Query 035414
Match_columns 57
No_of_seqs 13 out of 15
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 03:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035414.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035414hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 57.4 2.2 0.00016 27.7 1.7 24 13-36 51-75 (248)
2 d1v54m_ f.23.7.1 (M:) Mitochon 51.1 5.6 0.00041 20.7 2.4 27 10-36 8-34 (43)
3 d2iuba2 f.17.3.1 (A:286-349) M 34.0 13 0.00095 18.7 2.1 8 34-41 57-64 (64)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 33.9 17 0.0012 19.3 2.7 23 8-30 59-81 (103)
5 d1p7ba2 f.14.1.1 (A:36-151) In 29.0 25 0.0018 18.7 2.9 23 8-30 80-102 (116)
6 d1svba1 b.1.18.4 (A:303-395) E 28.5 9.3 0.00068 22.3 1.0 14 5-18 68-81 (93)
7 d1ok8a1 b.1.18.4 (A:298-394) E 26.1 12 0.00087 21.9 1.2 14 5-18 68-81 (97)
8 d1ztxe1 b.1.18.4 (E:300-400) E 24.9 12 0.00086 22.1 1.0 14 5-18 72-85 (101)
9 d2ffsa1 d.129.3.7 (A:1-151) Hy 23.7 17 0.0012 22.1 1.6 13 1-13 1-13 (151)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 22.9 4.9 0.00036 21.9 -1.0 23 26-48 30-52 (91)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=57.35 E-value=2.2 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=19.3
Q ss_pred chHHHHH-HHHHHHHHhhhheeeee
Q 035414 13 SPLRYLM-GAVIMMIGVVLPVGYMM 36 (57)
Q Consensus 13 ~p~rY~i-Ga~IMmvGVVLP~~YM~ 36 (57)
-|.||++ |.+.|++=|+.|+.|=+
T Consensus 51 ~p~kyi~PG~~~l~~Fvi~Pi~yT~ 75 (248)
T d2r6gf1 51 YAWRYVYPGMAGMGLFVLFPLVCTI 75 (248)
T ss_dssp TTHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cceehhhhHHHHHHHHHHHhheeEE
Confidence 3889987 78888888999998744
No 2
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=51.12 E-value=5.6 Score=20.65 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=23.7
Q ss_pred cCCchHHHHHHHHHHHHHhhhheeeee
Q 035414 10 EPPSPLRYLMGAVIMMIGVVLPVGYMM 36 (57)
Q Consensus 10 epP~p~rY~iGa~IMmvGVVLP~~YM~ 36 (57)
+|=|+..-++|..+|.++..+|-||.+
T Consensus 8 ~~ls~~E~aigLt~~f~~~L~PaGwVL 34 (43)
T d1v54m_ 8 TPTSPKEQAIGLSVTFLSFLLPAGWVL 34 (43)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHccHHHHH
Confidence 366899999999999999999999864
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=33.96 E-value=13 Score=18.68 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=5.2
Q ss_pred eeehcccc
Q 035414 34 YMMFRNKR 41 (57)
Q Consensus 34 YM~frnKr 41 (57)
+..||+||
T Consensus 57 ~~~f~rkk 64 (64)
T d2iuba2 57 VVYFKKKK 64 (64)
T ss_dssp HTTTTSCC
T ss_pred HHHHhccC
Confidence 45677776
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=33.95 E-value=17 Score=19.32 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=18.4
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
++-|=++.--+++.+.|++|+.+
T Consensus 59 Di~P~t~~gr~~~~~~~~~Gi~~ 81 (103)
T d1r3jc_ 59 DLYPVTLWGRCVAVVVMVAGITS 81 (103)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHHHHHHHH
Confidence 45677888888999999999764
No 5
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=29.03 E-value=25 Score=18.75 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=18.3
Q ss_pred EecCCchHHHHHHHHHHHHHhhh
Q 035414 8 EVEPPSPLRYLMGAVIMMIGVVL 30 (57)
Q Consensus 8 EvepP~p~rY~iGa~IMmvGVVL 30 (57)
|+-|-++...++..+.|++|+++
T Consensus 80 Di~P~t~~~~~~~~~~~~~g~~~ 102 (116)
T d1p7ba2 80 DMHPQTVYAHAIATLEIFVGMSG 102 (116)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHH
Confidence 45677888888888899888765
No 6
>d1svba1 b.1.18.4 (A:303-395) Envelope glycoprotein {Tick-borne encephalitis virus [TaxId: 11084]}
Probab=28.49 E-value=9.3 Score=22.32 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=10.6
Q ss_pred eeeEecCCchHHHH
Q 035414 5 KIVEVEPPSPLRYL 18 (57)
Q Consensus 5 ~~lEvepP~p~rY~ 18 (57)
-++|+|||-=-+||
T Consensus 68 v~IE~epPfGdS~I 81 (93)
T d1svba1 68 GFIEMQLPPGDNII 81 (93)
T ss_dssp CEEEEECCSEEEEE
T ss_pred EEEEEeCCCCccEE
Confidence 47999999765554
No 7
>d1ok8a1 b.1.18.4 (A:298-394) Envelope glycoprotein {Dengue virus type 2 [TaxId: 11060]}
Probab=26.14 E-value=12 Score=21.95 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=10.0
Q ss_pred eeeEecCCchHHHH
Q 035414 5 KIVEVEPPSPLRYL 18 (57)
Q Consensus 5 ~~lEvepP~p~rY~ 18 (57)
-++|+|||-=-+||
T Consensus 68 v~IE~epPfGdS~I 81 (97)
T d1ok8a1 68 VNIEAEPPFGDSYI 81 (97)
T ss_dssp EEEEECCCSEEEEE
T ss_pred EEEEEECCCCceEE
Confidence 47999999654443
No 8
>d1ztxe1 b.1.18.4 (E:300-400) Envelope glycoprotein {West Nile virus [TaxId: 11082]}
Probab=24.91 E-value=12 Score=22.10 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=9.9
Q ss_pred eeeEecCCchHHHH
Q 035414 5 KIVEVEPPSPLRYL 18 (57)
Q Consensus 5 ~~lEvepP~p~rY~ 18 (57)
-++|+|||-=-+||
T Consensus 72 v~IE~epPfGdS~I 85 (101)
T d1ztxe1 72 VLIELEPPFGDSYI 85 (101)
T ss_dssp EEEEEECCSEEEEE
T ss_pred EEEEEeCCCCceEE
Confidence 37999999654443
No 9
>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.67 E-value=17 Score=22.06 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=11.8
Q ss_pred CCceeeeEecCCc
Q 035414 1 MPFRKIVEVEPPS 13 (57)
Q Consensus 1 m~~r~~lEvepP~ 13 (57)
|.|.+++||.+|+
T Consensus 1 m~feHlv~IN~p~ 13 (151)
T d2ffsa1 1 MQFEHLVQVNDRT 13 (151)
T ss_dssp CCEEEEEECCCCC
T ss_pred CcceEEEecCCCC
Confidence 7899999999987
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=22.88 E-value=4.9 Score=21.89 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=13.5
Q ss_pred HHhhhheeeeehccccCCCCccc
Q 035414 26 IGVVLPVGYMMFRNKRVPSTSSY 48 (57)
Q Consensus 26 vGVVLP~~YM~frnKrv~sss~y 48 (57)
++|..-+.|+++|-+|.+....|
T Consensus 30 v~V~~~~~~~~~ryR~~~~~~~~ 52 (91)
T d1fftb2 30 IPAILMAVGFAWKYRASNKDAKY 52 (91)
T ss_dssp THHHHHHHTTTTTTTTSTTTCSS
T ss_pred HHHHHHHHhhheeeeccCCccCC
Confidence 34455557888776665544443
Done!