
No 339
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.62 E-value=0.0027 Score=34.49 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+++.|+.|+|||+|++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4779999999999999988864
No 340
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.0039 Score=35.97 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887653
No 341
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.004 Score=35.46 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999988764
No 342
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.61 E-value=0.0026 Score=35.17 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+++.|.+|+|||++.+.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999987754
No 343
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0037 Score=35.46 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887643
No 344
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.60 E-value=0.0043 Score=34.87 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999877653
No 345
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.60 E-value=0.0042 Score=34.85 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999887653
No 346
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.59 E-value=0.003 Score=35.38 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.4
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-.++++|+.|+|||++++.+..-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999877653
No 347
>PRK06547 hypothetical protein; Provisional
Probab=96.59 E-value=0.0034 Score=35.17 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
....+.+.|.+|+|||++...+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567778899999999999988653
No 348
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.59 E-value=0.0038 Score=35.22 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999887643
No 349
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.59 E-value=0.0039 Score=35.75 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4679999999999999988764
No 350
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.59 E-value=0.0045 Score=34.37 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+....
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887643
No 351
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.58 E-value=0.0042 Score=36.38 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999888643
No 352
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.58 E-value=0.0031 Score=37.32 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
++.++|++|+|||++++.+.+...
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 678999999999999988776443
No 353
>PRK06762 hypothetical protein; Provisional
Probab=96.57 E-value=0.003 Score=34.47 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=17.8
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|.+|+|||+++..+..
T Consensus 4 li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999987754
No 354
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.57 E-value=0.003 Score=39.06 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhh
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
...+|++++|.+++|||++++++.
T Consensus 56 ~~~~kiLLLG~geSGKSTi~KQ~r 79 (389)
T PF00503_consen 56 KREIKILLLGSGESGKSTILKQMR 79 (389)
T ss_dssp HEEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEECCCCcchhhHHHHHH
Confidence 357899999999999999999764
No 355
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.0029 Score=39.49 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
.|.++++|++|.|||+|++.+...++.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~ 47 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLS 47 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhcc
Confidence 589999999999999999997665444
No 356
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.57 E-value=0.0078 Score=33.31 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=20.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.-+++.|++|+|||+++..+....
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~g 38 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKRG 38 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 457899999999999998877653
No 357
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.57 E-value=0.0023 Score=36.49 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=16.8
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
-++++|+.|||||+.+.++.
T Consensus 3 vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHH
Confidence 46899999999998887655
No 358
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.57 E-value=0.0032 Score=34.11 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999886654
No 359
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0026 Score=37.45 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.2
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-++++|++|+|||++++-..+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 468999999999999997764
No 360
>PRK00625 shikimate kinase; Provisional
Probab=96.57 E-value=0.003 Score=35.45 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
+|+++|-+|+|||++...+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987754
No 361
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0044 Score=35.77 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999887653
No 362
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0048 Score=34.21 Aligned_cols=22 Identities=41% Similarity=0.416 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999988754
No 363
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.004 Score=35.69 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999887643
No 364
>COG1159 Era GTPase [General function prediction only]
Probab=96.56 E-value=0.0032 Score=38.33 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=22.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
+.-.+.++|.++||||+|++++++.+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki 31 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI 31 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce
Confidence 345678999999999999999998644
No 365
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.56 E-value=0.0033 Score=36.66 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEEECCCCCchHHHHHHhhcCcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~ 33 (57)
++++|++|+|||+|++-+...+-
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhc
Confidence 46789999999999998775544
No 366
>PTZ00258 GTP-binding protein; Provisional
Probab=96.56 E-value=0.0042 Score=38.99 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..+++.++|.+++|||+|++.+....
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~ 45 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ 45 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc
Confidence 45789999999999999999997643
No 367
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.56 E-value=0.0028 Score=35.94 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.2
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+++.|++|+|||+++..+..
T Consensus 4 ilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999987554
No 368
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.55 E-value=0.0045 Score=36.48 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999888643
No 369
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.55 E-value=0.0032 Score=36.21 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999988765
No 370
>PRK14526 adenylate kinase; Provisional
Probab=96.55 E-value=0.0032 Score=36.34 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
++++++|.+|+|||+++..+..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999987763
No 371
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.55 E-value=0.0048 Score=34.86 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887653
No 372
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.54 E-value=0.0047 Score=35.37 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999877643
No 373
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.54 E-value=0.0034 Score=38.75 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
...+++.|+.|+|||++++.+...-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4679999999999999999887653
No 374
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.54 E-value=0.0026 Score=36.75 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.9
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+.+.|.+|+|||+++..+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 45789999999999987764
No 375
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.53 E-value=0.0086 Score=40.30 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=26.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCccc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYI 38 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~ 38 (57)
...+.++|..++|||||+.++....+.....
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~ 274 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEA 274 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccccC
Confidence 4689999999999999999999887765433
No 376
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.53 E-value=0.0036 Score=39.89 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.9
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..+.++|.++||||||++|+.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~ 28 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI 28 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee
Confidence 5689999999999999999998643
No 377
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.53 E-value=0.0051 Score=34.88 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|+.-+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999888754
No 378
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.53 E-value=0.0031 Score=33.69 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.0
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.++++|.+|+|||++...+..
T Consensus 1 ~i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999988763
No 379
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.53 E-value=0.0051 Score=34.24 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887653
No 380
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.51 E-value=0.0044 Score=36.30 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887653
No 381
>PRK13947 shikimate kinase; Provisional
Probab=96.51 E-value=0.0036 Score=34.18 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.4
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
+|+++|.+|+|||++...+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999987654
No 382
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.51 E-value=0.0046 Score=35.36 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46789999999999999888653
No 383
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.51 E-value=0.0054 Score=33.98 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46799999999999999887653
No 384
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.51 E-value=0.003 Score=36.11 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+++.|++|+|||+++..+...
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999887653
No 385
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.51 E-value=0.0037 Score=36.71 Aligned_cols=23 Identities=13% Similarity=0.426 Sum_probs=19.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.|++|+|||+++..+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999999987753
No 386
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.50 E-value=0.0048 Score=33.36 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 45789999999999999887654
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=96.50 E-value=0.0035 Score=38.71 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+++++|.++||||||++++...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 46899999999999999999853
No 388
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.50 E-value=0.0052 Score=35.45 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999888653
No 389
>PRK14529 adenylate kinase; Provisional
Probab=96.49 E-value=0.0035 Score=36.60 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
++++++|.+|+||++...++..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999887654
No 390
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.49 E-value=0.0052 Score=35.68 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999877653
No 391
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.49 E-value=0.0032 Score=37.34 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||+++..+..
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 392
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.48 E-value=0.0057 Score=35.50 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 35799999999999999887653
No 393
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0056 Score=34.63 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999887754
No 394
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.48 E-value=0.0054 Score=35.16 Aligned_cols=22 Identities=41% Similarity=0.354 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999988764
No 395
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.47 E-value=0.0063 Score=35.34 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.0
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+.++|++|+|||+|++-+.+..-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 467999999999999998876543
No 396
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0055 Score=34.99 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 36799999999999999887653
No 397
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.47 E-value=0.0058 Score=34.49 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999877643
No 398
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.47 E-value=0.0054 Score=35.78 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887653
No 399
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.47 E-value=0.0051 Score=36.22 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4679999999999999987754
No 400
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.46 E-value=0.0032 Score=35.43 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=16.9
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
|.+.|++|+|||+|+.++..
T Consensus 2 IgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46789999999999997654
No 401
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.46 E-value=0.0052 Score=36.29 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999887643
No 402
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.46 E-value=0.0056 Score=34.87 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4679999999999999988764
No 403
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.45 E-value=0.0058 Score=35.18 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999887653
No 404
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.45 E-value=0.0057 Score=35.36 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 46799999999999999887643
No 405
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=96.45 E-value=0.005 Score=38.95 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|.+++|||||+.++...+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak 182 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK 182 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC
Confidence 67899999999999999998754
No 406
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.45 E-value=0.0044 Score=35.23 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.1
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
....+.++|..|+|||+++.++...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567789999999999999998754
No 407
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.44 E-value=0.006 Score=34.66 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 46799999999999999887653
No 408
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.44 E-value=0.0064 Score=33.49 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999988764
No 409
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.43 E-value=0.0042 Score=38.51 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=25.7
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
..+.+.+.++|.+++|||+|.++..+....
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~ 98 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVS 98 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccc
Confidence 356889999999999999999999987553
No 410
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.43 E-value=0.0036 Score=37.08 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.9
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|.+|+|||++++.+..
T Consensus 4 liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467789999999999998764
No 411
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.43 E-value=0.0056 Score=33.81 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+..-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 36799999999999999887643
No 412
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.43 E-value=0.0061 Score=35.30 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999988754
No 413
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.43 E-value=0.0052 Score=36.54 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999887653
No 414
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.43 E-value=0.006 Score=35.17 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999888653
No 415
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.004 Score=34.34 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=18.7
Q ss_pred eeeEEEECCCCCchHHHHHHhh
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~ 29 (57)
..-+++.|.+|+|||+++..+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~ 28 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALY 28 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3578899999999999998765
No 416
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0062 Score=35.18 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3579999999999999988764
No 417
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.42 E-value=0.0033 Score=35.70 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
++.++|..++|||+|+.+++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~ 21 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLY 21 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 418
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.42 E-value=0.006 Score=35.05 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 46799999999999999887653
No 419
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.0031 Score=37.36 Aligned_cols=19 Identities=47% Similarity=0.559 Sum_probs=16.7
Q ss_pred EEECCCCCchHHHHHHhhc
Q 035406 12 LLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 12 ~viG~~~vGKtsl~~~~~~ 30 (57)
.++|++|+|||+|++.+..
T Consensus 37 AlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 37 ALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 5889999999999998764
No 420
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.42 E-value=0.0058 Score=35.47 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999987765
No 421
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.41 E-value=0.0063 Score=35.22 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999988764
No 422
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.41 E-value=0.0044 Score=35.97 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4679999999999999988753
No 423
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.41 E-value=0.0055 Score=34.30 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=20.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
...++++|++|+|||.++..+..--+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45788999999999998887665433
No 424
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0069 Score=33.44 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999987764
No 425
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.41 E-value=0.0062 Score=34.99 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999887643
No 426
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0062 Score=34.93 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 45799999999999999988653
No 427
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.40 E-value=0.0062 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999988764
No 428
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0057 Score=36.06 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999999999887643
No 429
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.39 E-value=0.0041 Score=35.74 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=20.1
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+.++|++|+|||+|++-+.+..-
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999998887543
No 430
>PLN02200 adenylate kinase family protein
Probab=96.39 E-value=0.0051 Score=35.94 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.++++|.+|+|||+++.++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999887764
No 431
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.39 E-value=0.0063 Score=35.80 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887653
No 432
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.39 E-value=0.0053 Score=35.41 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=20.0
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+-+.+.|++|+|||+|+..+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356778999999999999987664
No 433
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.39 E-value=0.0037 Score=35.75 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+++.|++|+|||.|..+|...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYN 42 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHH
Confidence 4688999999999999998753
No 434
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=96.38 E-value=0.0054 Score=41.21 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.7
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
...++++++|.+|+|||++++.+....
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGek 142 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEV 142 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccc
Confidence 346789999999999999999998764
No 435
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.38 E-value=0.0047 Score=35.81 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999988764
No 436
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=96.38 E-value=0.0057 Score=38.12 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.9
Q ss_pred eeEEEECCCCCchHHHHHHhhcCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
+++.++|.+++|||+|++.+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998755
No 437
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.38 E-value=0.0058 Score=35.63 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=20.9
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVD 35 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~ 35 (57)
.+.++|++|+|||++++-+.+=+.+.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~ 52 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA 52 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC
Confidence 56789999999999999877654443
No 438
>PRK14527 adenylate kinase; Provisional
Probab=96.38 E-value=0.0045 Score=34.71 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.3
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
.-++++|++|+|||+++.++.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La 27 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLA 27 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999998876
No 439
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.37 E-value=0.0055 Score=37.75 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=19.7
Q ss_pred EEEECCCCCchHHHHHHhhcCcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~ 33 (57)
+.++|++|+|||+|++.+.+-.-
T Consensus 33 ~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 33 IVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred EEEECCCCCcHHHHHHHHHCCCC
Confidence 57999999999999998887543
No 440
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.37 E-value=0.0067 Score=35.25 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999988764
No 441
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.37 E-value=0.0056 Score=39.32 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
++.++|++|+|||+|++-+.+-..
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 678999999999999998876443
No 442
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.37 E-value=0.0049 Score=35.84 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 45799999999999999887643
No 443
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.37 E-value=0.0067 Score=35.62 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999877643
No 444
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.36 E-value=0.005 Score=34.29 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..++.++|..++|||+|+.++...
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~ 26 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGK 26 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCcEeechhhhhh
Confidence 578999999999999999998853
No 445
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.36 E-value=0.0046 Score=37.70 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-+++++|.+|+|||+|++.+..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998775
No 446
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.36 E-value=0.012 Score=35.85 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.2
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++.++|-++|||||+++++....-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc
Confidence 47799999999999999999998655
No 447
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.36 E-value=0.0071 Score=34.33 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+....
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999887653
No 448
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.36 E-value=0.0049 Score=35.71 Aligned_cols=22 Identities=41% Similarity=0.386 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3679999999999999998753
No 449
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.36 E-value=0.0043 Score=34.17 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.6
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
|++.|..|+|||+++.++..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998764
No 450
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.0054 Score=37.88 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=21.1
Q ss_pred EEEECCCCCchHHHHHHhhcCcCCC
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSYVD 35 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~~~ 35 (57)
+.++|++|+|||++++.+.+-+.++
T Consensus 31 vaLlGpSGaGKsTlLRiIAGLe~p~ 55 (345)
T COG1118 31 VALLGPSGAGKSTLLRIIAGLETPD 55 (345)
T ss_pred EEEECCCCCcHHHHHHHHhCcCCCC
Confidence 5689999999999999888766554
No 451
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.36 E-value=0.0068 Score=35.73 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+..-.
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999998877643
No 452
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.36 E-value=0.0043 Score=37.07 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.4
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+.++|+.|+|||||++.+..
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46889999999999998775
No 453
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.36 E-value=0.0072 Score=34.48 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999988764
No 454
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.35 E-value=0.0067 Score=37.24 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..|.++|.+++|||||+.++...
T Consensus 159 adVglVG~PNaGKSTLln~ls~a 181 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAA 181 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 455
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0079 Score=35.21 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=20.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+=|-+.|.+|+|||++++++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3446667889999999999998764
No 456
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.35 E-value=0.0059 Score=39.06 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.1
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
++.++|++|+|||||+....+-..
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 568999999999999998875443
No 457
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.35 E-value=0.0065 Score=34.64 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999988765
No 458
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0053 Score=34.47 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999998864
No 459
>PRK04182 cytidylate kinase; Provisional
Probab=96.35 E-value=0.0053 Score=33.54 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.2
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+.|++.|.+|+|||++...+..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998864
No 460
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.007 Score=34.67 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 36799999999999999877653
No 461
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.34 E-value=0.0069 Score=35.66 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887653
No 462
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.34 E-value=0.0051 Score=35.88 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46799999999999999888754
No 463
>PRK13768 GTPase; Provisional
Probab=96.34 E-value=0.0052 Score=36.18 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+.+++.|++|+|||+++.++..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 5688999999999998887663
No 464
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.34 E-value=0.0072 Score=35.25 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999888654
No 465
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.34 E-value=0.0072 Score=35.42 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999988764
No 466
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.33 E-value=0.0051 Score=36.34 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=18.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-.+++.|++|+|||+|+.-+..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHh
Confidence 34789999999999999887654
No 467
>PRK04040 adenylate kinase; Provisional
Probab=96.33 E-value=0.0055 Score=34.70 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||+++..+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999997754
No 468
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.33 E-value=0.0047 Score=35.79 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 35789999999999999887654
No 469
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.33 E-value=0.0049 Score=34.53 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.3
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+.+.|.+|+|||+++..+..
T Consensus 2 i~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999988764
No 470
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.33 E-value=0.0074 Score=34.46 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 46799999999999999887653
No 471
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.33 E-value=0.0045 Score=37.64 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 36799999999999999887653
No 472
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.33 E-value=0.0051 Score=33.47 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=17.5
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+++.|.+|+|||+++..+...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999999876653
No 473
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.33 E-value=0.004 Score=34.14 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=25.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
|+.++|..|+|||++.+...+.+. .+.-|-.++|+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~ 37 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFN 37 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeecc
Confidence 688999999999999998887654 23344444443
No 474
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.0069 Score=35.57 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4579999999999999987764
No 475
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.33 E-value=0.0048 Score=34.56 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=17.9
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-++++|.+|+|||+++..+..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999987664
No 476
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.32 E-value=0.0068 Score=34.48 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|+..+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46789999999999999888654
No 477
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.32 E-value=0.0054 Score=35.10 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 46799999999999999887653
No 478
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.32 E-value=0.0068 Score=34.44 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999988764
No 479
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.32 E-value=0.015 Score=37.20 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=29.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCc------CCCcccCCeeeeEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDS------YVDSYISTIGVDFV 46 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~------~~~~~~~tig~~~~ 46 (57)
..+|+.++|.+++|||+|++++++.+ .+..+...|-.+|.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e 222 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE 222 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE
Confidence 35899999999999999999998763 33344444544444
No 480
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.32 E-value=0.0039 Score=38.28 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=22.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
...-++++|-.|+|||+|++|+...-..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 4567889999999999999998764443
No 481
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.0052 Score=35.88 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4679999999999999988754
No 482
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.0048 Score=36.09 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+-
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999988764
No 483
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.31 E-value=0.0075 Score=34.58 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999887643
No 484
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0051 Score=34.82 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 46799999999999999877654
No 485
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.31 E-value=0.0051 Score=35.64 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++-+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4679999999999999887763
No 486
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0075 Score=35.89 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999888653
No 487
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.31 E-value=0.0062 Score=40.73 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=20.9
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
++.++|.+|+||||+++-+.+-..+
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999988765443
No 488
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.31 E-value=0.0055 Score=35.74 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887654
No 489
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.005 Score=35.10 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
+++++.|-+|+|||+++.++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 478999999999999999887
No 490
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0076 Score=33.22 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 45789999999999999887653
No 491
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.31 E-value=0.0077 Score=34.61 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|+.-+.+.
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999988864
No 492
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0064 Score=37.44 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=19.9
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+.++|++|+|||+|++-+.+-.-
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Confidence 457899999999999998876543
No 493
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.30 E-value=0.0043 Score=37.64 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
.|++++|.+++|||++++++.
T Consensus 1 ~klLlLG~geSGKSTi~KQmr 21 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMK 21 (317)
T ss_pred CeEEEecCCCccHHHHHHHHH
Confidence 489999999999999999876
No 494
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0073 Score=37.07 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999887653
No 495
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0088 Score=34.95 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999988643
No 496
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.29 E-value=0.016 Score=39.23 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=25.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSY 37 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~ 37 (57)
...+.++|..++|||||+.++....+....
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e 319 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVAAGE 319 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCccccc
Confidence 467899999999999999999887765443
No 497
>PTZ00301 uridine kinase; Provisional
Probab=96.29 E-value=0.005 Score=35.54 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=17.1
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
+=|.+.|.+|+|||+++..+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 456688999999999997653
No 498
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.29 E-value=0.0081 Score=33.91 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999988764
No 499
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.29 E-value=0.0061 Score=37.05 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
...++++.|..|+||||+++.+..++.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~ 64 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEV 64 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccC
Confidence 468899999999999999999886544
No 500
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.28 E-value=0.0075 Score=37.29 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++-+.+-.
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46799999999999999887653
Done!