Query 035416
Match_columns 62
No_of_seqs 120 out of 1021
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00191 Annexin: Annexin; In 99.9 4.6E-23 1E-27 106.8 6.6 57 1-57 10-66 (66)
2 KOG0819 Annexin [Intracellular 99.9 1.1E-23 2.4E-28 136.0 3.9 61 1-61 101-161 (321)
3 smart00335 ANX Annexin repeats 99.9 2E-21 4.4E-26 97.2 6.3 53 5-57 1-53 (53)
4 KOG0819 Annexin [Intracellular 99.8 4.4E-21 9.6E-26 124.0 5.5 61 1-61 29-89 (321)
5 PF13720 Acetyltransf_11: Udp 83.6 2.1 4.7E-05 22.9 3.1 25 19-43 29-55 (83)
6 PF13043 DUF3903: Domain of un 82.8 1.2 2.6E-05 20.8 1.6 19 21-39 8-26 (40)
7 PF10788 DUF2603: Protein of u 76.6 3.2 7E-05 24.6 2.5 33 23-55 65-97 (137)
8 PF14003 YlbE: YlbE-like prote 75.6 5 0.00011 20.9 2.8 30 15-44 17-46 (65)
9 COG1043 LpxA Acyl-[acyl carrie 74.9 5.3 0.00011 26.0 3.3 26 19-44 206-233 (260)
10 PF12098 DUF3574: Protein of u 69.7 4.4 9.5E-05 22.9 1.9 19 19-37 73-91 (104)
11 PRK12461 UDP-N-acetylglucosami 65.4 11 0.00023 24.1 3.3 25 19-43 201-227 (255)
12 cd01047 ACSF Aerobic Cyclase S 64.2 12 0.00027 25.0 3.4 57 6-62 10-76 (323)
13 PF13766 ECH_C: 2-enoyl-CoA Hy 61.0 28 0.00061 19.6 4.2 48 11-58 36-91 (118)
14 PF09832 DUF2059: Uncharacteri 57.4 15 0.00033 18.1 2.4 33 10-42 8-41 (64)
15 TIGR02029 AcsF magnesium-proto 57.0 15 0.00032 24.8 2.9 57 6-62 20-86 (337)
16 PRK10969 DNA polymerase III su 53.1 35 0.00075 18.2 4.1 34 20-53 17-51 (75)
17 CHL00185 ycf59 magnesium-proto 52.0 20 0.00044 24.3 2.9 57 6-62 26-92 (351)
18 PF08587 UBA_2: Ubiquitin asso 50.7 3 6.5E-05 20.3 -0.8 29 3-31 12-41 (46)
19 PF10012 DUF2255: Uncharacteri 50.4 20 0.00043 20.6 2.4 18 19-36 79-96 (116)
20 KOG0859 Synaptobrevin/VAMP-lik 49.9 29 0.00062 22.1 3.2 34 21-54 78-111 (217)
21 PRK13654 magnesium-protoporphy 48.4 26 0.00056 23.9 3.0 57 6-62 30-96 (355)
22 PRK06443 chorismate mutase; Va 42.6 36 0.00079 21.0 2.8 16 43-58 85-100 (177)
23 PRK05289 UDP-N-acetylglucosami 42.5 42 0.00091 21.3 3.2 25 19-43 205-231 (262)
24 KOG2027 Spindle pole body prot 41.3 28 0.0006 24.0 2.3 26 21-46 98-123 (388)
25 PF12652 CotJB: CotJB protein; 39.7 31 0.00067 18.4 2.0 18 21-38 40-57 (78)
26 PF11202 PRTase_1: Phosphoribo 38.2 26 0.00056 22.9 1.8 42 1-42 125-182 (257)
27 PF13373 DUF2407_C: DUF2407 C- 38.0 36 0.00078 20.0 2.2 19 18-36 11-29 (140)
28 PF13062 DUF3924: Protein of u 37.9 48 0.001 16.6 2.3 22 20-41 13-34 (62)
29 KOG1014 17 beta-hydroxysteroid 36.7 8.3 0.00018 25.8 -0.7 46 14-59 77-124 (312)
30 PLN02508 magnesium-protoporphy 36.7 67 0.0015 21.9 3.5 57 6-62 21-92 (357)
31 PRK06041 flagellar assembly pr 33.7 1.8E+02 0.0038 20.9 5.4 53 4-58 89-151 (553)
32 cd00171 Sec7 Sec7 domain; Doma 32.6 1.2E+02 0.0025 18.4 4.8 40 4-44 45-87 (185)
33 PRK07110 polyketide biosynthes 31.7 1.3E+02 0.0029 18.7 5.9 49 11-59 192-248 (249)
34 PF09349 OHCU_decarbox: OHCU d 31.2 1.2E+02 0.0025 17.9 3.7 27 21-47 97-123 (159)
35 COG5664 Predicted secreted Zn- 30.4 96 0.0021 19.4 3.3 38 22-61 164-201 (201)
36 KOG0181 20S proteasome, regula 30.4 36 0.00078 21.7 1.5 29 2-38 77-105 (233)
37 TIGR00762 DegV EDD domain prot 29.8 34 0.00074 21.8 1.3 39 19-57 63-101 (275)
38 PF03461 TRCF: TRCF domain; I 29.5 93 0.002 16.9 2.9 28 13-40 25-52 (101)
39 PF08404 Baculo_p74_N: Baculov 29.0 23 0.00049 23.6 0.4 30 25-57 183-212 (301)
40 COG1121 ZnuC ABC-type Mn/Zn tr 29.0 88 0.0019 20.3 3.1 41 18-58 112-153 (254)
41 PF01603 B56: Protein phosphat 28.2 78 0.0017 21.6 2.9 42 10-51 137-180 (409)
42 PF05303 DUF727: Protein of un 28.2 46 0.00099 18.7 1.5 22 22-43 84-105 (108)
43 PLN02874 3-hydroxyisobutyryl-C 28.0 1.3E+02 0.0027 20.4 3.8 49 10-58 268-327 (379)
44 PF06440 DNA_pol3_theta: DNA p 27.9 70 0.0015 17.1 2.1 23 20-42 17-39 (75)
45 PF02097 Filo_VP35: Filovirida 27.7 37 0.00081 22.6 1.2 41 2-42 214-258 (321)
46 PF08529 NusA_N: NusA N-termin 27.7 1.1E+02 0.0023 17.2 3.0 26 5-37 14-39 (122)
47 PF04492 Phage_rep_O: Bacterio 26.8 9.4 0.0002 21.2 -1.4 33 27-59 11-43 (100)
48 PF06854 Phage_Gp15: Bacteriop 26.7 1.4E+02 0.003 18.3 3.5 23 20-42 108-130 (183)
49 PF03398 Ist1: Regulator of Vp 26.6 63 0.0014 19.3 2.0 25 21-45 103-127 (165)
50 PF02645 DegV: Uncharacterised 25.8 30 0.00065 22.0 0.6 39 19-57 64-103 (280)
51 PLN02851 3-hydroxyisobutyryl-C 25.6 2.3E+02 0.005 19.6 5.0 47 12-58 303-360 (407)
52 PF04967 HTH_10: HTH DNA bindi 25.5 87 0.0019 15.3 2.1 16 19-34 2-17 (53)
53 PF10849 DUF2654: Protein of u 25.3 78 0.0017 16.7 2.0 31 22-52 38-68 (70)
54 COG1986 Inosine/xanthosine tri 25.1 49 0.0011 20.4 1.3 21 15-35 6-26 (175)
55 PF08010 Phage_30_3: Bacteriop 25.0 1.6E+02 0.0034 17.7 3.4 18 17-34 82-99 (146)
56 TIGR03164 UHCUDC OHCU decarbox 24.5 73 0.0016 18.9 2.0 25 21-45 94-118 (157)
57 cd06257 DnaJ DnaJ domain or J- 23.9 38 0.00082 15.6 0.6 15 19-33 10-24 (55)
58 COG0139 HisI Phosphoribosyl-AM 23.8 8.4 0.00018 22.1 -2.0 12 42-53 63-74 (111)
59 PRK15058 cytochrome b562; Prov 23.5 79 0.0017 18.5 2.0 15 21-35 114-128 (128)
60 PF05527 DUF758: Domain of unk 23.5 1.9E+02 0.0042 17.9 3.8 48 10-58 126-174 (186)
61 TIGR01650 PD_CobS cobaltochela 23.1 1.4E+02 0.003 20.1 3.3 28 13-40 293-321 (327)
62 PF08898 DUF1843: Domain of un 22.8 56 0.0012 16.3 1.1 17 33-52 2-18 (53)
63 COG3184 Uncharacterized protei 22.4 78 0.0017 19.7 1.9 23 19-41 109-131 (183)
64 COG1298 FlhA Flagellar biosynt 22.4 1.4E+02 0.0031 22.3 3.4 41 20-60 505-546 (696)
65 PHA02745 hypothetical protein; 22.4 1.5E+02 0.0032 19.5 3.1 26 2-31 236-262 (265)
66 PF04682 Herpes_BTRF1: Herpesv 22.0 81 0.0018 20.6 2.0 35 21-56 122-156 (256)
67 PHA03102 Small T antigen; Revi 21.9 71 0.0015 19.1 1.6 23 10-32 6-30 (153)
68 KOG2616 Pyridoxalphosphate-dep 21.8 1.9E+02 0.0042 18.9 3.6 45 7-51 103-147 (266)
69 PRK13430 F0F1 ATP synthase sub 21.7 86 0.0019 20.2 2.1 21 19-39 212-232 (271)
70 PF05355 Apo-CII: Apolipoprote 21.7 48 0.001 17.8 0.8 49 13-61 20-78 (78)
71 KOG2035 Replication factor C, 21.5 2.4E+02 0.0053 19.2 4.1 23 35-57 207-229 (351)
72 KOG3436 60S ribosomal protein 21.5 1.8E+02 0.004 16.9 3.2 34 9-44 52-85 (123)
73 PRK13798 putative OHCU decarbo 20.9 95 0.0021 18.7 2.0 25 21-45 99-123 (166)
74 TIGR03180 UraD_2 OHCU decarbox 20.7 91 0.002 18.6 1.9 26 21-46 94-119 (158)
75 PRK13434 F0F1 ATP synthase sub 20.6 90 0.0019 18.7 1.9 20 19-38 116-135 (184)
76 PF04415 DUF515: Protein of un 20.4 1.5E+02 0.0033 20.7 3.1 33 21-53 130-162 (416)
77 smart00271 DnaJ DnaJ molecular 20.1 50 0.0011 15.5 0.6 20 14-33 6-25 (60)
No 1
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.89 E-value=4.6e-23 Score=106.83 Aligned_cols=57 Identities=40% Similarity=0.765 Sum_probs=54.4
Q ss_pred CCcccCCHHHHHHHHhhCCHHHHHHHHHHHHhccCccHHHHHhhcccHHHHHHHHHh
Q 035416 1 MKGLGTDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSETSGNYRAFLLSL 57 (62)
Q Consensus 1 mkg~gtde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~l 57 (62)
|+|+|||+..+++|+++||+.|+.+|+++|++.||++|.++|++++||+|+++|++|
T Consensus 10 ~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 10 LKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred ccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999986
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-23 Score=136.02 Aligned_cols=61 Identities=41% Similarity=0.768 Sum_probs=59.5
Q ss_pred CCcccCCHHHHHHHHhhCCHHHHHHHHHHHHhccCccHHHHHhhcccHHHHHHHHHhcCCC
Q 035416 1 MKGLGTDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSETSGNYRAFLLSLLGPK 61 (62)
Q Consensus 1 mkg~gtde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~l~~~~ 61 (62)
|||+||||++||+|+|+|+|.||.+|+++|+..|+++|++||.++|||+|+++|++|+++.
T Consensus 101 mkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~ 161 (321)
T KOG0819|consen 101 MKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGN 161 (321)
T ss_pred HhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999999999999874
No 3
>smart00335 ANX Annexin repeats.
Probab=99.86 E-value=2e-21 Score=97.17 Aligned_cols=53 Identities=43% Similarity=0.797 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHhhCCHHHHHHHHHHHHhccCccHHHHHhhcccHHHHHHHHHh
Q 035416 5 GTDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSETSGNYRAFLLSL 57 (62)
Q Consensus 5 gtde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~l 57 (62)
||||..|++|+++|++.|+.+|+++|++.||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999875
No 4
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.4e-21 Score=124.00 Aligned_cols=61 Identities=33% Similarity=0.660 Sum_probs=59.4
Q ss_pred CCcccCCHHHHHHHHhhCCHHHHHHHHHHHHhccCccHHHHHhhcccHHHHHHHHHhcCCC
Q 035416 1 MKGLGTDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSETSGNYRAFLLSLLGPK 61 (62)
Q Consensus 1 mkg~gtde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~l~~~~ 61 (62)
|||+||||.++|+||++|+|.|++.|+++|+.+||++|.+++++++||+|++++++|..+|
T Consensus 29 ~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p 89 (321)
T KOG0819|consen 29 MKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPP 89 (321)
T ss_pred HhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCH
Confidence 7999999999999999999999999999999999999999999999999999999998775
No 5
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=83.62 E-value=2.1 Score=22.88 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhccC--ccHHHHHh
Q 035416 19 TEIDMQYIKAEYSKKYK--KTLTDAVH 43 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y~--~~L~~~i~ 43 (62)
++.++.+|+++|+..|. .++.+.++
T Consensus 29 s~~~i~~l~~ayr~l~~~~~~~~~a~~ 55 (83)
T PF13720_consen 29 SKEEISALRRAYRILFRSGLTLEEALE 55 (83)
T ss_dssp -HHHHHHHHHHHHHHHTSSS-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 78999999999999994 34555553
No 6
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=82.82 E-value=1.2 Score=20.76 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhccCccHH
Q 035416 21 IDMQYIKAEYSKKYKKTLT 39 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~ 39 (62)
-.+++++...+++||++|.
T Consensus 8 lai~kvr~eckrrfgktll 26 (40)
T PF13043_consen 8 LAIQKVRAECKRRFGKTLL 26 (40)
T ss_pred HHHHHHHHHHHHHhchhhh
Confidence 3577889999999999874
No 7
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=76.58 E-value=3.2 Score=24.55 Aligned_cols=33 Identities=6% Similarity=0.212 Sum_probs=29.5
Q ss_pred HHHHHHHHHhccCccHHHHHhhcccHHHHHHHH
Q 035416 23 MQYIKAEYSKKYKKTLTDAVHSETSGNYRAFLL 55 (62)
Q Consensus 23 l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll 55 (62)
+..+++++++.|.-.|+++|.+.+-=||.+++.
T Consensus 65 i~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~ 97 (137)
T PF10788_consen 65 IESLKNAQKENFELKLEKDILQQMPIDFEDVWA 97 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 457899999999999999999999999999654
No 8
>PF14003 YlbE: YlbE-like protein
Probab=75.65 E-value=5 Score=20.90 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=26.9
Q ss_pred HhhCCHHHHHHHHHHHHhccCccHHHHHhh
Q 035416 15 IVTRTEIDMQYIKAEYSKKYKKTLTDAVHS 44 (62)
Q Consensus 15 l~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~ 44 (62)
..+|.|.++.....++...|++..-+.|..
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek 46 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEK 46 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456999999999999999999999998874
No 9
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=74.86 E-value=5.3 Score=25.99 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHhcc--CccHHHHHhh
Q 035416 19 TEIDMQYIKAEYSKKY--KKTLTDAVHS 44 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y--~~~L~~~i~~ 44 (62)
+..++.+|+++|+..| +.++.+.++.
T Consensus 206 ~~e~i~alr~ayk~lfr~~~~~~e~~~~ 233 (260)
T COG1043 206 SREEIHALRKAYKLLFRSGLTLREALEE 233 (260)
T ss_pred CHHHHHHHHHHHHHHeeCCCCHHHHHHH
Confidence 6789999999999999 5566666653
No 10
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=69.74 E-value=4.4 Score=22.87 Aligned_cols=19 Identities=16% Similarity=0.560 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhccCcc
Q 035416 19 TEIDMQYIKAEYSKKYKKT 37 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y~~~ 37 (62)
+...+.+|+++|++.|+..
T Consensus 73 ~~~~i~~Ir~~Yk~rF~Qe 91 (104)
T PF12098_consen 73 AEARIEAIREAYKQRFQQE 91 (104)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3578999999999999764
No 11
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=65.37 E-value=11 Score=24.06 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhccCc--cHHHHHh
Q 035416 19 TEIDMQYIKAEYSKKYKK--TLTDAVH 43 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y~~--~L~~~i~ 43 (62)
++.++..++++|+..|.+ ++.+.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
T PRK12461 201 SSRAIRALKRAYKIIYRSGLSVQQAVA 227 (255)
T ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 789999999999999965 5566553
No 12
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=64.22 E-value=12 Score=25.04 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=39.6
Q ss_pred CCHHHHHHHHhhCCHHHHHHHHHHHHhccCcc----------HHHHHhhcccHHHHHHHHHhcCCCC
Q 035416 6 TDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKT----------LTDAVHSETSGNYRAFLLSLLGPKY 62 (62)
Q Consensus 6 tde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~----------L~~~i~~~~sG~~~~~ll~l~~~~~ 62 (62)
||-+.+-.+=++....++.++.+.++..|++. ..+.+..++.-.|-+.|..-|.+|+
T Consensus 10 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEF 76 (323)
T cd01047 10 TDFDEMAALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEF 76 (323)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhh
Confidence 66666666666666789999999999888753 2233555666677777777776653
No 13
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=61.05 E-value=28 Score=19.63 Aligned_cols=48 Identities=8% Similarity=0.184 Sum_probs=36.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhccCccHHHHHhhcc--------cHHHHHHHHHhc
Q 035416 11 LVRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSET--------SGNYRAFLLSLL 58 (62)
Q Consensus 11 Li~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~--------sG~~~~~ll~l~ 58 (62)
..+.|.++||.-+......+++-.+.+|.+.++.|. .|||...+-+++
T Consensus 36 ~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 36 TLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 346777889999999999999999999999887754 377877777665
No 14
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=57.43 E-value=15 Score=18.08 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=23.7
Q ss_pred HHHHHHhhC-CHHHHHHHHHHHHhccCccHHHHH
Q 035416 10 TLVRVIVTR-TEIDMQYIKAEYSKKYKKTLTDAV 42 (62)
Q Consensus 10 ~Li~il~~r-s~~~l~~i~~~Y~~~y~~~L~~~i 42 (62)
.+.++...+ ++.++..+...|..-.|+.+.+.-
T Consensus 8 ~~~~~y~~~ft~~El~~i~~FY~Sp~Gqk~~~~~ 41 (64)
T PF09832_consen 8 QMAPIYAEHFTEEELDAILAFYESPLGQKIVAKE 41 (64)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCHHhHHHHHHh
Confidence 345555553 889999999999988888776543
No 15
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=57.02 E-value=15 Score=24.79 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=38.2
Q ss_pred CCHHHHHHHHhhCCHHHHHHHHHHHHhccCcc-------HH---HHHhhcccHHHHHHHHHhcCCCC
Q 035416 6 TDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKT-------LT---DAVHSETSGNYRAFLLSLLGPKY 62 (62)
Q Consensus 6 tde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~-------L~---~~i~~~~sG~~~~~ll~l~~~~~ 62 (62)
||-+.+-++=++....++.++.+.++..|++. .. +.+..++.-.|-+.|..-|.+|+
T Consensus 20 TDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEF 86 (337)
T TIGR02029 20 TDFEEMANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEF 86 (337)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhh
Confidence 56666666656666789999999999887653 21 22444555557777777776653
No 16
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=53.11 E-value=35 Score=18.24 Aligned_cols=34 Identities=18% Similarity=0.482 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhccCccH-HHHHhhcccHHHHHH
Q 035416 20 EIDMQYIKAEYSKKYKKTL-TDAVHSETSGNYRAF 53 (62)
Q Consensus 20 ~~~l~~i~~~Y~~~y~~~L-~~~i~~~~sG~~~~~ 53 (62)
+.++.+-.-+|+++|++.. .+.|..+..-+++..
T Consensus 17 nvDLaASgVafkER~n~pvi~e~ve~eqPe~lR~y 51 (75)
T PRK10969 17 NVDLAASGVAFKERYNMPVIAEAVEREQPEHLRSY 51 (75)
T ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHH
Confidence 4677777889999999984 455666676665553
No 17
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=51.96 E-value=20 Score=24.33 Aligned_cols=57 Identities=14% Similarity=0.267 Sum_probs=37.7
Q ss_pred CCHHHHHHHHhhCCHHHHHHHHHHHHhccCcc-------HHH---HHhhcccHHHHHHHHHhcCCCC
Q 035416 6 TDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKT-------LTD---AVHSETSGNYRAFLLSLLGPKY 62 (62)
Q Consensus 6 tde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~-------L~~---~i~~~~sG~~~~~ll~l~~~~~ 62 (62)
||-+.+-.+=++....++.++.+.++..|++. ... .+..++.-.|-+.|..-|.+|+
T Consensus 26 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEF 92 (351)
T CHL00185 26 TDFDEMANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEF 92 (351)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhh
Confidence 56666666666667789999999999887653 222 2334444557777776666553
No 18
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=50.74 E-value=3 Score=20.29 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=15.9
Q ss_pred cccCCHHHHHHHHhhCCH-HHHHHHHHHHH
Q 035416 3 GLGTDDTTLVRVIVTRTE-IDMQYIKAEYS 31 (62)
Q Consensus 3 g~gtde~~Li~il~~rs~-~~l~~i~~~Y~ 31 (62)
-+|-+.+-+++.|-+..+ .+-.+|+.||.
T Consensus 12 tMGY~kdeI~eaL~~~~~~~~~neIkDAY~ 41 (46)
T PF08587_consen 12 TMGYDKDEIYEALESSEPSPQSNEIKDAYL 41 (46)
T ss_dssp TT---HHHHHHHCCSSS------SSCCHHH
T ss_pred HhCCCHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 457788888888877544 77888888884
No 19
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.44 E-value=20 Score=20.62 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhccCc
Q 035416 19 TEIDMQYIKAEYSKKYKK 36 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y~~ 36 (62)
++.....|-.+|+.+|+.
T Consensus 79 d~~~~~~iD~AYr~KY~~ 96 (116)
T PF10012_consen 79 DPALNDAIDAAYRAKYGG 96 (116)
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 567788999999999988
No 20
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.92 E-value=29 Score=22.06 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhccCccHHHHHhhcccHHHHHHH
Q 035416 21 IDMQYIKAEYSKKYKKTLTDAVHSETSGNYRAFL 54 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~l 54 (62)
+-+..|++.|.+.||.....++.-...-.|.+.|
T Consensus 78 aFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL 111 (217)
T KOG0859|consen 78 AFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVL 111 (217)
T ss_pred HHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHH
Confidence 7889999999999999987777654444454433
No 21
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=48.36 E-value=26 Score=23.87 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=38.0
Q ss_pred CCHHHHHHHHhhCCHHHHHHHHHHHHhccCcc-------HHH---HHhhcccHHHHHHHHHhcCCCC
Q 035416 6 TDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKT-------LTD---AVHSETSGNYRAFLLSLLGPKY 62 (62)
Q Consensus 6 tde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~-------L~~---~i~~~~sG~~~~~ll~l~~~~~ 62 (62)
||-+.+-.+=++....++.++.+.++..|++. ... .+..++.-.|-+.|..-|.+|+
T Consensus 30 TDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEF 96 (355)
T PRK13654 30 TDFDAMAKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEF 96 (355)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhh
Confidence 56666666666667789999999999887653 222 2344444557777777666653
No 22
>PRK06443 chorismate mutase; Validated
Probab=42.60 E-value=36 Score=21.02 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=12.3
Q ss_pred hhcccHHHHHHHHHhc
Q 035416 43 HSETSGNYRAFLLSLL 58 (62)
Q Consensus 43 ~~~~sG~~~~~ll~l~ 58 (62)
.-..||+|+.+..+|.
T Consensus 85 ~i~~sg~y~~~~~sl~ 100 (177)
T PRK06443 85 NIEVSGDYDSLILSLG 100 (177)
T ss_pred eeeeecchHHHHHHHH
Confidence 4478999999887764
No 23
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=42.51 E-value=42 Score=21.29 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHhccCc--cHHHHHh
Q 035416 19 TEIDMQYIKAEYSKKYKK--TLTDAVH 43 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y~~--~L~~~i~ 43 (62)
++.++..|+++|+..|.+ ++++.++
T Consensus 205 ~~~~~~~i~~a~~~~~~~~~~~~~~~~ 231 (262)
T PRK05289 205 SREEIHALRRAYKLLYRSGLTLEEALE 231 (262)
T ss_pred CHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 789999999999999854 5566553
No 24
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=41.32 E-value=28 Score=23.97 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhccCccHHHHHhhcc
Q 035416 21 IDMQYIKAEYSKKYKKTLTDAVHSET 46 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~~~i~~~~ 46 (62)
.+|..|++.|-.+||+++........
T Consensus 98 pEL~~i~~~f~~kYGk~f~~~a~~l~ 123 (388)
T KOG2027|consen 98 PELREIRDLFVKKYGKEFVKAAIELR 123 (388)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 79999999999999999998877664
No 25
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=39.68 E-value=31 Score=18.38 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhccCccH
Q 035416 21 IDMQYIKAEYSKKYKKTL 38 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L 38 (62)
.++..+++.|.+.||=-.
T Consensus 40 ~~~~~l~~~Ye~~yGPLt 57 (78)
T PF12652_consen 40 KQRKQLKKEYEKRYGPLT 57 (78)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 577889999999998533
No 26
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=38.21 E-value=26 Score=22.86 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=32.2
Q ss_pred CCcccCCHHHHHHHHhhCCHH----------------HHHHHHHHHHhccCccHHHHH
Q 035416 1 MKGLGTDDTTLVRVIVTRTEI----------------DMQYIKAEYSKKYKKTLTDAV 42 (62)
Q Consensus 1 mkg~gtde~~Li~il~~rs~~----------------~l~~i~~~Y~~~y~~~L~~~i 42 (62)
+++-|.|+++|-.|+..|.+. ++.+-.+.|.+.||..+..++
T Consensus 125 IRdRGID~~AL~~I~~~H~~~~ivFVDGWTGKGaI~~eL~~al~~~~~~~~~~~~~~L 182 (257)
T PF11202_consen 125 IRDRGIDENALRYILARHPPESIVFVDGWTGKGAITRELKKALAAFNARYGTRLSPDL 182 (257)
T ss_pred ecCCCCCHHHHHHHHHhCCCcceEEEecCccccHHHHHHHHHHHHHHhhcCCCCCCCe
Confidence 468899999999999887654 667777788888886665544
No 27
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=38.05 E-value=36 Score=20.03 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHhccCc
Q 035416 18 RTEIDMQYIKAEYSKKYKK 36 (62)
Q Consensus 18 rs~~~l~~i~~~Y~~~y~~ 36 (62)
=|++|+..++..|++.|+.
T Consensus 11 FS~~eI~~LR~QF~~~~~~ 29 (140)
T PF13373_consen 11 FSPEEIQDLRSQFHSIYGD 29 (140)
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 4899999999999999983
No 28
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=37.94 E-value=48 Score=16.63 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhccCccHHHH
Q 035416 20 EIDMQYIKAEYSKKYKKTLTDA 41 (62)
Q Consensus 20 ~~~l~~i~~~Y~~~y~~~L~~~ 41 (62)
...+..++++|+...|.++.+.
T Consensus 13 aekl~llkqayqkktgatises 34 (62)
T PF13062_consen 13 AEKLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHHHhhcCCccchh
Confidence 3567889999999999877653
No 29
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=36.73 E-value=8.3 Score=25.76 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=31.8
Q ss_pred HHhhCCHHHHHHHHHHHHhccCccHHHHHhhcccHH--HHHHHHHhcC
Q 035416 14 VIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSETSGN--YRAFLLSLLG 59 (62)
Q Consensus 14 il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~--~~~~ll~l~~ 59 (62)
+|++|+..-|.+++++=.+.|+....-.+-+=++|+ |+++.-.|..
T Consensus 77 vLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~ 124 (312)
T KOG1014|consen 77 VLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG 124 (312)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC
Confidence 477899999999999999999844432223334455 7776665544
No 30
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=36.65 E-value=67 Score=21.95 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=35.8
Q ss_pred CCHHHHHHH-----HhhCCHHHHHHHHHHHHhccCcc----------HHHHHhhcccHHHHHHHHHhcCCCC
Q 035416 6 TDDTTLVRV-----IVTRTEIDMQYIKAEYSKKYKKT----------LTDAVHSETSGNYRAFLLSLLGPKY 62 (62)
Q Consensus 6 tde~~Li~i-----l~~rs~~~l~~i~~~Y~~~y~~~----------L~~~i~~~~sG~~~~~ll~l~~~~~ 62 (62)
||-+.+-.. =++....++.++.+.++..|++. -.+.+..++.-.|-+.|..-|.+|+
T Consensus 21 TDF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEF 92 (357)
T PLN02508 21 TDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEF 92 (357)
T ss_pred ccHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhc
Confidence 455555433 33445579999999999887653 1123555555567777777776654
No 31
>PRK06041 flagellar assembly protein J; Reviewed
Probab=33.72 E-value=1.8e+02 Score=20.86 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=35.9
Q ss_pred ccCCHHHHHHHHhhCCHHHHHHHHHHHHh------ccCccHHHHHhh----cccHHHHHHHHHhc
Q 035416 4 LGTDDTTLVRVIVTRTEIDMQYIKAEYSK------KYKKTLTDAVHS----ETSGNYRAFLLSLL 58 (62)
Q Consensus 4 ~gtde~~Li~il~~rs~~~l~~i~~~Y~~------~y~~~L~~~i~~----~~sG~~~~~ll~l~ 58 (62)
.|.+-..+++.+..+ .+...+...+++ .+|.|+.++++. -+|-.|++++..++
T Consensus 89 sg~~~~eifr~la~~--~~yG~~s~E~~~Iv~~v~~~g~d~~~Al~~~a~~tPS~~l~~fl~~l~ 151 (553)
T PRK06041 89 TDIDRDEIFRILSEK--EEYGALAKEFRKIYVLVDKWNYSLAEACRFVAKRTPSELFADFLDRLA 151 (553)
T ss_pred CCCCHHHHHHHHhCc--hhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 466777778888733 335566655554 489999998863 46677888776654
No 32
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=32.57 E-value=1.2e+02 Score=18.37 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=31.8
Q ss_pred ccCCHHHHHHHHhhCCHHHHHHHHHHHHhcc---CccHHHHHhh
Q 035416 4 LGTDDTTLVRVIVTRTEIDMQYIKAEYSKKY---KKTLTDAVHS 44 (62)
Q Consensus 4 ~gtde~~Li~il~~rs~~~l~~i~~~Y~~~y---~~~L~~~i~~ 44 (62)
-|.+...+-+.|+.+.+ .-..+.++|-+.+ |.++..+++.
T Consensus 45 ~~l~k~~ig~~L~~~~~-~~~~vL~~y~~~f~f~~~~i~~ALR~ 87 (185)
T cd00171 45 EGLNKKAIGEYLGENNE-FNSLVLHEFVDLFDFSGLRLDEALRK 87 (185)
T ss_pred CCCCHHHHHHHHcCCch-HHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 46788899999998764 4467888888876 8899998885
No 33
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=31.73 E-value=1.3e+02 Score=18.73 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=35.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhccCccHHHHHhhcc--------cHHHHHHHHHhcC
Q 035416 11 LVRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSET--------SGNYRAFLLSLLG 59 (62)
Q Consensus 11 Li~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~--------sG~~~~~ll~l~~ 59 (62)
+.+-+...++.-+..+|+...+....++.+.+..+. +.+++..+-+|-+
T Consensus 192 ~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~~ 248 (249)
T PRK07110 192 LARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLYG 248 (249)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhcC
Confidence 345566778888999999998888888888776553 5666666665543
No 34
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=31.22 E-value=1.2e+02 Score=17.94 Aligned_cols=27 Identities=7% Similarity=0.270 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhccCccHHHHHhhccc
Q 035416 21 IDMQYIKAEYSKKYKKTLTDAVHSETS 47 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~~~i~~~~s 47 (62)
.++..+.++|+++||-...-.++..+.
T Consensus 97 ~~L~~lN~~Y~~kFGf~Fvi~~~g~s~ 123 (159)
T PF09349_consen 97 AELAALNQAYEEKFGFPFVICARGRSA 123 (159)
T ss_dssp HHHHHHHHHHHHHHSS-----GTT--H
T ss_pred HHHHHHHHHHHHHcCCceEeecCCCCH
Confidence 467788899999999998888776544
No 35
>COG5664 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=96 Score=19.42 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhccCccHHHHHhhcccHHHHHHHHHhcCCC
Q 035416 22 DMQYIKAEYSKKYKKTLTDAVHSETSGNYRAFLLSLLGPK 61 (62)
Q Consensus 22 ~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~l~~~~ 61 (62)
.+.+|.++|++. +++. +..+---.|+.++++++|+.++
T Consensus 164 rl~~is~~qrqk-~rdF-Dr~E~s~GGnv~qLIl~l~ng~ 201 (201)
T COG5664 164 RLGAISAEQRQK-GRDF-DRVELSSGGNVQQLILALVNGP 201 (201)
T ss_pred HHHHHHHHHHHh-cccc-chhhhCCCCcHHHHHHHHhcCC
Confidence 344555555443 3333 2222223489999999999875
No 36
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=30.41 E-value=36 Score=21.66 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=21.0
Q ss_pred CcccCCHHHHHHHHhhCCHHHHHHHHHHHHhccCccH
Q 035416 2 KGLGTDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKTL 38 (62)
Q Consensus 2 kg~gtde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~L 38 (62)
.|+|.|...|+..-+ +|.+.|...||...
T Consensus 77 SGmgpD~RvlV~~~r--------kiAe~Yy~vY~e~~ 105 (233)
T KOG0181|consen 77 SGMGPDYRVLVHKSR--------KIAEQYYRVYGEPI 105 (233)
T ss_pred ecCCCceeehhhHHH--------HHHHHHHHHhcCCC
Confidence 477888777776543 67778988888764
No 37
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=29.77 E-value=34 Score=21.76 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhccCccHHHHHhhcccHHHHHHHHHh
Q 035416 19 TEIDMQYIKAEYSKKYKKTLTDAVHSETSGNYRAFLLSL 57 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~l 57 (62)
|+.++.+....+.+.|..=+.=.|.+.+||.|+.+..+.
T Consensus 63 s~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa 101 (275)
T TIGR00762 63 SPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAA 101 (275)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHH
Confidence 445666666666666655566677899999999977653
No 38
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=29.47 E-value=93 Score=16.89 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=19.2
Q ss_pred HHHhhCCHHHHHHHHHHHHhccCccHHH
Q 035416 13 RVIVTRTEIDMQYIKAEYSKKYKKTLTD 40 (62)
Q Consensus 13 ~il~~rs~~~l~~i~~~Y~~~y~~~L~~ 40 (62)
++-..++..++..++..-..+||..-..
T Consensus 25 rl~~~~~~~el~~l~~El~DRFG~~P~e 52 (101)
T PF03461_consen 25 RLASAESEEELEDLREELIDRFGPLPEE 52 (101)
T ss_dssp HHHC--SHHHHHHHHHHHHHHH-S--HH
T ss_pred HHhhCCCHHHHHHHHHHHHHHcCCCcHH
Confidence 4444588999999999999999987653
No 39
>PF08404 Baculo_p74_N: Baculoviridae P74 N-terminal; InterPro: IPR013613 This domain is found at the N terminus of P74 occlusion-derived virus (ODV) envelope proteins which are required for oral infectivity. The envelope proteins are found in baculoviruses which are insect pathogens. The C terminus of P74 is anchored to the membrane whereas the N terminus is exposed to the virion surface. Furthermore P74 is unusual for a virus envelope protein as it lacks an N-terminal localisation signal sequence []. Also see IPR007663 from INTERPRO.
Probab=29.02 E-value=23 Score=23.65 Aligned_cols=30 Identities=13% Similarity=0.399 Sum_probs=19.2
Q ss_pred HHHHHHHhccCccHHHHHhhcccHHHHHHHHHh
Q 035416 25 YIKAEYSKKYKKTLTDAVHSETSGNYRAFLLSL 57 (62)
Q Consensus 25 ~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~l 57 (62)
..-++|.++||++|.+ ..++-.+-+.++..
T Consensus 183 ~fN~aYCrrFgr~~~n---~~C~~~W~E~ligf 212 (301)
T PF08404_consen 183 EFNKAYCRRFGRSLDN---GGCSQQWWEKLIGF 212 (301)
T ss_pred eehHHHHHHHhHhhcC---CCcchhHHHHhhhh
Confidence 3457999999999984 55554433333333
No 40
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=29.00 E-value=88 Score=20.27 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhccCccHHHHHhhccc-HHHHHHHHHhc
Q 035416 18 RTEIDMQYIKAEYSKKYKKTLTDAVHSETS-GNYRAFLLSLL 58 (62)
Q Consensus 18 rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~s-G~~~~~ll~l~ 58 (62)
.+..+.+++.++-++-=-.++.+.--.++| |.+|++++|-+
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 355677888888777655667666667888 67999998754
No 41
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=28.23 E-value=78 Score=21.57 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=30.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhccCcc--HHHHHhhcccHHHH
Q 035416 10 TLVRVIVTRTEIDMQYIKAEYSKKYKKT--LTDAVHSETSGNYR 51 (62)
Q Consensus 10 ~Li~il~~rs~~~l~~i~~~Y~~~y~~~--L~~~i~~~~sG~~~ 51 (62)
.|++.+-|.++.|+..++..+.+.|++- +...|+.....-|.
T Consensus 137 ~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~ 180 (409)
T PF01603_consen 137 KLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFY 180 (409)
T ss_dssp HHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566677789999999999999999853 55556555444444
No 42
>PF05303 DUF727: Protein of unknown function (DUF727); InterPro: IPR007967 This family consists of several uncharacterised eukaryotic proteins of unknown function.; PDB: 1SGO_A.
Probab=28.17 E-value=46 Score=18.68 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhccCccHHHHHh
Q 035416 22 DMQYIKAEYSKKYKKTLTDAVH 43 (62)
Q Consensus 22 ~l~~i~~~Y~~~y~~~L~~~i~ 43 (62)
=|..|.-.|++.||..|.+.+.
T Consensus 84 LL~~iSP~fr~~F~~~L~~kL~ 105 (108)
T PF05303_consen 84 LLDSISPLFRKRFGEKLSQKLE 105 (108)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHH
Confidence 4567778888888888877664
No 43
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=27.99 E-value=1.3e+02 Score=20.37 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=36.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhccCccHHHHHhhc--------c---cHHHHHHHHHhc
Q 035416 10 TLVRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSE--------T---SGNYRAFLLSLL 58 (62)
Q Consensus 10 ~Li~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~--------~---sG~~~~~ll~l~ 58 (62)
.+.+.|...++.-+...++.+++..+.++.+.+..+ . ++||+..+-+.+
T Consensus 268 ~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Afl 327 (379)
T PLN02874 268 ETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALV 327 (379)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEE
Confidence 566778888999999999999887777888777654 1 567777666554
No 44
>PF06440 DNA_pol3_theta: DNA polymerase III, theta subunit; InterPro: IPR009052 This entry represents the theta subunit of DNA polymerase III from bacteria, whose core structure consists of an irregular array of three helices []. DNA polymerase III (Pol III) is the primary enzyme responsible for replication of Escherichia coli chromosomal DNA. The holoenzyme consists of 17 proteins and contains two core polymerases. The Pol III catalytic core has three tightly associated subunits: alpha, epsilon and theta. The alpha subunit is responsible for the DNA polymerase activity, while the epsilon subunit is the 3'-5' proofreading exonuclease. The epsilon subunit binds to both the alpha and theta subunits in the linear order alpha-epsilon-theta. The theta subunit is the smallest, and may act to enhance the proofreading activity of epsilon, especially under extreme conditions []. This entry also includes a homologue of polymerase III theta called HOT (homologue of theta) from Bacteriophage P1. HOT contains three alpha-helices, as reported for theta, but the folding topology of the two is different, which could account for the suggested greater heat stability of HOT as compared to theta [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1SE7_A 2IDO_D 2AE9_A 1DU2_A 2XY8_B 2AXD_S.
Probab=27.92 E-value=70 Score=17.07 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhccCccHHHHH
Q 035416 20 EIDMQYIKAEYSKKYKKTLTDAV 42 (62)
Q Consensus 20 ~~~l~~i~~~Y~~~y~~~L~~~i 42 (62)
|.++.+-.-+|+++|+.+...+.
T Consensus 17 nvDLaAsgVaykER~nmpViae~ 39 (75)
T PF06440_consen 17 NVDLAASGVAYKERYNMPVIAEQ 39 (75)
T ss_dssp HHHHHHHHHHHHHHCTS-S-HHH
T ss_pred HHHHHHHHHHHHHHhCCcccHHH
Confidence 56777788899999998876554
No 45
>PF02097 Filo_VP35: Filoviridae VP35; InterPro: IPR002953 The filoviridae are a group of viruses that cause haemorrhagic fevers with a high mortality rate. The family currently contains three viruses: Ebola virus sp., Lake Victoria marburgvirus and Reston ebolavirus, named after their corresponding outbreak regions. They possess negative-stranded RNA genomes, which encode at least 7 proteins. The VP35 protein is found in the genomes of all filoviruses. Its function is presently unknown, but it is thought to share the function of the phosphorylated proteins (polymerase subunits) of rhabdoviruses and paramyxoviruses due to its position in the genome. There is no evidence however, to suggest that VP35 is phosphorylated [].; PDB: 3KS8_D 3L2A_A 3KS4_A 3L28_E 3L25_D 3FKE_B 3L26_A 3L27_D 3L29_B.
Probab=27.75 E-value=37 Score=22.63 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=28.0
Q ss_pred CcccCCHHHHHHHHhh--CCHHHHHHHHHHHHhcc--CccHHHHH
Q 035416 2 KGLGTDDTTLVRVIVT--RTEIDMQYIKAEYSKKY--KKTLTDAV 42 (62)
Q Consensus 2 kg~gtde~~Li~il~~--rs~~~l~~i~~~Y~~~y--~~~L~~~i 42 (62)
-|+||.-..|+.++|. |++..++.+-..|++.. |.+-.-+|
T Consensus 214 pG~~TAFHqLvqvI~kvgkD~~~Ldv~haeFq~~LaeGdS~q~Al 258 (321)
T PF02097_consen 214 PGFGTAFHQLVQVICKVGKDNHDLDVIHAEFQASLAEGDSPQCAL 258 (321)
T ss_dssp SSSSBHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHH
T ss_pred CCCCchHHHHHHHHHHHcccchHHHHHHHHHHHHHhcCCcchhHH
Confidence 4889999999988775 78888888888877653 44444443
No 46
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=27.68 E-value=1.1e+02 Score=17.25 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHhhCCHHHHHHHHHHHHhccCcc
Q 035416 5 GTDDTTLVRVIVTRTEIDMQYIKAEYSKKYKKT 37 (62)
Q Consensus 5 gtde~~Li~il~~rs~~~l~~i~~~Y~~~y~~~ 37 (62)
|.+...++++|- .++..+|++.||.+
T Consensus 14 ~i~~e~v~~ale-------~al~~a~kK~~~~~ 39 (122)
T PF08529_consen 14 GIDKEVVIEALE-------EALIKAYKKKYGPE 39 (122)
T ss_dssp TB-HHHHHHHHH-------HHHHHHHHCCTTSS
T ss_pred CcCHHHHHHHHH-------HHHHHHHHHhhCCC
Confidence 556777777775 37888899988754
No 47
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=26.82 E-value=9.4 Score=21.23 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=17.5
Q ss_pred HHHHHhccCccHHHHHhhcccHHHHHHHHHhcC
Q 035416 27 KAEYSKKYKKTLTDAVHSETSGNYRAFLLSLLG 59 (62)
Q Consensus 27 ~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~l~~ 59 (62)
.+=|-+.++.-|++.+..+++|.=.+.+++++.
T Consensus 11 ~~GytriaNelld~l~~~dls~rq~ki~~ai~R 43 (100)
T PF04492_consen 11 DDGYTRIANELLDALLRADLSGRQLKILLAIIR 43 (100)
T ss_pred cCCeeecHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 334444444444444456666665566666554
No 48
>PF06854 Phage_Gp15: Bacteriophage Gp15 protein; InterPro: IPR009660 This entry describes Gp15 from Bacteriophage A500 (Listeria phage A500), related proteins in other bacteriophage, and prophage regions of bacterial genomes. The function is unknown.
Probab=26.75 E-value=1.4e+02 Score=18.31 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhccCccHHHHH
Q 035416 20 EIDMQYIKAEYSKKYKKTLTDAV 42 (62)
Q Consensus 20 ~~~l~~i~~~Y~~~y~~~L~~~i 42 (62)
+.+-..|-.+|.+-||.+|.+.+
T Consensus 108 ~~Da~~IyasF~~~YgIdL~~~~ 130 (183)
T PF06854_consen 108 EQDADYIYASFLQQYGIDLIEEQ 130 (183)
T ss_pred HHhHHHHHHHHHHHhCccHHHhc
Confidence 35777899999999999996654
No 49
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=26.57 E-value=63 Score=19.30 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhccCccHHHHHhhc
Q 035416 21 IDMQYIKAEYSKKYKKTLTDAVHSE 45 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~~~i~~~ 45 (62)
.++..|++.+..+||++......+.
T Consensus 103 pEL~~vr~~l~~kyG~~f~~~a~~~ 127 (165)
T PF03398_consen 103 PELQEVRKQLAEKYGKEFVEAAMEN 127 (165)
T ss_dssp CCHHHHHHHHHCCC-HHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhCHHHHHHHHHh
Confidence 6899999999999999998877664
No 50
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=25.76 E-value=30 Score=22.03 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=24.0
Q ss_pred CHHHHHHHHHH-HHhccCccHHHHHhhcccHHHHHHHHHh
Q 035416 19 TEIDMQYIKAE-YSKKYKKTLTDAVHSETSGNYRAFLLSL 57 (62)
Q Consensus 19 s~~~l~~i~~~-Y~~~y~~~L~~~i~~~~sG~~~~~ll~l 57 (62)
++.++..+.+. ..+.|..=|.=.+.+.+||.|+.+..+.
T Consensus 64 s~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa 103 (280)
T PF02645_consen 64 SPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAA 103 (280)
T ss_dssp -HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHH
Confidence 34455444444 3346766677778899999999987653
No 51
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=25.59 E-value=2.3e+02 Score=19.55 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHHHhhCCHHHHHHHHHHHHhccCccHHHHHhhcc-----------cHHHHHHHHHhc
Q 035416 12 VRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSET-----------SGNYRAFLLSLL 58 (62)
Q Consensus 12 i~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~-----------sG~~~~~ll~l~ 58 (62)
+..|..+||.-+.-..+.+++--..+|.+.++.|. ++||..-+-+++
T Consensus 303 ~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~L 360 (407)
T PLN02851 303 LKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARL 360 (407)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHh
Confidence 35666788887777777777666668877665532 578888877765
No 52
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.47 E-value=87 Score=15.33 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcc
Q 035416 19 TEIDMQYIKAEYSKKY 34 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y 34 (62)
++.|+..+..||+.-|
T Consensus 2 T~~Q~e~L~~A~~~GY 17 (53)
T PF04967_consen 2 TDRQREILKAAYELGY 17 (53)
T ss_pred CHHHHHHHHHHHHcCC
Confidence 5788999999999876
No 53
>PF10849 DUF2654: Protein of unknown function (DUF2654); InterPro: IPR022558 This entry is represented by Bacteriophage T4, a-gt.4; it is a family of uncharacterised viral proteins.
Probab=25.27 E-value=78 Score=16.68 Aligned_cols=31 Identities=10% Similarity=0.323 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhccCccHHHHHhhcccHHHHH
Q 035416 22 DMQYIKAEYSKKYKKTLTDAVHSETSGNYRA 52 (62)
Q Consensus 22 ~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~ 52 (62)
.+.+++.-|++-|..++.+.+..-+.+...+
T Consensus 38 AI~KLR~i~kQp~~~~~i~~mW~tsrqqi~d 68 (70)
T PF10849_consen 38 AIKKLRDIYKQPYNDELIETMWNTSRQQIDD 68 (70)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 4667788888888888888887554444433
No 54
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=25.14 E-value=49 Score=20.44 Aligned_cols=21 Identities=5% Similarity=0.284 Sum_probs=18.5
Q ss_pred HhhCCHHHHHHHHHHHHhccC
Q 035416 15 IVTRTEIDMQYIKAEYSKKYK 35 (62)
Q Consensus 15 l~~rs~~~l~~i~~~Y~~~y~ 35 (62)
+.+.+|+-++++.++|.+.|+
T Consensus 6 vgT~NpaKi~Av~~af~~~~~ 26 (175)
T COG1986 6 VGTTNPAKIRAVEEAFERLFG 26 (175)
T ss_pred ecCCChHHHHHHHHHHHHhcC
Confidence 456788999999999999998
No 55
>PF08010 Phage_30_3: Bacteriophage protein GP30.3; InterPro: IPR012596 Proteins in this family are bacteriophage Y12G proteins. Gene Y12G encodes a 17.1kDa protein in Gp30-rIII intergenic region, which in T4 is a 75 amino acid basic peptide which has a C terminus rich in charged amino acids [][].
Probab=25.04 E-value=1.6e+02 Score=17.74 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=13.7
Q ss_pred hCCHHHHHHHHHHHHhcc
Q 035416 17 TRTEIDMQYIKAEYSKKY 34 (62)
Q Consensus 17 ~rs~~~l~~i~~~Y~~~y 34 (62)
.+|++.-..|.+||.+++
T Consensus 82 R~S~~y~~Li~~Ay~~~~ 99 (146)
T PF08010_consen 82 RHSEAYQNLIDRAYRAMF 99 (146)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 357777888888887776
No 56
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=24.54 E-value=73 Score=18.94 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhccCccHHHHHhhc
Q 035416 21 IDMQYIKAEYSKKYKKTLTDAVHSE 45 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~~~i~~~ 45 (62)
.++..+.++|+++||-...-.++..
T Consensus 94 ~~L~~lN~~Y~~kFGfpFvi~v~g~ 118 (157)
T TIGR03164 94 ARFTRLNNAYRARFGFPFIMAVKGK 118 (157)
T ss_pred HHHHHHHHHHHHHCCCeeEEeeCCC
Confidence 5778888999999998877666544
No 57
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=23.85 E-value=38 Score=15.61 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHhc
Q 035416 19 TEIDMQYIKAEYSKK 33 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~ 33 (62)
.......|+++|+++
T Consensus 10 ~~~~~~~ik~~y~~l 24 (55)
T cd06257 10 PDASDEEIKKAYRKL 24 (55)
T ss_pred CCCCHHHHHHHHHHH
Confidence 345567788888654
No 58
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=23.79 E-value=8.4 Score=22.07 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=9.5
Q ss_pred HhhcccHHHHHH
Q 035416 42 VHSETSGNYRAF 53 (62)
Q Consensus 42 i~~~~sG~~~~~ 53 (62)
.+.|+||+++++
T Consensus 63 ~KGetSG~~q~v 74 (111)
T COG0139 63 TKGETSGHTQKV 74 (111)
T ss_pred ccccccCceEEE
Confidence 468999999873
No 59
>PRK15058 cytochrome b562; Provisional
Probab=23.54 E-value=79 Score=18.50 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhccC
Q 035416 21 IDMQYIKAEYSKKYK 35 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~ 35 (62)
.++..+++.|+..|+
T Consensus 114 ~~l~~lR~eYHkkyr 128 (128)
T PRK15058 114 EQLKTTRNAYHKKYR 128 (128)
T ss_pred HHHHHHHHHHHHhcC
Confidence 578889999998874
No 60
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=23.47 E-value=1.9e+02 Score=17.93 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHhhC-CHHHHHHHHHHHHhccCccHHHHHhhcccHHHHHHHHHhc
Q 035416 10 TLVRVIVTR-TEIDMQYIKAEYSKKYKKTLTDAVHSETSGNYRAFLLSLL 58 (62)
Q Consensus 10 ~Li~il~~r-s~~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~l~ 58 (62)
.|..++..+ ++--...|+..|.-.-..++-+.+.+. .|+|+..|-.+|
T Consensus 126 ~L~~lv~~HLT~KS~~Ri~~vF~~f~~~efL~~lf~~-~~~~~~~L~~i~ 174 (186)
T PF05527_consen 126 LLHQLVEPHLTPKSHGRIDHVFNFFSDPEFLDALFSP-DEEYRDHLGKIC 174 (186)
T ss_dssp HHHHHHTTTS-HHHHHHHHHHHHHHT-HHHHHHHTSG---GGHHHHHHHH
T ss_pred HHHHHHHHhCChhhHHHHHHHHHhhCChHHHHHHhCc-ccchHHHHHHHH
Confidence 344444444 777788888888888888888888753 466777666555
No 61
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=23.11 E-value=1.4e+02 Score=20.07 Aligned_cols=28 Identities=7% Similarity=0.329 Sum_probs=22.0
Q ss_pred HHHhhC-CHHHHHHHHHHHHhccCccHHH
Q 035416 13 RVIVTR-TEIDMQYIKAEYSKKYKKTLTD 40 (62)
Q Consensus 13 ~il~~r-s~~~l~~i~~~Y~~~y~~~L~~ 40 (62)
..+..| ++.++..|.+.|++.||.+|-+
T Consensus 293 ~~~~n~~~~~er~~~~e~~q~~f~~~~~~ 321 (327)
T TIGR01650 293 LTFLNKCDELERPTVAEFFQRAFGEDLPE 321 (327)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCcc
Confidence 345555 6689999999999999998753
No 62
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=22.81 E-value=56 Score=16.30 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=11.6
Q ss_pred ccCccHHHHHhhcccHHHHH
Q 035416 33 KYKKTLTDAVHSETSGNYRA 52 (62)
Q Consensus 33 ~y~~~L~~~i~~~~sG~~~~ 52 (62)
+||..+...|. |||+.+
T Consensus 2 lYgvaiq~Aia---sGDLa~ 18 (53)
T PF08898_consen 2 LYGVAIQQAIA---SGDLAQ 18 (53)
T ss_pred CchHHHHHHHH---cCcHHH
Confidence 47777777776 566655
No 63
>COG3184 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.42 E-value=78 Score=19.69 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhccCccHHHH
Q 035416 19 TEIDMQYIKAEYSKKYKKTLTDA 41 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y~~~L~~~ 41 (62)
+..++..|...|.+--|++|.++
T Consensus 109 T~eEl~ai~aFY~SpaGkklL~k 131 (183)
T COG3184 109 TEEELNAITAFYGSPAGKKLLDK 131 (183)
T ss_pred CHHHHHHHHHHHcCchhHHHHhc
Confidence 67899999999999888888763
No 64
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.40 E-value=1.4e+02 Score=22.31 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhccCccHHHHHhhccc-HHHHHHHHHhcCC
Q 035416 20 EIDMQYIKAEYSKKYKKTLTDAVHSETS-GNYRAFLLSLLGP 60 (62)
Q Consensus 20 ~~~l~~i~~~Y~~~y~~~L~~~i~~~~s-G~~~~~ll~l~~~ 60 (62)
..+.+.+-+..++.|.+-.++-+.+..| |..++.|-+|+.+
T Consensus 505 rqevq~Lld~l~~~~p~lvEei~p~~is~s~iqkVLq~LL~E 546 (696)
T COG1298 505 RQEVQQLLDRLAEEYPKLVEEIVPKKISLSTLQKVLQNLLKE 546 (696)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhccCccCHHHHHHHHHHHHhc
Confidence 3577888888999999988887777777 8899999888764
No 65
>PHA02745 hypothetical protein; Provisional
Probab=22.36 E-value=1.5e+02 Score=19.46 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=16.3
Q ss_pred CcccC-CHHHHHHHHhhCCHHHHHHHHHHHH
Q 035416 2 KGLGT-DDTTLVRVIVTRTEIDMQYIKAEYS 31 (62)
Q Consensus 2 kg~gt-de~~Li~il~~rs~~~l~~i~~~Y~ 31 (62)
+||.| |...++..|. ..|+.|+..|.
T Consensus 236 ~~W~t~D~~~I~ntiR----~KiqeiR~K~g 262 (265)
T PHA02745 236 QRWCTEDHQAIINVIR----NKMQESRRKDR 262 (265)
T ss_pred cCCCCCchHHHHHHHH----HHHHHHHHHhC
Confidence 57777 6666666663 45666665554
No 66
>PF04682 Herpes_BTRF1: Herpesvirus BTRF1 protein conserved region; InterPro: IPR006772 This is a family of Herpesvirus proteins of unknown function.
Probab=22.03 E-value=81 Score=20.63 Aligned_cols=35 Identities=11% Similarity=0.279 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccCccHHHHHhhcccHHHHHHHHH
Q 035416 21 IDMQYIKAEYSKKYKKTLTDAVHSETSGNYRAFLLS 56 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ll~ 56 (62)
--+..+.+-|.+.|+..+......++ +.|++++..
T Consensus 122 ~GLEn~~~~F~~~y~~~l~~vs~~q~-~~Fe~ll~~ 156 (256)
T PF04682_consen 122 MGLENCMQDFEQLYGDHLPPVSEDQT-EFFEKLLER 156 (256)
T ss_pred hChHHHHHHHHHHhcccccccCHHHH-HHHHHHHHH
Confidence 45667888899999999987777777 888886653
No 67
>PHA03102 Small T antigen; Reviewed
Probab=21.86 E-value=71 Score=19.11 Aligned_cols=23 Identities=9% Similarity=0.313 Sum_probs=11.4
Q ss_pred HHHHHHhhCCHH--HHHHHHHHHHh
Q 035416 10 TLVRVIVTRTEI--DMQYIKAEYSK 32 (62)
Q Consensus 10 ~Li~il~~rs~~--~l~~i~~~Y~~ 32 (62)
.+.++|.-...+ ....|+++|++
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~ 30 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLR 30 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 344555443334 45556666653
No 68
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=21.83 E-value=1.9e+02 Score=18.91 Aligned_cols=45 Identities=7% Similarity=0.165 Sum_probs=32.0
Q ss_pred CHHHHHHHHhhCCHHHHHHHHHHHHhccCccHHHHHhhcccHHHH
Q 035416 7 DDTTLVRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHSETSGNYR 51 (62)
Q Consensus 7 de~~Li~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~ 51 (62)
|-+.+.+.|...+.+=+.+..+.|++.-.-.+.+.+-+..|-||-
T Consensus 103 N~ER~lwlla~~d~qi~~~l~nefe~~~~~qv~kel~ekls~dft 147 (266)
T KOG2616|consen 103 NFERVLWLLAGSDSQITRALMNEFERTGSVQVPKELHEKLSEDFT 147 (266)
T ss_pred cHHHHHHHHhCChHHHHHHHHHHHhhCCceecCHHHHHHHHHhhh
Confidence 445566677766667777888888888777777777777666663
No 69
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=21.73 E-value=86 Score=20.22 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhccCccHH
Q 035416 19 TEIDMQYIKAEYSKKYKKTLT 39 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y~~~L~ 39 (62)
++.|...|.+...+.||+.+.
T Consensus 212 s~~q~~~L~~~L~k~~g~~V~ 232 (271)
T PRK13430 212 SDEQKQRLAAALSRIYGRPVH 232 (271)
T ss_pred CHHHHHHHHHHHHHHHCCceE
Confidence 566777777777777776553
No 70
>PF05355 Apo-CII: Apolipoprotein C-II; InterPro: IPR008019 Apolipoprotein CII (apoC-II) is a surface constituent of plasma lipoproteins and the activator for lipoprotein lipase (LPL). It is therefore central for lipid transport in blood. Lipoprotein lipase is a key enzyme in the regulation of triglyceride levels in human serum []. It is the C-terminal helix of apoC-II that is responsible for the activation of LPL []. The active peptide of apoC-II occurs at residues 44-79 and has been shown to reverse the symptoms of genetic apoC-II deficiency in a human subject []. Micellar SDS, a commonly used mimetic of the lipoprotein surface, inhibits the aggregation of apoC-II and induces a stable structure containing approximately 60% alpha-helix. The first 12 residues of apoC-II are structurally heterogeneous but the rest of the protein forms a predominantly helical structure [].; GO: 0008047 enzyme activator activity, 0006629 lipid metabolic process, 0006869 lipid transport, 0042627 chylomicron; PDB: 1BY6_A 1O8T_A 1SOH_A 1I5J_A.
Probab=21.65 E-value=48 Score=17.83 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHhhCCHHHHHHHHHHHHhccCccHHHHHhh---ccc-------HHHHHHHHHhcCCC
Q 035416 13 RVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHS---ETS-------GNYRAFLLSLLGPK 61 (62)
Q Consensus 13 ~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~---~~s-------G~~~~~ll~l~~~~ 61 (62)
+.|.+-+..-......-|+.-++-.+++.|+. +++ |-|.+=++.+++|+
T Consensus 20 ~sl~sYwdsAk~tA~~lyek~~~~~~dEKir~~Yskst~av~TYagI~tDQi~~~L~g~ 78 (78)
T PF05355_consen 20 ESLYSYWDSAKATASGLYEKTYGPKVDEKIRDMYSKSTAAVSTYAGIFTDQIYHILKGE 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSHHHCTTSSSSTTTSSHCHCTHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 55666666777777778888888888887764 332 77888888887764
No 71
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.48 E-value=2.4e+02 Score=19.22 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.6
Q ss_pred CccHHHHHhhcccHHHHHHHHHh
Q 035416 35 KKTLTDAVHSETSGNYRAFLLSL 57 (62)
Q Consensus 35 ~~~L~~~i~~~~sG~~~~~ll~l 57 (62)
-+++.+.|..+..|+++++++.|
T Consensus 207 p~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 207 PKELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred cHHHHHHHHHHhcccHHHHHHHH
Confidence 47788889889999999998865
No 72
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=21.45 E-value=1.8e+02 Score=16.90 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhccCccHHHHHhh
Q 035416 9 TTLVRVIVTRTEIDMQYIKAEYSKKYKKTLTDAVHS 44 (62)
Q Consensus 9 ~~Li~il~~rs~~~l~~i~~~Y~~~y~~~L~~~i~~ 44 (62)
+.+-++|.-.++.+..+++++|+.. +-+-.|++-
T Consensus 52 KsiArvLTVine~~k~~lr~~yk~~--k~~p~dLr~ 85 (123)
T KOG3436|consen 52 KSIARVLTVINEKQKEELREAYKGK--KYLPKDLRP 85 (123)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhcc--cccchhhhH
Confidence 4566778888889999999999876 333344443
No 73
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=20.90 E-value=95 Score=18.66 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhccCccHHHHHhhc
Q 035416 21 IDMQYIKAEYSKKYKKTLTDAVHSE 45 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~~~i~~~ 45 (62)
..+..+.++|+++||-...-.++..
T Consensus 99 ~~l~~lN~~Y~~kFGfpFii~v~g~ 123 (166)
T PRK13798 99 AALAAGNRAYEEKFGFVFLICATGR 123 (166)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCCC
Confidence 5677888899999998877666544
No 74
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=20.70 E-value=91 Score=18.56 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCccHHHHHhhcc
Q 035416 21 IDMQYIKAEYSKKYKKTLTDAVHSET 46 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~~~i~~~~ 46 (62)
..+....++|+++||-...-.++..+
T Consensus 94 ~~L~~lN~~Y~~kFGfpFii~v~g~s 119 (158)
T TIGR03180 94 AALLEGNAAYEEKFGRIFLIRAAGRS 119 (158)
T ss_pred HHHHHHHHHHHHHCCCeEEEeeCCCC
Confidence 56778888999999988877666543
No 75
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=20.58 E-value=90 Score=18.71 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHhccCccH
Q 035416 19 TEIDMQYIKAEYSKKYKKTL 38 (62)
Q Consensus 19 s~~~l~~i~~~Y~~~y~~~L 38 (62)
++.|+..|.+...+.||+.+
T Consensus 116 s~~q~~~l~~~L~k~~g~~v 135 (184)
T PRK13434 116 EPAQVDKLGSILSEKFKSEF 135 (184)
T ss_pred CHHHHHHHHHHHHHHHCCEe
Confidence 34455555555555555443
No 76
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=20.35 E-value=1.5e+02 Score=20.72 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhccCccHHHHHhhcccHHHHHH
Q 035416 21 IDMQYIKAEYSKKYKKTLTDAVHSETSGNYRAF 53 (62)
Q Consensus 21 ~~l~~i~~~Y~~~y~~~L~~~i~~~~sG~~~~~ 53 (62)
..+..|+..|...|..+|.++++.+.--...++
T Consensus 130 ~~I~~Ik~~yg~~~~~sla~el~~ki~~e~~~l 162 (416)
T PF04415_consen 130 QKINQIKDMYGPLLSQSLAQELVRKIISEVNSL 162 (416)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 344555677777788888777776654444443
No 77
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=20.10 E-value=50 Score=15.54 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=11.9
Q ss_pred HHhhCCHHHHHHHHHHHHhc
Q 035416 14 VIVTRTEIDMQYIKAEYSKK 33 (62)
Q Consensus 14 il~~rs~~~l~~i~~~Y~~~ 33 (62)
+|.-........|+++|+++
T Consensus 6 vLgl~~~~~~~~ik~ay~~l 25 (60)
T smart00271 6 ILGVPRDASLDEIKKAYRKL 25 (60)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 33333335667788888654
Done!