Query 035410
Match_columns 65
No_of_seqs 114 out of 190
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 03:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c7n_A Rabex-5, GEF 1, RAB gua 34.7 17 0.00057 22.2 1.4 21 36-56 23-43 (74)
2 1xu2_R Tumor necrosis factor r 30.5 17 0.00059 20.4 0.9 20 10-29 20-39 (47)
3 2kzy_A ZNF216-A20, zfand5 prot 29.6 31 0.0011 20.2 1.9 18 39-56 23-40 (62)
4 2xtt_A Protease inhibitor SGPI 18.3 18 0.00062 18.9 -0.6 19 31-49 14-33 (36)
5 3oj3_I Tumor necrosis factor a 16.6 63 0.0022 18.2 1.4 19 39-57 29-47 (49)
6 1dec_A Decorsin; blood coagula 16.2 27 0.00094 18.8 -0.2 7 44-50 18-24 (39)
7 4b7j_A Neuraminidase; hydrolas 14.8 40 0.0014 26.5 0.4 16 38-54 269-284 (469)
8 2htq_A Neuraminidase; zanamivi 13.7 47 0.0016 25.6 0.4 17 38-55 187-203 (390)
9 1f8d_A Neuraminidase; hydrolas 12.9 31 0.0011 26.6 -0.8 17 38-55 188-204 (388)
10 1v0z_A Neuraminidase; glycosid 12.9 31 0.0011 26.6 -0.8 17 38-55 188-204 (389)
No 1
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=34.67 E-value=17 Score=22.18 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=15.4
Q ss_pred ccCCCCCCCcCCchhHHhhhh
Q 035410 36 CVPPGTAGNRELCGSCYTDMT 56 (65)
Q Consensus 36 CVP~GT~Gnk~~Cp~CY~~m~ 56 (65)
|.=.|+..+...|..||++..
T Consensus 23 CGFfGnpaT~nlCSkCyrd~~ 43 (74)
T 2c7n_A 23 CGYYGNPAWQGFCSKCWREEY 43 (74)
T ss_dssp SSSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCChhhcCccHHHHHHHH
Confidence 433555557899999999974
No 2
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=30.49 E-value=17 Score=20.44 Aligned_cols=20 Identities=40% Similarity=0.999 Sum_probs=16.2
Q ss_pred HhHHHhcCCCCChHHHHHhh
Q 035410 10 CKQRCSLHSRPNLCNRACGT 29 (65)
Q Consensus 10 C~~RCs~~~~~~~C~~~C~~ 29 (65)
|..||+.++.+..|-.||..
T Consensus 20 C~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 20 CQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp GGGTTTSSSCCGGGHHHHHC
T ss_pred hhcccCCCCCcchHHHHHhh
Confidence 78899966668889999863
No 3
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=29.58 E-value=31 Score=20.19 Aligned_cols=18 Identities=22% Similarity=0.676 Sum_probs=13.7
Q ss_pred CCCCCCcCCchhHHhhhh
Q 035410 39 PGTAGNRELCGSCYTDMT 56 (65)
Q Consensus 39 ~GT~Gnk~~Cp~CY~~m~ 56 (65)
.|+..+...|..||++..
T Consensus 23 fGnpaT~nlCSkCyr~~~ 40 (62)
T 2kzy_A 23 YGNPRTNGMCSVCYKEHL 40 (62)
T ss_dssp BCCTTTTSCCHHHHHHHH
T ss_pred cCChhhcCcCHHHHHHHH
Confidence 344457799999999973
No 4
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A
Probab=18.29 E-value=18 Score=18.92 Aligned_cols=19 Identities=32% Similarity=0.761 Sum_probs=13.4
Q ss_pred cCcccccCCCCCC-CcCCch
Q 035410 31 CVRCKCVPPGTAG-NRELCG 49 (65)
Q Consensus 31 C~~C~CVP~GT~G-nk~~Cp 49 (65)
|..|.|.+.|... ++..||
T Consensus 14 CNtC~C~~~G~W~CT~~~Cp 33 (36)
T 2xtt_A 14 CNTCRCGSDGVWACTRMGCP 33 (36)
T ss_dssp TEEEEECTTSCEEEECCCCC
T ss_pred CCccCCCCCCEEeeeCCcCC
Confidence 4678888888765 666664
No 5
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=16.57 E-value=63 Score=18.23 Aligned_cols=19 Identities=26% Similarity=0.684 Sum_probs=14.1
Q ss_pred CCCCCCcCCchhHHhhhhh
Q 035410 39 PGTAGNRELCGSCYTDMTT 57 (65)
Q Consensus 39 ~GT~Gnk~~Cp~CY~~m~t 57 (65)
-|+..+...|-.||+++..
T Consensus 29 fG~p~t~n~CSkCyre~~e 47 (49)
T 3oj3_I 29 FGTPENKGFCTLCFIEYRE 47 (49)
T ss_dssp BCBGGGTTBCHHHHHHHHH
T ss_pred ccCcccCCcchHHHHHHHH
Confidence 3444477899999999863
No 6
>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} SCOP: g.3.15.2
Probab=16.23 E-value=27 Score=18.78 Aligned_cols=7 Identities=29% Similarity=0.795 Sum_probs=5.6
Q ss_pred CcCCchh
Q 035410 44 NRELCGS 50 (65)
Q Consensus 44 nk~~Cp~ 50 (65)
||++|||
T Consensus 18 nkdecpp 24 (39)
T 1dec_A 18 NKDECPP 24 (39)
T ss_dssp SSSEECT
T ss_pred cCCCCCC
Confidence 7899974
No 7
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=14.84 E-value=40 Score=26.47 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.4
Q ss_pred CCCCCCCcCCchhHHhh
Q 035410 38 PPGTAGNRELCGSCYTD 54 (65)
Q Consensus 38 P~GT~Gnk~~Cp~CY~~ 54 (65)
.+|+..|.||| .||.+
T Consensus 269 l~gs~~HiEEC-SCY~~ 284 (469)
T 4b7j_A 269 MNAPNYHYEEC-SCYPD 284 (469)
T ss_dssp CCCTTCCCCSC-EEEEE
T ss_pred cCCCcccceee-eeccC
Confidence 57889999999 59965
No 8
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=13.66 E-value=47 Score=25.59 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=13.8
Q ss_pred CCCCCCCcCCchhHHhhh
Q 035410 38 PPGTAGNRELCGSCYTDM 55 (65)
Q Consensus 38 P~GT~Gnk~~Cp~CY~~m 55 (65)
.+|+.+|.||| .||-+.
T Consensus 187 l~gsa~HiEEC-SCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEEC-SCYPND 203 (390)
T ss_dssp ECCTTCCCCSC-CCCEET
T ss_pred cCCCcCceEee-eEecCC
Confidence 36888999999 599754
No 9
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=12.90 E-value=31 Score=26.55 Aligned_cols=17 Identities=47% Similarity=0.802 Sum_probs=13.8
Q ss_pred CCCCCCCcCCchhHHhhh
Q 035410 38 PPGTAGNRELCGSCYTDM 55 (65)
Q Consensus 38 P~GT~Gnk~~Cp~CY~~m 55 (65)
.+|+.+|.||| .||-+.
T Consensus 188 l~gs~~HiEEC-SCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEEC-SCYGER 204 (388)
T ss_dssp CCSSCCCCEEE-EEEEET
T ss_pred cCCCcCceEee-eEecCC
Confidence 46888999999 599765
No 10
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=12.85 E-value=31 Score=26.55 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=13.9
Q ss_pred CCCCCCCcCCchhHHhhh
Q 035410 38 PPGTAGNRELCGSCYTDM 55 (65)
Q Consensus 38 P~GT~Gnk~~Cp~CY~~m 55 (65)
.+|+.+|.||| .||-++
T Consensus 188 l~gs~~HiEEC-SCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEEC-SCYGAG 204 (389)
T ss_dssp CCSSCCCCEEE-EEEEET
T ss_pred cCCCccceEEe-eeccCC
Confidence 46888999999 599765
Done!