Query 035410
Match_columns 65
No_of_seqs 114 out of 190
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 03:53:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035410.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035410hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c7na1 g.39.1.15 (A:18-73) Ra 53.8 2.8 0.0002 23.1 1.5 18 40-57 7-27 (56)
2 d1xu2r_ g.24.1.2 (R:) Tumor ne 41.8 4.2 0.00031 20.6 0.9 19 10-28 17-35 (36)
3 d1jv2b5 g.3.11.6 (B:563-605) I 40.4 4.1 0.0003 21.1 0.7 19 31-49 21-40 (43)
4 d2h9ec1 g.22.1.1 (C:6-83) Anti 22.0 5.6 0.00041 21.7 -0.9 49 4-54 8-70 (78)
5 d1kloa3 g.3.11.2 (A:122-172) L 20.7 14 0.001 18.6 0.6 13 34-46 1-13 (51)
6 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 20.1 1.5 0.00011 23.3 -3.6 34 5-42 12-45 (60)
7 d2heyr3 g.24.1.1 (R:29-82) Tum 18.9 8 0.00058 20.1 -0.6 12 28-42 12-23 (54)
8 d2aepa1 b.68.1.1 (A:83-469) In 17.6 9 0.00066 27.7 -0.8 18 37-55 185-202 (387)
9 d1deca_ g.3.15.2 (A:) Decorsin 16.2 13 0.00094 18.8 -0.2 7 44-50 18-24 (39)
10 d1vyxa_ g.44.1.3 (A:) IE1B pro 15.2 19 0.0014 17.9 0.4 20 46-65 32-51 (60)
No 1
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.82 E-value=2.8 Score=23.05 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=14.2
Q ss_pred CCCC---CcCCchhHHhhhhh
Q 035410 40 GTAG---NRELCGSCYTDMTT 57 (65)
Q Consensus 40 GT~G---nk~~Cp~CY~~m~t 57 (65)
|.|| +...|-.||+++..
T Consensus 7 GFyG~~~~~g~CSkCyr~~~~ 27 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEYH 27 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHHH
Confidence 6777 56899999999853
No 2
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.85 E-value=4.2 Score=20.57 Aligned_cols=19 Identities=42% Similarity=1.041 Sum_probs=16.8
Q ss_pred HhHHHhcCCCCChHHHHHh
Q 035410 10 CKQRCSLHSRPNLCNRACG 28 (65)
Q Consensus 10 C~~RCs~~~~~~~C~~~C~ 28 (65)
|.-|||..+-+-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 7789998888999999986
No 3
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.39 E-value=4.1 Score=21.07 Aligned_cols=19 Identities=42% Similarity=1.151 Sum_probs=14.5
Q ss_pred cCcccccCCCCCCCc-CCch
Q 035410 31 CVRCKCVPPGTAGNR-ELCG 49 (65)
Q Consensus 31 C~~C~CVP~GT~Gnk-~~Cp 49 (65)
|++|.|--||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888844 6675
No 4
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=22.01 E-value=5.6 Score=21.65 Aligned_cols=49 Identities=22% Similarity=0.499 Sum_probs=20.0
Q ss_pred CcchH-HHhHHHhcCCCCChHHHHHhh------hcCcccccCCCCCCCc-------CCchhHHhh
Q 035410 4 IDCGG-LCKQRCSLHSRPNLCNRACGT------CCVRCKCVPPGTAGNR-------ELCGSCYTD 54 (65)
Q Consensus 4 ~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~GT~Gnk-------~~Cp~CY~~ 54 (65)
.+|++ .|..-|+.-.....|...++. |=.-|.| |+|++-|. ++|| |+-+
T Consensus 8 ~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~Cp-C~~~ 70 (78)
T d2h9ec1 8 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCE-LDNM 70 (78)
T ss_dssp C-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHG-GGGE
T ss_pred cccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCC-cccC
Confidence 35665 477777665555555555443 3355777 89998654 4575 8754
No 5
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.74 E-value=14 Score=18.59 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=9.5
Q ss_pred ccccCCCCCCCcC
Q 035410 34 CKCVPPGTAGNRE 46 (65)
Q Consensus 34 C~CVP~GT~Gnk~ 46 (65)
|+|-|.||.++..
T Consensus 1 C~C~~~Gs~~~~~ 13 (51)
T d1kloa3 1 CACNPYGTVQQQS 13 (51)
T ss_dssp CCCCTTTBGGGCC
T ss_pred CcCCCCcccCCCC
Confidence 6788888876543
No 6
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=20.15 E-value=1.5 Score=23.33 Aligned_cols=34 Identities=32% Similarity=0.946 Sum_probs=24.0
Q ss_pred cchHHHhHHHhcCCCCChHHHHHhhhcCcccccCCCCC
Q 035410 5 DCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTA 42 (65)
Q Consensus 5 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~ 42 (65)
.|+++|..-|+.-.....|...|- .-|.| |+|+.
T Consensus 12 ~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~v 45 (60)
T d1hx2a_ 12 TCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTV 45 (60)
T ss_dssp SSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCE
T ss_pred cccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEe
Confidence 577888888887666666765443 55777 78886
No 7
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.88 E-value=8 Score=20.09 Aligned_cols=12 Identities=42% Similarity=1.306 Sum_probs=7.8
Q ss_pred hhhcCcccccCCCCC
Q 035410 28 GTCCVRCKCVPPGTA 42 (65)
Q Consensus 28 ~~CC~~C~CVP~GT~ 42 (65)
|.||.+| |||||
T Consensus 12 g~CC~~C---~pG~~ 23 (54)
T d2heyr3 12 DRCCHEC---RPGNG 23 (54)
T ss_dssp TEEEECB---CTTEE
T ss_pred CeECCCC---CCCCe
Confidence 4566665 77876
No 8
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=17.58 E-value=9 Score=27.69 Aligned_cols=18 Identities=39% Similarity=0.711 Sum_probs=14.8
Q ss_pred cCCCCCCCcCCchhHHhhh
Q 035410 37 VPPGTAGNRELCGSCYTDM 55 (65)
Q Consensus 37 VP~GT~Gnk~~Cp~CY~~m 55 (65)
.++|+.++.||| .||.+.
T Consensus 185 ~l~g~~~HiEEC-SCYp~~ 202 (387)
T d2aepa1 185 PLSGSAQHVEEC-SCYPRY 202 (387)
T ss_dssp ECCSSCCCCEEE-EEEEET
T ss_pred ecCCCcCceEee-eecCCC
Confidence 367889999999 599775
No 9
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=16.23 E-value=13 Score=18.78 Aligned_cols=7 Identities=29% Similarity=0.795 Sum_probs=5.6
Q ss_pred CcCCchh
Q 035410 44 NRELCGS 50 (65)
Q Consensus 44 nk~~Cp~ 50 (65)
||++|||
T Consensus 18 nkdecpp 24 (39)
T d1deca_ 18 NKDECPP 24 (39)
T ss_dssp SSSEECT
T ss_pred cCCCCCC
Confidence 7899974
No 10
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=15.22 E-value=19 Score=17.87 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=14.7
Q ss_pred CCchhHHhhhhhcCCCCCCC
Q 035410 46 ELCGSCYTDMTTHGNRTKCP 65 (65)
Q Consensus 46 ~~Cp~CY~~m~t~~g~~KCP 65 (65)
..+-.|...|..+.+..+||
T Consensus 32 ~~H~~Cl~~W~~~~~~~~CP 51 (60)
T d1vyxa_ 32 NVHRSCLSTWLTISRNTACQ 51 (60)
T ss_dssp SCCHHHHHHHHHHHTCSBCT
T ss_pred EEcHHHHHHHHhhCCCCCCc
Confidence 34556888888777777787
Done!