Query 035414
Match_columns 57
No_of_seqs 13 out of 15
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 03:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 63.6 6 0.00021 23.1 2.7 20 10-30 81-100 (110)
2 2i68_A Protein EMRE; transmemb 47.6 8.7 0.0003 23.8 1.6 21 10-31 81-101 (137)
3 3fm7_C Dynein intermediate cha 46.7 4.3 0.00015 20.7 0.1 9 45-53 17-25 (27)
4 1s7q_A H-2KB, H-2 class I hist 38.4 7.4 0.00025 26.7 0.2 10 32-41 303-313 (348)
5 3glw_Z Dynein intermediate cha 38.3 6.9 0.00024 20.1 0.0 9 46-54 17-25 (28)
6 2pg1_I Cytoplasmic dynein 1 in 37.5 7.9 0.00027 20.3 0.2 9 45-53 22-30 (33)
7 2cfq_A Lactose permease; trans 36.9 26 0.0009 22.5 2.7 35 17-55 382-416 (417)
8 4h33_A LMO2059 protein; bilaye 35.9 30 0.001 20.7 2.7 23 8-30 62-84 (137)
9 2k9p_A Pheromone alpha factor 32.8 14 0.00047 21.9 0.8 21 19-43 29-49 (80)
10 1orq_C Potassium channel; volt 30.6 40 0.0014 20.5 2.7 23 8-30 184-206 (223)
11 1v54_M VIIIB, IX, cytochrome C 30.6 40 0.0014 18.5 2.4 26 11-36 9-34 (46)
12 3rlf_F Maltose transport syste 29.4 23 0.0008 25.8 1.7 23 14-36 64-87 (514)
13 3vtt_A Envelope protein E; imm 29.3 19 0.00064 22.9 1.0 13 6-18 73-85 (107)
14 3uzq_B Envelope protein; dengu 29.0 21 0.00071 23.0 1.2 13 6-18 72-84 (114)
15 4ev6_A Magnesium transport pro 28.4 33 0.0011 22.9 2.1 27 13-41 311-337 (339)
16 2a9h_A Voltage-gated potassium 26.1 53 0.0018 20.3 2.7 23 8-30 103-125 (155)
17 2ih3_C Voltage-gated potassium 25.9 57 0.002 19.0 2.7 23 8-30 80-102 (122)
18 3eff_K Voltage-gated potassium 24.9 55 0.0019 19.0 2.5 23 8-30 59-81 (139)
19 3uzv_A Envelope protein; dengu 24.9 25 0.00085 22.6 1.0 14 5-18 71-84 (114)
20 3uyp_B Envelope protein; dengu 24.7 25 0.00086 22.6 1.0 13 6-18 72-84 (114)
21 2z73_A Rhodopsin; visual pigme 24.0 43 0.0015 21.5 2.0 33 12-44 30-67 (448)
22 3uze_C Envelope protein; dengu 22.6 29 0.00099 23.1 1.0 13 6-18 72-84 (139)
23 2jqm_A Envelope protein E; yel 22.4 30 0.001 22.1 1.0 14 5-18 77-90 (112)
24 3vou_A ION transport 2 domain 21.4 81 0.0028 18.6 2.8 23 8-30 71-93 (148)
25 2q67_A Potassium channel prote 21.3 83 0.0029 18.1 2.8 23 8-30 68-90 (114)
26 3ldc_A Calcium-gated potassium 20.6 90 0.0031 16.9 2.7 23 8-30 47-69 (82)
27 2ao6_B NCOA-2, 14-MER fragment 20.2 29 0.00098 17.6 0.5 9 13-21 17-25 (26)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=63.64 E-value=6 Score=23.07 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=16.5
Q ss_pred cCCchHHHHHHHHHHHHHhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVL 30 (57)
|++++.+ ++|.++.++||++
T Consensus 81 E~~s~~~-~~Gi~lIi~Gv~~ 100 (110)
T 3b5d_A 81 QRLDLPA-IIGMMLICAGVLI 100 (110)
T ss_pred CCCCHHH-HHHHHHHHHHHHH
Confidence 7777776 6799999999986
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=47.55 E-value=8.7 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=12.2
Q ss_pred cCCchHHHHHHHHHHHHHhhhh
Q 035414 10 EPPSPLRYLMGAVIMMIGVVLP 31 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVLP 31 (57)
|++++.+ ++|.++.++||++=
T Consensus 81 E~ls~~~-~~Gi~LIi~GV~ll 101 (137)
T 2i68_A 81 QRLDLPA-IIGMMLICAGVLII 101 (137)
T ss_dssp ------C-HHHHHHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHHHHHHHH
Confidence 5666665 67888899999873
No 3
>3fm7_C Dynein intermediate chain, cytosolic; cytoplasmic dynein, light chain tctex-1, tctex, light chain intermediate chain; 3.50A {Drosophila melanogaster}
Probab=46.74 E-value=4.3 Score=20.66 Aligned_cols=9 Identities=56% Similarity=0.660 Sum_probs=7.1
Q ss_pred Ccccccccc
Q 035414 45 TSSYSKQTN 53 (57)
Q Consensus 45 ss~yskqt~ 53 (57)
..+|||||.
T Consensus 17 ~V~YsKeTQ 25 (27)
T 3fm7_C 17 TLVYTKQTQ 25 (27)
T ss_dssp CCCEEEEEE
T ss_pred eeEEeeecc
Confidence 467999985
No 4
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=38.39 E-value=7.4 Score=26.71 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=0.0
Q ss_pred eeeeehc-ccc
Q 035414 32 VGYMMFR-NKR 41 (57)
Q Consensus 32 ~~YM~fr-nKr 41 (57)
+++.++| +|+
T Consensus 303 ~~~~~~~~k~~ 313 (348)
T 1s7q_A 303 VAFVMKMRRRN 313 (348)
T ss_dssp -----------
T ss_pred EEEEEEEEEec
Confidence 5677888 544
No 5
>3glw_Z Dynein intermediate chain; LC8, tctex, tctex-1, IC, dynein chain, entropy, allostery, chelate effect, multivalent., microtubule; 3.15A {Drosophila melanogaster}
Probab=38.25 E-value=6.9 Score=20.14 Aligned_cols=9 Identities=44% Similarity=0.571 Sum_probs=6.9
Q ss_pred cccccccce
Q 035414 46 SSYSKQTNK 54 (57)
Q Consensus 46 s~yskqt~~ 54 (57)
..|||||.-
T Consensus 17 v~YsKqTQT 25 (28)
T 3glw_Z 17 LVYTKQTQT 25 (28)
T ss_pred eEEEeeeee
Confidence 569999853
No 6
>2pg1_I Cytoplasmic dynein 1 intermediate chain 2; dynein light chain, LC8, PIN, tctex1, structural protein; 2.80A {Rattus norvegicus}
Probab=37.45 E-value=7.9 Score=20.27 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=6.9
Q ss_pred Ccccccccc
Q 035414 45 TSSYSKQTN 53 (57)
Q Consensus 45 ss~yskqt~ 53 (57)
+.+|||||.
T Consensus 22 ~v~YsK~TQ 30 (33)
T 2pg1_I 22 IVTYTKETQ 30 (33)
T ss_dssp CCEEEEEEE
T ss_pred eeEEecccc
Confidence 367999985
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=36.88 E-value=26 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhheeeeehccccCCCCccccccccee
Q 035414 17 YLMGAVIMMIGVVLPVGYMMFRNKRVPSTSSYSKQTNKV 55 (57)
Q Consensus 17 Y~iGa~IMmvGVVLP~~YM~frnKrv~sss~yskqt~~v 55 (57)
|++.+++.++|.++- + +..|+..++|-+|+|.|.|
T Consensus 382 f~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 416 (417)
T 2cfq_A 382 YLVLGLVALGFTLIS--V--FTLSGPGPLSLLRRQVNEV 416 (417)
T ss_dssp HHHHHHHHHHHHHHH--T--TSSCCSCTTCSSSSSSTTT
T ss_pred HHHHHHHHHHHHHHH--H--hhhcCCCchHHHHHHhhcc
Confidence 445555555665542 1 2234455667799999976
No 8
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=35.94 E-value=30 Score=20.69 Aligned_cols=23 Identities=17% Similarity=0.746 Sum_probs=19.0
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
++.|-++.--+++.+.|++|+.+
T Consensus 62 Di~P~t~~gr~~~~~~~~~g~~~ 84 (137)
T 4h33_A 62 DIVPVTPIGRILASIMMLFGIAF 84 (137)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHhHHHHHHHHHHHHHHH
Confidence 45678888889999999999765
No 9
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=32.82 E-value=14 Score=21.92 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhheeeeehccccCC
Q 035414 19 MGAVIMMIGVVLPVGYMMFRNKRVP 43 (57)
Q Consensus 19 iGa~IMmvGVVLP~~YM~frnKrv~ 43 (57)
+||.++++ .+.+|..||||.|
T Consensus 29 iGAs~lll----iil~lltkkrrsp 49 (80)
T 2k9p_A 29 SGAAALTL----IVVWITSRSRKTP 49 (80)
T ss_dssp HHHHHHHH----HHHHHHTCCSCCC
T ss_pred HHHHHHHH----HHHHHHhccccCh
Confidence 46666554 4456777877754
No 10
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=30.59 E-value=40 Score=20.54 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=18.8
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
++.|-++..-+.+.+.|++|+.+
T Consensus 184 di~P~t~~~~~~~~~~~~~G~~~ 206 (223)
T 1orq_C 184 DVVPATPIGKVIGIAVMLTGISA 206 (223)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHhHHHHHHHHHHHHHHH
Confidence 45677888889999999999865
No 11
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=30.57 E-value=40 Score=18.50 Aligned_cols=26 Identities=27% Similarity=0.715 Sum_probs=22.8
Q ss_pred CCchHHHHHHHHHHHHHhhhheeeee
Q 035414 11 PPSPLRYLMGAVIMMIGVVLPVGYMM 36 (57)
Q Consensus 11 pP~p~rY~iGa~IMmvGVVLP~~YM~ 36 (57)
+=|+..-++|..++.++..+|-+|..
T Consensus 9 ~~s~~E~aigl~v~f~~~L~PagWVL 34 (46)
T 1v54_M 9 PTSPKEQAIGLSVTFLSFLLPAGWVL 34 (46)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45889999999999999999988865
No 12
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=29.39 E-value=23 Score=25.85 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.3
Q ss_pred hHHHHH-HHHHHHHHhhhheeeee
Q 035414 14 PLRYLM-GAVIMMIGVVLPVGYMM 36 (57)
Q Consensus 14 p~rY~i-Ga~IMmvGVVLP~~YM~ 36 (57)
|.||+. |.+.|.+=++.|+.|-+
T Consensus 64 ~~~y~~p~~~~~~~~~~~~~~~t~ 87 (514)
T 3rlf_F 64 AWRYVYPGMAGMGLFVLFPLVCTI 87 (514)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHheE
Confidence 789987 77788888999998865
No 13
>3vtt_A Envelope protein E; immunoglobin like domain, epitope presentation, cellular ATT viral protein, structural protein; 1.70A {Dengue virus type 3} PDB: 4ala_C*
Probab=29.28 E-value=19 Score=22.94 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=10.2
Q ss_pred eeEecCCchHHHH
Q 035414 6 IVEVEPPSPLRYL 18 (57)
Q Consensus 6 ~lEvepP~p~rY~ 18 (57)
++|+|||-=-+||
T Consensus 73 ~iE~epPfGdS~I 85 (107)
T 3vtt_A 73 NIEAEPPFGESNI 85 (107)
T ss_dssp EEEEECCSEEEEE
T ss_pred EEEEeCCCCceEE
Confidence 8999999765554
No 14
>3uzq_B Envelope protein; dengue antibody neutralization, immune system; HET: MES; 1.60A {Dengue virus 1} PDB: 4ffz_A 4ffy_A 3irc_A 3egp_A 4al8_C
Probab=29.05 E-value=21 Score=22.99 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=10.5
Q ss_pred eeEecCCchHHHH
Q 035414 6 IVEVEPPSPLRYL 18 (57)
Q Consensus 6 ~lEvepP~p~rY~ 18 (57)
++|+|||-=-+||
T Consensus 72 ~IE~ePPfGdS~I 84 (114)
T 3uzq_B 72 NIETEPPFGESYI 84 (114)
T ss_dssp EEEECCCSSEEEE
T ss_pred EEEEecCCCceEE
Confidence 8999999766665
No 15
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.42 E-value=33 Score=22.93 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHHhhhheeeeehcccc
Q 035414 13 SPLRYLMGAVIMMIGVVLPVGYMMFRNKR 41 (57)
Q Consensus 13 ~p~rY~iGa~IMmvGVVLP~~YM~frnKr 41 (57)
.|..|.+-.++|.+-++++ |.+||+|+
T Consensus 311 ~~~gy~~~l~~m~~~~~~~--~~~fkrk~ 337 (339)
T 4ev6_A 311 NPQGFWLVMALMVVIIMIF--VYIFRRSG 337 (339)
T ss_dssp CTTHHHHHHHHHHHHHHHH--HHHHHTTT
T ss_pred CchHHHHHHHHHHHHHHHH--HHHHHHcC
Confidence 3556666555665555554 45688876
No 16
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=26.11 E-value=53 Score=20.27 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=18.4
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
++.|-++..-+++.+.|++|+.+
T Consensus 103 Di~P~t~~gr~~~~~~~l~Gv~~ 125 (155)
T 2a9h_A 103 DLYPVTLWGRCVAVVVMVAGITS 125 (155)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHH
Confidence 45677888888899999998865
No 17
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=25.86 E-value=57 Score=18.96 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=18.6
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
++.|-++..-++..+.|++|+.+
T Consensus 80 Di~P~t~~gr~~~~~~~~~Gi~~ 102 (122)
T 2ih3_C 80 DLYPVTLWGRLVAVVVMVAGITS 102 (122)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHH
Confidence 45677888888889999999875
No 18
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=24.91 E-value=55 Score=19.03 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=17.3
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
++-|-++..-++..+.+++|+.+
T Consensus 59 d~~P~t~~~r~~~~~~~~~G~~~ 81 (139)
T 3eff_K 59 DLYPVTLWGRLVAVVVMVAGITS 81 (139)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHHHHHHHHHH
Confidence 35577778778888888888765
No 19
>3uzv_A Envelope protein; dengue antibody neutralization, immune system; 2.10A {Dengue virus 2}
Probab=24.89 E-value=25 Score=22.60 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=10.7
Q ss_pred eeeEecCCchHHHH
Q 035414 5 KIVEVEPPSPLRYL 18 (57)
Q Consensus 5 ~~lEvepP~p~rY~ 18 (57)
-++|+|||-=-+||
T Consensus 71 v~IE~ePPfGdS~I 84 (114)
T 3uzv_A 71 VNIEAEPPFGDSYI 84 (114)
T ss_dssp EEEEEECCSEEEEE
T ss_pred eEEEEeCCCCceEE
Confidence 37999999766664
No 20
>3uyp_B Envelope protein; dengue antibody neutralization, immune system; 2.00A {Dengue virus 4} PDB: 2h0p_A 4am0_Q
Probab=24.72 E-value=25 Score=22.58 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=10.4
Q ss_pred eeEecCCchHHHH
Q 035414 6 IVEVEPPSPLRYL 18 (57)
Q Consensus 6 ~lEvepP~p~rY~ 18 (57)
++|+|||-=-+||
T Consensus 72 ~IE~ePPfGdS~I 84 (114)
T 3uyp_B 72 NIELEPPFGDSYI 84 (114)
T ss_dssp EEEEECCSEEEEE
T ss_pred EEEEeCCCCceEE
Confidence 7999999766665
No 21
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=23.98 E-value=43 Score=21.48 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHHHHhh-----hheeeeehccccCCC
Q 035414 12 PSPLRYLMGAVIMMIGVV-----LPVGYMMFRNKRVPS 44 (57)
Q Consensus 12 P~p~rY~iGa~IMmvGVV-----LP~~YM~frnKrv~s 44 (57)
+....++++++..+++++ +-+.+.++|+|+..+
T Consensus 30 ~~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~ 67 (448)
T 2z73_A 30 PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQT 67 (448)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCS
T ss_pred CchHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCC
Confidence 344677777665544443 456677788776543
No 22
>3uze_C Envelope protein; dengue antibody neutralization, immune system; HET: EPE; 2.04A {Dengue virus 3}
Probab=22.58 E-value=29 Score=23.09 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=10.6
Q ss_pred eeEecCCchHHHH
Q 035414 6 IVEVEPPSPLRYL 18 (57)
Q Consensus 6 ~lEvepP~p~rY~ 18 (57)
++|+|||-=-+||
T Consensus 72 ~IE~ePPfGDSyI 84 (139)
T 3uze_C 72 NIEAEPPFGESNI 84 (139)
T ss_dssp EEEEECCSEEEEE
T ss_pred EEEEeCCCCceEE
Confidence 8999999766665
No 23
>2jqm_A Envelope protein E; yellow fever envelope protein domain III, asibi strain, structure, transferase; NMR {Yellow fever virus} PDB: 2jv6_A
Probab=22.43 E-value=30 Score=22.11 Aligned_cols=14 Identities=36% Similarity=0.698 Sum_probs=10.3
Q ss_pred eeeEecCCchHHHH
Q 035414 5 KIVEVEPPSPLRYL 18 (57)
Q Consensus 5 ~~lEvepP~p~rY~ 18 (57)
-++|+|||-=-+||
T Consensus 77 v~IE~epPfGdSyI 90 (112)
T 2jqm_A 77 VLIEVNPPFGDSYI 90 (112)
T ss_dssp CEEEEECCSEEEEE
T ss_pred eEEEEeCCCCCcEE
Confidence 37999999655554
No 24
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=21.39 E-value=81 Score=18.64 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=18.1
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
++.|-++..-+...+.+++|+.+
T Consensus 71 d~~p~t~~~r~~~~~~~~~g~~~ 93 (148)
T 3vou_A 71 NFSPQTDFGKVFTILYIFIGIGL 93 (148)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHH
Confidence 45677888888888888988765
No 25
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=21.28 E-value=83 Score=18.15 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=18.5
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
++.|-++..-+...+.+++|+.+
T Consensus 68 di~P~t~~gr~~~~~~~~~G~~~ 90 (114)
T 2q67_A 68 NFSPQTDFGKIFTILYIFIGIGL 90 (114)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHhHHHHHHHHHHHHHHH
Confidence 45577888888899999999876
No 26
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=20.59 E-value=90 Score=16.90 Aligned_cols=23 Identities=17% Similarity=0.522 Sum_probs=17.5
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
++.|-++..-+...+.+++|+.+
T Consensus 47 di~P~t~~~r~~~~~~~~~G~~~ 69 (82)
T 3ldc_A 47 DYSPHTPLGMYFTCTLIVLGIGT 69 (82)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHH
Confidence 35566788888888888888764
No 27
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=20.15 E-value=29 Score=17.55 Aligned_cols=9 Identities=67% Similarity=1.246 Sum_probs=6.9
Q ss_pred chHHHHHHH
Q 035414 13 SPLRYLMGA 21 (57)
Q Consensus 13 ~p~rY~iGa 21 (57)
..+||++|+
T Consensus 17 aalryllga 25 (26)
T 2ao6_B 17 AALRYLLGA 25 (26)
T ss_pred HHHHHHhcc
Confidence 467898886
Done!