Query 035406
Match_columns 57
No_of_seqs 108 out of 1099
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 03:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.5 4E-14 1.4E-18 80.1 4.9 46 6-51 11-56 (216)
2 2bcg_Y Protein YP2, GTP-bindin 99.3 1.3E-11 4.5E-16 67.8 6.5 51 1-51 1-51 (206)
3 2bme_A RAB4A, RAS-related prot 99.3 2.2E-11 7.7E-16 65.6 7.1 51 1-51 3-53 (186)
4 2fu5_C RAS-related protein RAB 99.3 3E-12 1E-16 69.0 3.6 51 1-51 1-51 (183)
5 3tw8_B RAS-related protein RAB 99.3 2E-11 6.7E-16 65.3 6.6 51 1-51 2-52 (181)
6 1ky3_A GTP-binding protein YPT 99.3 8.6E-12 3E-16 66.7 5.1 50 1-50 1-50 (182)
7 1vg8_A RAS-related protein RAB 99.2 2.5E-11 8.4E-16 66.4 6.5 51 1-51 1-51 (207)
8 1x3s_A RAS-related protein RAB 99.2 4.6E-11 1.6E-15 64.7 6.9 51 1-51 8-58 (195)
9 3bc1_A RAS-related protein RAB 99.2 4.3E-11 1.5E-15 64.4 6.6 46 1-46 3-49 (195)
10 3tkl_A RAS-related protein RAB 99.2 8.5E-11 2.9E-15 63.7 7.1 50 2-51 10-59 (196)
11 1gwn_A RHO-related GTP-binding 99.2 3.9E-11 1.3E-15 66.6 5.6 46 1-46 21-66 (205)
12 2fg5_A RAB-22B, RAS-related pr 99.2 6.4E-11 2.2E-15 64.6 6.2 49 2-50 17-65 (192)
13 2oil_A CATX-8, RAS-related pro 99.2 1.2E-10 4E-15 63.3 7.2 49 3-51 20-68 (193)
14 1oix_A RAS-related protein RAB 99.2 1.1E-10 3.9E-15 63.9 6.9 48 4-51 25-72 (191)
15 2f7s_A C25KG, RAS-related prot 99.2 9.7E-11 3.3E-15 64.7 6.6 49 4-52 21-69 (217)
16 2ew1_A RAS-related protein RAB 99.2 1.1E-10 3.8E-15 64.7 6.7 48 4-51 22-69 (201)
17 1z0f_A RAB14, member RAS oncog 99.2 1.2E-10 4.2E-15 62.0 6.7 48 3-50 10-57 (179)
18 1zbd_A Rabphilin-3A; G protein 99.2 2E-10 7E-15 62.8 7.5 48 3-50 3-50 (203)
19 1z2a_A RAS-related protein RAB 99.2 1.1E-10 3.8E-15 61.7 6.1 46 6-51 3-48 (168)
20 1z08_A RAS-related protein RAB 99.2 1.5E-10 5.2E-15 61.3 6.6 47 5-51 3-49 (170)
21 1wms_A RAB-9, RAB9, RAS-relate 99.2 1.6E-10 5.4E-15 61.7 6.6 47 5-51 4-50 (177)
22 2fn4_A P23, RAS-related protei 99.2 1.6E-10 5.4E-15 61.7 6.6 46 1-46 2-47 (181)
23 2gf9_A RAS-related protein RAB 99.1 2.8E-10 9.6E-15 61.7 7.1 46 5-50 19-64 (189)
24 1z0j_A RAB-22, RAS-related pro 99.1 2.7E-10 9.3E-15 60.2 6.9 47 5-51 3-49 (170)
25 3clv_A RAB5 protein, putative; 99.1 1.8E-10 6.2E-15 62.2 6.2 46 6-51 5-50 (208)
26 2hup_A RAS-related protein RAB 99.1 1.2E-10 4.1E-15 64.1 5.6 47 5-51 26-72 (201)
27 1r2q_A RAS-related protein RAB 99.1 2.9E-10 9.8E-15 60.1 6.8 46 5-50 3-48 (170)
28 3c5c_A RAS-like protein 12; GD 99.1 2.3E-10 7.9E-15 62.3 6.5 42 6-47 19-60 (187)
29 2hxs_A RAB-26, RAS-related pro 99.1 5.2E-11 1.8E-15 63.7 3.8 47 5-51 3-49 (178)
30 3dz8_A RAS-related protein RAB 99.1 3.8E-11 1.3E-15 65.4 3.3 50 2-51 17-66 (191)
31 2a5j_A RAS-related protein RAB 99.1 2.1E-10 7.2E-15 62.4 6.2 48 4-51 17-64 (191)
32 1ek0_A Protein (GTP-binding pr 99.1 3.6E-10 1.2E-14 59.7 6.7 45 7-51 2-46 (170)
33 3kkq_A RAS-related protein M-R 99.1 3.5E-10 1.2E-14 60.8 6.7 44 3-46 13-56 (183)
34 2y8e_A RAB-protein 6, GH09086P 99.1 3.4E-10 1.2E-14 60.3 6.6 46 6-51 12-57 (179)
35 2il1_A RAB12; G-protein, GDP, 99.1 2.2E-10 7.5E-15 62.6 5.8 48 4-51 22-69 (192)
36 1z06_A RAS-related protein RAB 99.1 3.4E-10 1.1E-14 61.4 6.3 46 6-51 18-63 (189)
37 2iwr_A Centaurin gamma 1; ANK 99.1 2.5E-10 8.5E-15 61.2 5.6 40 6-46 5-44 (178)
38 2f9l_A RAB11B, member RAS onco 99.1 3.9E-10 1.3E-14 61.8 6.5 46 6-51 3-48 (199)
39 2efe_B Small GTP-binding prote 99.1 4.2E-10 1.4E-14 60.2 6.4 47 5-51 9-55 (181)
40 1m7b_A RND3/RHOE small GTP-bin 99.1 2.8E-10 9.7E-15 61.6 5.6 42 5-46 4-45 (184)
41 2o52_A RAS-related protein RAB 99.1 2.3E-10 7.9E-15 62.9 5.3 47 5-51 22-68 (200)
42 3q3j_B RHO-related GTP-binding 99.1 3.8E-10 1.3E-14 62.8 6.2 41 6-46 25-65 (214)
43 3reg_A RHO-like small GTPase; 99.1 6.3E-10 2.2E-14 60.5 6.8 44 5-48 20-63 (194)
44 1g16_A RAS-related protein SEC 99.1 3.1E-10 1.1E-14 60.0 5.2 45 7-51 2-46 (170)
45 2p5s_A RAS and EF-hand domain 99.1 3E-10 1E-14 62.2 5.2 45 6-50 26-70 (199)
46 3cpj_B GTP-binding protein YPT 99.1 4.9E-10 1.7E-14 62.4 6.0 46 6-51 11-56 (223)
47 2zej_A Dardarin, leucine-rich 99.0 3E-10 1E-14 61.7 4.6 42 8-49 2-45 (184)
48 2g6b_A RAS-related protein RAB 99.0 1.4E-09 4.7E-14 58.1 6.9 46 4-49 6-52 (180)
49 2j0v_A RAC-like GTP-binding pr 99.0 6.3E-10 2.2E-14 61.2 5.6 41 6-46 7-47 (212)
50 1zd9_A ADP-ribosylation factor 99.0 7.1E-10 2.4E-14 60.2 5.7 42 6-47 20-61 (188)
51 3cph_A RAS-related protein SEC 99.0 1E-09 3.6E-14 60.1 6.1 46 6-51 18-63 (213)
52 1c1y_A RAS-related protein RAP 99.0 1.1E-09 3.9E-14 57.7 5.9 39 8-46 3-41 (167)
53 2atx_A Small GTP binding prote 99.0 1.1E-09 3.9E-14 59.4 5.9 41 6-46 16-56 (194)
54 3t5g_A GTP-binding protein RHE 99.0 1.6E-09 5.6E-14 58.1 6.4 40 6-45 4-43 (181)
55 3l0i_B RAS-related protein RAB 99.0 9.4E-11 3.2E-15 64.2 1.5 50 2-51 27-76 (199)
56 4bas_A ADP-ribosylation factor 99.0 7.8E-10 2.7E-14 60.0 5.1 42 5-46 14-56 (199)
57 2a9k_A RAS-related protein RAL 99.0 1.9E-09 6.6E-14 57.7 6.5 43 5-47 15-57 (187)
58 1mh1_A RAC1; GTP-binding, GTPa 99.0 2.2E-09 7.6E-14 57.5 6.6 41 6-46 3-43 (186)
59 2q3h_A RAS homolog gene family 99.0 1.2E-09 4E-14 59.7 5.5 43 5-47 17-59 (201)
60 2atv_A RERG, RAS-like estrogen 99.0 2.1E-09 7.1E-14 58.6 6.4 42 6-47 26-67 (196)
61 2bov_A RAla, RAS-related prote 99.0 2.6E-09 8.7E-14 58.2 6.6 42 6-47 12-53 (206)
62 2erx_A GTP-binding protein DI- 99.0 3.1E-09 1.1E-13 56.1 6.7 41 7-47 2-42 (172)
63 3ihw_A Centg3; RAS, centaurin, 99.0 3E-09 1E-13 57.9 6.7 40 6-46 18-57 (184)
64 3bwd_D RAC-like GTP-binding pr 99.0 4.4E-10 1.5E-14 60.2 3.3 42 5-46 5-46 (182)
65 1u8z_A RAS-related protein RAL 99.0 3.3E-09 1.1E-13 55.7 6.6 41 7-47 3-43 (168)
66 1kao_A RAP2A; GTP-binding prot 99.0 3.5E-09 1.2E-13 55.6 6.6 38 8-45 3-40 (167)
67 3gj0_A GTP-binding nuclear pro 99.0 5.8E-10 2E-14 61.9 3.7 46 5-50 12-57 (221)
68 2g3y_A GTP-binding protein GEM 98.9 2.2E-09 7.7E-14 60.2 5.8 45 5-50 34-80 (211)
69 3cbq_A GTP-binding protein REM 98.9 1.2E-09 4E-14 60.1 4.6 46 5-50 20-65 (195)
70 2gf0_A GTP-binding protein DI- 98.9 3.5E-09 1.2E-13 57.4 6.2 42 6-47 6-47 (199)
71 2gco_A H9, RHO-related GTP-bin 98.9 2.7E-09 9.4E-14 58.5 5.7 43 6-48 23-65 (201)
72 3oes_A GTPase rhebl1; small GT 98.9 3.2E-09 1.1E-13 58.2 5.8 40 6-45 22-61 (201)
73 3con_A GTPase NRAS; structural 98.9 5.8E-09 2E-13 56.4 6.7 41 6-46 19-59 (190)
74 2j1l_A RHO-related GTP-binding 98.9 3.9E-09 1.3E-13 58.5 5.8 41 7-47 33-73 (214)
75 2yc2_C IFT27, small RAB-relate 98.9 4E-10 1.4E-14 61.4 1.7 46 6-51 18-65 (208)
76 4dsu_A GTPase KRAS, isoform 2B 98.9 7.8E-09 2.7E-13 55.4 6.7 40 7-46 3-42 (189)
77 2fv8_A H6, RHO-related GTP-bin 98.9 4.6E-09 1.6E-13 57.8 5.7 43 6-48 23-65 (207)
78 3t1o_A Gliding protein MGLA; G 98.9 2.1E-09 7.2E-14 58.0 4.1 43 5-48 11-64 (198)
79 2nzj_A GTP-binding protein REM 98.9 6E-09 2.1E-13 55.3 5.7 43 7-50 3-45 (175)
80 2ce2_X GTPase HRAS; signaling 98.9 8.7E-09 3E-13 53.9 6.2 39 8-46 3-41 (166)
81 4djt_A GTP-binding nuclear pro 98.9 2.9E-09 9.9E-14 58.8 4.4 46 5-50 8-53 (218)
82 4gzl_A RAS-related C3 botulinu 98.9 7.4E-09 2.5E-13 57.0 5.8 41 6-46 28-68 (204)
83 1ksh_A ARF-like protein 2; sma 98.9 8.9E-09 3E-13 55.4 6.0 39 6-45 16-54 (186)
84 2cjw_A GTP-binding protein GEM 98.8 7.8E-09 2.7E-13 56.6 5.3 44 6-50 4-49 (192)
85 2lkc_A Translation initiation 98.8 4.7E-09 1.6E-13 55.9 4.3 43 6-48 6-48 (178)
86 1upt_A ARL1, ADP-ribosylation 98.8 1.4E-08 4.8E-13 53.7 5.9 39 7-46 6-44 (171)
87 2h57_A ADP-ribosylation factor 98.8 9E-09 3.1E-13 55.8 4.9 39 6-44 19-58 (190)
88 3q85_A GTP-binding protein REM 98.8 1.4E-08 4.7E-13 53.7 5.5 43 8-50 2-44 (169)
89 2h17_A ADP-ribosylation factor 98.8 4.1E-09 1.4E-13 56.8 3.4 40 6-46 19-58 (181)
90 2wjg_A FEOB, ferrous iron tran 98.8 1.7E-08 5.9E-13 54.3 5.7 44 7-50 6-49 (188)
91 3c5h_A Glucocorticoid receptor 98.8 3.8E-09 1.3E-13 60.4 3.1 42 5-46 16-70 (255)
92 1zj6_A ADP-ribosylation factor 98.8 6.9E-09 2.4E-13 56.1 4.0 39 6-45 14-52 (187)
93 2wji_A Ferrous iron transport 98.8 1.6E-08 5.6E-13 53.9 5.3 40 8-47 3-42 (165)
94 1r8s_A ADP-ribosylation factor 98.8 1.1E-08 3.6E-13 53.9 4.3 35 9-44 1-35 (164)
95 1moz_A ARL1, ADP-ribosylation 98.7 6.6E-09 2.2E-13 55.7 3.0 39 6-45 16-54 (183)
96 2fh5_B SR-beta, signal recogni 98.7 1.8E-08 6.1E-13 55.4 4.8 41 6-47 5-45 (214)
97 1fzq_A ADP-ribosylation factor 98.7 1.7E-08 5.8E-13 54.6 4.3 38 6-44 14-51 (181)
98 3dpu_A RAB family protein; roc 98.7 1.6E-08 5.6E-13 62.8 4.6 44 5-48 38-81 (535)
99 2b6h_A ADP-ribosylation factor 98.7 8.4E-09 2.9E-13 56.3 3.0 39 6-45 27-65 (192)
100 2cxx_A Probable GTP-binding pr 98.7 2.2E-08 7.5E-13 53.8 4.3 36 9-44 2-37 (190)
101 1m2o_B GTP-binding protein SAR 98.7 4E-08 1.4E-12 53.5 5.2 38 7-45 22-59 (190)
102 2x77_A ADP-ribosylation factor 98.7 1.9E-08 6.5E-13 54.3 3.5 39 6-45 20-58 (189)
103 2wkq_A NPH1-1, RAS-related C3 98.7 7.5E-08 2.6E-12 55.7 6.1 41 7-47 154-194 (332)
104 1f6b_A SAR1; gtpases, N-termin 98.6 2.7E-08 9.1E-13 54.6 3.8 39 7-46 24-62 (198)
105 1nrj_B SR-beta, signal recogni 98.6 2.3E-08 7.9E-13 55.1 3.3 41 5-45 9-52 (218)
106 1svi_A GTP-binding protein YSX 98.6 4.2E-08 1.4E-12 53.0 4.1 39 7-45 22-60 (195)
107 3th5_A RAS-related C3 botulinu 98.1 3.9E-09 1.3E-13 57.8 0.0 41 6-46 28-68 (204)
108 3q72_A GTP-binding protein RAD 98.6 6.5E-08 2.2E-12 51.0 4.5 38 8-46 2-39 (166)
109 3r7w_B Gtpase2, GTP-binding pr 98.6 3.5E-08 1.2E-12 59.2 3.7 38 10-47 1-41 (331)
110 3r7w_A Gtpase1, GTP-binding pr 98.6 1.4E-07 4.8E-12 55.3 6.1 43 7-49 2-47 (307)
111 2ged_A SR-beta, signal recogni 98.6 3.7E-08 1.3E-12 53.3 3.4 39 6-44 46-87 (193)
112 2hf9_A Probable hydrogenase ni 98.5 3.2E-08 1.1E-12 54.9 2.3 40 7-46 37-76 (226)
113 3pqc_A Probable GTP-binding pr 98.5 1.7E-07 5.8E-12 50.4 4.8 39 6-45 21-59 (195)
114 3o47_A ADP-ribosylation factor 98.5 4.8E-08 1.6E-12 57.8 2.7 41 7-48 164-204 (329)
115 3a1s_A Iron(II) transport prot 98.5 1.8E-07 6.1E-12 53.8 4.8 43 6-48 3-45 (258)
116 3k53_A Ferrous iron transport 98.5 2.1E-07 7.2E-12 53.4 4.9 44 8-51 3-46 (271)
117 3llu_A RAS-related GTP-binding 98.5 8E-08 2.7E-12 52.4 2.8 39 5-46 17-55 (196)
118 3lxx_A GTPase IMAP family memb 98.5 3.7E-07 1.3E-11 51.3 5.6 34 6-39 27-60 (239)
119 2dyk_A GTP-binding protein; GT 98.5 3.5E-07 1.2E-11 47.8 5.1 26 9-34 2-27 (161)
120 3t5d_A Septin-7; GTP-binding p 98.5 2.5E-07 8.6E-12 53.2 4.6 45 6-50 6-58 (274)
121 2qu8_A Putative nucleolar GTP- 98.5 2.4E-07 8.2E-12 51.7 4.4 29 6-34 27-55 (228)
122 3lvq_E ARF-GAP with SH3 domain 98.4 5.6E-07 1.9E-11 55.3 5.9 41 6-47 320-360 (497)
123 2gj8_A MNME, tRNA modification 98.4 9.3E-07 3.2E-11 47.5 5.5 27 7-33 3-29 (172)
124 1pui_A ENGB, probable GTP-bind 98.3 5.1E-07 1.8E-11 49.3 3.8 39 7-45 25-63 (210)
125 3i8s_A Ferrous iron transport 98.3 6.5E-07 2.2E-11 51.7 4.4 43 8-50 3-45 (274)
126 2xtp_A GTPase IMAP family memb 98.3 1.5E-06 5.3E-11 49.2 5.6 34 7-40 21-55 (260)
127 3lxw_A GTPase IMAP family memb 98.3 1.3E-06 4.5E-11 49.7 4.6 30 6-35 19-48 (247)
128 3iby_A Ferrous iron transport 98.3 1.3E-06 4.3E-11 50.3 4.6 43 9-51 2-44 (256)
129 3b1v_A Ferrous iron uptake tra 98.2 2.4E-06 8.3E-11 49.6 4.9 32 8-39 3-34 (272)
130 2qag_A Septin-2, protein NEDD5 98.2 2.3E-06 7.8E-11 51.3 4.4 42 7-48 36-86 (361)
131 4dhe_A Probable GTP-binding pr 98.2 1.7E-06 5.8E-11 47.6 3.3 27 7-33 28-54 (223)
132 3def_A T7I23.11 protein; chlor 98.0 1.9E-05 6.4E-10 45.1 6.0 27 7-33 35-61 (262)
133 2hjg_A GTP-binding protein ENG 98.0 7.9E-06 2.7E-10 49.8 4.3 28 7-34 174-201 (436)
134 2qag_C Septin-7; cell cycle, c 98.0 1.6E-05 5.4E-10 48.8 5.4 28 7-34 30-57 (418)
135 1wf3_A GTP-binding protein; GT 98.0 1.1E-05 3.6E-10 47.4 4.3 33 1-34 1-33 (301)
136 2qnr_A Septin-2, protein NEDD5 98.0 6.6E-06 2.2E-10 48.3 3.3 30 7-36 17-47 (301)
137 2aka_B Dynamin-1; fusion prote 97.9 7.5E-06 2.6E-10 46.9 3.4 28 7-34 25-52 (299)
138 1h65_A Chloroplast outer envel 97.9 9.4E-06 3.2E-10 46.5 3.5 27 7-33 38-64 (270)
139 4dcu_A GTP-binding protein ENG 97.8 1.2E-05 3.9E-10 49.3 2.9 38 6-44 21-58 (456)
140 1kk1_A EIF2gamma; initiation o 97.8 7.3E-05 2.5E-09 45.2 6.1 43 5-47 7-54 (410)
141 1s0u_A EIF-2-gamma, translatio 97.8 5.8E-05 2E-09 45.7 5.5 43 6-48 6-53 (408)
142 1mky_A Probable GTP-binding pr 97.8 2.7E-05 9.2E-10 47.5 4.1 25 9-33 2-26 (439)
143 3t34_A Dynamin-related protein 97.8 3.1E-05 1.1E-09 46.0 4.1 27 8-34 34-60 (360)
144 1mky_A Probable GTP-binding pr 97.7 4E-05 1.4E-09 46.7 4.5 27 7-33 179-205 (439)
145 2wsm_A Hydrogenase expression/ 97.7 1.4E-05 4.9E-10 44.0 2.1 25 8-32 30-54 (221)
146 1ega_A Protein (GTP-binding pr 97.6 5.7E-05 1.9E-09 44.2 3.9 28 6-33 6-33 (301)
147 3iev_A GTP-binding protein ERA 97.6 7.3E-05 2.5E-09 43.8 4.3 30 5-34 7-36 (308)
148 1jal_A YCHF protein; nucleotid 97.6 5.2E-05 1.8E-09 45.9 3.5 26 8-33 2-27 (363)
149 2hjg_A GTP-binding protein ENG 97.6 3.1E-05 1.1E-09 47.2 2.5 35 8-43 3-37 (436)
150 3gee_A MNME, tRNA modification 97.6 6E-05 2E-09 46.9 3.7 25 8-32 233-257 (476)
151 3sop_A Neuronal-specific septi 97.6 4.5E-05 1.5E-09 44.2 3.0 24 8-31 2-25 (270)
152 4dcu_A GTP-binding protein ENG 97.6 5.7E-05 2E-09 46.2 3.4 26 7-32 194-219 (456)
153 3qq5_A Small GTP-binding prote 97.6 2.4E-05 8.3E-10 48.0 1.6 28 6-33 32-59 (423)
154 1jwy_B Dynamin A GTPase domain 97.6 6E-05 2.1E-09 43.6 3.1 27 7-33 23-49 (315)
155 2x2e_A Dynamin-1; nitration, h 97.6 4.5E-05 1.5E-09 45.3 2.6 28 7-34 30-57 (353)
156 2ohf_A Protein OLA1, GTP-bindi 97.5 9.6E-05 3.3E-09 45.3 3.9 28 7-34 21-48 (396)
157 1knq_A Gluconate kinase; ALFA/ 97.5 8.5E-05 2.9E-09 39.7 3.3 30 1-30 1-30 (175)
158 1kgd_A CASK, peripheral plasma 97.5 7.1E-05 2.4E-09 40.5 2.8 21 10-30 7-27 (180)
159 2e87_A Hypothetical protein PH 97.5 0.00018 6.2E-09 42.8 4.8 27 7-33 166-192 (357)
160 1ye8_A Protein THEP1, hypothet 97.5 8.6E-05 2.9E-09 40.6 3.0 22 9-30 1-22 (178)
161 3geh_A MNME, tRNA modification 97.5 2.7E-05 9.1E-10 48.3 0.9 27 7-33 223-249 (462)
162 2qtf_A Protein HFLX, GTP-bindi 97.5 0.00014 4.8E-09 43.8 4.0 26 9-34 179-205 (364)
163 3sjy_A Translation initiation 97.4 0.00018 6E-09 43.5 4.2 27 5-31 5-31 (403)
164 1ex7_A Guanylate kinase; subst 97.4 0.0001 3.5E-09 40.9 3.0 20 11-30 4-23 (186)
165 1lvg_A Guanylate kinase, GMP k 97.4 0.00011 3.7E-09 40.5 2.8 21 10-30 6-26 (198)
166 3izy_P Translation initiation 97.4 2.3E-05 7.8E-10 49.5 0.1 38 8-45 4-41 (537)
167 3cnl_A YLQF, putative uncharac 97.4 0.00013 4.5E-09 42.1 3.2 34 9-43 100-133 (262)
168 1wxq_A GTP-binding protein; st 97.3 0.00014 4.8E-09 44.2 2.9 24 9-32 1-24 (397)
169 3a00_A Guanylate kinase, GMP k 97.3 0.00015 5.2E-09 39.4 2.8 20 11-30 4-23 (186)
170 3j2k_7 ERF3, eukaryotic polype 97.3 0.00061 2.1E-08 41.7 5.6 25 6-30 15-39 (439)
171 1s96_A Guanylate kinase, GMP k 97.3 0.00016 5.5E-09 40.8 2.8 22 10-31 18-39 (219)
172 1xzp_A Probable tRNA modificat 97.3 5.7E-05 2E-09 47.0 0.9 26 8-33 243-268 (482)
173 3tr0_A Guanylate kinase, GMP k 97.3 0.00018 6.1E-09 39.1 2.8 22 10-31 9-30 (205)
174 2qpt_A EH domain-containing pr 97.3 0.00033 1.1E-08 44.2 4.3 29 6-34 63-91 (550)
175 1zp6_A Hypothetical protein AT 97.3 0.00018 6E-09 38.8 2.7 23 9-31 10-32 (191)
176 3tau_A Guanylate kinase, GMP k 97.3 0.0002 6.8E-09 39.6 2.8 22 10-31 10-31 (208)
177 2j69_A Bacterial dynamin-like 97.3 0.00039 1.3E-08 44.8 4.4 27 7-33 68-94 (695)
178 3ney_A 55 kDa erythrocyte memb 97.2 0.00023 7.8E-09 39.9 3.0 21 10-30 21-41 (197)
179 1z6g_A Guanylate kinase; struc 97.2 0.00022 7.5E-09 39.8 2.8 21 10-30 25-45 (218)
180 1znw_A Guanylate kinase, GMP k 97.2 0.00024 8.1E-09 39.2 2.8 21 10-30 22-42 (207)
181 1wb1_A Translation elongation 97.2 0.00049 1.7E-08 42.7 4.3 27 6-32 17-43 (482)
182 2qor_A Guanylate kinase; phosp 97.2 0.00029 9.9E-09 38.7 3.0 22 9-30 13-34 (204)
183 1puj_A YLQF, conserved hypothe 97.2 0.00032 1.1E-08 40.8 3.2 26 7-32 119-144 (282)
184 4gp7_A Metallophosphoesterase; 97.2 0.00026 8.7E-09 38.1 2.6 18 10-27 11-28 (171)
185 3lw7_A Adenylate kinase relate 97.2 0.00034 1.2E-08 36.6 3.0 20 9-28 2-21 (179)
186 1ni3_A YCHF GTPase, YCHF GTP-b 97.2 0.00055 1.9E-08 41.8 4.2 27 7-33 19-45 (392)
187 3kb2_A SPBC2 prophage-derived 97.2 0.00032 1.1E-08 36.9 2.9 21 10-30 3-23 (173)
188 3fb4_A Adenylate kinase; psych 97.2 0.00035 1.2E-08 38.4 3.1 22 9-30 1-22 (216)
189 1jbk_A CLPB protein; beta barr 97.1 0.00033 1.1E-08 36.9 2.8 22 9-30 44-65 (195)
190 3dl0_A Adenylate kinase; phosp 97.1 0.00038 1.3E-08 38.3 3.1 22 9-30 1-22 (216)
191 2qag_B Septin-6, protein NEDD5 97.1 0.00033 1.1E-08 43.3 3.1 26 8-33 42-67 (427)
192 1zun_B Sulfate adenylate trans 97.1 0.00061 2.1E-08 41.5 4.0 26 6-31 22-47 (434)
193 2wwf_A Thymidilate kinase, put 97.1 0.00052 1.8E-08 37.4 3.3 24 7-30 9-32 (212)
194 1qhx_A CPT, protein (chloramph 97.1 0.00044 1.5E-08 36.8 3.0 22 9-30 4-25 (178)
195 2j41_A Guanylate kinase; GMP, 97.1 0.0004 1.4E-08 37.7 2.8 24 9-32 7-30 (207)
196 3c8u_A Fructokinase; YP_612366 97.1 0.00044 1.5E-08 38.1 2.9 23 8-30 22-44 (208)
197 2dby_A GTP-binding protein; GD 97.1 0.00033 1.1E-08 42.4 2.6 24 9-32 2-25 (368)
198 1ly1_A Polynucleotide kinase; 97.1 0.00048 1.6E-08 36.5 3.0 22 9-30 3-24 (181)
199 1kag_A SKI, shikimate kinase I 97.1 0.00046 1.6E-08 36.6 2.8 22 9-30 5-26 (173)
200 2ehv_A Hypothetical protein PH 97.0 0.00049 1.7E-08 38.2 3.0 20 10-29 32-51 (251)
201 1uf9_A TT1252 protein; P-loop, 97.0 0.00056 1.9E-08 37.0 3.2 29 3-31 3-31 (203)
202 2bdt_A BH3686; alpha-beta prot 97.0 0.00049 1.7E-08 37.1 2.9 21 10-30 4-24 (189)
203 3izq_1 HBS1P, elongation facto 97.0 0.00059 2E-08 43.5 3.6 26 6-31 165-190 (611)
204 3ec2_A DNA replication protein 97.0 0.00037 1.3E-08 37.4 2.3 22 9-30 39-60 (180)
205 2bbw_A Adenylate kinase 4, AK4 97.0 0.00057 2E-08 38.4 3.2 21 9-29 28-48 (246)
206 2jaq_A Deoxyguanosine kinase; 97.0 0.00061 2.1E-08 36.8 3.1 21 10-30 2-22 (205)
207 3t61_A Gluconokinase; PSI-biol 97.0 0.00054 1.8E-08 37.4 2.9 22 9-30 19-40 (202)
208 3vaa_A Shikimate kinase, SK; s 97.0 0.00063 2.1E-08 37.2 3.2 22 9-30 26-47 (199)
209 4eun_A Thermoresistant glucoki 97.0 0.00053 1.8E-08 37.5 2.8 22 9-30 30-51 (200)
210 3p26_A Elongation factor 1 alp 97.0 0.00043 1.5E-08 42.8 2.7 26 6-31 31-56 (483)
211 3asz_A Uridine kinase; cytidin 97.0 0.00056 1.9E-08 37.4 2.9 23 8-30 6-28 (211)
212 1htw_A HI0065; nucleotide-bind 97.0 0.00055 1.9E-08 36.9 2.8 23 10-32 35-57 (158)
213 1jny_A EF-1-alpha, elongation 97.0 0.00058 2E-08 41.7 3.2 26 6-31 4-29 (435)
214 1f60_A Elongation factor EEF1A 97.0 0.00074 2.5E-08 41.6 3.6 30 1-31 1-30 (458)
215 3tif_A Uncharacterized ABC tra 97.0 0.00068 2.3E-08 38.5 3.3 21 11-31 34-54 (235)
216 1nks_A Adenylate kinase; therm 97.0 0.00065 2.2E-08 36.3 3.1 22 9-30 2-23 (194)
217 1g7s_A Translation initiation 97.0 0.00059 2E-08 43.5 3.1 39 8-46 5-47 (594)
218 2www_A Methylmalonic aciduria 97.0 0.00068 2.3E-08 40.4 3.2 23 8-30 74-96 (349)
219 3sr0_A Adenylate kinase; phosp 97.0 0.0007 2.4E-08 37.9 3.1 22 9-30 1-22 (206)
220 1dar_A EF-G, elongation factor 97.0 0.00083 2.8E-08 43.3 3.8 28 3-30 7-34 (691)
221 2c78_A Elongation factor TU-A; 96.9 0.0008 2.7E-08 40.6 3.5 25 6-30 9-33 (405)
222 1lnz_A SPO0B-associated GTP-bi 96.9 0.00042 1.5E-08 41.4 2.1 23 10-32 160-182 (342)
223 3uie_A Adenylyl-sulfate kinase 96.9 0.00067 2.3E-08 37.1 2.8 22 9-30 26-47 (200)
224 1kht_A Adenylate kinase; phosp 96.9 0.00085 2.9E-08 35.8 3.1 22 9-30 4-25 (192)
225 3mca_A HBS1, elongation factor 96.9 0.00091 3.1E-08 42.5 3.7 25 6-30 175-199 (592)
226 3trf_A Shikimate kinase, SK; a 96.9 0.00086 2.9E-08 35.9 3.1 22 9-30 6-27 (185)
227 1d2e_A Elongation factor TU (E 96.9 0.0009 3.1E-08 40.4 3.5 25 7-31 2-26 (397)
228 4a74_A DNA repair and recombin 96.9 0.00063 2.2E-08 37.3 2.6 21 10-30 27-47 (231)
229 2cdn_A Adenylate kinase; phosp 96.9 0.00099 3.4E-08 36.3 3.3 24 7-30 19-42 (201)
230 2p65_A Hypothetical protein PF 96.9 0.00056 1.9E-08 36.1 2.3 22 9-30 44-65 (187)
231 1qf9_A UMP/CMP kinase, protein 96.9 0.0011 3.9E-08 35.3 3.5 22 9-30 7-28 (194)
232 3bos_A Putative DNA replicatio 96.9 0.00077 2.6E-08 36.9 2.8 22 9-30 53-74 (242)
233 2pcj_A ABC transporter, lipopr 96.9 0.00085 2.9E-08 37.8 3.0 21 11-31 33-53 (224)
234 1y63_A LMAJ004144AAA protein; 96.9 0.001 3.5E-08 36.0 3.2 24 8-31 10-33 (184)
235 3cm0_A Adenylate kinase; ATP-b 96.9 0.0011 3.9E-08 35.4 3.3 22 9-30 5-26 (186)
236 2onk_A Molybdate/tungstate ABC 96.9 0.0011 3.8E-08 37.8 3.4 22 10-31 26-47 (240)
237 1zcb_A G alpha I/13; GTP-bindi 96.9 0.00096 3.3E-08 40.2 3.3 24 6-29 31-54 (362)
238 1cke_A CK, MSSA, protein (cyti 96.8 0.001 3.4E-08 36.6 3.1 22 9-30 6-27 (227)
239 1e4v_A Adenylate kinase; trans 96.8 0.00084 2.9E-08 37.0 2.8 22 9-30 1-22 (214)
240 1b0u_A Histidine permease; ABC 96.8 0.0011 3.7E-08 38.2 3.3 21 11-31 35-55 (262)
241 2ff7_A Alpha-hemolysin translo 96.8 0.0012 4.1E-08 37.7 3.5 23 10-32 37-59 (247)
242 2if2_A Dephospho-COA kinase; a 96.8 0.00083 2.8E-08 36.5 2.7 22 9-30 2-23 (204)
243 1mv5_A LMRA, multidrug resista 96.8 0.0014 4.8E-08 37.2 3.7 22 10-31 30-51 (243)
244 1njg_A DNA polymerase III subu 96.8 0.00094 3.2E-08 36.2 2.9 21 10-30 47-67 (250)
245 2i3b_A HCR-ntpase, human cance 96.8 0.00089 3E-08 37.0 2.8 21 10-30 3-23 (189)
246 3lnc_A Guanylate kinase, GMP k 96.8 0.00049 1.7E-08 38.3 1.7 20 10-29 29-48 (231)
247 2cbz_A Multidrug resistance-as 96.8 0.001 3.5E-08 37.8 3.0 22 10-31 33-54 (237)
248 4g1u_C Hemin import ATP-bindin 96.8 0.0013 4.5E-08 38.0 3.5 22 11-32 40-61 (266)
249 2pt5_A Shikimate kinase, SK; a 96.8 0.0012 4.1E-08 34.8 3.2 22 9-30 1-22 (168)
250 3tlx_A Adenylate kinase 2; str 96.8 0.0012 4.2E-08 37.3 3.4 24 7-30 28-51 (243)
251 2rhm_A Putative kinase; P-loop 96.8 0.0012 4E-08 35.4 3.1 22 9-30 6-27 (193)
252 1lw7_A Transcriptional regulat 96.8 0.00081 2.8E-08 40.0 2.7 24 8-31 170-193 (365)
253 1u0l_A Probable GTPase ENGC; p 96.8 0.0011 3.9E-08 38.6 3.3 23 10-32 171-193 (301)
254 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.001 3.5E-08 36.4 2.9 21 10-30 25-45 (235)
255 2chg_A Replication factor C sm 96.8 0.001 3.6E-08 35.7 2.9 21 10-30 40-60 (226)
256 1gvn_B Zeta; postsegregational 96.8 0.00093 3.2E-08 38.9 2.8 23 8-30 33-55 (287)
257 1g6h_A High-affinity branched- 96.8 0.0012 4.1E-08 37.9 3.3 23 10-32 35-57 (257)
258 2pze_A Cystic fibrosis transme 96.8 0.0013 4.5E-08 37.1 3.3 23 10-32 36-58 (229)
259 3gfo_A Cobalt import ATP-bindi 96.8 0.0013 4.3E-08 38.4 3.3 21 11-31 37-57 (275)
260 2eyu_A Twitching motility prot 96.8 0.00099 3.4E-08 38.4 2.8 21 10-30 27-47 (261)
261 1ixz_A ATP-dependent metallopr 96.8 0.001 3.5E-08 37.4 2.8 20 11-30 52-71 (254)
262 2plr_A DTMP kinase, probable t 96.8 0.0014 4.9E-08 35.4 3.4 22 9-30 5-26 (213)
263 2d2e_A SUFC protein; ABC-ATPas 96.8 0.0011 3.7E-08 37.9 2.9 22 10-31 31-52 (250)
264 1sgw_A Putative ABC transporte 96.8 0.0014 4.7E-08 36.9 3.3 22 10-31 37-58 (214)
265 1via_A Shikimate kinase; struc 96.8 0.0011 3.9E-08 35.3 2.9 21 10-30 6-26 (175)
266 1ji0_A ABC transporter; ATP bi 96.8 0.0013 4.5E-08 37.3 3.3 22 10-31 34-55 (240)
267 2rcn_A Probable GTPase ENGC; Y 96.8 0.0011 3.7E-08 40.2 3.0 24 10-33 217-240 (358)
268 2zu0_C Probable ATP-dependent 96.8 0.0011 3.9E-08 38.2 3.0 22 10-31 48-69 (267)
269 2ixe_A Antigen peptide transpo 96.7 0.0014 4.6E-08 38.0 3.3 23 10-32 47-69 (271)
270 1np6_A Molybdopterin-guanine d 96.7 0.0012 3.9E-08 36.2 2.8 22 9-30 7-28 (174)
271 2olj_A Amino acid ABC transpor 96.7 0.0014 4.8E-08 37.9 3.3 22 10-31 52-73 (263)
272 1jjv_A Dephospho-COA kinase; P 96.7 0.0016 5.4E-08 35.5 3.3 22 9-30 3-24 (206)
273 1vpl_A ABC transporter, ATP-bi 96.7 0.0015 5E-08 37.6 3.3 22 10-31 43-64 (256)
274 3tr5_A RF-3, peptide chain rel 96.7 0.0006 2.1E-08 42.9 1.8 24 6-29 11-34 (528)
275 2ihy_A ABC transporter, ATP-bi 96.7 0.0016 5.6E-08 37.9 3.5 23 10-32 49-71 (279)
276 1tev_A UMP-CMP kinase; ploop, 96.7 0.0017 5.7E-08 34.7 3.4 22 9-30 4-25 (196)
277 2ghi_A Transport protein; mult 96.7 0.0013 4.4E-08 37.8 3.0 22 10-31 48-69 (260)
278 2pjz_A Hypothetical protein ST 96.7 0.0016 5.4E-08 37.7 3.4 23 10-32 32-54 (263)
279 2qi9_C Vitamin B12 import ATP- 96.7 0.0012 4.1E-08 37.9 2.9 22 10-31 28-49 (249)
280 2w58_A DNAI, primosome compone 96.7 0.0012 4.2E-08 35.8 2.8 22 9-30 55-76 (202)
281 3b85_A Phosphate starvation-in 96.7 0.001 3.5E-08 37.2 2.5 22 10-31 24-45 (208)
282 2yv5_A YJEQ protein; hydrolase 96.7 0.0017 5.8E-08 38.0 3.5 20 10-29 167-186 (302)
283 3iij_A Coilin-interacting nucl 96.7 0.0014 4.7E-08 35.1 2.9 21 9-29 12-32 (180)
284 2xb4_A Adenylate kinase; ATP-b 96.7 0.0015 5.1E-08 36.4 3.1 22 9-30 1-22 (223)
285 1aky_A Adenylate kinase; ATP:A 96.7 0.0015 5.3E-08 36.0 3.1 23 8-30 4-26 (220)
286 1tq4_A IIGP1, interferon-induc 96.7 0.002 6.7E-08 39.6 3.8 24 9-32 70-93 (413)
287 3ohm_A Guanine nucleotide-bind 96.7 0.0018 6.2E-08 38.7 3.6 25 5-29 4-28 (327)
288 2cvh_A DNA repair and recombin 96.7 0.0014 4.8E-08 35.7 2.9 21 10-30 22-42 (220)
289 2kjq_A DNAA-related protein; s 96.7 0.0011 3.6E-08 35.3 2.3 21 10-30 38-58 (149)
290 2nq2_C Hypothetical ABC transp 96.7 0.0017 5.8E-08 37.3 3.3 22 10-31 33-54 (253)
291 1zd8_A GTP:AMP phosphotransfer 96.7 0.0014 4.8E-08 36.4 2.9 23 8-30 7-29 (227)
292 3p32_A Probable GTPase RV1496/ 96.7 0.0017 5.9E-08 38.6 3.4 24 7-30 78-101 (355)
293 4fid_A G protein alpha subunit 96.7 0.0015 5.1E-08 39.3 3.1 24 6-29 3-26 (340)
294 2yz2_A Putative ABC transporte 96.6 0.0018 6E-08 37.4 3.3 22 10-31 35-56 (266)
295 3aez_A Pantothenate kinase; tr 96.6 0.0014 4.6E-08 38.8 2.8 24 7-30 89-112 (312)
296 2qt1_A Nicotinamide riboside k 96.6 0.0021 7.1E-08 35.1 3.4 24 8-31 21-44 (207)
297 1n0w_A DNA repair protein RAD5 96.6 0.0016 5.4E-08 36.0 3.0 22 10-31 26-47 (243)
298 1lv7_A FTSH; alpha/beta domain 96.6 0.0014 4.9E-08 36.8 2.8 22 9-30 46-67 (257)
299 1in4_A RUVB, holliday junction 96.6 0.0014 4.7E-08 38.6 2.8 21 10-30 53-73 (334)
300 2z0h_A DTMP kinase, thymidylat 96.6 0.0018 6.2E-08 34.8 3.1 21 10-30 2-22 (197)
301 2v54_A DTMP kinase, thymidylat 96.6 0.0019 6.5E-08 34.9 3.1 23 9-31 5-27 (204)
302 2ze6_A Isopentenyl transferase 96.6 0.0016 5.6E-08 37.1 3.0 20 10-29 3-22 (253)
303 2xtz_A Guanine nucleotide-bind 96.6 0.002 7E-08 38.7 3.5 24 6-29 7-30 (354)
304 2v9p_A Replication protein E1; 96.6 0.0016 5.4E-08 38.6 2.9 20 10-29 128-147 (305)
305 1iy2_A ATP-dependent metallopr 96.6 0.0015 5.3E-08 37.3 2.8 20 11-30 76-95 (278)
306 2qen_A Walker-type ATPase; unk 96.6 0.0016 5.6E-08 37.5 3.0 22 10-31 33-54 (350)
307 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0017 5.8E-08 39.3 3.1 23 11-33 33-55 (359)
308 2pbr_A DTMP kinase, thymidylat 96.6 0.002 6.8E-08 34.4 3.1 21 10-30 2-22 (195)
309 1zak_A Adenylate kinase; ATP:A 96.6 0.0014 4.8E-08 36.2 2.5 22 9-30 6-27 (222)
310 3n70_A Transport activator; si 96.6 0.0018 6.2E-08 33.8 2.8 24 8-31 24-47 (145)
311 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0017 5.9E-08 36.3 2.9 22 9-30 40-61 (262)
312 1z47_A CYSA, putative ABC-tran 96.6 0.0021 7.2E-08 38.8 3.4 22 11-32 44-65 (355)
313 1bif_A 6-phosphofructo-2-kinas 96.6 0.002 6.9E-08 39.6 3.4 25 7-31 38-62 (469)
314 2qby_A CDC6 homolog 1, cell di 96.6 0.0014 4.9E-08 38.1 2.6 22 9-30 46-67 (386)
315 1cip_A Protein (guanine nucleo 96.6 0.0024 8.1E-08 38.4 3.5 24 6-29 30-53 (353)
316 3be4_A Adenylate kinase; malar 96.5 0.0021 7.1E-08 35.6 3.0 23 8-30 5-27 (217)
317 1ak2_A Adenylate kinase isoenz 96.5 0.0023 7.9E-08 35.7 3.2 23 8-30 16-38 (233)
318 3h4m_A Proteasome-activating n 96.5 0.0017 6E-08 36.8 2.8 22 9-30 52-73 (285)
319 2fna_A Conserved hypothetical 96.5 0.0015 5.1E-08 37.7 2.5 21 10-30 32-52 (357)
320 1rj9_A FTSY, signal recognitio 96.5 0.0017 5.9E-08 38.2 2.8 22 9-30 103-124 (304)
321 2x8a_A Nuclear valosin-contain 96.5 0.0018 6.2E-08 37.4 2.8 20 11-30 47-66 (274)
322 1zo1_I IF2, translation initia 96.5 0.0009 3.1E-08 42.0 1.6 28 8-35 4-31 (501)
323 1l8q_A Chromosomal replication 96.5 0.0017 5.9E-08 37.7 2.7 21 10-30 39-59 (324)
324 1cr0_A DNA primase/helicase; R 96.5 0.0017 5.6E-08 37.4 2.6 22 10-31 37-58 (296)
325 2it1_A 362AA long hypothetical 96.5 0.0024 8.3E-08 38.6 3.4 22 11-32 32-53 (362)
326 1ukz_A Uridylate kinase; trans 96.5 0.0027 9.4E-08 34.4 3.4 22 8-29 15-36 (203)
327 2yyz_A Sugar ABC transporter, 96.5 0.0024 8.1E-08 38.6 3.4 22 11-32 32-53 (359)
328 1g29_1 MALK, maltose transport 96.5 0.0024 8.3E-08 38.7 3.4 22 11-32 32-53 (372)
329 3rlf_A Maltose/maltodextrin im 96.5 0.0025 8.5E-08 38.9 3.4 22 11-32 32-53 (381)
330 1v43_A Sugar-binding transport 96.5 0.0026 8.7E-08 38.6 3.4 22 11-32 40-61 (372)
331 3b9p_A CG5977-PA, isoform A; A 96.5 0.0019 6.4E-08 37.0 2.7 22 9-30 55-76 (297)
332 1odf_A YGR205W, hypothetical 3 96.5 0.0027 9.2E-08 37.2 3.4 23 7-29 30-52 (290)
333 2dy1_A Elongation factor G; tr 96.5 0.0026 9E-08 40.9 3.6 26 6-31 7-32 (665)
334 2bwj_A Adenylate kinase 5; pho 96.5 0.0022 7.4E-08 34.5 2.9 22 9-30 13-34 (199)
335 1ofh_A ATP-dependent HSL prote 96.5 0.002 6.9E-08 36.7 2.8 22 9-30 51-72 (310)
336 2c95_A Adenylate kinase 1; tra 96.5 0.0022 7.5E-08 34.4 2.9 22 9-30 10-31 (196)
337 1e6c_A Shikimate kinase; phosp 96.5 0.0024 8.3E-08 33.7 3.0 22 9-30 3-24 (173)
338 2h5e_A Peptide chain release f 96.5 0.0023 7.7E-08 40.3 3.2 25 6-30 11-35 (529)
339 2jeo_A Uridine-cytidine kinase 96.5 0.0021 7E-08 36.2 2.8 22 9-30 26-47 (245)
340 2qm8_A GTPase/ATPase; G protei 96.5 0.002 6.8E-08 38.3 2.8 22 8-29 55-76 (337)
341 2yvu_A Probable adenylyl-sulfa 96.5 0.0038 1.3E-07 33.5 3.7 23 8-30 13-35 (186)
342 3umf_A Adenylate kinase; rossm 96.5 0.0027 9.3E-08 35.9 3.2 23 8-30 28-51 (217)
343 1fnn_A CDC6P, cell division co 96.5 0.0021 7.3E-08 37.6 2.8 22 10-31 46-67 (389)
344 2dr3_A UPF0273 protein PH0284; 96.5 0.0021 7.1E-08 35.5 2.7 21 10-30 25-45 (247)
345 3b9q_A Chloroplast SRP recepto 96.5 0.0022 7.4E-08 37.7 2.8 21 10-30 102-122 (302)
346 3tui_C Methionine import ATP-b 96.4 0.0029 1E-07 38.4 3.4 22 11-32 57-78 (366)
347 2gza_A Type IV secretion syste 96.4 0.0025 8.6E-08 38.2 3.1 22 10-31 177-198 (361)
348 3e70_C DPA, signal recognition 96.4 0.0022 7.6E-08 38.2 2.8 22 9-30 130-151 (328)
349 2bbs_A Cystic fibrosis transme 96.4 0.0022 7.4E-08 37.6 2.7 22 10-31 66-87 (290)
350 2f1r_A Molybdopterin-guanine d 96.4 0.00085 2.9E-08 36.6 1.0 21 10-30 4-24 (171)
351 1nn5_A Similar to deoxythymidy 96.4 0.0025 8.5E-08 34.6 2.8 22 9-30 10-31 (215)
352 2iyv_A Shikimate kinase, SK; t 96.4 0.0027 9.3E-08 33.9 2.9 22 9-30 3-24 (184)
353 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0033 1.1E-07 35.8 3.4 22 9-30 5-26 (260)
354 3syl_A Protein CBBX; photosynt 96.4 0.0028 9.7E-08 36.3 3.1 22 8-29 67-88 (309)
355 1d2n_A N-ethylmaleimide-sensit 96.4 0.0024 8.3E-08 36.2 2.8 23 8-30 64-86 (272)
356 1yrb_A ATP(GTP)binding protein 96.4 0.0042 1.5E-07 34.8 3.8 23 7-29 13-35 (262)
357 3kta_A Chromosome segregation 96.4 0.0025 8.5E-08 34.0 2.7 19 11-29 29-47 (182)
358 4fcw_A Chaperone protein CLPB; 96.4 0.0042 1.5E-07 35.5 3.8 22 9-30 48-69 (311)
359 4e22_A Cytidylate kinase; P-lo 96.4 0.0031 1.1E-07 35.8 3.2 21 9-29 28-48 (252)
360 1rz3_A Hypothetical protein rb 96.4 0.0023 7.9E-08 35.0 2.6 23 8-30 22-44 (201)
361 2p5t_B PEZT; postsegregational 96.4 0.0022 7.6E-08 36.3 2.5 23 8-30 32-54 (253)
362 2vli_A Antibiotic resistance p 96.4 0.0021 7.2E-08 34.2 2.3 21 9-29 6-26 (183)
363 2vp4_A Deoxynucleoside kinase; 96.4 0.0023 7.8E-08 35.8 2.5 24 8-31 20-43 (230)
364 3nh6_A ATP-binding cassette SU 96.4 0.0021 7.1E-08 38.0 2.4 22 10-31 82-103 (306)
365 2v1u_A Cell division control p 96.4 0.002 6.9E-08 37.5 2.4 22 9-30 45-66 (387)
366 1vht_A Dephospho-COA kinase; s 96.4 0.0038 1.3E-07 34.3 3.4 22 9-30 5-26 (218)
367 3jvv_A Twitching mobility prot 96.4 0.0025 8.6E-08 38.3 2.8 21 10-30 125-145 (356)
368 1xjc_A MOBB protein homolog; s 96.3 0.0032 1.1E-07 34.5 3.0 22 9-30 5-26 (169)
369 3d31_A Sulfate/molybdate ABC t 96.3 0.0021 7.3E-08 38.6 2.4 22 11-32 29-50 (348)
370 1gtv_A TMK, thymidylate kinase 96.3 0.00079 2.7E-08 36.7 0.5 21 10-30 2-22 (214)
371 3szr_A Interferon-induced GTP- 96.3 0.0019 6.4E-08 41.1 2.2 25 10-34 47-71 (608)
372 1r5b_A Eukaryotic peptide chai 96.3 0.0023 7.9E-08 39.5 2.5 25 6-30 41-65 (467)
373 3tqc_A Pantothenate kinase; bi 96.3 0.004 1.4E-07 37.1 3.5 23 8-30 92-114 (321)
374 1sxj_E Activator 1 40 kDa subu 96.3 0.0024 8.1E-08 37.3 2.5 20 11-30 39-58 (354)
375 3uk6_A RUVB-like 2; hexameric 96.3 0.0025 8.4E-08 37.4 2.5 21 10-30 72-92 (368)
376 1f5n_A Interferon-induced guan 96.3 0.0058 2E-07 39.2 4.3 26 7-32 37-62 (592)
377 1t9h_A YLOQ, probable GTPase E 96.3 0.00061 2.1E-08 40.4 -0.1 22 10-31 175-196 (307)
378 2ewv_A Twitching motility prot 96.3 0.0028 9.6E-08 38.2 2.7 21 10-30 138-158 (372)
379 3co5_A Putative two-component 96.3 0.002 6.8E-08 33.6 1.9 23 9-31 28-50 (143)
380 1azs_C GS-alpha; complex (lyas 96.3 0.0038 1.3E-07 38.3 3.3 24 6-29 38-61 (402)
381 3pfi_A Holliday junction ATP-d 96.3 0.0031 1.1E-07 36.7 2.8 22 9-30 56-77 (338)
382 1ltq_A Polynucleotide kinase; 96.3 0.0034 1.2E-07 36.0 3.0 22 9-30 3-24 (301)
383 1sq5_A Pantothenate kinase; P- 96.3 0.0027 9.3E-08 37.1 2.6 22 9-30 81-102 (308)
384 3t15_A Ribulose bisphosphate c 96.3 0.0027 9.4E-08 36.8 2.5 22 9-30 37-58 (293)
385 3pxg_A Negative regulator of g 96.3 0.0033 1.1E-07 38.7 3.0 22 9-30 202-223 (468)
386 2pez_A Bifunctional 3'-phospho 96.3 0.0045 1.5E-07 33.0 3.2 22 9-30 6-27 (179)
387 1nlf_A Regulatory protein REPA 96.3 0.0029 1E-07 36.2 2.6 21 10-30 32-52 (279)
388 2xex_A Elongation factor G; GT 96.3 0.0032 1.1E-07 40.7 3.0 25 6-30 8-32 (693)
389 3gd7_A Fusion complex of cysti 96.2 0.0029 1E-07 38.6 2.6 21 10-30 49-69 (390)
390 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0035 1.2E-07 37.2 2.9 23 10-32 173-195 (330)
391 1uj2_A Uridine-cytidine kinase 96.2 0.0047 1.6E-07 34.9 3.3 23 8-30 22-44 (252)
392 3cf0_A Transitional endoplasmi 96.2 0.0033 1.1E-07 36.5 2.7 22 9-30 50-71 (301)
393 2qby_B CDC6 homolog 3, cell di 96.2 0.003 1E-07 37.0 2.6 21 10-30 47-67 (384)
394 1m7g_A Adenylylsulfate kinase; 96.2 0.0037 1.3E-07 34.4 2.8 21 9-29 26-46 (211)
395 1sxj_D Activator 1 41 kDa subu 96.2 0.0035 1.2E-07 36.4 2.8 20 11-30 61-80 (353)
396 2bjv_A PSP operon transcriptio 96.2 0.0038 1.3E-07 35.3 2.8 23 9-31 30-52 (265)
397 2og2_A Putative signal recogni 96.2 0.0036 1.2E-07 37.8 2.8 21 10-30 159-179 (359)
398 1sxj_C Activator 1 40 kDa subu 96.2 0.0035 1.2E-07 36.7 2.7 20 11-30 49-68 (340)
399 2zts_A Putative uncharacterize 96.1 0.0046 1.6E-07 34.2 3.0 21 10-30 32-52 (251)
400 1udx_A The GTP-binding protein 96.1 0.002 7E-08 39.5 1.6 23 10-32 159-181 (416)
401 1oxx_K GLCV, glucose, ABC tran 96.1 0.0021 7.1E-08 38.7 1.6 22 11-32 34-55 (353)
402 1zuh_A Shikimate kinase; alpha 96.1 0.0057 2E-07 32.3 3.2 22 9-30 8-29 (168)
403 1um8_A ATP-dependent CLP prote 96.1 0.0045 1.5E-07 36.7 3.0 23 8-30 72-94 (376)
404 2yhs_A FTSY, cell division pro 96.1 0.004 1.4E-07 39.3 2.8 21 10-30 295-315 (503)
405 3nwj_A ATSK2; P loop, shikimat 96.1 0.0041 1.4E-07 35.7 2.7 22 9-30 49-70 (250)
406 3r20_A Cytidylate kinase; stru 96.1 0.0054 1.8E-07 35.1 3.1 22 8-29 9-30 (233)
407 1nij_A Hypothetical protein YJ 96.1 0.0031 1.1E-07 37.1 2.2 22 10-31 6-27 (318)
408 2r8r_A Sensor protein; KDPD, P 96.1 0.0066 2.3E-07 34.8 3.5 23 7-29 5-27 (228)
409 1hqc_A RUVB; extended AAA-ATPa 96.1 0.0029 1E-07 36.4 2.0 22 9-30 39-60 (324)
410 1q3t_A Cytidylate kinase; nucl 96.1 0.0057 1.9E-07 34.2 3.2 26 5-30 13-38 (236)
411 3foz_A TRNA delta(2)-isopenten 96.1 0.0066 2.3E-07 36.4 3.5 22 9-30 11-32 (316)
412 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0044 1.5E-07 36.4 2.7 22 9-30 46-67 (322)
413 1p9r_A General secretion pathw 96.1 0.0044 1.5E-07 38.1 2.8 21 10-30 169-189 (418)
414 3zvl_A Bifunctional polynucleo 96.1 0.0048 1.7E-07 37.5 3.0 22 9-30 259-280 (416)
415 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0036 1.2E-07 38.8 2.4 22 10-31 140-161 (460)
416 3eie_A Vacuolar protein sortin 96.0 0.0045 1.5E-07 36.1 2.7 22 9-30 52-73 (322)
417 2obl_A ESCN; ATPase, hydrolase 96.0 0.0045 1.5E-07 37.1 2.8 23 10-32 73-95 (347)
418 4eaq_A DTMP kinase, thymidylat 96.0 0.0063 2.2E-07 34.2 3.2 23 8-30 26-48 (229)
419 2qmh_A HPR kinase/phosphorylas 96.0 0.0059 2E-07 34.6 3.0 23 9-31 35-57 (205)
420 3ec1_A YQEH GTPase; atnos1, at 96.0 0.0047 1.6E-07 37.1 2.8 23 9-31 163-185 (369)
421 2qgz_A Helicase loader, putati 96.0 0.0058 2E-07 35.8 3.1 23 8-30 152-174 (308)
422 3b5x_A Lipid A export ATP-bind 96.0 0.0072 2.5E-07 38.1 3.7 23 10-32 371-393 (582)
423 1n0u_A EF-2, elongation factor 96.0 0.0043 1.5E-07 40.9 2.8 26 6-31 17-42 (842)
424 1yqt_A RNAse L inhibitor; ATP- 96.0 0.008 2.7E-07 37.8 3.8 23 10-32 49-71 (538)
425 3b60_A Lipid A export ATP-bind 96.0 0.006 2.1E-07 38.5 3.2 22 10-31 371-392 (582)
426 2oap_1 GSPE-2, type II secreti 96.0 0.0053 1.8E-07 38.5 2.9 22 10-31 262-283 (511)
427 2f6r_A COA synthase, bifunctio 96.0 0.0063 2.2E-07 35.2 3.1 22 8-29 75-96 (281)
428 3crm_A TRNA delta(2)-isopenten 95.9 0.0078 2.7E-07 36.0 3.5 22 9-30 6-27 (323)
429 2elf_A Protein translation elo 95.9 0.0038 1.3E-07 37.6 2.1 20 10-29 23-42 (370)
430 3d8b_A Fidgetin-like protein 1 95.9 0.006 2.1E-07 36.2 2.9 23 8-30 117-139 (357)
431 2rdo_7 EF-G, elongation factor 95.9 0.0069 2.4E-07 39.2 3.4 26 5-30 7-32 (704)
432 1jr3_A DNA polymerase III subu 95.9 0.0059 2E-07 35.6 2.9 21 10-30 40-60 (373)
433 2r62_A Cell division protease 95.9 0.0019 6.5E-08 36.4 0.7 21 10-30 46-66 (268)
434 4a9a_A Ribosome-interacting GT 95.9 0.015 5E-07 35.4 4.6 25 8-32 72-96 (376)
435 3a8t_A Adenylate isopentenyltr 95.9 0.0068 2.3E-07 36.6 3.1 21 10-30 42-62 (339)
436 2z4s_A Chromosomal replication 95.9 0.0055 1.9E-07 37.5 2.7 21 10-30 132-152 (440)
437 1g8p_A Magnesium-chelatase 38 95.9 0.0032 1.1E-07 36.5 1.6 21 10-30 47-67 (350)
438 1iqp_A RFCS; clamp loader, ext 95.9 0.0065 2.2E-07 34.8 2.9 22 10-31 48-69 (327)
439 2dpy_A FLII, flagellum-specifi 95.9 0.0057 2E-07 37.7 2.8 23 10-32 159-181 (438)
440 1z6t_A APAF-1, apoptotic prote 95.9 0.007 2.4E-07 37.6 3.2 22 10-31 149-170 (591)
441 3hws_A ATP-dependent CLP prote 95.9 0.0067 2.3E-07 35.9 3.0 23 8-30 51-73 (363)
442 2p67_A LAO/AO transport system 95.9 0.0071 2.4E-07 35.8 3.1 22 8-29 56-77 (341)
443 2ywe_A GTP-binding protein LEP 95.9 0.0083 2.8E-07 38.5 3.5 25 6-30 4-28 (600)
444 2r44_A Uncharacterized protein 95.9 0.0038 1.3E-07 36.3 1.8 21 10-30 48-68 (331)
445 3pvs_A Replication-associated 95.9 0.0061 2.1E-07 37.6 2.8 21 10-30 52-72 (447)
446 2yl4_A ATP-binding cassette SU 95.8 0.0069 2.3E-07 38.3 3.1 22 10-31 372-393 (595)
447 2qp9_X Vacuolar protein sortin 95.8 0.0063 2.2E-07 36.2 2.8 22 9-30 85-106 (355)
448 3exa_A TRNA delta(2)-isopenten 95.8 0.007 2.4E-07 36.3 3.0 21 10-30 5-25 (322)
449 1c9k_A COBU, adenosylcobinamid 95.8 0.0062 2.1E-07 33.7 2.6 21 11-31 2-22 (180)
450 3vfd_A Spastin; ATPase, microt 95.8 0.0066 2.3E-07 36.3 2.8 22 9-30 149-170 (389)
451 3zvr_A Dynamin-1; hydrolase, D 95.8 0.0079 2.7E-07 39.7 3.2 27 7-33 50-76 (772)
452 3d3q_A TRNA delta(2)-isopenten 95.8 0.0074 2.5E-07 36.3 2.9 22 9-30 8-29 (340)
453 2px0_A Flagellar biosynthesis 95.8 0.0066 2.2E-07 35.6 2.6 20 10-29 107-126 (296)
454 3h2y_A GTPase family protein; 95.8 0.0052 1.8E-07 36.9 2.2 23 9-31 161-183 (368)
455 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0079 2.7E-07 31.8 2.7 19 11-29 26-44 (149)
456 3qf4_B Uncharacterized ABC tra 95.8 0.0083 2.8E-07 38.0 3.2 22 10-31 383-404 (598)
457 3j16_B RLI1P; ribosome recycli 95.8 0.01 3.6E-07 38.0 3.6 23 10-32 105-127 (608)
458 1w5s_A Origin recognition comp 95.7 0.0051 1.7E-07 36.3 2.1 21 10-30 52-74 (412)
459 2chq_A Replication factor C sm 95.7 0.0076 2.6E-07 34.4 2.8 21 10-30 40-60 (319)
460 1sxj_B Activator 1 37 kDa subu 95.7 0.0077 2.6E-07 34.4 2.8 20 11-30 45-64 (323)
461 1tf7_A KAIC; homohexamer, hexa 95.7 0.0066 2.3E-07 37.8 2.6 19 10-28 41-59 (525)
462 1pzn_A RAD51, DNA repair and r 95.7 0.0069 2.4E-07 36.1 2.6 22 10-31 133-154 (349)
463 3m6a_A ATP-dependent protease 95.7 0.0072 2.5E-07 38.0 2.8 21 10-30 110-130 (543)
464 4a82_A Cystic fibrosis transme 95.7 0.0072 2.5E-07 38.1 2.8 22 10-31 369-390 (578)
465 3euj_A Chromosome partition pr 95.7 0.0077 2.6E-07 37.8 2.8 21 10-30 31-51 (483)
466 1svm_A Large T antigen; AAA+ f 95.7 0.008 2.7E-07 36.5 2.8 22 9-30 170-191 (377)
467 1vma_A Cell division protein F 95.7 0.0091 3.1E-07 35.2 3.0 21 10-30 106-126 (306)
468 3ozx_A RNAse L inhibitor; ATP 95.7 0.011 3.9E-07 37.2 3.5 22 11-32 28-49 (538)
469 3pxi_A Negative regulator of g 95.7 0.0084 2.9E-07 38.7 3.0 22 9-30 202-223 (758)
470 3ake_A Cytidylate kinase; CMP 95.6 0.01 3.5E-07 32.0 2.9 21 10-30 4-24 (208)
471 1sxj_A Activator 1 95 kDa subu 95.6 0.0084 2.9E-07 37.3 2.8 22 9-30 78-99 (516)
472 3bk7_A ABC transporter ATP-bin 95.6 0.013 4.6E-07 37.4 3.7 23 10-32 119-141 (607)
473 1p5z_B DCK, deoxycytidine kina 95.6 0.0092 3.1E-07 33.8 2.7 23 8-30 24-46 (263)
474 1r6b_X CLPA protein; AAA+, N-t 95.6 0.0096 3.3E-07 38.3 3.0 22 9-30 208-229 (758)
475 3bh0_A DNAB-like replicative h 95.6 0.01 3.5E-07 34.8 3.0 20 11-30 71-90 (315)
476 3tqf_A HPR(Ser) kinase; transf 95.6 0.0091 3.1E-07 33.3 2.6 22 10-31 18-39 (181)
477 3lda_A DNA repair protein RAD5 95.6 0.0083 2.9E-07 36.6 2.6 20 10-29 180-199 (400)
478 1ojl_A Transcriptional regulat 95.6 0.01 3.5E-07 34.7 2.9 22 9-30 26-47 (304)
479 2zan_A Vacuolar protein sortin 95.5 0.0095 3.2E-07 36.5 2.8 22 9-30 168-189 (444)
480 3avx_A Elongation factor TS, e 95.5 0.012 4.2E-07 40.7 3.4 26 6-31 294-319 (1289)
481 3qf4_A ABC transporter, ATP-bi 95.5 0.01 3.5E-07 37.5 2.9 22 10-31 371-392 (587)
482 3gmt_A Adenylate kinase; ssgci 95.5 0.013 4.5E-07 33.5 3.1 26 5-30 5-30 (230)
483 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.013 4.3E-07 36.8 3.2 22 9-30 42-63 (500)
484 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.012 4.2E-07 35.2 3.0 19 11-29 26-44 (365)
485 1a7j_A Phosphoribulokinase; tr 95.4 0.0063 2.1E-07 35.5 1.7 22 9-30 6-27 (290)
486 3cb4_D GTP-binding protein LEP 95.4 0.0065 2.2E-07 38.9 1.8 24 7-30 3-26 (599)
487 3ozx_A RNAse L inhibitor; ATP 95.4 0.016 5.6E-07 36.5 3.5 22 11-32 297-318 (538)
488 3k1j_A LON protease, ATP-depen 95.4 0.012 4E-07 37.3 2.8 22 10-31 62-83 (604)
489 3bk7_A ABC transporter ATP-bin 95.4 0.017 5.9E-07 36.9 3.6 23 10-32 384-406 (607)
490 2ce7_A Cell division protein F 95.4 0.012 4.1E-07 36.7 2.8 21 10-30 51-71 (476)
491 2r6a_A DNAB helicase, replicat 95.3 0.013 4.5E-07 35.9 3.0 22 10-31 205-226 (454)
492 1yqt_A RNAse L inhibitor; ATP- 95.3 0.021 7.2E-07 35.9 3.8 23 10-32 314-336 (538)
493 4b4t_K 26S protease regulatory 95.3 0.013 4.5E-07 36.2 2.9 22 9-30 207-228 (428)
494 2dhr_A FTSH; AAA+ protein, hex 95.3 0.012 4.2E-07 36.9 2.7 21 10-30 66-86 (499)
495 2grj_A Dephospho-COA kinase; T 95.3 0.021 7.3E-07 31.4 3.5 23 8-30 12-34 (192)
496 2a5y_B CED-4; apoptosis; HET: 95.3 0.014 4.8E-07 36.4 2.9 21 10-30 154-174 (549)
497 3eph_A TRNA isopentenyltransfe 95.2 0.013 4.3E-07 36.2 2.6 21 10-30 4-24 (409)
498 1ko7_A HPR kinase/phosphatase; 95.2 0.014 4.8E-07 34.8 2.6 22 10-31 146-167 (314)
499 3te6_A Regulatory protein SIR3 95.2 0.01 3.4E-07 35.4 2.0 22 9-30 46-67 (318)
500 1tf7_A KAIC; homohexamer, hexa 95.2 0.013 4.4E-07 36.5 2.6 22 10-31 283-304 (525)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.48 E-value=4e-14 Score=80.08 Aligned_cols=46 Identities=43% Similarity=0.740 Sum_probs=31.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
..+||++++|+++||||+|+.||..+.|.+.+.||+|.+|..+...
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~ 56 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 56 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEE
Confidence 4579999999999999999999999999999999999999877653
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.28 E-value=1.3e-11 Score=67.77 Aligned_cols=51 Identities=71% Similarity=1.169 Sum_probs=43.8
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
|+.+.+..+|++++|++++|||+|+.++..+.+...+.||++.++....+.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 51 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVE 51 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEE
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEE
Confidence 776678899999999999999999999999999999999999888765543
No 3
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.27 E-value=2.2e-11 Score=65.58 Aligned_cols=51 Identities=47% Similarity=0.798 Sum_probs=44.3
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
|+.+.+..+|++++|++++|||+|++++..+.+...+.+|++.++......
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 53 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN 53 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEE
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEE
Confidence 667777899999999999999999999999999988999999888766543
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.27 E-value=3e-12 Score=69.00 Aligned_cols=51 Identities=57% Similarity=1.052 Sum_probs=28.4
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
|+++.++.+|++++|++++|||+|+.++..+.+...+.||++.++....+.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 51 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIE 51 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEE
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEE
Confidence 777778899999999999999999999999999888899999888766543
No 5
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.27 E-value=2e-11 Score=65.25 Aligned_cols=51 Identities=63% Similarity=0.990 Sum_probs=39.9
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
|+.+.+..+|++++|++++|||+|++++..+.+...+.++++.++......
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 52 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE 52 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEE
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEE
Confidence 667778899999999999999999999999999988999999888766553
No 6
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.26 E-value=8.6e-12 Score=66.71 Aligned_cols=50 Identities=38% Similarity=0.757 Sum_probs=37.4
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
|+.+....++++++|++++|||+|+.++..+.+...+.||++.++....+
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~ 50 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEV 50 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEE
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEE
Confidence 77777789999999999999999999999999998899999988876654
No 7
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.25 E-value=2.5e-11 Score=66.44 Aligned_cols=51 Identities=31% Similarity=0.699 Sum_probs=41.0
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
|+.+....++++++|++++|||+|+.++..+.+...+.+|++.++....+.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 51 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM 51 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEE
Confidence 677778899999999999999999999999999989999999888766543
No 8
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=4.6e-11 Score=64.66 Aligned_cols=51 Identities=45% Similarity=0.685 Sum_probs=43.5
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
|+.+....+|++++|++++|||+|+.++..+.+...+.+|++.++....+.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~ 58 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS 58 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEE
Confidence 455566789999999999999999999999999988999999888766543
No 9
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.23 E-value=4.3e-11 Score=64.44 Aligned_cols=46 Identities=46% Similarity=0.964 Sum_probs=39.6
Q ss_pred CCC-ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 1 MSN-EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 1 m~~-~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
|+. +.+..+|++++|++++|||+|++++..+.+...+.+|++.++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 49 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR 49 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee
Confidence 443 4567899999999999999999999999998889999999887
No 10
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.20 E-value=8.5e-11 Score=63.71 Aligned_cols=50 Identities=76% Similarity=1.186 Sum_probs=43.0
Q ss_pred CCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 2 ~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+.+....+|++++|++++|||+|++++..+.+...+.++++.++......
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 59 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE 59 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEE
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEE
Confidence 34556789999999999999999999999999999999999888766553
No 11
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.19 E-value=3.9e-11 Score=66.58 Aligned_cols=46 Identities=30% Similarity=0.597 Sum_probs=37.6
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
|+......+|++++|++++|||+|++++..+.|...+.||++.++.
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~ 66 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 66 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE
Confidence 5566677899999999999999999999999999989999998774
No 12
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=6.4e-11 Score=64.61 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=40.9
Q ss_pred CCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 2 ~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
....+..+|++++|++++|||+|++++..+.+...+.||+|.++.....
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~ 65 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTV 65 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEE
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEE
Confidence 4455678999999999999999999999999988899999988876654
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.19 E-value=1.2e-10 Score=63.34 Aligned_cols=49 Identities=39% Similarity=0.796 Sum_probs=42.5
Q ss_pred CccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 3 ~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
++.+..+|++++|++++|||+|++++..+.+...+.+|+|.++..+...
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~ 68 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVM 68 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence 3456689999999999999999999999999988899999888766543
No 14
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.18 E-value=1.1e-10 Score=63.90 Aligned_cols=48 Identities=56% Similarity=0.825 Sum_probs=41.8
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+.+..++++++|++|+|||||++++....++..+.||++.++....+.
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~ 72 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ 72 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEE
Confidence 345679999999999999999999999999988999999888765543
No 15
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.17 E-value=9.7e-11 Score=64.72 Aligned_cols=49 Identities=45% Similarity=0.938 Sum_probs=42.9
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSIY 52 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~~ 52 (57)
+++..+|++++|++++|||+|++++..+.+...+.+|++.++..+.+.+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~ 69 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY 69 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEE
Confidence 4567899999999999999999999999998889999999987765543
No 16
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=1.1e-10 Score=64.67 Aligned_cols=48 Identities=44% Similarity=0.833 Sum_probs=42.2
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+++..+|++++|++++|||+|++++..+.+...+.+|++.++......
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~ 69 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE 69 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE
Confidence 345689999999999999999999999999988999999998766543
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.17 E-value=1.2e-10 Score=62.05 Aligned_cols=48 Identities=42% Similarity=0.806 Sum_probs=41.4
Q ss_pred CccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 3 ~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
.+....+|++++|++++|||+|++++..+.+...+.+|++.++.....
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~ 57 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRII 57 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEE
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEE
Confidence 345568999999999999999999999999998899999988766654
No 18
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.16 E-value=2e-10 Score=62.78 Aligned_cols=48 Identities=48% Similarity=0.978 Sum_probs=42.0
Q ss_pred CccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 3 ~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
...++.+|++++|++++|||+|+.++..+.+...+.+|+|.++.....
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~ 50 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI 50 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEE
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEE
Confidence 345678999999999999999999999999988899999988876554
No 19
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.16 E-value=1.1e-10 Score=61.69 Aligned_cols=46 Identities=30% Similarity=0.648 Sum_probs=40.5
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+..+|++++|++++|||+|++++..+.+...+.||++.++......
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 48 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQ 48 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEE
Confidence 4679999999999999999999999999989999999888766553
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.16 E-value=1.5e-10 Score=61.33 Aligned_cols=47 Identities=34% Similarity=0.715 Sum_probs=41.0
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
....+|++++|++++|||+|++++..+.+...+.||++.++......
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~ 49 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLN 49 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEE
Confidence 45689999999999999999999999999988999999888765543
No 21
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.15 E-value=1.6e-10 Score=61.71 Aligned_cols=47 Identities=36% Similarity=0.648 Sum_probs=37.6
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
....++++++|++++|||+|++++..+.+...+.||++.++......
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 50 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE 50 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEE
Confidence 45679999999999999999999999999988999999888665543
No 22
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.15 E-value=1.6e-10 Score=61.69 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=40.1
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
|.......++++++|++++|||+|++++..+.+...+.+|++.++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 47 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT 47 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE
Confidence 5555667899999999999999999999999999999999998875
No 23
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.13 E-value=2.8e-10 Score=61.73 Aligned_cols=46 Identities=54% Similarity=0.999 Sum_probs=40.7
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
.++.+|++++|++++|||+|++++..+.+...+.+|+|.++.....
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~ 64 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV 64 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEE
Confidence 4568999999999999999999999999988889999988876544
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.13 E-value=2.7e-10 Score=60.25 Aligned_cols=47 Identities=34% Similarity=0.540 Sum_probs=41.2
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
....+|++++|++++|||+|++++..+.+...+.|++|.++......
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 49 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ 49 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEE
Confidence 45679999999999999999999999999888999999888765543
No 25
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.13 E-value=1.8e-10 Score=62.16 Aligned_cols=46 Identities=35% Similarity=0.615 Sum_probs=41.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
...+|++++|++++|||+|+.++....+...+.+|++.++......
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 50 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVN 50 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEE
Confidence 4579999999999999999999999999999999999988776554
No 26
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=64.15 Aligned_cols=47 Identities=49% Similarity=0.879 Sum_probs=32.2
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
.+..+|++++|++++|||+|+.++..+.|...+.+|++.++....+.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 72 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLE 72 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEE
Confidence 45679999999999999999999999999888999999888766554
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.13 E-value=2.9e-10 Score=60.05 Aligned_cols=46 Identities=41% Similarity=0.639 Sum_probs=40.7
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
....+|++++|++++|||+|+.++..+.+...+.++++.++.....
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~ 48 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTV 48 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEE
Confidence 4568999999999999999999999999998889999988866554
No 28
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.13 E-value=2.3e-10 Score=62.32 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=37.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
...+|++++|++++|||+|+.++..+.|...+.||++.++..
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~ 60 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSS 60 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeE
Confidence 457999999999999999999999999999999999988744
No 29
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.12 E-value=5.2e-11 Score=63.67 Aligned_cols=47 Identities=30% Similarity=0.504 Sum_probs=41.0
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
....+|++++|++++|||+|+.++..+.+...+.||+|.++......
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~ 49 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRIT 49 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEE
Confidence 34679999999999999999999999999888889999888766554
No 30
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=3.8e-11 Score=65.39 Aligned_cols=50 Identities=46% Similarity=0.959 Sum_probs=43.3
Q ss_pred CCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 2 ~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+.+.++.+|++++|++++|||+|++++..+.+...+.+|++.++......
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 66 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVY 66 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEE
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEE
Confidence 34567789999999999999999999999999888999999888766553
No 31
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.12 E-value=2.1e-10 Score=62.41 Aligned_cols=48 Identities=46% Similarity=0.730 Sum_probs=37.2
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+....+|++++|++++|||+|+.++..+.+...+.+|++.++......
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 64 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVN 64 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEE
Confidence 345689999999999999999999999999888889999888765543
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.11 E-value=3.6e-10 Score=59.68 Aligned_cols=45 Identities=33% Similarity=0.649 Sum_probs=39.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
..+|++++|++++|||+|+.++..+.+...+.|+++.++......
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~ 46 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT 46 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence 368999999999999999999999999988999999888665543
No 33
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.11 E-value=3.5e-10 Score=60.82 Aligned_cols=44 Identities=36% Similarity=0.616 Sum_probs=38.8
Q ss_pred CccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 3 ~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
......+|++++|++++|||+|++++..+.+...+.+|++.++.
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~ 56 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL 56 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeE
Confidence 33456899999999999999999999999999999999998773
No 34
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.11 E-value=3.4e-10 Score=60.29 Aligned_cols=46 Identities=43% Similarity=0.740 Sum_probs=40.6
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
...+|++++|++++|||+|++++..+.+...+.++++.++......
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~ 57 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 57 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEE
Confidence 4569999999999999999999999999988999999888766543
No 35
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.10 E-value=2.2e-10 Score=62.55 Aligned_cols=48 Identities=35% Similarity=0.675 Sum_probs=34.7
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
.....+|++++|++++|||+|++++..+.+...+.+|++.++....+.
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~ 69 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVE 69 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEE
Confidence 345689999999999999999999999999888899999888766554
No 36
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.09 E-value=3.4e-10 Score=61.42 Aligned_cols=46 Identities=43% Similarity=0.746 Sum_probs=40.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
...+|++++|++++|||+|++++..+.+...+.+|++.++....+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 63 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD 63 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEE
Confidence 4579999999999999999999999999988999999888766543
No 37
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.09 E-value=2.5e-10 Score=61.18 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=35.6
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...+|++++|++++|||+|+.++..+.|.. +.||++..+.
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~ 44 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK 44 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEE
Confidence 467999999999999999999999999986 7899986663
No 38
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.09 E-value=3.9e-10 Score=61.84 Aligned_cols=46 Identities=54% Similarity=0.779 Sum_probs=37.5
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
++.++++++|++|+|||||++++.+..+...+.||+|.++....+.
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~ 48 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ 48 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE
Confidence 4579999999999999999999999999888899999887665543
No 39
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.09 E-value=4.2e-10 Score=60.22 Aligned_cols=47 Identities=43% Similarity=0.593 Sum_probs=40.6
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
....+|++++|++++|||+|+.++..+.+...+.+|++.++......
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 55 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLA 55 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEE
Confidence 45679999999999999999999999999988889999888765543
No 40
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.08 E-value=2.8e-10 Score=61.59 Aligned_cols=42 Identities=31% Similarity=0.615 Sum_probs=37.3
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
....+|++++|++++|||+|++++..+.|...+.||++.++.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~ 45 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT 45 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE
Confidence 456899999999999999999999999999889999998774
No 41
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.08 E-value=2.3e-10 Score=62.87 Aligned_cols=47 Identities=43% Similarity=0.729 Sum_probs=30.3
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
.+..+|++++|++++|||+|++++..+.+...+.+|++.++......
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~ 68 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN 68 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEE
Confidence 45689999999999999999999999999888999999888766543
No 42
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.08 E-value=3.8e-10 Score=62.78 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=37.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...+|++++|++++|||+|+.++..+.|...+.||++.++.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~ 65 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT 65 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE
Confidence 45799999999999999999999999999999999998875
No 43
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.07 E-value=6.3e-10 Score=60.54 Aligned_cols=44 Identities=32% Similarity=0.647 Sum_probs=39.0
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
....+|++++|++++|||+|++++..+.+...+.||++.++...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~ 63 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV 63 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEE
Confidence 34579999999999999999999999999999999999887653
No 44
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.06 E-value=3.1e-10 Score=60.03 Aligned_cols=45 Identities=53% Similarity=0.921 Sum_probs=33.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
..+|++++|++++|||+|++++..+.+...+.||++.++......
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~ 46 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD 46 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEE
Confidence 468999999999999999999999999888999999888766543
No 45
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.06 E-value=3e-10 Score=62.18 Aligned_cols=45 Identities=33% Similarity=0.654 Sum_probs=29.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
...+|++++|++++|||+|+.++..+.+...+.+|+|.++.....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~ 70 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTL 70 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEE
Confidence 457999999999999999999999999988889999988766554
No 46
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.06 E-value=4.9e-10 Score=62.43 Aligned_cols=46 Identities=50% Similarity=0.732 Sum_probs=35.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+..+|++++|++++|||+|+.++..+.+...+.||++.++....+.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~ 56 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLE 56 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEE
Confidence 4579999999999999999999999999988899999988776543
No 47
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.04 E-value=3e-10 Score=61.66 Aligned_cols=42 Identities=26% Similarity=0.490 Sum_probs=28.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC--cCCCcccCCeeeeEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD--SYVDSYISTIGVDFVSLS 49 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~--~~~~~~~~tig~~~~~~~ 49 (57)
.+|++++|++|+|||||++++... .+...+.||+|.++....
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~ 45 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWP 45 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEee
Confidence 479999999999999999999984 677778899999887654
No 48
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.03 E-value=1.4e-09 Score=58.12 Aligned_cols=46 Identities=50% Similarity=0.998 Sum_probs=39.4
Q ss_pred ccceeeeEEEECCCCCchHHHHHHhhcCcCC-CcccCCeeeeEEEEE
Q 035406 4 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFVSLS 49 (57)
Q Consensus 4 ~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~-~~~~~tig~~~~~~~ 49 (57)
.++..+|++++|++++|||+|+.++..+.+. ..+.||++.++....
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~ 52 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKV 52 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEE
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEE
Confidence 3466899999999999999999999999885 567899998887654
No 49
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.03 E-value=6.3e-10 Score=61.24 Aligned_cols=41 Identities=29% Similarity=0.677 Sum_probs=37.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...+|++++|++++|||+|+.++..+.|...+.||++.++.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~ 47 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS 47 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE
Confidence 46799999999999999999999999999899999997764
No 50
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.02 E-value=7.1e-10 Score=60.24 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=37.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
...+|++++|++++|||+|++++..+.+...+.||++.++..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 61 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK 61 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE
Confidence 357999999999999999999999999988889999988754
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.01 E-value=1e-09 Score=60.13 Aligned_cols=46 Identities=54% Similarity=0.935 Sum_probs=39.6
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
...++++++|++++|||+|+.++....+...+.+|++.++....+.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 63 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVD 63 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEE
Confidence 4579999999999999999999999999888999999888766543
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.00 E-value=1.1e-09 Score=57.67 Aligned_cols=39 Identities=33% Similarity=0.634 Sum_probs=36.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
.+|++++|++++|||+|++++..+.+...+.||++.++.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 41 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR 41 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE
Confidence 589999999999999999999999999899999997765
No 53
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=1.1e-09 Score=59.43 Aligned_cols=41 Identities=32% Similarity=0.801 Sum_probs=37.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...+|++++|++++|||+|+.++..+.|...+.||++.++.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 56 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA 56 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence 46799999999999999999999999999999999987764
No 54
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.00 E-value=1.6e-09 Score=58.05 Aligned_cols=40 Identities=40% Similarity=0.602 Sum_probs=37.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...+|++++|++++|||+|+.++..+.+...+.||.+.++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 43 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF 43 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE
Confidence 3579999999999999999999999999999999999877
No 55
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.99 E-value=9.4e-11 Score=64.24 Aligned_cols=50 Identities=76% Similarity=1.186 Sum_probs=42.5
Q ss_pred CCccceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 2 SNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 2 ~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
+...+..+|++++|++++|||+|++++..+.+...+.++++.++....+.
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 76 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE 76 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEE
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEE
Confidence 44456789999999999999999999999999988889999888766553
No 56
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.99 E-value=7.8e-10 Score=60.01 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=33.5
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCC-cccCCeeeeEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVD-SYISTIGVDFV 46 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~-~~~~tig~~~~ 46 (57)
....+|++++|++++|||+|+.++..+.+.. .+.||+|....
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~ 56 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE 56 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE
Confidence 4568999999999999999999999999988 88999995544
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.99 E-value=1.9e-09 Score=57.66 Aligned_cols=43 Identities=33% Similarity=0.534 Sum_probs=37.2
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
....+|++++|++++|||+|++++..+.+...+.+|.+.++..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 57 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK 57 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEE
Confidence 3457999999999999999999999999998899999877744
No 58
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.98 E-value=2.2e-09 Score=57.47 Aligned_cols=41 Identities=29% Similarity=0.683 Sum_probs=36.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...+|++++|++++|||+|+.++..+.+...+.+|++..+.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 43 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 43 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE
Confidence 35799999999999999999999999999889999987664
No 59
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=59.65 Aligned_cols=43 Identities=30% Similarity=0.516 Sum_probs=29.3
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
....+|++++|++++|||+|+.++..+.|...+.||++.++..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~ 59 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA 59 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEE
Confidence 3457999999999999999999999999998999999877643
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=2.1e-09 Score=58.62 Aligned_cols=42 Identities=29% Similarity=0.489 Sum_probs=37.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
...+|++++|++++|||+|+.++..+.+...+.||++.++..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~ 67 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH 67 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEE
Confidence 457999999999999999999999999998999999977743
No 61
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.97 E-value=2.6e-09 Score=58.21 Aligned_cols=42 Identities=33% Similarity=0.562 Sum_probs=37.5
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
...++++++|++++|||+|+.++..+.+...+.+|.+..+..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 53 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK 53 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEE
Confidence 347899999999999999999999999998999999977643
No 62
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=3.1e-09 Score=56.11 Aligned_cols=41 Identities=32% Similarity=0.630 Sum_probs=36.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
..+|++++|++++|||+|++++..+.+...+.||++.++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~ 42 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ 42 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE
Confidence 36899999999999999999999999988889999877653
No 63
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.96 E-value=3e-09 Score=57.87 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=35.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...+|++++|++++|||+|+.++..+.|...+.||.+ +|.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~ 57 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFK 57 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEE
Confidence 4589999999999999999999999999988889854 454
No 64
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.96 E-value=4.4e-10 Score=60.19 Aligned_cols=42 Identities=29% Similarity=0.676 Sum_probs=27.7
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
....+|++++|++++|||+|+.++..+.+...+.||++.++.
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~ 46 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS 46 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE
Confidence 345799999999999999999999999999888999986654
No 65
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.96 E-value=3.3e-09 Score=55.73 Aligned_cols=41 Identities=34% Similarity=0.608 Sum_probs=36.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
..+|++++|++++|||+|++++..+.+...+.+|.+.++..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~ 43 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK 43 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEE
Confidence 46899999999999999999999999988899999877754
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.96 E-value=3.5e-09 Score=55.57 Aligned_cols=38 Identities=29% Similarity=0.623 Sum_probs=34.9
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
.+|++++|++++|||+|+.++..+.+...+.+|++..+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~ 40 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY 40 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE
Confidence 58999999999999999999999999988899988655
No 67
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.95 E-value=5.8e-10 Score=61.89 Aligned_cols=46 Identities=30% Similarity=0.573 Sum_probs=40.5
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
....+|++++|++++|||||++++..+.+...+.+|+|.++.....
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~ 57 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF 57 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEE
Confidence 4568999999999999999999999999988889999988776654
No 68
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.94 E-value=2.2e-09 Score=60.24 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=32.4
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcC--cCCCcccCCeeeeEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADD--SYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~--~~~~~~~~tig~~~~~~~~ 50 (57)
....+|++++|+++||||||+++|... .|...+ +++|.++..+.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i 80 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTL 80 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEE
Confidence 456799999999999999999999964 344443 567777765544
No 69
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.94 E-value=1.2e-09 Score=60.09 Aligned_cols=46 Identities=28% Similarity=0.243 Sum_probs=34.1
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
....+|++++|+++||||||++++....+...+.|+.+.++.....
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~ 65 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRI 65 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEE
Confidence 3567999999999999999999997655544455667766655543
No 70
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.93 E-value=3.5e-09 Score=57.38 Aligned_cols=42 Identities=33% Similarity=0.661 Sum_probs=37.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
...++++++|++++|||+|++++..+.+...+.||++..+..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~ 47 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ 47 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeE
Confidence 456999999999999999999999999988889999876653
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.93 E-value=2.7e-09 Score=58.50 Aligned_cols=43 Identities=30% Similarity=0.687 Sum_probs=38.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
...+|++++|++++|||+|+.++..+.+...+.||++.++...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~ 65 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD 65 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE
Confidence 3578999999999999999999999999988999999887543
No 72
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.92 E-value=3.2e-09 Score=58.18 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=36.6
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...+|++++|++++|||+|++++..+.+...+.+|++.++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 61 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY 61 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 3579999999999999999999999999999999999777
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.92 E-value=5.8e-09 Score=56.35 Aligned_cols=41 Identities=32% Similarity=0.566 Sum_probs=36.6
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...++++++|++++|||||+.++..+.+...+.+|.+..+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 59 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR 59 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE
Confidence 45799999999999999999999999998888898887664
No 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.90 E-value=3.9e-09 Score=58.52 Aligned_cols=41 Identities=34% Similarity=0.630 Sum_probs=30.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
..+|++++|++++|||+|+.++..+.+...+.||++.++..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~ 73 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV 73 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEE
Confidence 46999999999999999999999999988889999877643
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.90 E-value=4e-10 Score=61.41 Aligned_cols=46 Identities=28% Similarity=0.524 Sum_probs=10.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcC--cCCCcccCCeeeeEEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADD--SYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~--~~~~~~~~tig~~~~~~~~~ 51 (57)
...++++++|++++|||+|+.++..+ .+...+.+|++.++....+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~ 65 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVT 65 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEE
Confidence 35789999999999999999999998 88888999999887665543
No 76
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.90 E-value=7.8e-09 Score=55.45 Aligned_cols=40 Identities=33% Similarity=0.606 Sum_probs=35.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
..+|++++|++++|||+|++++..+.+...+.+|.+..+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 42 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR 42 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEE
Confidence 5799999999999999999999999998888898875544
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.89 E-value=4.6e-09 Score=57.82 Aligned_cols=43 Identities=33% Similarity=0.661 Sum_probs=31.7
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
...+|++++|++++|||+|+.++..+.+...+.||++.++...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~ 65 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD 65 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE
Confidence 3478999999999999999999999999988899999877543
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.88 E-value=2.1e-09 Score=57.96 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=33.7
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCc-----------ccCCeeeeEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDS-----------YISTIGVDFVSL 48 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~-----------~~~tig~~~~~~ 48 (57)
....+|++++|++++|||+|+ +++.+.+... +.||+|.++...
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 64 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPL 64 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCS
T ss_pred cccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeeccc
Confidence 356899999999999999999 6777777666 346888776543
No 79
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.87 E-value=6e-09 Score=55.30 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=31.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
..+|++++|++++|||+|++++..+.+... .++.|.++.....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~ 45 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTL 45 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEE
Confidence 568999999999999999999999888654 3567777655543
No 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.87 E-value=8.7e-09 Score=53.89 Aligned_cols=39 Identities=31% Similarity=0.566 Sum_probs=35.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
.+|++++|++++|||+|++++..+.+...+.+|.+..+.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~ 41 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR 41 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEE
Confidence 589999999999999999999999998888899886653
No 81
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.87 E-value=2.9e-09 Score=58.77 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=38.9
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
....+|++++|++++|||+|++++..+.+...+.+|++.++.....
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~ 53 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTF 53 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEE
Confidence 3457999999999999999999999999988888999977765543
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.85 E-value=7.4e-09 Score=57.02 Aligned_cols=41 Identities=29% Similarity=0.690 Sum_probs=34.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...+|++++|++++|||+|+.++..+.+...+.+|++..+.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~ 68 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 68 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeE
Confidence 45799999999999999999999999999999999986554
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.85 E-value=8.9e-09 Score=55.45 Aligned_cols=39 Identities=28% Similarity=0.611 Sum_probs=33.7
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...++++++|++++|||+|++++..+. ...+.||++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~ 54 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI 54 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce
Confidence 457999999999999999999999888 677889998554
No 84
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.83 E-value=7.8e-09 Score=56.64 Aligned_cols=44 Identities=32% Similarity=0.437 Sum_probs=31.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc--CcCCCcccCCeeeeEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD--DSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~--~~~~~~~~~tig~~~~~~~~ 50 (57)
...+|++++|+++||||||++++.+ ..|...+ +++|.++..+.+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 49 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTL 49 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEE
Confidence 3569999999999999999999995 3445443 457777765543
No 85
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.83 E-value=4.7e-09 Score=55.94 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=35.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
...++++++|++++|||+|+.++..+.+...+.++++.++...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~ 48 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY 48 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEE
Confidence 4578999999999999999999999999887777776555443
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.82 E-value=1.4e-08 Score=53.68 Aligned_cols=39 Identities=28% Similarity=0.489 Sum_probs=33.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
..++++++|++++|||+|+.++..+.+. .+.||++....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~ 44 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVE 44 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceE
Confidence 4689999999999999999999998886 46789886543
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.80 E-value=9e-09 Score=55.76 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=33.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCc-CCCcccCCeeee
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDS-YVDSYISTIGVD 44 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~-~~~~~~~tig~~ 44 (57)
...+|++++|++++|||+|++++..+. +...+.+|++..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~ 58 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS 58 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee
Confidence 457999999999999999999999988 677788999844
No 88
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.80 E-value=1.4e-08 Score=53.72 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=26.5
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
.+|++++|++++|||+|+.++....+...+.++.+.++.....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRI 44 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEE
Confidence 5899999999999999999999877776666666666655543
No 89
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.79 E-value=4.1e-09 Score=56.83 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=33.7
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...+|++++|++++|||+|++++..+++ ..+.+|+|..+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~ 58 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE 58 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE
Confidence 4579999999999999999999999988 567889886543
No 90
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.79 E-value=1.7e-08 Score=54.31 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
..++++++|++|+|||||++++....+.....|++..++....+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~ 49 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEF 49 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEE
Confidence 56899999999999999999999877766666776666554443
No 91
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.78 E-value=3.8e-09 Score=60.44 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=35.0
Q ss_pred cceeeeEEEECCC---------CCchHHHHHHhhc---CcCCCcccCCe-eeeEE
Q 035406 5 YDYLFKLLLIGDS---------SVGKSCLLLRFAD---DSYVDSYISTI-GVDFV 46 (57)
Q Consensus 5 ~~~~~ki~viG~~---------~vGKtsl~~~~~~---~~~~~~~~~ti-g~~~~ 46 (57)
....+|++++|++ +||||||++++.. +.|...+.||+ +.+|.
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~ 70 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFG 70 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHT
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccc
Confidence 4567999999999 9999999999999 67777778876 55543
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=6.9e-09 Score=56.10 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=34.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...++++++|++++|||+|++++..+++. .+.||+|.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~ 52 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV 52 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce
Confidence 34789999999999999999999999887 6788988544
No 93
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.77 E-value=1.6e-08 Score=53.89 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=29.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
.++++++|++|+|||||++++....+.....|+...++..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~ 42 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKE 42 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeE
Confidence 5899999999999999999999887765556665555443
No 94
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.76 E-value=1.1e-08 Score=53.94 Aligned_cols=35 Identities=29% Similarity=0.573 Sum_probs=30.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeee
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~ 44 (57)
+|++++|++++|||+|+.++..+.|.. +.||++..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~ 35 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN 35 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee
Confidence 589999999999999999999988875 67898843
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.74 E-value=6.6e-09 Score=55.68 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=33.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...++++++|++++|||+|+.++..+++ ..+.||+|...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~ 54 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV 54 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce
Confidence 4579999999999999999999999888 56788988544
No 96
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.73 E-value=1.8e-08 Score=55.44 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=32.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
...+|++++|++++|||+|+.++..+.|...+.++ +.++..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~ 45 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI 45 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE
Confidence 45799999999999999999999999998877654 445543
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.72 E-value=1.7e-08 Score=54.60 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=32.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeee
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~ 44 (57)
...+|++++|++++|||+|+.++..+.+. .+.||+|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~ 51 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN 51 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE
Confidence 46799999999999999999999988664 577888854
No 98
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.71 E-value=1.6e-08 Score=62.82 Aligned_cols=44 Identities=27% Similarity=0.359 Sum_probs=29.4
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
....+|++++|++++|||||+.++....|...+.||+|.++.++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~ 81 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK 81 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEe
Confidence 34579999999999999999999999999999999999988754
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.71 E-value=8.4e-09 Score=56.35 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=33.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...+|++++|++++|||+|+.++..+++.. +.||++...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~ 65 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV 65 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeE
Confidence 347899999999999999999999988874 578888443
No 100
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.70 E-value=2.2e-08 Score=53.79 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=31.2
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeee
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~ 44 (57)
+|++++|++++|||||++++..+.+...+.|++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~ 37 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK 37 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce
Confidence 689999999999999999999999887777765433
No 101
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.68 E-value=4e-08 Score=53.53 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=31.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
..+|++++|++++|||+|+.++..+.+. .+.||++...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~ 59 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS 59 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe
Confidence 4679999999999999999999998886 5678888654
No 102
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.67 E-value=1.9e-08 Score=54.34 Aligned_cols=39 Identities=28% Similarity=0.551 Sum_probs=33.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...+|++++|++++|||+|++++..+++.. +.||++...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~ 58 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL 58 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE
Confidence 457999999999999999999999888864 678888543
No 103
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.66 E-value=7.5e-08 Score=55.70 Aligned_cols=41 Identities=32% Similarity=0.732 Sum_probs=36.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
..++++++|++++|||+|+.++..+.+...+.+|++..+..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~ 194 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA 194 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEE
Confidence 45899999999999999999999999999999999877643
No 104
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.65 E-value=2.7e-08 Score=54.64 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=28.9
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
..+|++++|++++|||+|++++..+.+. .+.||++.+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~ 62 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE 62 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeE
Confidence 4689999999999999999999998875 46788886543
No 105
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.63 E-value=2.3e-08 Score=55.12 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=32.5
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCC---cccCCeeeeE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVD---SYISTIGVDF 45 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~---~~~~tig~~~ 45 (57)
....++++++|++|+|||+|+.++....+.. .+.|+++.++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~ 52 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 52 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe
Confidence 3457899999999999999999999988765 3566666443
No 106
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.62 E-value=4.2e-08 Score=53.02 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=24.1
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
..++++++|++++|||||++++..+.|...+.++.|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~ 60 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQ 60 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCcee
Confidence 468999999999999999999999987777777776443
No 107
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.06 E-value=3.9e-09 Score=57.83 Aligned_cols=41 Identities=29% Similarity=0.690 Sum_probs=36.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
...+|++++|++++|||+|+.++..+.+...+.+|++..+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 68 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS 68 (204)
Confidence 34689999999999999999999999998888898886653
No 108
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.61 E-value=6.5e-08 Score=50.95 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=24.6
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
.+|++++|++++|||+|++++.+..+. ...++.+..+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~ 39 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYD 39 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceE
Confidence 589999999999999999999876654 34567776553
No 109
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.60 E-value=3.5e-08 Score=59.20 Aligned_cols=38 Identities=21% Similarity=0.110 Sum_probs=31.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCCC---cccCCeeeeEEE
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYVD---SYISTIGVDFVS 47 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~~---~~~~tig~~~~~ 47 (57)
|++++|++|||||+|+.++..+.++. .+.||+|.++..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~ 41 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH 41 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE
Confidence 68999999999999999887665543 367999998864
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.60 E-value=1.4e-07 Score=55.28 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=35.0
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcC--cCC-CcccCCeeeeEEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADD--SYV-DSYISTIGVDFVSLS 49 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~--~~~-~~~~~tig~~~~~~~ 49 (57)
..+|++++|++++|||||+.++..+ .+. ..+.+|++.++....
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~ 47 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR 47 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEE
Confidence 3689999999999999999999887 443 356799998887554
No 111
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.7e-08 Score=53.26 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=26.6
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCC---cccCCeeee
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVD---SYISTIGVD 44 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~---~~~~tig~~ 44 (57)
...++++++|++|+|||||+.++....+.. .+.|+++.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~ 87 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD 87 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee
Confidence 457899999999999999999999987754 344555443
No 112
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.54 E-value=3.2e-08 Score=54.89 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=34.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
..++++++|++|+|||||+.++....+...+.++++.|+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 3589999999999999999999988777767788888764
No 113
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.53 E-value=1.7e-07 Score=50.37 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=30.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...++++++|++++|||||++++..+.+ ..+.++.+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~ 59 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTR 59 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCcc
Confidence 3468999999999999999999998874 34456655433
No 114
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.52 E-value=4.8e-08 Score=57.84 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=34.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
..+|++++|++++|||+|+.++..+.+... .||++.++...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~ 204 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV 204 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEE
Confidence 357999999999999999999999998765 47888776543
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.51 E-value=1.8e-07 Score=53.80 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=33.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSL 48 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~ 48 (57)
...++++++|++++|||||++++.+..+.....|.+..+....
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~ 45 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG 45 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEE
Confidence 4578999999999999999999998877555556555444433
No 116
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.49 E-value=2.1e-07 Score=53.44 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=36.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
.+++.++|++|+|||||++++.+..+.....|++..++......
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~ 46 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIME 46 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEE
Confidence 58999999999999999999999888666777777776655443
No 117
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.48 E-value=8e-08 Score=52.42 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=27.1
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFV 46 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~ 46 (57)
....+|++++|+++||||+|++++.+ .+... +|++.++.
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~ 55 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLEST 55 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccc
Confidence 45689999999999999999986655 44332 55555544
No 118
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.48 E-value=3.7e-07 Score=51.33 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=27.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYIS 39 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~ 39 (57)
...++++++|++|+|||||++++....+.....+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 3479999999999999999999999887665544
No 119
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.47 E-value=3.5e-07 Score=47.80 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=23.2
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
.|++++|++++|||+|++++..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~ 27 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA 27 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee
Confidence 68999999999999999999988753
No 120
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.46 E-value=2.5e-07 Score=53.24 Aligned_cols=45 Identities=29% Similarity=0.516 Sum_probs=29.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhh-cCcCCCcc-------cCCeeeeEEEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFA-DDSYVDSY-------ISTIGVDFVSLSS 50 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~-~~~~~~~~-------~~tig~~~~~~~~ 50 (57)
...++++++|.+|+|||||++++. .+.+...+ .+|++.++.....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 58 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 58 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEE
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEE
Confidence 357999999999999999999854 55666655 6888877765543
No 121
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.46 E-value=2.4e-07 Score=51.66 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=26.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
...++++++|++++|||||++++..+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 34689999999999999999999998875
No 122
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.43 E-value=5.6e-07 Score=55.25 Aligned_cols=41 Identities=22% Similarity=0.446 Sum_probs=34.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVS 47 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~ 47 (57)
...+|++++|++++|||+|+.++..+++.. +.||++.++..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~ 360 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET 360 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE
Confidence 346899999999999999999999998764 56899977654
No 123
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.39 E-value=9.3e-07 Score=47.48 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.6
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++++++|++++|||||++++....+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 357999999999999999999998764
No 124
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.34 E-value=5.1e-07 Score=49.34 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=23.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
...++.++|++|+|||||++++.+..+...+.|+.|..+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~ 63 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence 357899999999999999999998876556667777554
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.34 E-value=6.5e-07 Score=51.74 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=33.9
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSS 50 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~ 50 (57)
.++++++|++++|||||++++.+..+.....|.+..+......
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~ 45 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQF 45 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEE
Confidence 5899999999999999999999887765566666555554443
No 126
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.32 E-value=1.5e-06 Score=49.24 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=28.0
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCc-CCCcccCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDS-YVDSYIST 40 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~-~~~~~~~t 40 (57)
..++|+++|++++|||||+.++.... +...+.|+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~ 55 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ 55 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC
Confidence 46899999999999999999999876 55555443
No 127
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.27 E-value=1.3e-06 Score=49.75 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=25.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVD 35 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~ 35 (57)
...++++++|.+|+|||||++++....+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~ 48 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFF 48 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence 457999999999999999999999877644
No 128
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.27 E-value=1.3e-06 Score=50.26 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=33.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeEEEEEEE
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFVSLSSI 51 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~~~~~~~ 51 (57)
.+++++|++++|||||++++.+..+.....|.+..+.......
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~ 44 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFL 44 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEE
Confidence 4799999999999999999998877655667776666555443
No 129
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.21 E-value=2.4e-06 Score=49.57 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=25.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYIS 39 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~ 39 (57)
.++++++|++++|||||++++.+..+.....|
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p 34 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP 34 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC
Confidence 57999999999999999999998654333334
No 130
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.17 E-value=2.3e-06 Score=51.33 Aligned_cols=42 Identities=29% Similarity=0.586 Sum_probs=27.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhh-cCcCCCccc--------CCeeeeEEEE
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFA-DDSYVDSYI--------STIGVDFVSL 48 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~-~~~~~~~~~--------~tig~~~~~~ 48 (57)
..++++++|++|+|||||+.++. ...+...+. +|++.++...
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~ 86 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTV 86 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEE
Confidence 46899999999999999999954 455554442 6777665443
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.15 E-value=1.7e-06 Score=47.63 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=24.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++++++|++++|||||++++....+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~ 54 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKR 54 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 468999999999999999999998874
No 132
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.02 E-value=1.9e-05 Score=45.14 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++++++|+.++|||||++++....+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999999998774
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.99 E-value=7.9e-06 Score=49.80 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=25.1
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
..++++++|+++||||||++++...++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~ 201 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV 201 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce
Confidence 4689999999999999999999988763
No 134
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.98 E-value=1.6e-05 Score=48.83 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
..+++.++|++|+|||||++.+.+..++
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4688999999999999999999987763
No 135
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.96 E-value=1.1e-05 Score=47.40 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=26.4
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
|+.. ....+++++|.+++|||||++++....+.
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ 33 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVA 33 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence 5554 34568999999999999999999988774
No 136
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.95 E-value=6.6e-06 Score=48.25 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=21.2
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcC-cCCCc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADD-SYVDS 36 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~-~~~~~ 36 (57)
..++++++|++|+|||||++++... .++.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~ 47 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPER 47 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-------
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCC
Confidence 4689999999999999999997654 55543
No 137
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.94 E-value=7.5e-06 Score=46.94 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=25.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
...+++++|++++|||||++++.+..+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 4579999999999999999999998874
No 138
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.92 E-value=9.4e-06 Score=46.51 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=24.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++++++|++|+|||||++++....+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999999998775
No 139
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.82 E-value=1.2e-05 Score=49.32 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=24.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeee
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVD 44 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~ 44 (57)
....+++++|.++||||||++++....+. ...++.|..
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t 58 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVT 58 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC----------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcc
Confidence 34579999999999999999999987664 233444543
No 140
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.80 E-value=7.3e-05 Score=45.20 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=31.6
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhc---CcCCCcccC--CeeeeEEE
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFAD---DSYVDSYIS--TIGVDFVS 47 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~---~~~~~~~~~--tig~~~~~ 47 (57)
....+++.++|..++|||||+.++.. ..+.++..+ |+...|..
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~ 54 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFAD 54 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeee
Confidence 35678999999999999999999983 345555555 77666554
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.79 E-value=5.8e-05 Score=45.66 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=28.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc---CcCCCcccC--CeeeeEEEE
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD---DSYVDSYIS--TIGVDFVSL 48 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~---~~~~~~~~~--tig~~~~~~ 48 (57)
...+++.++|..++|||||+.++.. ..+.++..+ |+...|...
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~ 53 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADC 53 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccc
Confidence 4568999999999999999999983 345555555 776666543
No 142
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.78 E-value=2.7e-05 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=20.6
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+++++|.++||||||++++.....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~ 26 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK 26 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3789999999999999999998764
No 143
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.76 E-value=3.1e-05 Score=46.00 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.3
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
..+++++|++++||||+++++.+..|.
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcC
Confidence 448999999999999999999998774
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.75 E-value=4e-05 Score=46.72 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.1
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..+++.++|++|+|||||++++.+..+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc
Confidence 358999999999999999999998754
No 145
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.73 E-value=1.4e-05 Score=43.96 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..+++++|.+|+|||+++.++....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998653
No 146
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.65 E-value=5.7e-05 Score=44.17 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
....++.++|.+++|||||++++....+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 3456899999999999999999998765
No 147
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.63 E-value=7.3e-05 Score=43.78 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=26.1
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
+...-.+.++|.+++|||||++++.+..+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~ 36 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVS 36 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 445678999999999999999999988764
No 148
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.61 E-value=5.2e-05 Score=45.93 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+++.++|.+++|||||++++....+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~ 27 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGI 27 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 36899999999999999999998664
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.61 E-value=3.1e-05 Score=47.16 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=23.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeee
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGV 43 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~ 43 (57)
..+++++|.++||||||++++....+. ...++.|.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~ 37 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGV 37 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC---------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCC
Confidence 368999999999999999999987663 23444554
No 150
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.60 E-value=6e-05 Score=46.86 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.++++++|++++|||||++++...+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999999999875
No 151
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.60 E-value=4.5e-05 Score=44.23 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.|++.++|++|+|||||++.+.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 588999999999999999987764
No 152
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.58 E-value=5.7e-05 Score=46.24 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..++++++|++++|||||++++...+
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999999764
No 153
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.56 E-value=2.4e-05 Score=48.03 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=23.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
...++++++|+.++|||||++++....+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~ 59 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNV 59 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC---
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4578999999999999999999998876
No 154
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.56 E-value=6e-05 Score=43.57 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=24.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
...+++++|.+++|||||++++.+..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 457899999999999999999998876
No 155
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.55 E-value=4.5e-05 Score=45.32 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=25.0
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
...+++++|++++|||||++++.+..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3578999999999999999999998874
No 156
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.54 E-value=9.6e-05 Score=45.26 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=22.2
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
..+++.++|.+++|||||++++....+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~ 48 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQAS 48 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 4578999999999999999999987553
No 157
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.53 E-value=8.5e-05 Score=39.66 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhc
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
|..+......++++|.+|+|||+++..+..
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444444445688999999999999987653
No 158
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.51 E-value=7.1e-05 Score=40.54 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-++++|++|+|||++++.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998875
No 159
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00018 Score=42.78 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.2
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++++++|.+|+|||||++++....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999998765
No 160
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.49 E-value=8.6e-05 Score=40.63 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+++.++|++|+|||++++.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999987664
No 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.47 E-value=2.7e-05 Score=48.25 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.6
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++++++|++++|||||++++...++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 357899999999999999999987654
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.46 E-value=0.00014 Score=43.76 Aligned_cols=26 Identities=15% Similarity=0.269 Sum_probs=21.1
Q ss_pred ee-EEEECCCCCchHHHHHHhhcCcCC
Q 035406 9 FK-LLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 9 ~k-i~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
++ +.++|.+++|||||++++....+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~ 205 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK 205 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC---
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 45 889999999999999999987663
No 163
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.44 E-value=0.00018 Score=43.48 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=24.1
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
....+++.++|+.++|||||++++...
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 456799999999999999999999874
No 164
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.44 E-value=0.0001 Score=40.89 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=18.1
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
|+++|++|+||++|+.++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998874
No 165
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.41 E-value=0.00011 Score=40.51 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.++|++|+||||+++.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998764
No 166
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.41 E-value=2.3e-05 Score=49.48 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=29.9
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCCcccCCeeeeE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDF 45 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~~~ 45 (57)
..+++++|..++|||||+.++....+.....+++..++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i 41 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI 41 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE
Confidence 47899999999999999999998776655555554443
No 167
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.39 E-value=0.00013 Score=42.08 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=22.6
Q ss_pred eeEEEECCCCCchHHHHHHhhcCcCCCcccCCeee
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGV 43 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~~~~~~~~tig~ 43 (57)
++++++|.+++|||||++++....... ..++.|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~ 133 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGI 133 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCC
Confidence 589999999999999999999766532 3344443
No 168
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.33 E-value=0.00014 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
+++.++|.+++|||||++++....
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 589999999999999999999765
No 169
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.33 E-value=0.00015 Score=39.36 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.8
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+.++|++|+||||+++.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57899999999999998874
No 170
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.32 E-value=0.00061 Score=41.73 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...++++++|..++|||||+.+++.
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999999999843
No 171
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.31 E-value=0.00016 Score=40.76 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-++++|++|+|||||++.+...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4678999999999999987753
No 172
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.30 E-value=5.7e-05 Score=47.02 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=23.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.++++++|.+++|||||++++...++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~ 268 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR 268 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC
Confidence 37999999999999999999998754
No 173
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.30 E-value=0.00018 Score=39.08 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+.++|++|+||||+++.+...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4678999999999999987753
No 174
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.29 E-value=0.00033 Score=44.18 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=25.7
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCcCC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
....+++++|..++|||||++++++..+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 34689999999999999999999998763
No 175
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.28 E-value=0.00018 Score=38.77 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=19.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-.++++|++|+||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35789999999999999988764
No 176
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.27 E-value=0.0002 Score=39.60 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-++++|++|+|||+++..+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4678999999999999988754
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.25 E-value=0.00039 Score=44.84 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=24.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
..++++++|++++|||||++++.+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998764
No 178
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.25 E-value=0.00023 Score=39.88 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-++++|++|+|||+|++.+..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 567899999999999998874
No 179
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.23 E-value=0.00022 Score=39.82 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.++|++|+|||++++.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 467999999999999998775
No 180
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.22 E-value=0.00024 Score=39.17 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.0
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|++|+|||++++.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999998765
No 181
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.20 E-value=0.00049 Score=42.70 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=24.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcCc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
...+++.++|..++|||||+.++....
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCC
Confidence 457899999999999999999998766
No 182
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.19 E-value=0.00029 Score=38.68 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-++++|.+|+|||+++..+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998764
No 183
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.19 E-value=0.00032 Score=40.84 Aligned_cols=26 Identities=38% Similarity=0.566 Sum_probs=23.0
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..++++++|.++||||||++++....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 35789999999999999999998754
No 184
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.17 E-value=0.00026 Score=38.13 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=15.8
Q ss_pred eEEEECCCCCchHHHHHH
Q 035406 10 KLLLIGDSSVGKSCLLLR 27 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~ 27 (57)
-+.++|++|+|||++++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 357899999999999995
No 185
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.17 E-value=0.00034 Score=36.59 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=18.0
Q ss_pred eeEEEECCCCCchHHHHHHh
Q 035406 9 FKLLLIGDSSVGKSCLLLRF 28 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~ 28 (57)
+-+++.|.+|+|||+++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999988
No 186
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.16 E-value=0.00055 Score=41.78 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
...++.++|.+|+|||||++.+.....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 356899999999999999999998654
No 187
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.16 E-value=0.00032 Score=36.93 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.4
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|.+|+||||++..+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998764
No 188
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.16 E-value=0.00035 Score=38.36 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+++++.|.+|+|||+++..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988753
No 189
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.15 E-value=0.00033 Score=36.92 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987764
No 190
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00038 Score=38.30 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+++++.|.+|+|||+++..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998753
No 191
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.14 E-value=0.00033 Score=43.26 Aligned_cols=26 Identities=27% Similarity=0.627 Sum_probs=22.2
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+++.++|++|+|||||++.+.+..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 36799999999999999999887644
No 192
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.11 E-value=0.00061 Score=41.52 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
...++++++|..++|||||+.++...
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhh
Confidence 45689999999999999999999854
No 193
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.09 E-value=0.00052 Score=37.38 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=20.2
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
....+++.|.+|+|||+++..+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346789999999999999987764
No 194
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.09 E-value=0.00044 Score=36.80 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-+++.|.+|+|||++.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999988764
No 195
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.08 E-value=0.0004 Score=37.68 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..+.++|++|+|||+++..+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999887543
No 196
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.07 E-value=0.00044 Score=38.10 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-..+.++|++|+|||||++.+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999986653
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.07 E-value=0.00033 Score=42.38 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.3
Q ss_pred eeEEEECCCCCchHHHHHHhhcCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
+++.++|.+++|||||++++....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999988653
No 198
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.06 E-value=0.00048 Score=36.50 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||+++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4578999999999999998875
No 199
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.05 E-value=0.00046 Score=36.56 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..++++|.+|+|||++++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999987764
No 200
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.04 E-value=0.00049 Score=38.21 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=17.5
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
-+.++|++|+|||+|+..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 35789999999999999776
No 201
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.04 E-value=0.00056 Score=36.96 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=21.9
Q ss_pred CccceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 3 ~~~~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.-......+.+.|.+|+|||++...+...
T Consensus 3 ~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 3 HEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 33445678899999999999999987753
No 202
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.04 E-value=0.00049 Score=37.10 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.3
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 467899999999999998864
No 203
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00059 Score=43.53 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
...++++++|..++|||||+.+++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 34689999999999999999999865
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.03 E-value=0.00037 Score=37.41 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987764
No 205
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.02 E-value=0.00057 Score=38.44 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
..++++|++|+||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999887
No 206
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.02 E-value=0.00061 Score=36.75 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.4
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|.+|+||||++..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999887764
No 207
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.01 E-value=0.00054 Score=37.36 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||+++..+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999987754
No 208
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.00063 Score=37.18 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..++++|.+|+|||++...+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999987763
No 209
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.00 E-value=0.00053 Score=37.49 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.5
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..++++|.+|+|||++++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987753
No 210
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.00 E-value=0.00043 Score=42.77 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
...++++++|..++|||||+.+++..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34699999999999999999998754
No 211
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.99 E-value=0.00056 Score=37.41 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.2
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+.++|++|+||||+++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999987654
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.99 E-value=0.00055 Score=36.89 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|+.|+|||+|++.+....
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999877643
No 213
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.99 E-value=0.00058 Score=41.69 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
...++++++|..++|||||+.++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999863
No 214
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.99 E-value=0.00074 Score=41.59 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCCccceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 1 m~~~~~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
|.. ....++++++|..++|||||+.+++..
T Consensus 1 M~~-~~~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 1 MGK-EKSHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp -CC-CCEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCC-CCceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 443 345799999999999999999999753
No 215
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.99 E-value=0.00068 Score=38.47 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.3
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+.++|++|+|||||++.+.+-
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 579999999999999987754
No 216
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.98 E-value=0.00065 Score=36.27 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..|++.|.+|+|||+++..+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999987654
No 217
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.96 E-value=0.00059 Score=43.50 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=28.5
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCC----cccCCeeeeEE
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVD----SYISTIGVDFV 46 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~----~~~~tig~~~~ 46 (57)
..++.++|..++|||||+.++....+.. ...+++|..+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~ 47 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI 47 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEE
Confidence 5789999999999999999998765533 22345665443
No 218
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.96 E-value=0.00068 Score=40.44 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+.++|.+|+|||||++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999885
No 219
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.95 E-value=0.0007 Score=37.87 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+.++++|++|+||+|.+.++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 220
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.95 E-value=0.00083 Score=43.33 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=24.3
Q ss_pred CccceeeeEEEECCCCCchHHHHHHhhc
Q 035406 3 NEYDYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 3 ~~~~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.......++.++|..++|||||+.++..
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHH
Confidence 4446688999999999999999999983
No 221
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.94 E-value=0.0008 Score=40.60 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.7
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.++|..++|||||+.++..
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHh
Confidence 4578999999999999999999986
No 222
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.92 E-value=0.00042 Score=41.44 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
++.++|.+++|||||+.++....
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998764
No 223
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.92 E-value=0.00067 Score=37.10 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=18.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-++++|++|+|||++++.+..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999887653
No 224
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.91 E-value=0.00085 Score=35.82 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||+++..+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999887654
No 225
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.91 E-value=0.00091 Score=42.50 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.0
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...++++++|..++|||||+.+++.
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHH
Confidence 4568999999999999999999853
No 226
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.91 E-value=0.00086 Score=35.91 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..++++|.+|+|||++...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998753
No 227
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.91 E-value=0.0009 Score=40.37 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..+++.++|..++|||||+.++...
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhCh
Confidence 3689999999999999999999863
No 228
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.90 E-value=0.00063 Score=37.31 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|++|+|||+|+..+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999876
No 229
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.90 E-value=0.00099 Score=36.28 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+.+++.|.+|+|||+++..+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999987754
No 230
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.89 E-value=0.00056 Score=36.08 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987764
No 231
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.89 E-value=0.0011 Score=35.32 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999987754
No 232
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.87 E-value=0.00077 Score=36.94 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999987754
No 233
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.87 E-value=0.00085 Score=37.76 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+.++|++|+|||||++.+.+-
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999987754
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.86 E-value=0.001 Score=35.96 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
...++++|.+|+|||++...+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999877643
No 235
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.86 E-value=0.0011 Score=35.39 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.2
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988763
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.85 E-value=0.0011 Score=37.80 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999987764
No 237
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.85 E-value=0.00096 Score=40.22 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhh
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
....|++++|.+++|||++++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 346899999999999999999864
No 238
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.001 Score=36.64 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+.++|.+|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999987654
No 239
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.84 E-value=0.00084 Score=36.99 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+++++.|.+|+|||+++..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988754
No 240
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.84 E-value=0.0011 Score=38.23 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.3
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+.++|++|+|||||++.+.+-
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999987764
No 241
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.84 E-value=0.0012 Score=37.75 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999877643
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.84 E-value=0.00083 Score=36.54 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+.+.+.|.+|+|||+++..+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4688999999999999988765
No 243
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.83 E-value=0.0014 Score=37.24 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999987754
No 244
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.83 E-value=0.00094 Score=36.17 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.2
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999987764
No 245
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.82 E-value=0.00089 Score=36.97 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=18.0
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.++|++|+|||+++..+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 467899999999999987664
No 246
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.82 E-value=0.00049 Score=38.34 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=14.1
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
-+.++|++|+|||++++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999888
No 247
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.81 E-value=0.001 Score=37.77 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999987754
No 248
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.81 E-value=0.0013 Score=37.99 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=18.8
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+.+-.
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 5789999999999999887643
No 249
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.81 E-value=0.0012 Score=34.76 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+++++.|.+|+|||++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999987764
No 250
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.80 E-value=0.0012 Score=37.29 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+.+++.|.+|+|||+++.++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 251
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.80 E-value=0.0012 Score=35.43 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999988754
No 252
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.80 E-value=0.00081 Score=40.04 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.3
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.-++.++|++|+|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999987653
No 253
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.80 E-value=0.0011 Score=38.63 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||||++.+....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 46789999999999999887644
No 254
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.80 E-value=0.001 Score=36.35 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.0
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 367889999999999998774
No 255
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.80 E-value=0.001 Score=35.70 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.3
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999987764
No 256
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.79 E-value=0.00093 Score=38.86 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=19.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..-+++.|.+|+|||+++..+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998864
No 257
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.79 E-value=0.0012 Score=37.85 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999999999999877543
No 258
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.78 E-value=0.0013 Score=37.12 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999999887643
No 259
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.78 E-value=0.0013 Score=38.36 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
+.++|++|+|||||++.+.+-
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999987764
No 260
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.78 E-value=0.00099 Score=38.39 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.1
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.++|++|+||||+++.+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 478999999999999987664
No 261
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.78 E-value=0.001 Score=37.42 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=18.2
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
++++|++|+|||++++.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999998765
No 262
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.77 E-value=0.0014 Score=35.45 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||+++..+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999988764
No 263
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.77 E-value=0.0011 Score=37.91 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999988864
No 264
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.76 E-value=0.0014 Score=36.89 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999987754
No 265
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.76 E-value=0.0011 Score=35.29 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.3
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|.+|+|||++.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999887653
No 266
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.76 E-value=0.0013 Score=37.33 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999987764
No 267
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.76 E-value=0.0011 Score=40.15 Aligned_cols=24 Identities=33% Similarity=0.355 Sum_probs=20.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
.+.++|++|+|||||++.+....-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 468999999999999999986543
No 268
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.75 E-value=0.0011 Score=38.20 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999988874
No 269
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.75 E-value=0.0014 Score=38.00 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||+|++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 35789999999999999877643
No 270
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.74 E-value=0.0012 Score=36.18 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=18.6
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-+.+.|.+|+|||+++.++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3467899999999999998775
No 271
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.74 E-value=0.0014 Score=37.88 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 3578999999999999987754
No 272
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.73 E-value=0.0016 Score=35.53 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.5
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+.+.++|.+|+|||++...+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998875
No 273
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.73 E-value=0.0015 Score=37.64 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999988764
No 274
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.73 E-value=0.0006 Score=42.86 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.6
Q ss_pred ceeeeEEEECCCCCchHHHHHHhh
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
....+++++|.+++|||||+.+++
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHH
T ss_pred hcCCEEEEECCCCCcHHHHHHHHH
Confidence 346899999999999999999996
No 275
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.73 E-value=0.0016 Score=37.87 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||||++-+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 35789999999999999877643
No 276
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.72 E-value=0.0017 Score=34.68 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999887653
No 277
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.72 E-value=0.0013 Score=37.85 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999987754
No 278
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.72 E-value=0.0016 Score=37.69 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999887654
No 279
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.72 E-value=0.0012 Score=37.87 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3578999999999999987754
No 280
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.71 E-value=0.0012 Score=35.83 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|++|+|||+++..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999987664
No 281
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.71 E-value=0.001 Score=37.22 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3678999999999999987754
No 282
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.71 E-value=0.0017 Score=38.01 Aligned_cols=20 Identities=45% Similarity=0.640 Sum_probs=18.2
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
-+.++|++|+|||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999988
No 283
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.70 E-value=0.0014 Score=35.07 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
..+++.|.+|+|||+++..+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 468899999999999999876
No 284
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.70 E-value=0.0015 Score=36.37 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+.+++.|.+|+|||+++..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999988754
No 285
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.69 E-value=0.0015 Score=36.01 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.+++.|.+|+|||++...+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999987754
No 286
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.69 E-value=0.002 Score=39.61 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.8
Q ss_pred eeEEEECCCCCchHHHHHHhhcCc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..+.++|++|+|||||++.+.+-.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468899999999999999988743
No 287
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.68 E-value=0.0018 Score=38.68 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.1
Q ss_pred cceeeeEEEECCCCCchHHHHHHhh
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
.....|++++|...+|||++++++.
T Consensus 4 ~~~~~klLlLG~geSGKSTi~KQmk 28 (327)
T 3ohm_A 4 ARRELKLLLLGTGESGKSTFIKQMR 28 (327)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred hcccceEEEEcCCCccHHHHHHHHH
Confidence 3457999999999999999998754
No 288
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.68 E-value=0.0014 Score=35.70 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999876
No 289
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.67 E-value=0.0011 Score=35.25 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.2
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.++|++|+|||++++.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999998765
No 290
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.66 E-value=0.0017 Score=37.26 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999988764
No 291
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.66 E-value=0.0014 Score=36.37 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=19.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.|.+|+|||+++..+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999988763
No 292
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.65 E-value=0.0017 Score=38.60 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
....+.++|.+|+|||+++.++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999863
No 293
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.65 E-value=0.0015 Score=39.28 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhh
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
....|++++|..++|||++++++.
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQmk 26 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQLK 26 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCcceEEEECCCCCcHHHHHHHHH
Confidence 357899999999999999998654
No 294
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.65 E-value=0.0018 Score=37.36 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3578999999999999987754
No 295
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.65 E-value=0.0014 Score=38.76 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=19.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...-+.++|++|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345678999999999999987665
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.64 E-value=0.0021 Score=35.13 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.3
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
...+.+.|.+|+|||+++..+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999987753
No 297
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.64 E-value=0.0016 Score=36.00 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+.++|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3678999999999999998863
No 298
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.64 E-value=0.0014 Score=36.85 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||++++.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999987764
No 299
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.63 E-value=0.0014 Score=38.60 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.4
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||++++.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998765
No 300
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.63 E-value=0.0018 Score=34.76 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.4
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|.+|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998764
No 301
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.62 E-value=0.0019 Score=34.92 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=20.1
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..|++.|.+|+||||++..+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999988753
No 302
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.61 E-value=0.0016 Score=37.07 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.4
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
-++++|++|+|||++...+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 36789999999999998765
No 303
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.61 E-value=0.002 Score=38.72 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhh
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
....|++++|.+++|||++++++.
T Consensus 7 ~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 7 IHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceeEEEECCCCCcHHHHHHHHH
Confidence 457899999999999999999865
No 304
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.61 E-value=0.0016 Score=38.61 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=17.5
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
.+.++|++|+|||+|+..+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999998765
No 305
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.61 E-value=0.0015 Score=37.27 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=18.2
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
++++|++|+|||++++.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999988765
No 306
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.61 E-value=0.0016 Score=37.47 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+++.|++|+|||+++..+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4788999999999999988753
No 307
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.60 E-value=0.0017 Score=39.29 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEECCCCCchHHHHHHhhcCcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~~ 33 (57)
+.++|++|+|||||++.+.+-.-
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 57899999999999998876543
No 308
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.59 E-value=0.002 Score=34.42 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.3
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|.+|+|||++...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988765
No 309
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.59 E-value=0.0014 Score=36.23 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999987753
No 310
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.58 E-value=0.0018 Score=33.82 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=20.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
...+++.|++|+|||.+++.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999887654
No 311
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.58 E-value=0.0017 Score=36.28 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999987764
No 312
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.57 E-value=0.0021 Score=38.78 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.8
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+.+-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5789999999999999887643
No 313
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.57 E-value=0.002 Score=39.59 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=21.5
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
....++++|.+|+|||++..++...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988754
No 314
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.56 E-value=0.0014 Score=38.11 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998775
No 315
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.55 E-value=0.0024 Score=38.40 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.8
Q ss_pred ceeeeEEEECCCCCchHHHHHHhh
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
...+|++++|.+.+|||++++++.
T Consensus 30 ~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHHH
Confidence 347899999999999999999765
No 316
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.54 E-value=0.0021 Score=35.57 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.6
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.+++.|.+|+|||++...+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999887753
No 317
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.54 E-value=0.0023 Score=35.71 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.|.+|+|||++...+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999887753
No 318
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.54 E-value=0.0017 Score=36.84 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.2
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||++++.+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999998764
No 319
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.54 E-value=0.0015 Score=37.66 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|++|+|||+++..+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998865
No 320
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.54 E-value=0.0017 Score=38.21 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=18.4
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+.++|++|+||||++..+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3577899999999999997663
No 321
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.53 E-value=0.0018 Score=37.37 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=18.1
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+++.|++|+|||++++.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999998765
No 322
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.53 E-value=0.0009 Score=42.02 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.9
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCcCCC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDSYVD 35 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~~~~ 35 (57)
..++.++|..++|||||+.++....+..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~ 31 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVAS 31 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSB
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCcc
Confidence 4689999999999999999998765543
No 323
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.53 E-value=0.0017 Score=37.70 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||++++.+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999988765
No 324
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.53 E-value=0.0017 Score=37.40 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-++++|++|+|||+|+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3678999999999999987754
No 325
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0024 Score=38.58 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 5789999999999999887643
No 326
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.52 E-value=0.0027 Score=34.42 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=18.9
Q ss_pred eeeEEEECCCCCchHHHHHHhh
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~ 29 (57)
...|++.|.+|+|||++...+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999998775
No 327
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.52 E-value=0.0024 Score=38.58 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 5789999999999999887643
No 328
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.51 E-value=0.0024 Score=38.66 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=18.9
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 5789999999999999887653
No 329
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.51 E-value=0.0025 Score=38.87 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||+|++.+.+-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 5789999999999999887644
No 330
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.50 E-value=0.0026 Score=38.61 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=18.7
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+.+-.
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 5789999999999999877643
No 331
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.50 E-value=0.0019 Score=36.97 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=19.2
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||++++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4688999999999999988764
No 332
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.50 E-value=0.0027 Score=37.15 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhh
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
....+.+.|.+|+|||+++..+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999987654
No 333
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.50 E-value=0.0026 Score=40.87 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.4
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
....++.++|+.++|||||+.++...
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHh
Confidence 34678999999999999999999843
No 334
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.50 E-value=0.0022 Score=34.50 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||+++..+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999887754
No 335
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.50 E-value=0.002 Score=36.70 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999987764
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.50 E-value=0.0022 Score=34.41 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999987753
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.49 E-value=0.0024 Score=33.65 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999987754
No 338
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.49 E-value=0.0023 Score=40.27 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=22.6
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
....+++++|..++|||||+.++..
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHHHHh
Confidence 3478999999999999999999985
No 339
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.48 E-value=0.0021 Score=36.23 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+.++|++|+||||+++.+..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999997765
No 340
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.48 E-value=0.002 Score=38.29 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.3
Q ss_pred eeeEEEECCCCCchHHHHHHhh
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~ 29 (57)
-..+.++|++|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999886
No 341
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.47 E-value=0.0038 Score=33.52 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.2
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.|.+|+|||+++..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45688999999999999987653
No 342
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.46 E-value=0.0027 Score=35.88 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=18.2
Q ss_pred eeeE-EEECCCCCchHHHHHHhhc
Q 035406 8 LFKL-LLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki-~viG~~~vGKtsl~~~~~~ 30 (57)
+.|+ +++|++|+||+|.+.++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 4454 5789999999999887764
No 343
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.46 E-value=0.0021 Score=37.61 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+++.|++|+|||+++..+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999887753
No 344
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.0021 Score=35.54 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=17.5
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999887753
No 345
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.45 E-value=0.0022 Score=37.75 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=17.9
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|++|+||||++..+..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999987654
No 346
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.45 E-value=0.0029 Score=38.41 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=18.6
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+..-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 4689999999999998877643
No 347
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.44 E-value=0.0025 Score=38.15 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+||||+++.+..-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6789999999999999988764
No 348
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.43 E-value=0.0022 Score=38.16 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
--+.++|++|+||||++..+..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677999999999999987664
No 349
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.43 E-value=0.0022 Score=37.61 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||+|++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4578999999999999987754
No 350
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.00085 Score=36.59 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=17.9
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.++|++|+|||+++..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999987654
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.42 E-value=0.0025 Score=34.65 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..|++.|.+|+|||+++..+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999988764
No 352
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.41 E-value=0.0027 Score=33.94 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=18.6
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999887654
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.40 E-value=0.0033 Score=35.81 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..|++.|.+|+|||+++..+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999988764
No 354
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.40 E-value=0.0028 Score=36.29 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=18.2
Q ss_pred eeeEEEECCCCCchHHHHHHhh
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~ 29 (57)
...+++.|++|+|||+++..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999997544
No 355
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.40 E-value=0.0024 Score=36.24 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=19.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.|++|+|||+++..+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45788999999999999988765
No 356
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.40 E-value=0.0042 Score=34.78 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.3
Q ss_pred eeeeEEEECCCCCchHHHHHHhh
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
....+++.|..|+|||+++.++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 35678899999999999999987
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.39 E-value=0.0025 Score=34.04 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.4
Q ss_pred EEEECCCCCchHHHHHHhh
Q 035406 11 LLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~ 29 (57)
.+++|+.|+|||+++..+.
T Consensus 29 ~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999998764
No 358
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.38 E-value=0.0042 Score=35.53 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999987664
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.38 E-value=0.0031 Score=35.80 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
..+.++|++|+|||++++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999998776
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.38 E-value=0.0023 Score=35.03 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+.+.|.+|+|||+++..+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999987653
No 361
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.38 E-value=0.0022 Score=36.33 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=19.6
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...++++|.+|+|||++...+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988654
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.38 E-value=0.0021 Score=34.19 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=14.7
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
..+++.|.+|+|||++...+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568899999999999998875
No 363
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.37 E-value=0.0023 Score=35.79 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.9
Q ss_pred eeeEEEECCCCCchHHHHHHhhcC
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-.-+.+.|.+|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356789999999999999887653
No 364
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.37 E-value=0.0021 Score=38.04 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++-+..-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 4679999999999999877653
No 365
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.002 Score=37.55 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988764
No 366
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.35 E-value=0.0038 Score=34.29 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.5
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+.+.+.|.+|+|||+++..+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999998764
No 367
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.35 E-value=0.0025 Score=38.31 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=18.2
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.++++|++|+||||+++.+..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999987654
No 368
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.34 E-value=0.0032 Score=34.45 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-+.+.|.+|+|||+++.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999988664
No 369
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.34 E-value=0.0021 Score=38.62 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+.+-.
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEECCCCccHHHHHHHHHcCC
Confidence 5789999999999999887643
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.33 E-value=0.00079 Score=36.70 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=17.9
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|.+|+||||++..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999988753
No 371
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.33 E-value=0.0019 Score=41.14 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.8
Q ss_pred eEEEECCCCCchHHHHHHhhcCcCC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDSYV 34 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~~~ 34 (57)
.+.++|++|+||||+++.+.+-.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4889999999999999999886544
No 372
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.32 E-value=0.0023 Score=39.47 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.1
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...++++++|..++|||||+.+++.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 3568999999999999999999864
No 373
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.32 E-value=0.004 Score=37.07 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+-+.++|++|+||||++..+..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999987653
No 374
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.31 E-value=0.0024 Score=37.26 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.1
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+++.|++|+|||++++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987765
No 375
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.30 E-value=0.0025 Score=37.38 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||++++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998764
No 376
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.30 E-value=0.0058 Score=39.16 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.8
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
....+.++|.+++|||+|++++.+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 35778999999999999999998765
No 377
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.30 E-value=0.00061 Score=40.37 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++.+...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 5789999999999999998764
No 378
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.29 E-value=0.0028 Score=38.15 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.3
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.++++|++|+||||++..+..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999987664
No 379
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.29 E-value=0.002 Score=33.65 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.2
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..+++.|++|+|||.+++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999998877643
No 380
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.28 E-value=0.0038 Score=38.29 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.2
Q ss_pred ceeeeEEEECCCCCchHHHHHHhh
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
....|++++|...+||||+++++.
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 347999999999999999999755
No 381
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.28 E-value=0.0031 Score=36.68 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999998764
No 382
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.27 E-value=0.0034 Score=35.99 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||++...+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
No 383
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.27 E-value=0.0027 Score=37.10 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+.++|++|+||||++..+..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999987765
No 384
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.27 E-value=0.0027 Score=36.80 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=18.0
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-+++.|++|+|||++++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4567779999999999987664
No 385
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.26 E-value=0.0033 Score=38.74 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.6
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 3679999999999999987654
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.26 E-value=0.0045 Score=33.03 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.8
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|.+|+|||+++..+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999887764
No 387
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.26 E-value=0.0029 Score=36.16 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.1
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|++|+|||+|+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 367889999999999998775
No 388
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.25 E-value=0.0032 Score=40.69 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.6
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
....++.++|..++|||||+.+++.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999984
No 389
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.24 E-value=0.0029 Score=38.56 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=18.1
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.++|++|+|||++++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 357899999999999988775
No 390
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.24 E-value=0.0035 Score=37.21 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||++++.+..-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999877643
No 391
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.22 E-value=0.0047 Score=34.89 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=19.8
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.|.+.|.+|+|||++...+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999987754
No 392
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.22 E-value=0.0033 Score=36.45 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
--+++.|++|+|||++++.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 3588999999999999987764
No 393
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.003 Score=37.03 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||+++..+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988765
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.21 E-value=0.0037 Score=34.36 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.0
Q ss_pred eeEEEECCCCCchHHHHHHhh
Q 035406 9 FKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~ 29 (57)
..+++.|.+|+|||+++..+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999998764
No 395
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0035 Score=36.35 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.7
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+++.|++|+|||+++..+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999987654
No 396
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.20 E-value=0.0038 Score=35.25 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..+++.|++|+|||.+++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46889999999999999887654
No 397
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0036 Score=37.81 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.0
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|++|+||||++..+..
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 567999999999999987654
No 398
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.0035 Score=36.72 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.9
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+++.|++|+|||+++..+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999987765
No 399
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.15 E-value=0.0046 Score=34.15 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=17.6
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|++|+|||+|+.++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 357889999999999988753
No 400
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.14 E-value=0.002 Score=39.53 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++++|||||++.+....
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 46899999999999999998763
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.14 E-value=0.0021 Score=38.66 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+.+-.
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5789999999999999887643
No 402
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.13 E-value=0.0057 Score=32.25 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=18.6
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|.+|+|||++...+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999987754
No 403
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.11 E-value=0.0045 Score=36.74 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.5
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.|++|+|||++++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999987764
No 404
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.11 E-value=0.004 Score=39.32 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.0
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|.+|+||||++..+..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 577999999999999987664
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.11 E-value=0.0041 Score=35.74 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.++++|.+|+|||++.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999987754
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.10 E-value=0.0054 Score=35.06 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.3
Q ss_pred eeeEEEECCCCCchHHHHHHhh
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~ 29 (57)
.+.+.+.|++|+|||++...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999998765
No 407
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.09 E-value=0.0031 Score=37.06 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-++++|..|+||||+++.+...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 3568899999999999998864
No 408
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.09 E-value=0.0066 Score=34.83 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhh
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~ 29 (57)
..+++++.|.+|+|||+++.+..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999976544
No 409
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.09 E-value=0.0029 Score=36.41 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|++|+|||+++..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999988754
No 410
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.08 E-value=0.0057 Score=34.17 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=20.8
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhc
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+.....+.++|.+|+|||++...+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44556889999999999999887664
No 411
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.06 E-value=0.0066 Score=36.35 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=18.5
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-+++.|++|+|||++...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3467899999999999998764
No 412
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.06 E-value=0.0044 Score=36.40 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||++++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4688999999999999998775
No 413
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.06 E-value=0.0044 Score=38.07 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=18.3
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-++++|+.|+||||+++.+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999998765
No 414
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.05 E-value=0.0048 Score=37.51 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-++++|.+|+|||++++++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999998764
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0036 Score=38.82 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+|||||++-+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999976653
No 416
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.04 E-value=0.0045 Score=36.15 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.2
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||++++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999988764
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.04 E-value=0.0045 Score=37.07 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
++.++|++|+|||+|++.+....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999998887653
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.04 E-value=0.0063 Score=34.25 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.4
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.|.+|+|||+++..+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35688999999999999988764
No 419
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.03 E-value=0.0059 Score=34.63 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=19.9
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
..+++.|++|+|||+++..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999988754
No 420
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.02 E-value=0.0047 Score=37.11 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.++.++|.+++|||||++.+...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57899999999999999998864
No 421
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.02 E-value=0.0058 Score=35.81 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=19.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-.+++.|++|+|||.++..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999876654
No 422
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.02 E-value=0.0072 Score=38.11 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+||||+++-..+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999877543
No 423
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.01 E-value=0.0043 Score=40.88 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
....++.++|..++|||||+.+++..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999998853
No 424
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.00 E-value=0.008 Score=37.82 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999887643
No 425
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.99 E-value=0.006 Score=38.46 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+||||+++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5689999999999999987754
No 426
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.97 E-value=0.0053 Score=38.54 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.1
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.++++|++|+||||+++.+..-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999987754
No 427
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.96 E-value=0.0063 Score=35.17 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.6
Q ss_pred eeeEEEECCCCCchHHHHHHhh
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~ 29 (57)
.+.|.+.|.+|+|||+++..+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999998876
No 428
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.95 E-value=0.0078 Score=36.00 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=18.6
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..++++|++|+|||++...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999887654
No 429
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=95.93 E-value=0.0038 Score=37.60 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
++.++|..++|||||+.++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999998
No 430
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.93 E-value=0.006 Score=36.22 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.6
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.|++|+|||+++..+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988764
No 431
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.92 E-value=0.0069 Score=39.25 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=22.9
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhc
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.....++.++|..++|||||+.+++.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHH
Confidence 35578999999999999999999974
No 432
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.92 E-value=0.0059 Score=35.63 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.0
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999987764
No 433
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.91 E-value=0.0019 Score=36.44 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.1
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||+++..+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378899999999999987764
No 434
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.015 Score=35.41 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.7
Q ss_pred eeeEEEECCCCCchHHHHHHhhcCc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
..++.++|.++||||||++.+....
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998743
No 435
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.90 E-value=0.0068 Score=36.56 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-++++|++|+|||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988775
No 436
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.89 E-value=0.0055 Score=37.50 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.4
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||++++.+..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999987764
No 437
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.89 E-value=0.0032 Score=36.55 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||++++.+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 489999999999999988764
No 438
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.0065 Score=34.76 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+++.|++|+|||+++..+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3899999999999999877643
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.88 E-value=0.0057 Score=37.68 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
++.++|++|+|||+|++.+....
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 56789999999999998877643
No 440
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.87 E-value=0.007 Score=37.61 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+.+.|.+|+|||+++..+...
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEcCCCCCHHHHHHHHHhc
Confidence 4679999999999999988643
No 441
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.87 E-value=0.0067 Score=35.86 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=19.5
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999987764
No 442
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.87 E-value=0.0071 Score=35.83 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.3
Q ss_pred eeeEEEECCCCCchHHHHHHhh
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~ 29 (57)
...+.++|.+|+||||++..+.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4577899999999999999885
No 443
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.87 E-value=0.0083 Score=38.45 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.3
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhc
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+...++.++|..++|||||+.+++.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999975
No 444
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.86 E-value=0.0038 Score=36.29 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||++++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999987764
No 445
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.85 E-value=0.0061 Score=37.57 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||++++.+..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998764
No 446
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.85 E-value=0.0069 Score=38.29 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=18.9
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+||||+++-+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999987754
No 447
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.84 E-value=0.0063 Score=36.18 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||++++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999987764
No 448
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.84 E-value=0.007 Score=36.34 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.3
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|++|+|||++...+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 467899999999999998864
No 449
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.84 E-value=0.0062 Score=33.68 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.9
Q ss_pred EEEECCCCCchHHHHHHhhcC
Q 035406 11 LLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~ 31 (57)
++++|.+++|||+++.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 688999999999999998855
No 450
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.82 E-value=0.0066 Score=36.30 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=19.4
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|++|+|||++++.+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998764
No 451
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.79 E-value=0.0079 Score=39.67 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.4
Q ss_pred eeeeEEEECCCCCchHHHHHHhhcCcC
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFADDSY 33 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~~~~ 33 (57)
...+++++|+.++||||+++.+.+..+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 356999999999999999999999776
No 452
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.78 E-value=0.0074 Score=36.34 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.4
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.-+++.|++|+|||++...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3578999999999999987654
No 453
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.78 E-value=0.0066 Score=35.56 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=17.4
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
.+.++|.+|+|||+++..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57789999999999988765
No 454
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.77 E-value=0.0052 Score=36.94 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.7
Q ss_pred eeEEEECCCCCchHHHHHHhhcC
Q 035406 9 FKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.++.++|.+++|||++++.+...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 57899999999999999998864
No 455
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.76 E-value=0.0079 Score=31.80 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=15.9
Q ss_pred EEEECCCCCchHHHHHHhh
Q 035406 11 LLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~ 29 (57)
.+++|+.|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3678999999999988654
No 456
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.76 E-value=0.0083 Score=38.01 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+||||+++-...-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5689999999999999877654
No 457
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.01 Score=37.98 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+||||+++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 35789999999999999887643
No 458
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.75 E-value=0.0051 Score=36.30 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=17.3
Q ss_pred eEEE--ECCCCCchHHHHHHhhc
Q 035406 10 KLLL--IGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~v--iG~~~vGKtsl~~~~~~ 30 (57)
-+++ .|++|+|||+++..+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHH
Confidence 3555 69999999999998764
No 459
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.74 E-value=0.0076 Score=34.36 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.0
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 389999999999999987654
No 460
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.74 E-value=0.0077 Score=34.38 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=17.7
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+++.|++|+|||+++..+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 89999999999999887654
No 461
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.73 E-value=0.0066 Score=37.81 Aligned_cols=19 Identities=32% Similarity=0.579 Sum_probs=16.9
Q ss_pred eEEEECCCCCchHHHHHHh
Q 035406 10 KLLLIGDSSVGKSCLLLRF 28 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~ 28 (57)
-+.++|++|+|||+|+..+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 3678999999999999996
No 462
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.72 E-value=0.0069 Score=36.13 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=18.7
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+.++|++|+|||+|+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999988753
No 463
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.71 E-value=0.0072 Score=37.97 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.0
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.++++|++|+|||++++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999987653
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.71 E-value=0.0072 Score=38.11 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.3
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+||||+++....-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4679999999999999876643
No 465
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.70 E-value=0.0077 Score=37.75 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.4
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.++|++|+|||||+..+..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 356899999999999987654
No 466
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.68 E-value=0.008 Score=36.49 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.4
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+.++|++|+|||+++..+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999987663
No 467
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.67 E-value=0.0091 Score=35.23 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=17.9
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|++|+|||+++..+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 467999999999999987664
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.011 Score=37.24 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=18.7
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||||++.+.+-.
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999887643
No 469
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.66 E-value=0.0084 Score=38.72 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999887654
No 470
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.64 E-value=0.01 Score=32.02 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=17.9
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.+.|.+|+|||++...+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999887654
No 471
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.62 E-value=0.0084 Score=37.26 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
--+++.|++|+|||+++..+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999988764
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.60 E-value=0.013 Score=37.41 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|++|+|||||++.+.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 46789999999999999887643
No 473
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.59 E-value=0.0092 Score=33.81 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.5
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...|++.|..|+||||++..+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999987664
No 474
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.59 E-value=0.0096 Score=38.33 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.7
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHH
Confidence 4679999999999999887654
No 475
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.58 E-value=0.01 Score=34.78 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=17.7
Q ss_pred EEEECCCCCchHHHHHHhhc
Q 035406 11 LLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~ 30 (57)
+++.|.+|+|||+|+.++..
T Consensus 71 ~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 67889999999999998874
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.58 E-value=0.0091 Score=33.30 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+++.|++|+|||+++..+...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4789999999999999988753
No 477
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.57 E-value=0.0083 Score=36.63 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=17.4
Q ss_pred eEEEECCCCCchHHHHHHhh
Q 035406 10 KLLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~ 29 (57)
-+.++|++|+|||+|+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 35788999999999999775
No 478
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.56 E-value=0.01 Score=34.65 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.1
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
..+++.|++|+|||.+++.+..
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHH
Confidence 4688999999999999987765
No 479
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.54 E-value=0.0095 Score=36.47 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.3
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||+++..+..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988775
No 480
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.51 E-value=0.012 Score=40.73 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=22.9
Q ss_pred ceeeeEEEECCCCCchHHHHHHhhcC
Q 035406 6 DYLFKLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 6 ~~~~ki~viG~~~vGKtsl~~~~~~~ 31 (57)
...++++++|..++|||||+.++...
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 45689999999999999999998863
No 481
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.51 E-value=0.01 Score=37.55 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.+.++|++|+||||+++....-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999877653
No 482
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.51 E-value=0.013 Score=33.52 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=19.7
Q ss_pred cceeeeEEEECCCCCchHHHHHHhhc
Q 035406 5 YDYLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 5 ~~~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-...+++-++|.+|+|||+++.++..
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHHH
Confidence 34568899999999999999987754
No 483
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.47 E-value=0.013 Score=36.82 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.2
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||.+++.+..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 3689999999999999998765
No 484
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.43 E-value=0.012 Score=35.22 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.2
Q ss_pred EEEECCCCCchHHHHHHhh
Q 035406 11 LLLIGDSSVGKSCLLLRFA 29 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~ 29 (57)
.+++|+.|+||||++..+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999998755
No 485
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.43 E-value=0.0063 Score=35.48 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=15.7
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
+-+.+.|.+|+|||+++..+..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999987764
No 486
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.39 E-value=0.0065 Score=38.87 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=17.7
Q ss_pred eeeeEEEECCCCCchHHHHHHhhc
Q 035406 7 YLFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 7 ~~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
...++.++|..++|||||+.+++.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~ 26 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQ 26 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999975
No 487
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.38 E-value=0.016 Score=36.51 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEECCCCCchHHHHHHhhcCc
Q 035406 11 LLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 11 i~viG~~~vGKtsl~~~~~~~~ 32 (57)
+.++|++|+|||+|++.+.+-.
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999999887643
No 488
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.37 E-value=0.012 Score=37.33 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.3
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
.++++|++|+|||++++.+...
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHhcc
Confidence 5789999999999999988764
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.37 E-value=0.017 Score=36.91 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|+.|+|||+|++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999999999888643
No 490
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.37 E-value=0.012 Score=36.73 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|++|+|||++++.+..
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988764
No 491
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.35 E-value=0.013 Score=35.87 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=18.6
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+++.|++|+|||+|+..+...
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999987754
No 492
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.31 E-value=0.021 Score=35.93 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.5
Q ss_pred eEEEECCCCCchHHHHHHhhcCc
Q 035406 10 KLLLIGDSSVGKSCLLLRFADDS 32 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~~ 32 (57)
.+.++|+.|+|||+|++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999888653
No 493
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.013 Score=36.17 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
--+++.|++|+|||.++..+..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998764
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.29 E-value=0.012 Score=36.88 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.4
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|++|+|||++++.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999987764
No 495
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.29 E-value=0.021 Score=31.43 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.0
Q ss_pred eeeEEEECCCCCchHHHHHHhhc
Q 035406 8 LFKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 8 ~~ki~viG~~~vGKtsl~~~~~~ 30 (57)
.+.+.+.|..|+|||++...+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57788999999999999988764
No 496
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.25 E-value=0.014 Score=36.41 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=18.5
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+.++|.+|+|||+|+..+..
T Consensus 154 vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 154 FLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999885
No 497
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.24 E-value=0.013 Score=36.25 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=17.7
Q ss_pred eEEEECCCCCchHHHHHHhhc
Q 035406 10 KLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~ 30 (57)
-+++.|++|+|||++...+..
T Consensus 4 ~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHH
Confidence 467899999999999887653
No 498
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.18 E-value=0.014 Score=34.84 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.4
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+++.|++|+|||+++..+...
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 5789999999999999988864
No 499
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.01 Score=35.37 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=18.9
Q ss_pred eeEEEECCCCCchHHHHHHhhc
Q 035406 9 FKLLLIGDSSVGKSCLLLRFAD 30 (57)
Q Consensus 9 ~ki~viG~~~vGKtsl~~~~~~ 30 (57)
-.+++.|++|+|||++++....
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999987764
No 500
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.16 E-value=0.013 Score=36.49 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHhhcC
Q 035406 10 KLLLIGDSSVGKSCLLLRFADD 31 (57)
Q Consensus 10 ki~viG~~~vGKtsl~~~~~~~ 31 (57)
-+.++|++|+|||+|+..+...
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3678899999999999988753
Done!