BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035417
MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKLPATLHVNDGFRQFYRHFSVLDESTPVR
H

High Scoring Gene Products

Symbol, full name Information P value
AKR2B
ankyrin repeat-containing 2B 		protein from Arabidopsis thaliana 2.7e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035417
        (61 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2827572 - symbol:AKR2B "ankyrin repeat-contain...   115  2.7e-06   1


>TAIR|locus:2827572 [details] [associations]
            symbol:AKR2B "ankyrin repeat-containing 2B" species:3702
            "Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=TAS] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR002110 PROSITE:PS50088 SMART:SM00248 GO:GO:0005886
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
            eggNOG:COG0666 Gene3D:1.25.40.20 InterPro:IPR020683 SUPFAM:SSF48403
            PROSITE:PS50297 EMBL:BT024730 IPI:IPI00544070 PIR:F84551
            RefSeq:NP_179331.1 UniGene:At.23593 UniGene:At.73210
            ProteinModelPortal:Q29Q26 SMR:Q29Q26 STRING:Q29Q26 PaxDb:Q29Q26
            PRIDE:Q29Q26 EnsemblPlants:AT2G17390.1 GeneID:816246
            KEGG:ath:AT2G17390 TAIR:At2g17390 HOGENOM:HOG000240562 OMA:MSSMLEN
            PhylomeDB:Q29Q26 ProtClustDB:CLSN2683889 Genevestigator:Q29Q26
            Uniprot:Q29Q26
        Length = 344

 Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 22/33 (66%), Positives = 29/33 (87%)

Query:     1 MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
             +L+NG+AVT QNMD K PIDVA+LN+Q D++KL
Sbjct:   305 LLENGAAVTQQNMDNKNPIDVARLNNQLDVVKL 337


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       61        61   0.00091  102 3  11 22  0.49    27
                                                     29  0.39    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  437 (47 KB)
  Total size of DFA:  76 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.09u 0.12s 8.21t   Elapsed:  00:00:01
  Total cpu time:  8.09u 0.12s 8.21t   Elapsed:  00:00:01
  Start:  Mon May 20 18:05:42 2013   End:  Mon May 20 18:05:43 2013

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