BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035417
         (61 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
 pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
 pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
 pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
          Length = 237

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 2   LKNGSAVTLQNMDRKTPIDVAKLNSQ 27
           L   S VTL+N + +TP+  A LNSQ
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQ 222


>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
          Structural Genomics Consortium Target Or266.
 pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
          Structural Genomics Consortium Target Or266
          Length = 169

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 1  MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
          +L+NG+ V   + D KTP+ +A  N   +++KL
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKL 55


>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
          Length = 115

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 1  MLKNGSAVTLQNMDRKTPIDVAKLNSQHDMLKL 33
          +L  G+ V  ++ D  TP  +AK N  H+++KL
Sbjct: 61 LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKL 93


>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
          Length = 227

 Score = 25.4 bits (54), Expect = 7.6,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAK 23
           ++  G+++ ++N + KTP+ VAK
Sbjct: 192 LVSQGASIYIENKEEKTPLQVAK 214


>pdb|1UOH|A Chain A, Human Gankyrin
 pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
          Length = 226

 Score = 25.4 bits (54), Expect = 7.8,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 1   MLKNGSAVTLQNMDRKTPIDVAK 23
           ++  G+++ ++N + KTP+ VAK
Sbjct: 191 LVSQGASIYIENKEEKTPLQVAK 213


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,717,803
Number of Sequences: 62578
Number of extensions: 52383
Number of successful extensions: 118
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 14
length of query: 61
length of database: 14,973,337
effective HSP length: 32
effective length of query: 29
effective length of database: 12,970,841
effective search space: 376154389
effective search space used: 376154389
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)