Query 035414
Match_columns 57
No_of_seqs 13 out of 15
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 02:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13807 GNVR: G-rich domain o 83.2 0.82 1.8E-05 26.5 1.5 29 11-39 53-81 (82)
2 COG4068 Uncharacterized protei 66.9 4.9 0.00011 24.9 1.9 16 16-32 47-62 (64)
3 PF13536 EmrE: Multidrug resis 66.6 8 0.00017 22.8 2.7 20 10-30 84-103 (113)
4 PF14007 YtpI: YtpI-like prote 61.8 8.8 0.00019 24.1 2.4 19 11-29 54-72 (89)
5 PRK00159 putative septation in 58.4 9.2 0.0002 24.4 2.1 19 13-31 65-83 (87)
6 PF06781 UPF0233: Uncharacteri 55.2 12 0.00025 23.6 2.1 18 13-30 65-82 (87)
7 PRK11085 magnesium/nickel/coba 54.8 11 0.00023 27.5 2.1 30 11-42 286-315 (316)
8 PTZ00382 Variant-specific surf 54.6 5.5 0.00012 24.7 0.6 23 19-41 73-95 (96)
9 PRK02251 putative septation in 51.9 16 0.00034 23.3 2.3 18 13-30 65-82 (87)
10 PF12438 DUF3679: Protein of u 51.2 11 0.00025 22.3 1.5 17 17-33 2-18 (56)
11 PF01102 Glycophorin_A: Glycop 50.2 7.9 0.00017 25.5 0.8 29 16-44 68-96 (122)
12 PF00892 EamA: EamA-like trans 49.1 27 0.00058 19.1 2.7 20 10-30 104-123 (126)
13 PF07798 DUF1640: Protein of u 48.5 12 0.00025 24.6 1.4 20 14-33 154-173 (177)
14 PF02285 COX8: Cytochrome oxid 46.6 15 0.00033 20.8 1.5 27 11-37 9-35 (44)
15 PF11084 DUF2621: Protein of u 44.9 13 0.00029 25.8 1.3 35 17-51 9-45 (141)
16 PF08693 SKG6: Transmembrane a 44.1 22 0.00048 19.9 1.9 19 19-40 21-39 (40)
17 PF11282 DUF3082: Protein of u 42.0 21 0.00045 22.3 1.7 13 12-24 2-14 (82)
18 PF03669 UPF0139: Uncharacteri 41.4 6.7 0.00015 24.9 -0.5 17 25-41 37-53 (103)
19 PF04657 DUF606: Protein of un 40.8 22 0.00047 22.7 1.8 22 8-30 117-138 (138)
20 PF15103 G0-G1_switch_2: G0/G1 40.3 18 0.00039 23.9 1.3 20 17-36 27-46 (102)
21 PF15125 TMEM238: TMEM238 prot 40.1 19 0.0004 22.3 1.3 17 18-34 15-31 (65)
22 PF03345 DDOST_48kD: Oligosacc 39.3 45 0.00097 25.7 3.5 30 12-41 384-413 (423)
23 TIGR00950 2A78 Carboxylate/Ami 39.3 31 0.00067 21.9 2.3 19 9-28 241-259 (260)
24 PF01299 Lamp: Lysosome-associ 39.1 24 0.00053 24.7 1.9 28 15-42 273-300 (306)
25 PF13396 PLDc_N: Phospholipase 38.9 40 0.00087 17.4 2.3 26 15-40 21-46 (46)
26 CHL00177 ccs1 c-type cytochrom 38.8 23 0.00049 27.1 1.8 25 12-39 368-392 (426)
27 KOG0721 Molecular chaperone (D 38.7 14 0.00031 27.3 0.7 32 16-51 190-221 (230)
28 PF03988 DUF347: Repeat of Unk 38.5 22 0.00047 19.9 1.3 29 15-43 27-55 (55)
29 PF04403 PqiA: Paraquat-induci 38.4 19 0.00041 23.1 1.2 20 16-35 50-69 (160)
30 PRK02971 4-amino-4-deoxy-L-ara 38.3 41 0.00088 21.4 2.7 20 10-30 100-119 (129)
31 PF09838 DUF2065: Uncharacteri 36.9 33 0.00071 19.7 1.9 19 11-30 34-52 (57)
32 PF13127 DUF3955: Protein of u 36.9 23 0.00049 20.7 1.3 22 16-37 3-24 (63)
33 PRK15051 4-amino-4-deoxy-L-ara 36.6 47 0.001 20.3 2.7 20 10-30 87-106 (111)
34 PF13349 DUF4097: Domain of un 36.4 26 0.00057 21.0 1.5 14 17-30 4-17 (166)
35 PF10321 7TM_GPCR_Srt: Serpent 35.8 15 0.00033 26.5 0.5 35 13-48 29-68 (313)
36 PF11239 DUF3040: Protein of u 35.7 40 0.00087 19.7 2.2 19 12-30 37-55 (82)
37 TIGR00383 corA magnesium Mg(2+ 34.4 35 0.00075 23.2 2.0 28 13-42 290-317 (318)
38 PF04191 PEMT: Phospholipid me 34.2 36 0.00078 19.4 1.8 19 16-34 2-20 (106)
39 PF11540 Dynein_IC2: Cytoplasm 33.7 14 0.0003 20.1 -0.0 8 46-53 23-30 (33)
40 PF04143 Sulf_transp: Sulphur 32.9 58 0.0013 17.1 2.4 16 15-30 2-17 (43)
41 PRK11453 O-acetylserine/cystei 32.5 52 0.0011 22.2 2.6 20 10-30 265-284 (299)
42 PF15420 Abhydrolase_9_N: Alph 32.3 31 0.00068 23.9 1.6 23 3-25 77-99 (208)
43 PF15048 OSTbeta: Organic solu 32.1 44 0.00096 22.6 2.2 35 8-42 28-66 (125)
44 PF09685 Tic20: Tic20-like pro 31.3 13 0.00029 21.3 -0.3 29 23-51 15-43 (109)
45 PF10177 DUF2371: Uncharacteri 29.7 61 0.0013 21.9 2.6 28 10-37 36-64 (141)
46 cd00930 Cyt_c_Oxidase_VIII Cyt 29.6 61 0.0013 18.3 2.2 26 11-36 9-34 (43)
47 PF10779 XhlA: Haemolysin XhlA 29.4 65 0.0014 18.4 2.4 13 15-27 54-66 (71)
48 PLN02490 MPBQ/MSBQ methyltrans 29.1 37 0.0008 25.0 1.6 30 15-45 308-337 (340)
49 PF05216 UNC-50: UNC-50 family 29.0 6.2 0.00014 28.6 -2.4 22 33-54 26-47 (231)
50 PF14316 DUF4381: Domain of un 28.5 30 0.00066 21.8 0.9 15 2-16 1-15 (146)
51 PRK09541 emrE multidrug efflux 28.4 76 0.0017 19.8 2.7 20 10-30 81-100 (110)
52 PRK11272 putative DMT superfam 28.3 70 0.0015 21.5 2.7 21 10-31 263-283 (292)
53 TIGR02901 QoxD cytochrome aa3 27.9 44 0.00094 21.0 1.5 26 13-38 5-30 (94)
54 KOG3787 Glutamate/aspartate an 27.8 47 0.001 27.1 2.1 39 4-42 249-295 (507)
55 PF02832 Flavi_glycop_C: Flavi 27.2 31 0.00067 22.5 0.8 14 4-17 68-81 (97)
56 PF02417 Chromate_transp: Chro 27.0 81 0.0017 20.2 2.7 18 18-35 72-89 (169)
57 COG3125 CyoD Heme/copper-type 25.9 72 0.0016 21.1 2.4 25 13-37 16-40 (111)
58 PF11118 DUF2627: Protein of u 25.8 62 0.0013 20.4 1.9 34 10-43 33-69 (77)
59 TIGR01433 CyoA cytochrome o ub 25.8 79 0.0017 22.0 2.7 27 25-51 43-69 (226)
60 PF15102 TMEM154: TMEM154 prot 25.3 1E+02 0.0023 21.1 3.2 22 18-42 66-87 (146)
61 PLN03160 uncharacterized prote 24.9 1E+02 0.0022 21.2 3.0 28 15-42 40-67 (219)
62 TIGR02484 CitB CitB domain pro 24.8 26 0.00057 27.0 0.2 37 6-43 241-283 (372)
63 PF03839 Sec62: Translocation 24.8 88 0.0019 22.4 2.8 17 9-25 104-120 (224)
64 PRK10527 hypothetical protein; 24.3 59 0.0013 21.2 1.7 11 22-32 15-25 (125)
65 PRK11689 aromatic amino acid e 24.0 93 0.002 21.0 2.7 21 10-31 265-285 (295)
66 PF15099 PIRT: Phosphoinositid 23.7 59 0.0013 22.2 1.7 19 19-37 55-73 (129)
67 PRK09546 zntB zinc transporter 23.0 61 0.0013 22.6 1.7 27 14-42 297-323 (324)
68 TIGR03340 phn_DUF6 phosphonate 22.9 1E+02 0.0022 20.5 2.7 21 10-31 113-133 (281)
69 PRK10650 multidrug efflux syst 22.8 1.1E+02 0.0024 19.3 2.7 20 10-30 86-105 (109)
70 PF10883 DUF2681: Protein of u 22.7 39 0.00084 21.3 0.6 24 17-42 5-28 (87)
71 PRK10582 cytochrome o ubiquino 22.5 91 0.002 20.1 2.3 29 10-38 11-39 (109)
72 TIGR03017 EpsF chain length de 22.4 54 0.0012 23.3 1.4 26 13-38 393-418 (444)
73 PF07589 VPEP: PEP-CTERM motif 22.4 84 0.0018 15.4 1.7 6 12-17 3-8 (25)
74 PRK10999 malF maltose transpor 22.2 58 0.0013 25.6 1.6 23 14-36 67-90 (520)
75 COG3059 Predicted membrane pro 21.8 79 0.0017 22.8 2.1 20 14-33 88-107 (182)
76 TIGR02847 CyoD cytochrome o ub 21.8 90 0.002 19.6 2.2 26 13-38 3-28 (96)
77 PF14329 DUF4386: Domain of un 21.6 41 0.00089 21.8 0.6 28 17-45 135-162 (215)
78 PF10270 MMgT: Membrane magnes 21.5 82 0.0018 19.5 1.9 15 16-30 41-55 (106)
79 KOG4142 Phospholipid methyltra 21.4 59 0.0013 23.9 1.4 23 13-35 94-116 (208)
80 TIGR02976 phageshock_pspB phag 21.3 59 0.0013 19.8 1.2 28 18-45 7-34 (75)
81 PF09472 MtrF: Tetrahydrometha 20.9 73 0.0016 19.2 1.5 25 12-36 40-64 (64)
82 PF14387 DUF4418: Domain of un 20.8 1.1E+02 0.0024 19.8 2.5 18 13-30 101-118 (124)
83 PF06027 DUF914: Eukaryotic pr 20.7 1E+02 0.0022 22.8 2.6 26 10-39 283-308 (334)
84 PF04224 DUF417: Protein of un 20.6 96 0.0021 21.9 2.3 22 13-34 84-105 (175)
85 PRK10525 cytochrome o ubiquino 20.6 1.1E+02 0.0023 22.8 2.7 34 17-50 43-80 (315)
86 PF12669 P12: Virus attachment 20.5 36 0.00079 19.5 0.1 24 18-42 3-26 (58)
87 PF07423 DUF1510: Protein of u 20.4 97 0.0021 22.1 2.3 16 15-30 16-31 (217)
88 COG4016 Uncharacterized protei 20.4 24 0.00051 25.2 -0.8 13 3-15 57-69 (165)
89 PLN00411 nodulin MtN21 family 20.2 97 0.0021 22.6 2.3 20 10-30 306-325 (358)
90 PF06667 PspB: Phage shock pro 20.0 67 0.0014 19.6 1.3 28 21-49 10-37 (75)
91 PF14340 DUF4395: Domain of un 20.0 1.2E+02 0.0026 19.4 2.5 20 8-27 66-85 (131)
No 1
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=83.17 E-value=0.82 Score=26.46 Aligned_cols=29 Identities=34% Similarity=0.657 Sum_probs=24.1
Q ss_pred CCchHHHHHHHHHHHHHhhhheeeeehcc
Q 035414 11 PPSPLRYLMGAVIMMIGVVLPVGYMMFRN 39 (57)
Q Consensus 11 pP~p~rY~iGa~IMmvGVVLP~~YM~frn 39 (57)
|-+|-+-++=++-+++|.++++++.++|.
T Consensus 53 P~~P~~~lil~l~~~~Gl~lgi~~~~~re 81 (82)
T PF13807_consen 53 PVSPKRALILALGLFLGLILGIGLAFLRE 81 (82)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34777888878888999999999999874
No 2
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=66.90 E-value=4.9 Score=24.92 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhhe
Q 035414 16 RYLMGAVIMMIGVVLPV 32 (57)
Q Consensus 16 rY~iGa~IMmvGVVLP~ 32 (57)
-|+++|+ ..+|||||.
T Consensus 47 ~~li~aL-i~v~vvL~~ 62 (64)
T COG4068 47 MFLILAL-ILVMVVLPY 62 (64)
T ss_pred HHHHHHH-HHHHHhhcc
Confidence 4778877 788999985
No 3
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=66.58 E-value=8 Score=22.79 Aligned_cols=20 Identities=40% Similarity=0.758 Sum_probs=15.1
Q ss_pred cCCchHHHHHHHHHHHHHhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVL 30 (57)
|.+++.+ ++|+++.++||++
T Consensus 84 er~~~~~-~~a~~l~~~Gv~l 103 (113)
T PF13536_consen 84 ERLSPRR-WLAILLILIGVIL 103 (113)
T ss_pred CCCCHHH-HHHHHHHHHHHHH
Confidence 5556655 5599999999986
No 4
>PF14007 YtpI: YtpI-like protein
Probab=61.85 E-value=8.8 Score=24.13 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=17.0
Q ss_pred CCchHHHHHHHHHHHHHhh
Q 035414 11 PPSPLRYLMGAVIMMIGVV 29 (57)
Q Consensus 11 pP~p~rY~iGa~IMmvGVV 29 (57)
-+|.+++++|++.+.+|+.
T Consensus 54 ~~st~~~iV~~ifl~lG~~ 72 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLF 72 (89)
T ss_pred cccHHHHHHHHHHHHHhHH
Confidence 4789999999999999975
No 5
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=58.40 E-value=9.2 Score=24.35 Aligned_cols=19 Identities=26% Similarity=0.758 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHHhhhh
Q 035414 13 SPLRYLMGAVIMMIGVVLP 31 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVLP 31 (57)
+.-.|++|+.+|++|..+=
T Consensus 65 G~WN~~IGFg~~i~G~lmt 83 (87)
T PRK00159 65 GPWNYAIGFALMITGLLMT 83 (87)
T ss_pred CchhHHHHHHHHHHHHHHh
Confidence 5568999999999998753
No 6
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=55.15 E-value=12 Score=23.62 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHhhh
Q 035414 13 SPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVL 30 (57)
+.-.+++|+.+|++|..+
T Consensus 65 G~WN~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 65 GNWNLAIGFGLMIVGFLM 82 (87)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 345789999999999765
No 7
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=54.79 E-value=11 Score=27.53 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHHHHhhhheeeeehccccC
Q 035414 11 PPSPLRYLMGAVIMMIGVVLPVGYMMFRNKRV 42 (57)
Q Consensus 11 pP~p~rY~iGa~IMmvGVVLP~~YM~frnKrv 42 (57)
...|..|.+..++|++..++|+. +||+|+.
T Consensus 286 ~~~~~g~~~~l~~~~~~~~~~~~--~f~rk~W 315 (316)
T PRK11085 286 LKWSFGYPGAIILMILAGLAPYL--YFKRKNW 315 (316)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHH--HHHHccc
Confidence 34678899888888888888754 5787763
No 8
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=54.58 E-value=5.5 Score=24.66 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhheeeeehcccc
Q 035414 19 MGAVIMMIGVVLPVGYMMFRNKR 41 (57)
Q Consensus 19 iGa~IMmvGVVLP~~YM~frnKr 41 (57)
+|+++.+.++|.=+.++++++||
T Consensus 73 vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 73 VAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred eehhhHHHHHHHHHhheeEEeec
Confidence 34444444444445566665555
No 9
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=51.91 E-value=16 Score=23.28 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHHhhh
Q 035414 13 SPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVL 30 (57)
++-.|++|+.+|++|..+
T Consensus 65 G~WN~~IGfg~~~~G~~m 82 (87)
T PRK02251 65 GAWNLVIGFGLIMAGFGM 82 (87)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 456789999999999765
No 10
>PF12438 DUF3679: Protein of unknown function (DUF3679) ; InterPro: IPR020534 This entry contains proteins with no known function.
Probab=51.19 E-value=11 Score=22.33 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhhee
Q 035414 17 YLMGAVIMMIGVVLPVG 33 (57)
Q Consensus 17 Y~iGa~IMmvGVVLP~~ 33 (57)
.+..+++|++||++=+.
T Consensus 2 ~~~~~~il~~gVl~Gmq 18 (56)
T PF12438_consen 2 CILLVIILFFGVLLGMQ 18 (56)
T ss_pred chHHHHHHHHHHHHhHH
Confidence 46788999999998654
No 11
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.16 E-value=7.9 Score=25.46 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhheeeeehccccCCC
Q 035414 16 RYLMGAVIMMIGVVLPVGYMMFRNKRVPS 44 (57)
Q Consensus 16 rY~iGa~IMmvGVVLP~~YM~frnKrv~s 44 (57)
--++|++.=++|.+|=+.|.+-|++|-.+
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34566666778888888888887776543
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=49.06 E-value=27 Score=19.05 Aligned_cols=20 Identities=45% Similarity=0.783 Sum_probs=14.9
Q ss_pred cCCchHHHHHHHHHHHHHhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVL 30 (57)
|+|++. -++|.++.++|+++
T Consensus 104 e~~~~~-~~~g~~l~~~g~~l 123 (126)
T PF00892_consen 104 ERPSWR-QIIGIILIIIGVVL 123 (126)
T ss_pred CCCCHH-HHHHHHHHHHHHHH
Confidence 667654 46788888999875
No 13
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.53 E-value=12 Score=24.62 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHhhhhee
Q 035414 14 PLRYLMGAVIMMIGVVLPVG 33 (57)
Q Consensus 14 p~rY~iGa~IMmvGVVLP~~ 33 (57)
-+||++|.++.+++++|-+.
T Consensus 154 ~lr~~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 154 TLRWLVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46999999999888888654
No 14
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=46.65 E-value=15 Score=20.84 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=21.9
Q ss_pred CCchHHHHHHHHHHHHHhhhheeeeeh
Q 035414 11 PPSPLRYLMGAVIMMIGVVLPVGYMMF 37 (57)
Q Consensus 11 pP~p~rY~iGa~IMmvGVVLP~~YM~f 37 (57)
|=|+..=++|..++.++..+|-||.+-
T Consensus 9 ~~s~~e~aigltv~f~~~L~PagWVLs 35 (44)
T PF02285_consen 9 PLSPAEQAIGLTVCFVTFLGPAGWVLS 35 (44)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 458889999999999999999998763
No 15
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=44.87 E-value=13 Score=25.83 Aligned_cols=35 Identities=31% Similarity=0.614 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhheeeeehcc--ccCCCCcccccc
Q 035414 17 YLMGAVIMMIGVVLPVGYMMFRN--KRVPSTSSYSKQ 51 (57)
Q Consensus 17 Y~iGa~IMmvGVVLP~~YM~frn--Krv~sss~yskq 51 (57)
.|+.-.+.|+|...==||.|||. ||.|+...-|+-
T Consensus 9 fI~~W~~vli~l~~IGGfFMFRKFLK~lPKeDGkS~L 45 (141)
T PF11084_consen 9 FILFWVVVLIGLMAIGGFFMFRKFLKRLPKEDGKSIL 45 (141)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCcccCcccc
Confidence 35556677888888889999997 888888666653
No 16
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=44.06 E-value=22 Score=19.86 Aligned_cols=19 Identities=32% Similarity=0.913 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhheeeeehccc
Q 035414 19 MGAVIMMIGVVLPVGYMMFRNK 40 (57)
Q Consensus 19 iGa~IMmvGVVLP~~YM~frnK 40 (57)
+|+++..+|++| |..+|++
T Consensus 21 V~vI~~vl~~~l---~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFL---FFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHh---heEEecc
Confidence 355566666554 3344544
No 17
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=41.97 E-value=21 Score=22.31 Aligned_cols=13 Identities=62% Similarity=1.066 Sum_probs=11.4
Q ss_pred CchHHHHHHHHHH
Q 035414 12 PSPLRYLMGAVIM 24 (57)
Q Consensus 12 P~p~rY~iGa~IM 24 (57)
|+|+|.+.|+++-
T Consensus 2 ~~Pl~~l~Ga~~a 14 (82)
T PF11282_consen 2 PTPLRCLSGALIA 14 (82)
T ss_pred CChHHHHHHHHHH
Confidence 8999999999863
No 18
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=41.36 E-value=6.7 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.687 Sum_probs=11.5
Q ss_pred HHHhhhheeeeehcccc
Q 035414 25 MIGVVLPVGYMMFRNKR 41 (57)
Q Consensus 25 mvGVVLP~~YM~frnKr 41 (57)
++|.+++++=+|+|+|=
T Consensus 37 ~L~~~~~m~gl~mr~K~ 53 (103)
T PF03669_consen 37 FLGMIFSMAGLMMRNKW 53 (103)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 45666666667778874
No 19
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=40.84 E-value=22 Score=22.72 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=16.0
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
|..|-++.| ++|+++|++|++|
T Consensus 117 ~~~~~~~~r-~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 117 PKRPFSLRR-ILGLALMIAGVIL 138 (138)
T ss_pred CCCCCCHHH-HHHHHHHHHHHhC
Confidence 344555555 6799999999986
No 20
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=40.34 E-value=18 Score=23.87 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhhheeeee
Q 035414 17 YLMGAVIMMIGVVLPVGYMM 36 (57)
Q Consensus 17 Y~iGa~IMmvGVVLP~~YM~ 36 (57)
|++|.++-.+|||+=+.=++
T Consensus 27 YvLGSvLA~~Gvv~GLVEtV 46 (102)
T PF15103_consen 27 YVLGSVLAFFGVVIGLVETV 46 (102)
T ss_pred ehhhhHHHHHHHHHHHHHHH
Confidence 99999999999998765443
No 21
>PF15125 TMEM238: TMEM238 protein family
Probab=40.10 E-value=19 Score=22.26 Aligned_cols=17 Identities=24% Similarity=0.841 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhheee
Q 035414 18 LMGAVIMMIGVVLPVGY 34 (57)
Q Consensus 18 ~iGa~IMmvGVVLP~~Y 34 (57)
+.|.+.+++||.-|+-|
T Consensus 15 ~vGl~~Ll~GiFa~l~f 31 (65)
T PF15125_consen 15 VVGLVMLLTGIFAPLDF 31 (65)
T ss_pred HhhHHHHHHHHhcchhH
Confidence 57999999999999854
No 22
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=39.29 E-value=45 Score=25.74 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHHHHHhhhheeeeehcccc
Q 035414 12 PSPLRYLMGAVIMMIGVVLPVGYMMFRNKR 41 (57)
Q Consensus 12 P~p~rY~iGa~IMmvGVVLP~~YM~frnKr 41 (57)
++.--|..|+..||+|.++=++.+++-...
T Consensus 384 ~~A~PYyas~~s~m~gf~lF~~~fL~~~~~ 413 (423)
T PF03345_consen 384 TNAYPYYASAFSMMIGFFLFVFVFLYHKPV 413 (423)
T ss_pred ccccHHHHHHHHHHHHHHhheeeEEEecCc
Confidence 567789999999999999998888887655
No 23
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=39.26 E-value=31 Score=21.94 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.7
Q ss_pred ecCCchHHHHHHHHHHHHHh
Q 035414 9 VEPPSPLRYLMGAVIMMIGV 28 (57)
Q Consensus 9 vepP~p~rY~iGa~IMmvGV 28 (57)
=|+|++.+ ++|++++++|+
T Consensus 241 ~E~~~~~~-~~G~~li~~g~ 259 (260)
T TIGR00950 241 GETLSLPQ-LIGGALIIAAV 259 (260)
T ss_pred CCCCCHHH-HHHHHHHHHhc
Confidence 37888876 67888888886
No 24
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=39.12 E-value=24 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhhheeeeehccccC
Q 035414 15 LRYLMGAVIMMIGVVLPVGYMMFRNKRV 42 (57)
Q Consensus 15 ~rY~iGa~IMmvGVVLP~~YM~frnKrv 42 (57)
+--++|+++-.+=++.=++|.+.|+|+-
T Consensus 273 vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 3446787765444444468999887753
No 25
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=38.92 E-value=40 Score=17.36 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhheeeeehccc
Q 035414 15 LRYLMGAVIMMIGVVLPVGYMMFRNK 40 (57)
Q Consensus 15 ~rY~iGa~IMmvGVVLP~~YM~frnK 40 (57)
.+.+--++++.+.++=|+.|.++++|
T Consensus 21 ~k~~W~~~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 21 SKILWLIVILFFPIIGPILYLIFGRK 46 (46)
T ss_pred hhhHHHHHHHHHHHHHHhheEEEeCC
Confidence 34455567777888889999999876
No 26
>CHL00177 ccs1 c-type cytochrome biogenensis protein; Validated
Probab=38.76 E-value=23 Score=27.05 Aligned_cols=25 Identities=24% Similarity=0.737 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHHhhhheeeeehcc
Q 035414 12 PSPLRYLMGAVIMMIGVVLPVGYMMFRN 39 (57)
Q Consensus 12 P~p~rY~iGa~IMmvGVVLP~~YM~frn 39 (57)
--|+-| +|+++||+|+.+ .||-.|+
T Consensus 368 G~~~vy-~G~~ll~lG~~~--sy~~~~~ 392 (426)
T CHL00177 368 GIPIIY-VGFFLLMISILI--SYISYSQ 392 (426)
T ss_pred CCeehH-HHHHHHHHHHhe--eeecceE
Confidence 335555 699999999999 5876643
No 27
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=38.70 E-value=14 Score=27.27 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhheeeeehccccCCCCcccccc
Q 035414 16 RYLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQ 51 (57)
Q Consensus 16 rY~iGa~IMmvGVVLP~~YM~frnKrv~sss~yskq 51 (57)
.+++|+--..+||+|| ++-+++--.|++|++.
T Consensus 190 ~~vl~~y~l~f~vilp----~~v~~ww~rs~~yt~d 221 (230)
T KOG0721|consen 190 PGVLGFYGLVFGVILP----VFVGRWWYRSRGYTGD 221 (230)
T ss_pred chHHHHHHHHHHhHhH----HHHHHHHHhhhcccCC
Confidence 3577888889999999 4556666778888763
No 28
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=38.54 E-value=22 Score=19.90 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhhheeeeehccccCC
Q 035414 15 LRYLMGAVIMMIGVVLPVGYMMFRNKRVP 43 (57)
Q Consensus 15 ~rY~iGa~IMmvGVVLP~~YM~frnKrv~ 43 (57)
+-|..+.+++.+..+..+.+..+.+|..|
T Consensus 27 lg~~~~~~~~~~~l~~~~~~~~~~~~~~p 55 (55)
T PF03988_consen 27 LGYLISTLIFAALLAVVLALWYRSKRYRP 55 (55)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35778888888888887766665555443
No 29
>PF04403 PqiA: Paraquat-inducible protein A; InterPro: IPR007498 Paraquat is a superoxide radical-generating agent. The promoter for the pqiA gene is also inducible by other known superoxide generators []. This is predicted to be a family of integral membrane proteins, possibly located in the inner membrane. This family is related to NADH dehydrogenase subunit 2 (IPR001750 from INTERPRO).
Probab=38.43 E-value=19 Score=23.11 Aligned_cols=20 Identities=20% Similarity=0.610 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhhheeee
Q 035414 16 RYLMGAVIMMIGVVLPVGYM 35 (57)
Q Consensus 16 rY~iGa~IMmvGVVLP~~YM 35 (57)
.|.+|+++.+..++.|..++
T Consensus 50 ~~~la~lv~~~svv~P~lkl 69 (160)
T PF04403_consen 50 YYFLAVLVFLFSVVFPLLKL 69 (160)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 48899999999999998764
No 30
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=38.33 E-value=41 Score=21.43 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=15.5
Q ss_pred cCCchHHHHHHHHHHHHHhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVL 30 (57)
|+.++.+ ++|.++.++||++
T Consensus 100 E~ls~~~-~iGi~lIi~GV~l 119 (129)
T PRK02971 100 ETFSLKK-TLGVACIMLGVWL 119 (129)
T ss_pred CCCCHHH-HHHHHHHHHHHHH
Confidence 6666666 4688888999988
No 31
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=36.94 E-value=33 Score=19.71 Aligned_cols=19 Identities=53% Similarity=0.845 Sum_probs=14.4
Q ss_pred CCchHHHHHHHHHHHHHhhh
Q 035414 11 PPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 11 pP~p~rY~iGa~IMmvGVVL 30 (57)
||+.+| .+|.+.|.+|+++
T Consensus 34 p~~~lR-~~Gl~~~~~Gl~l 52 (57)
T PF09838_consen 34 PDRQLR-RIGLVSMVIGLVL 52 (57)
T ss_pred CHHHHH-HHHHHHHHHHHHH
Confidence 444444 5899999999986
No 32
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=36.86 E-value=23 Score=20.75 Aligned_cols=22 Identities=18% Similarity=0.625 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhheeeeeh
Q 035414 16 RYLMGAVIMMIGVVLPVGYMMF 37 (57)
Q Consensus 16 rY~iGa~IMmvGVVLP~~YM~f 37 (57)
.|.+|.+.+++|++....+...
T Consensus 3 ~~~l~~~~~llg~~~l~i~~~~ 24 (63)
T PF13127_consen 3 KYILSLILLLLGVVCLFIFNII 24 (63)
T ss_pred chHHHHHHHHHHHHHHHHHhcc
Confidence 4889999999999999887654
No 33
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=36.55 E-value=47 Score=20.31 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=14.7
Q ss_pred cCCchHHHHHHHHHHHHHhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVL 30 (57)
|++++.+ ++|.++.++||++
T Consensus 87 E~ls~~~-~~Gi~lii~Gv~~ 106 (111)
T PRK15051 87 EPVSPRH-WCGVAFIIGGIVI 106 (111)
T ss_pred CCCCHHH-HHHHHHHHHHHHH
Confidence 5555544 6799999999875
No 34
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=36.35 E-value=26 Score=21.04 Aligned_cols=14 Identities=29% Similarity=0.987 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhh
Q 035414 17 YLMGAVIMMIGVVL 30 (57)
Q Consensus 17 Y~iGa~IMmvGVVL 30 (57)
+++|++++++|.+|
T Consensus 4 ~~i~~~l~viG~il 17 (166)
T PF13349_consen 4 LIIGLILIVIGIIL 17 (166)
T ss_pred ehHHHHHHHHHHHH
Confidence 45777777777775
No 35
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=35.78 E-value=15 Score=26.51 Aligned_cols=35 Identities=23% Similarity=0.541 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHhh-----hheeeeehccccCCCCccc
Q 035414 13 SPLRYLMGAVIMMIGVV-----LPVGYMMFRNKRVPSTSSY 48 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVV-----LP~~YM~frnKrv~sss~y 48 (57)
+--|.++|+..+..|++ +|..+.|+|.|.. +++.|
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~-k~~~y 68 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLF-KMSCY 68 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccc-cCcHH
Confidence 55678899999999988 5666778876544 45555
No 36
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=35.72 E-value=40 Score=19.70 Aligned_cols=19 Identities=32% Similarity=0.777 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHHHHHhhh
Q 035414 12 PSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 12 P~p~rY~iGa~IMmvGVVL 30 (57)
|++-+.+.|.+...+|+++
T Consensus 37 ~~~r~~~~~~~~~v~gl~l 55 (82)
T PF11239_consen 37 PSRRRRVLGVLLVVVGLAL 55 (82)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 4444555555555555544
No 37
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=34.45 E-value=35 Score=23.19 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHhhhheeeeehccccC
Q 035414 13 SPLRYLMGAVIMMIGVVLPVGYMMFRNKRV 42 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVLP~~YM~frnKrv 42 (57)
.+..|.+-.++|++=+++ .|.+||+|+-
T Consensus 290 ~~~gy~~~l~~m~~i~~~--~~~~fkrk~W 317 (318)
T TIGR00383 290 WKYGYPAVLIVMAVIALG--PLIYFRRKGW 317 (318)
T ss_pred chhHHHHHHHHHHHHHHH--HHHHHHHcCC
Confidence 456777777777665555 4556888863
No 38
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=34.18 E-value=36 Score=19.38 Aligned_cols=19 Identities=21% Similarity=0.700 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhheee
Q 035414 16 RYLMGAVIMMIGVVLPVGY 34 (57)
Q Consensus 16 rY~iGa~IMmvGVVLP~~Y 34 (57)
+.++|.+++++|.++-+.-
T Consensus 2 ~~~~G~~l~~~g~~l~~~~ 20 (106)
T PF04191_consen 2 RFVLGLLLILAGIALAIWA 20 (106)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 6789999999999887643
No 39
>PF11540 Dynein_IC2: Cytoplasmic dynein 1 intermediate chain 2; PDB: 2PG1_L 3FM7_D 2P2T_C.
Probab=33.67 E-value=14 Score=20.14 Aligned_cols=8 Identities=63% Similarity=0.804 Sum_probs=5.9
Q ss_pred cccccccc
Q 035414 46 SSYSKQTN 53 (57)
Q Consensus 46 s~yskqt~ 53 (57)
.+|||||.
T Consensus 23 v~YsK~TQ 30 (33)
T PF11540_consen 23 VSYSKETQ 30 (33)
T ss_dssp -EEEEEEE
T ss_pred eeEecccc
Confidence 57999985
No 40
>PF04143 Sulf_transp: Sulphur transport; InterPro: IPR007272 This entry includes YeeE and YedE from Escherichia coli. These proteins are integral membrane proteins of unknown function. Many of these proteins contain two homologous regions that are represented by this entry. This region contains several conserved glycines and an invariant cysteine that is probably an important functional residue.
Probab=32.91 E-value=58 Score=17.07 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 035414 15 LRYLMGAVIMMIGVVL 30 (57)
Q Consensus 15 ~rY~iGa~IMmvGVVL 30 (57)
++.++|.++|-+|-+|
T Consensus 2 ~~~~iGg~lfG~G~~l 17 (43)
T PF04143_consen 2 LAAIIGGFLFGFGARL 17 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678999999998776
No 41
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=32.52 E-value=52 Score=22.22 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=15.5
Q ss_pred cCCchHHHHHHHHHHHHHhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVL 30 (57)
|+|++.. ++|++++++|+.+
T Consensus 265 E~~~~~~-~iG~~lI~~gv~l 284 (299)
T PRK11453 265 ERLTGLQ-FLGAVLIMAGLYI 284 (299)
T ss_pred CCccHHH-HHHHHHHHHHHHH
Confidence 6677766 6788888899975
No 42
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=32.32 E-value=31 Score=23.87 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=19.2
Q ss_pred ceeeeEecCCchHHHHHHHHHHH
Q 035414 3 FRKIVEVEPPSPLRYLMGAVIMM 25 (57)
Q Consensus 3 ~r~~lEvepP~p~rY~iGa~IMm 25 (57)
.|.+++.||+++..|+.++++-.
T Consensus 77 ~r~lmg~~~~~~~~~~~~~~va~ 99 (208)
T PF15420_consen 77 LRALMGMPPIGPAHYLLVVLVAL 99 (208)
T ss_pred HHHHhCCCCCChhHHHHHHHHHH
Confidence 57899999999999998776653
No 43
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=32.08 E-value=44 Score=22.64 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=21.7
Q ss_pred EecCCchHHHHH---HHHHHHHHhhhh-eeeeehccccC
Q 035414 8 EVEPPSPLRYLM---GAVIMMIGVVLP-VGYMMFRNKRV 42 (57)
Q Consensus 8 EvepP~p~rY~i---Ga~IMmvGVVLP-~~YM~frnKrv 42 (57)
-+|-|+|-.|.| .++++++|++|= .+-+-=||+|.
T Consensus 28 R~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~ 66 (125)
T PF15048_consen 28 RVEDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKM 66 (125)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccccc
Confidence 378899999965 456777777652 23333344443
No 44
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=31.30 E-value=13 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=19.5
Q ss_pred HHHHHhhhheeeeehccccCCCCcccccc
Q 035414 23 IMMIGVVLPVGYMMFRNKRVPSTSSYSKQ 51 (57)
Q Consensus 23 IMmvGVVLP~~YM~frnKrv~sss~yskq 51 (57)
...+|.+.|+...+.++|+.+.....+||
T Consensus 15 ~~~~~~i~pli~~~~~k~~~~~vr~ha~q 43 (109)
T PF09685_consen 15 SPFLGFIGPLIVWIVKKDKSPFVRFHAKQ 43 (109)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45788999999988888873333333444
No 45
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=29.73 E-value=61 Score=21.95 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=21.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhhe-eeeeh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVLPV-GYMMF 37 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVLP~-~YM~f 37 (57)
--||=+--+.|++|+++|+...+ ||+=-
T Consensus 36 ~s~Sg~~l~lG~lvllvGiaMAv~GYwp~ 64 (141)
T PF10177_consen 36 CSPSGLFLLLGILVLLVGIAMAVLGYWPK 64 (141)
T ss_pred ecHHHHHHHHHHHHHHHhhHhheeecccc
Confidence 34566677899999999999886 56433
No 46
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=29.56 E-value=61 Score=18.28 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=23.0
Q ss_pred CCchHHHHHHHHHHHHHhhhheeeee
Q 035414 11 PPSPLRYLMGAVIMMIGVVLPVGYMM 36 (57)
Q Consensus 11 pP~p~rY~iGa~IMmvGVVLP~~YM~ 36 (57)
|=|+..-++|..++.++..+|-||.+
T Consensus 9 ~~s~~E~aigl~~~f~~~L~p~gWVL 34 (43)
T cd00930 9 PLSAAESAIGLSVFFTTFLLPAGWVL 34 (43)
T ss_pred cCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45888999999999999999999865
No 47
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.44 E-value=65 Score=18.43 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH
Q 035414 15 LRYLMGAVIMMIG 27 (57)
Q Consensus 15 ~rY~iGa~IMmvG 27 (57)
.|.++|++|+-++
T Consensus 54 ~r~iiGaiI~~i~ 66 (71)
T PF10779_consen 54 WRTIIGAIITAII 66 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 5788899888654
No 48
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=29.07 E-value=37 Score=25.04 Aligned_cols=30 Identities=30% Similarity=0.668 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhheeeeehccccCCCC
Q 035414 15 LRYLMGAVIMMIGVVLPVGYMMFRNKRVPST 45 (57)
Q Consensus 15 ~rY~iGa~IMmvGVVLP~~YM~frnKrv~ss 45 (57)
.|+++|++--.-=|.+| .||.++++-+|+.
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 337 (340)
T PLN02490 308 LRFILGTIAATYYVLVP-IYMWLKDQIVPKG 337 (340)
T ss_pred HHHHhhhHhhhhHhhhh-HHHHHhcccccCC
Confidence 57788887666666666 5999999988874
No 49
>PF05216 UNC-50: UNC-50 family; InterPro: IPR007881 This family contains several eukaryotic transmembrane proteins which are related to the Caenorhabditis elegans protein UNC-50 Q10045 from SWISSPROT. A mammalian homologue, UNCL is a novel inner nuclear membrane protein that associates with RNA and is involved in the cell-surface expression of neuronal nicotinic receptors. UNCL plays a broader role because UNCL homologues are present in two yeast and a plant species, none of which express nicotinic receptors and it is also found in tissues that lack nicotinic receptors.
Probab=29.04 E-value=6.2 Score=28.61 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=18.5
Q ss_pred eeeehccccCCCCcccccccce
Q 035414 33 GYMMFRNKRVPSTSSYSKQTNK 54 (57)
Q Consensus 33 ~YM~frnKrv~sss~yskqt~~ 54 (57)
.|..+.-|||..+..|-|||..
T Consensus 26 ~~L~~~P~kVyr~~~yrKqTKn 47 (231)
T PF05216_consen 26 FYLCISPRKVYRNFYYRKQTKN 47 (231)
T ss_pred HHHHhCHHHHHHHhhhcccCCc
Confidence 4667788999999999999953
No 50
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=28.46 E-value=30 Score=21.83 Aligned_cols=15 Identities=20% Similarity=0.720 Sum_probs=8.0
Q ss_pred CceeeeEecCCchHH
Q 035414 2 PFRKIVEVEPPSPLR 16 (57)
Q Consensus 2 ~~r~~lEvepP~p~r 16 (57)
|.+.|-||..|.|+.
T Consensus 1 pL~~L~DI~~P~~vs 15 (146)
T PF14316_consen 1 PLAQLRDIHLPPPVS 15 (146)
T ss_pred CccccCCCCCCCCCC
Confidence 345555665555544
No 51
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=28.36 E-value=76 Score=19.83 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=15.4
Q ss_pred cCCchHHHHHHHHHHHHHhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVL 30 (57)
|+.++.+ ++|.++.++||++
T Consensus 81 e~~~~~~-~~gi~lIi~GVi~ 100 (110)
T PRK09541 81 QRLDLPA-IIGMMLICAGVLV 100 (110)
T ss_pred CCCCHHH-HHHHHHHHHHHHH
Confidence 5666666 4688888999987
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=28.25 E-value=70 Score=21.51 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVLP 31 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVLP 31 (57)
|+|++.. ++|+++.++|+++-
T Consensus 263 E~~t~~~-iiG~~lIi~gv~~~ 283 (292)
T PRK11272 263 ETLSPIE-WLALGVIVFAVVLV 283 (292)
T ss_pred CCCcHHH-HHHHHHHHHHHHHH
Confidence 7788766 67888888888763
No 53
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=27.90 E-value=44 Score=20.97 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHhhhheeeeehc
Q 035414 13 SPLRYLMGAVIMMIGVVLPVGYMMFR 38 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVLP~~YM~fr 38 (57)
.|-+|++|++.+++=-+.|.+-.+..
T Consensus 5 ~~~~yviGFiLSiiLT~i~F~~v~~~ 30 (94)
T TIGR02901 5 FPWKHVNGFILSLLLTFLALWVALYS 30 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 68999999999998888887766553
No 54
>KOG3787 consensus Glutamate/aspartate and neutral amino acid transporters [Amino acid transport and metabolism]
Probab=27.85 E-value=47 Score=27.14 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=26.2
Q ss_pred eeeeEecCCchHH-----HHHHHHH---HHHHhhhheeeeehccccC
Q 035414 4 RKIVEVEPPSPLR-----YLMGAVI---MMIGVVLPVGYMMFRNKRV 42 (57)
Q Consensus 4 r~~lEvepP~p~r-----Y~iGa~I---MmvGVVLP~~YM~frnKrv 42 (57)
.+++|+|-++-.. |.+-.++ .=-+++||+.|.++-+|+-
T Consensus 249 gkIlem~Dl~~~~~~Lg~Yv~TVi~GL~iH~~i~lPliYF~~TrkNP 295 (507)
T KOG3787|consen 249 GKILEMEDLGVTARQLGMYVVTVILGLFIHGFIVLPLIYFVVTRKNP 295 (507)
T ss_pred HhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEEEEccCh
Confidence 4788888887665 3322221 1236889999999988864
No 55
>PF02832 Flavi_glycop_C: Flavivirus glycoprotein, immunoglobulin-like domain; InterPro: IPR000336 Flaviruses are small, enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Yellow fever virus, West Nile virus, Tick-borne encephalitis virus, Japanese encephalitis virus, and Dengue virus 2 []. Flaviviruses consist of three structural proteins: the core nucleocapsid protein C (IPR001122 from INTERPRO), and the envelope glycoproteins M (IPR000069 from INTERPRO) and E. Glycoprotein E is a class II viral fusion protein that mediates both receptor binding and fusion. Class II viral fusion proteins are found in flaviviruses and alphaviruses, and are structurally distinct from class I fusion proteins from influenza-type viruses and retroviruses. Glycoprotein E is comprised of three domains: domain I (dimerisation domain) is an 8-stranded beta barrel, domain II (central domain) is an elongated domain composed of twelve beta strands and two alpha helices, and domain III (immunoglobulin-like domain) is an IgC-like module with ten beta strands. This entry represents the Ig-like domain III, which contains a putative receptor-binding loop [].; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2R29_A 1PJW_A 4FFY_A 3IRC_A 4ALA_C 3G7T_A 2I69_A 1ZTX_E 2P5P_A 1URZ_F ....
Probab=27.24 E-value=31 Score=22.48 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=8.8
Q ss_pred eeeeEecCCchHHH
Q 035414 4 RKIVEVEPPSPLRY 17 (57)
Q Consensus 4 r~~lEvepP~p~rY 17 (57)
+-++|+|||-=-+|
T Consensus 68 ~v~IE~epPfGdS~ 81 (97)
T PF02832_consen 68 KVFIEMEPPFGDSY 81 (97)
T ss_dssp EEEEEEE-SSEEEE
T ss_pred ceEEEEecCCCceE
Confidence 34799999964444
No 56
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=27.02 E-value=81 Score=20.23 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhheeee
Q 035414 18 LMGAVIMMIGVVLPVGYM 35 (57)
Q Consensus 18 ~iGa~IMmvGVVLP~~YM 35 (57)
..|+++-.+|.+||-...
T Consensus 72 ~~Gai~a~~~~~lP~~l~ 89 (169)
T PF02417_consen 72 FLGAIVATIGFILPSFLL 89 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 569999999999996543
No 57
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=25.87 E-value=72 Score=21.09 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHHhhhheeeeeh
Q 035414 13 SPLRYLMGAVIMMIGVVLPVGYMMF 37 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVLP~~YM~f 37 (57)
++-+|++|++.+.+=-++|+.-.|.
T Consensus 16 s~k~y~iGFvLsIiLT~ipF~~vm~ 40 (111)
T COG3125 16 SLKSYLIGFVLSIILTLIPFWVVMT 40 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999988888766553
No 58
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=25.81 E-value=62 Score=20.44 Aligned_cols=34 Identities=29% Similarity=0.688 Sum_probs=27.5
Q ss_pred cCCch---HHHHHHHHHHHHHhhhheeeeehccccCC
Q 035414 10 EPPSP---LRYLMGAVIMMIGVVLPVGYMMFRNKRVP 43 (57)
Q Consensus 10 epP~p---~rY~iGa~IMmvGVVLP~~YM~frnKrv~ 43 (57)
.+|.| +..+.|++...+|+-.=-||..+|.+|--
T Consensus 33 ~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrn 69 (77)
T PF11118_consen 33 FSPFPSLWLQFLAGLLLFAIGVGFIAGFILHRDRKRN 69 (77)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhHhheeecccc
Confidence 35555 46789999999999999999999977643
No 59
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=25.80 E-value=79 Score=21.98 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=15.1
Q ss_pred HHHhhhheeeeehccccCCCCcccccc
Q 035414 25 MIGVVLPVGYMMFRNKRVPSTSSYSKQ 51 (57)
Q Consensus 25 mvGVVLP~~YM~frnKrv~sss~yskq 51 (57)
.++|..=+.|.++|-+|......|..|
T Consensus 43 ~v~v~~~~~~~~~r~r~~~~~~~~~p~ 69 (226)
T TIGR01433 43 VIPVILMTLFFAWKYRATNKDADYSPN 69 (226)
T ss_pred HHHHHHHHheeeEEEeccCCcCCCCCc
Confidence 355555567777766554444445443
No 60
>PF15102 TMEM154: TMEM154 protein family
Probab=25.32 E-value=1e+02 Score=21.15 Aligned_cols=22 Identities=18% Similarity=0.455 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhheeeeehccccC
Q 035414 18 LMGAVIMMIGVVLPVGYMMFRNKRV 42 (57)
Q Consensus 18 ~iGa~IMmvGVVLP~~YM~frnKrv 42 (57)
+++++++++.|+| ++++|+||.
T Consensus 66 VLLvlLLl~vV~l---v~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCL---VIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHh---eeEEeeccc
Confidence 5555666666665 455566665
No 61
>PLN03160 uncharacterized protein; Provisional
Probab=24.95 E-value=1e+02 Score=21.19 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhheeeeehccccC
Q 035414 15 LRYLMGAVIMMIGVVLPVGYMMFRNKRV 42 (57)
Q Consensus 15 ~rY~iGa~IMmvGVVLP~~YM~frnKrv 42 (57)
..+++.+++.++++++=+.|.+||-|+-
T Consensus 40 ~~~~~a~~l~l~~v~~~l~~~vfrPk~P 67 (219)
T PLN03160 40 CGCITATLLILATTILVLVFTVFRVKDP 67 (219)
T ss_pred HHHHHHHHHHHHHHHHheeeEEEEccCC
Confidence 3567777788889999999999998654
No 62
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=24.82 E-value=26 Score=26.97 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=25.8
Q ss_pred eeEecCCchHHH------HHHHHHHHHHhhhheeeeehccccCC
Q 035414 6 IVEVEPPSPLRY------LMGAVIMMIGVVLPVGYMMFRNKRVP 43 (57)
Q Consensus 6 ~lEvepP~p~rY------~iGa~IMmvGVVLP~~YM~frnKrv~ 43 (57)
+++.++|-|+.. .+|.+.|++|.+. +.+...|.++.+
T Consensus 241 ~l~~~aPypl~s~pklLG~~GGi~Ll~G~~~-l~~l~~R~~~~~ 283 (372)
T TIGR02484 241 LLGQPAPYPLLSLPVILGLVGGVAMLAGAAG-LSGLEARADPEP 283 (372)
T ss_pred HccCCCCCCcccHHHHHHHHHHHHHHHHHHH-HHHHHHhcCccc
Confidence 566778877664 4688888898665 556666766666
No 63
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=24.76 E-value=88 Score=22.38 Aligned_cols=17 Identities=35% Similarity=0.886 Sum_probs=12.4
Q ss_pred ecCCchHHHHHHHHHHH
Q 035414 9 VEPPSPLRYLMGAVIMM 25 (57)
Q Consensus 9 vepP~p~rY~iGa~IMm 25 (57)
-||++...|++|+++.+
T Consensus 104 ye~~~~~~~l~~~~~~~ 120 (224)
T PF03839_consen 104 YEPSPLMQYLIGALLLV 120 (224)
T ss_pred ecCCcHHHHHHHHHHHH
Confidence 46888888988766543
No 64
>PRK10527 hypothetical protein; Provisional
Probab=24.25 E-value=59 Score=21.21 Aligned_cols=11 Identities=55% Similarity=0.960 Sum_probs=8.3
Q ss_pred HHHHHHhhhhe
Q 035414 22 VIMMIGVVLPV 32 (57)
Q Consensus 22 ~IMmvGVVLP~ 32 (57)
++=++|++||+
T Consensus 15 ~LG~iGi~LPl 25 (125)
T PRK10527 15 VLGTLGVVLPL 25 (125)
T ss_pred HHHHHHHhccC
Confidence 44568899997
No 65
>PRK11689 aromatic amino acid exporter; Provisional
Probab=23.99 E-value=93 Score=21.04 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=15.0
Q ss_pred cCCchHHHHHHHHHHHHHhhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVLP 31 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVLP 31 (57)
|+|++. .++|+++.++|+++=
T Consensus 265 E~~~~~-~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 265 TPLSFS-FWQGVAMVTAGSLLC 285 (295)
T ss_pred CCCcHH-HHHHHHHHHHhHHHH
Confidence 566654 567888888898763
No 66
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=23.66 E-value=59 Score=22.24 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhheeeeeh
Q 035414 19 MGAVIMMIGVVLPVGYMMF 37 (57)
Q Consensus 19 iGa~IMmvGVVLP~~YM~f 37 (57)
+|++|+++|||.--....|
T Consensus 55 fG~vili~GvvvT~vays~ 73 (129)
T PF15099_consen 55 FGVVILIAGVVVTAVAYSF 73 (129)
T ss_pred ehHHHHHHhhHhheeeEee
Confidence 5899999999886554444
No 67
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.04 E-value=61 Score=22.56 Aligned_cols=27 Identities=4% Similarity=0.146 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHhhhheeeeehccccC
Q 035414 14 PLRYLMGAVIMMIGVVLPVGYMMFRNKRV 42 (57)
Q Consensus 14 p~rY~iGa~IMmvGVVLP~~YM~frnKrv 42 (57)
|..|.+-.++|.+-+++. |++||+|+.
T Consensus 297 ~~gy~~~l~im~~i~~~~--~~~fkrk~W 323 (324)
T PRK09546 297 PFGFSIFCLLLVVLIGGV--AWWLKRSKW 323 (324)
T ss_pred cchHHHHHHHHHHHHHHH--HHHHHhccc
Confidence 456776666665555544 446887763
No 68
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=22.91 E-value=1e+02 Score=20.52 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=15.5
Q ss_pred cCCchHHHHHHHHHHHHHhhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVLP 31 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVLP 31 (57)
|.|++.+ .+|+++.++|+++-
T Consensus 113 e~~~~~~-~~g~~~~~~Gv~ll 133 (281)
T TIGR03340 113 ETLSPLA-WLGILIITLGLLVL 133 (281)
T ss_pred CCCCHHH-HHHHHHHHHHHHHH
Confidence 6677766 45888888888763
No 69
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=22.79 E-value=1.1e+02 Score=19.30 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=14.7
Q ss_pred cCCchHHHHHHHHHHHHHhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVL 30 (57)
|++++.+ ++|.+..++||++
T Consensus 86 e~~~~~~-~~gi~lIi~GVi~ 105 (109)
T PRK10650 86 QRLNRKG-WIGLVLLLAGMVM 105 (109)
T ss_pred CCCCHHH-HHHHHHHHHHHHH
Confidence 5666666 4688888888875
No 70
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.66 E-value=39 Score=21.28 Aligned_cols=24 Identities=17% Similarity=0.558 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhheeeeehccccC
Q 035414 17 YLMGAVIMMIGVVLPVGYMMFRNKRV 42 (57)
Q Consensus 17 Y~iGa~IMmvGVVLP~~YM~frnKrv 42 (57)
||+|+++-.++++ ++|.+||-++.
T Consensus 5 ~iv~~~~~v~~~i--~~y~~~k~~ka 28 (87)
T PF10883_consen 5 QIVGGVGAVVALI--LAYLWWKVKKA 28 (87)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4555554444433 57888887765
No 71
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=22.50 E-value=91 Score=20.06 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=23.4
Q ss_pred cCCchHHHHHHHHHHHHHhhhheeeeehc
Q 035414 10 EPPSPLRYLMGAVIMMIGVVLPVGYMMFR 38 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVLP~~YM~fr 38 (57)
+-.|+-+|++|++..++=-+.|.+-.+..
T Consensus 11 ~hgs~k~yviGFiLSliLT~i~F~lv~~~ 39 (109)
T PRK10582 11 SHGSVKTYMTGFILSIILTVIPFWMVMTG 39 (109)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34588999999999999888887766554
No 72
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.42 E-value=54 Score=23.27 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHhhhheeeeehc
Q 035414 13 SPLRYLMGAVIMMIGVVLPVGYMMFR 38 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVLP~~YM~fr 38 (57)
+|-+-++-++-+++|.++++++.+++
T Consensus 393 ~P~~~~~l~~~~~~Gl~lg~~~~~l~ 418 (444)
T TIGR03017 393 SPRLLLNLVLSIFLGMLLGIGFAFLA 418 (444)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544444555667888888887765
No 73
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=22.37 E-value=84 Score=15.44 Aligned_cols=6 Identities=33% Similarity=0.728 Sum_probs=3.5
Q ss_pred CchHHH
Q 035414 12 PSPLRY 17 (57)
Q Consensus 12 P~p~rY 17 (57)
|.|..|
T Consensus 3 PEPst~ 8 (25)
T PF07589_consen 3 PEPSTL 8 (25)
T ss_pred CCcHHH
Confidence 566654
No 74
>PRK10999 malF maltose transporter membrane protein; Provisional
Probab=22.21 E-value=58 Score=25.62 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.3
Q ss_pred hHHHHH-HHHHHHHHhhhheeeee
Q 035414 14 PLRYLM-GAVIMMIGVVLPVGYMM 36 (57)
Q Consensus 14 p~rY~i-Ga~IMmvGVVLP~~YM~ 36 (57)
|.||+. |.+.|++=++.|+.|-+
T Consensus 67 ~~ry~~pg~~~~~~f~~~p~~~t~ 90 (520)
T PRK10999 67 AWRYVYPGLAGMGLFVLFPLVCTI 90 (520)
T ss_pred chhhhhHHHHHHHHHHHHHHHhEE
Confidence 789987 77888888999998865
No 75
>COG3059 Predicted membrane protein [Function unknown]
Probab=21.83 E-value=79 Score=22.85 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHhhhhee
Q 035414 14 PLRYLMGAVIMMIGVVLPVG 33 (57)
Q Consensus 14 p~rY~iGa~IMmvGVVLP~~ 33 (57)
.++|++|++++++|..+=.+
T Consensus 88 ~~S~~lGi~e~ivgilvL~g 107 (182)
T COG3059 88 AVSNLLGITEVIVGILVLIG 107 (182)
T ss_pred hHHHHhhHHHHHHHHHHHhc
Confidence 57899999999999876544
No 76
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=21.78 E-value=90 Score=19.60 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHHhhhheeeeehc
Q 035414 13 SPLRYLMGAVIMMIGVVLPVGYMMFR 38 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVLP~~YM~fr 38 (57)
|+-+|++|++.+++=-+.|.+-.+..
T Consensus 3 ~~k~yviGFiLsliLT~i~F~~v~~~ 28 (96)
T TIGR02847 3 SLKSYLIGFVLSVILTAIPFGLVMSG 28 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67899999999998888887665543
No 77
>PF14329 DUF4386: Domain of unknown function (DUF4386)
Probab=21.63 E-value=41 Score=21.83 Aligned_cols=28 Identities=21% Similarity=0.517 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhheeeeehccccCCCC
Q 035414 17 YLMGAVIMMIGVVLPVGYMMFRNKRVPST 45 (57)
Q Consensus 17 Y~iGa~IMmvGVVLP~~YM~frnKrv~ss 45 (57)
|-+|.+.+-++ .++++|.++|+|..|+-
T Consensus 135 ~~ig~i~~g~~-~lllg~l~~rs~~~Pr~ 162 (215)
T PF14329_consen 135 EHIGLIFFGLW-LLLLGYLLLRSRLLPRW 162 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHcCchhHH
Confidence 45566433333 57899999999999875
No 78
>PF10270 MMgT: Membrane magnesium transporter; InterPro: IPR018937 This entry represents a novel family of membrane magnesium transporters (MMgT) []. The proteins, MMgT1 and MMgT2, are localised to the Golgi complex and post-Golgi vesicles, including the early endosomes, suggesting that they may provide regulated pathways for Mg2+ transport in the Golgi and post-Golgi organelles of epithelium-derived cells [].
Probab=21.53 E-value=82 Score=19.50 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhh
Q 035414 16 RYLMGAVIMMIGVVL 30 (57)
Q Consensus 16 rY~iGa~IMmvGVVL 30 (57)
.-++|+++.++|+++
T Consensus 41 E~lv~l~l~~~G~v~ 55 (106)
T PF10270_consen 41 ETLVSLILFVFGIVL 55 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 347899999999987
No 79
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=21.44 E-value=59 Score=23.88 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHhhhheeee
Q 035414 13 SPLRYLMGAVIMMIGVVLPVGYM 35 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVLP~~YM 35 (57)
.|+.|-+|.++.-+|+||-++-|
T Consensus 94 ~p~~~~lg~alfglG~VLVLSSm 116 (208)
T KOG4142|consen 94 TPAAYSLGLALFGLGVVLVLSSM 116 (208)
T ss_pred ChHHHHHHHHHHhhhHHHHHHHH
Confidence 68999999999999999988755
No 80
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.26 E-value=59 Score=19.77 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhheeeeehccccCCCC
Q 035414 18 LMGAVIMMIGVVLPVGYMMFRNKRVPST 45 (57)
Q Consensus 18 ~iGa~IMmvGVVLP~~YM~frnKrv~ss 45 (57)
++-+++.++.|..+-.+.=+++|+--+.
T Consensus 7 ~~Pliif~ifVap~wl~lHY~~k~~~~~ 34 (75)
T TIGR02976 7 AIPLIIFVIFVAPLWLILHYRSKRKTAA 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 4456677777777777777887765543
No 81
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=20.89 E-value=73 Score=19.16 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHHhhhheeeee
Q 035414 12 PSPLRYLMGAVIMMIGVVLPVGYMM 36 (57)
Q Consensus 12 P~p~rY~iGa~IMmvGVVLP~~YM~ 36 (57)
-+..-.++|+++-++=|++|+.+|+
T Consensus 40 ~~~~GfaiG~~~AlvLv~ip~~l~~ 64 (64)
T PF09472_consen 40 TGIKGFAIGFLFALVLVGIPILLMF 64 (64)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455678888888888888887663
No 82
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=20.79 E-value=1.1e+02 Score=19.81 Aligned_cols=18 Identities=28% Similarity=0.761 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHhhh
Q 035414 13 SPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVL 30 (57)
-|.-+++|.++.++|.+-
T Consensus 101 ~p~v~v~~~l~iv~~~~~ 118 (124)
T PF14387_consen 101 KPAVRVLGGLIIVIGIIY 118 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367788888888888775
No 83
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=20.73 E-value=1e+02 Score=22.80 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=18.3
Q ss_pred cCCchHHHHHHHHHHHHHhhhheeeeehcc
Q 035414 10 EPPSPLRYLMGAVIMMIGVVLPVGYMMFRN 39 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVLP~~YM~frn 39 (57)
+.|+++ |++|+++.++|+++ |..-.+
T Consensus 283 ~~~~~l-y~~af~lIiiG~vv---y~~~~~ 308 (334)
T PF06027_consen 283 YKFSWL-YILAFALIIIGFVV---YNLAES 308 (334)
T ss_pred ccccHH-HHHHHHHHHHHhhe---EEccCC
Confidence 345444 99999999999975 554443
No 84
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=20.63 E-value=96 Score=21.87 Aligned_cols=22 Identities=36% Similarity=0.760 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHhhhheee
Q 035414 13 SPLRYLMGAVIMMIGVVLPVGY 34 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVLP~~Y 34 (57)
--.+|++|++.+.+|+.|=++.
T Consensus 84 ~~~S~~lG~vEi~~~ill~~g~ 105 (175)
T PF04224_consen 84 YGFSYLLGVVEIIIGILLLLGI 105 (175)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999886664
No 85
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=20.61 E-value=1.1e+02 Score=22.84 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhhee----eeehccccCCCCccccc
Q 035414 17 YLMGAVIMMIGVVLPVG----YMMFRNKRVPSTSSYSK 50 (57)
Q Consensus 17 Y~iGa~IMmvGVVLP~~----YM~frnKrv~sss~ysk 50 (57)
.++.+++.|+-|++|+. |+.+|-++......|..
T Consensus 43 Li~~~~~~~liv~i~V~~l~~~f~~ryR~~~~~a~y~p 80 (315)
T PRK10525 43 LILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSP 80 (315)
T ss_pred HHHHHHHHHHhhHHHHHHHHheeEEEEecCCCcCCCCC
Confidence 45556666666777765 66655443333334543
No 86
>PF12669 P12: Virus attachment protein p12 family
Probab=20.51 E-value=36 Score=19.47 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhhheeeeehccccC
Q 035414 18 LMGAVIMMIGVVLPVGYMMFRNKRV 42 (57)
Q Consensus 18 ~iGa~IMmvGVVLP~~YM~frnKrv 42 (57)
|+|++|..+...+ +.+-++|++|-
T Consensus 3 II~~Ii~~~~~~v-~~r~~~k~~K~ 26 (58)
T PF12669_consen 3 IIGIIILAAVAYV-AIRKFIKDKKK 26 (58)
T ss_pred eHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 4555544333321 23556666554
No 87
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.45 E-value=97 Score=22.08 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 035414 15 LRYLMGAVIMMIGVVL 30 (57)
Q Consensus 15 ~rY~iGa~IMmvGVVL 30 (57)
+-.+||+++++|.+|+
T Consensus 16 LNiaI~IV~lLIiiva 31 (217)
T PF07423_consen 16 LNIAIGIVSLLIIIVA 31 (217)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4578999998888874
No 88
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.43 E-value=24 Score=25.16 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=11.5
Q ss_pred ceeeeEecCCchH
Q 035414 3 FRKIVEVEPPSPL 15 (57)
Q Consensus 3 ~r~~lEvepP~p~ 15 (57)
+|+||.++||.|-
T Consensus 57 vrslL~i~pPEPd 69 (165)
T COG4016 57 VRSLLDIKPPEPD 69 (165)
T ss_pred HHHHhCCCCCCCC
Confidence 5889999999995
No 89
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=20.20 E-value=97 Score=22.56 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=15.4
Q ss_pred cCCchHHHHHHHHHHHHHhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVL 30 (57)
|++++.. ++|.++.++||.+
T Consensus 306 E~lt~~~-~iG~~LIl~Gv~l 325 (358)
T PLN00411 306 DSLYLGC-LIGGILITLGFYA 325 (358)
T ss_pred CCCcHHH-HHHHHHHHHHHHH
Confidence 6677655 4788889999977
No 90
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.03 E-value=67 Score=19.63 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=17.9
Q ss_pred HHHHHHHhhhheeeeehccccCCCCcccc
Q 035414 21 AVIMMIGVVLPVGYMMFRNKRVPSTSSYS 49 (57)
Q Consensus 21 a~IMmvGVVLP~~YM~frnKrv~sss~ys 49 (57)
++|+++.|..+-..+-||+|+- ++++-|
T Consensus 10 livf~ifVap~WL~lHY~sk~~-~~~gLs 37 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILHYRSKWK-SSQGLS 37 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cCCCCC
Confidence 4556677777777778888874 344344
No 91
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=20.03 E-value=1.2e+02 Score=19.38 Aligned_cols=20 Identities=30% Similarity=0.679 Sum_probs=13.9
Q ss_pred EecCCchHHHHHHHHHHHHH
Q 035414 8 EVEPPSPLRYLMGAVIMMIG 27 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvG 27 (57)
|-|+|.|-|+.-+...++.+
T Consensus 66 ~~e~~~pkRFAq~iG~~f~~ 85 (131)
T PF14340_consen 66 ELEDAAPKRFAQGIGLVFLG 85 (131)
T ss_pred CCCCCcchhHHHHHHHHHHH
Confidence 77899999987555444443
Done!