Query 035418
Match_columns 37
No_of_seqs 63 out of 65
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 02:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10215 Ost4: Oligosaccaryltr 99.9 4.8E-24 1E-28 107.5 3.7 35 1-35 1-35 (35)
2 cd01324 cbb3_Oxidase_CcoQ Cyto 94.7 0.09 2E-06 27.2 3.8 32 1-32 1-36 (48)
3 PF03908 Sec20: Sec20; InterP 66.9 13 0.00027 20.4 3.4 19 8-26 69-87 (92)
4 PF15202 Adipogenin: Adipogeni 62.3 19 0.00041 21.0 3.6 22 10-31 21-42 (81)
5 PF09163 Form-deh_trans: Forma 60.9 16 0.00034 18.9 2.9 23 13-35 17-39 (44)
6 cd08319 Death_RAIDD Death doma 60.5 8 0.00017 21.6 1.8 14 3-16 1-14 (83)
7 PF03530 SK_channel: Calcium-a 55.5 26 0.00057 21.1 3.6 15 16-30 60-74 (119)
8 CHL00190 psaM photosystem I su 55.1 24 0.00053 17.1 3.3 8 1-8 1-8 (30)
9 PLN02351 cytochromes b561 fami 54.6 23 0.00049 23.7 3.5 28 8-35 198-225 (242)
10 PF01998 DUF131: Protein of un 52.4 33 0.00072 18.7 3.4 23 3-25 40-62 (64)
11 cd08764 Cyt_b561_CG1275_like N 51.8 29 0.00063 22.5 3.6 28 8-35 173-200 (214)
12 PF10225 DUF2215: Uncharacteri 48.8 22 0.00047 23.1 2.7 26 8-33 38-63 (249)
13 TIGR00941 2a6301s03 Multicompo 48.6 53 0.0012 19.2 4.1 29 7-35 74-102 (104)
14 PF00034 Cytochrom_C: Cytochro 48.2 22 0.00047 17.1 2.1 14 2-15 75-88 (91)
15 PRK08600 putative monovalent c 43.7 50 0.0011 19.6 3.5 26 7-32 74-99 (113)
16 TIGR00192 urease_beta urease, 42.4 8.7 0.00019 23.0 0.1 11 25-35 40-50 (101)
17 KOG3415 Putative Rab5-interact 41.4 38 0.00082 21.2 2.8 21 10-30 65-88 (129)
18 PF11869 DUF3389: Protein of u 40.7 17 0.00038 20.8 1.2 15 3-17 59-73 (75)
19 cd00407 Urease_beta Urease bet 40.4 9.8 0.00021 22.8 0.1 11 25-35 40-50 (101)
20 PRK13202 ureB urease subunit b 40.1 10 0.00022 22.9 0.1 11 25-35 41-51 (104)
21 PRK07946 putative monovalent c 39.8 74 0.0016 20.2 4.0 23 7-29 78-100 (163)
22 PF05545 FixQ: Cbb3-type cytoc 39.5 51 0.0011 16.2 3.6 29 3-31 2-34 (49)
23 PF13767 DUF4168: Domain of un 39.4 23 0.0005 18.8 1.5 13 2-14 1-13 (78)
24 PRK13203 ureB urease subunit b 38.8 11 0.00023 22.7 0.0 11 25-35 40-50 (102)
25 COG1006 MnhC Multisubunit Na+/ 37.8 60 0.0013 19.5 3.2 24 7-30 77-100 (115)
26 PF00699 Urease_beta: Urease b 36.7 8.8 0.00019 23.0 -0.5 11 25-35 39-49 (100)
27 PRK12658 putative monovalent c 36.4 73 0.0016 19.2 3.4 23 7-29 78-100 (125)
28 PF12459 DUF3687: D-Ala-teicho 35.9 29 0.00062 17.8 1.4 16 16-31 19-34 (42)
29 COG2738 Predicted Zn-dependent 35.7 33 0.00073 23.2 2.1 25 11-35 145-169 (226)
30 PF01102 Glycophorin_A: Glycop 35.3 60 0.0013 19.5 2.9 19 9-27 70-88 (122)
31 cd08777 Death_RIP1 Death Domai 35.1 38 0.00081 18.7 1.9 14 3-16 1-14 (86)
32 KOG3269 Predicted membrane pro 34.6 71 0.0015 20.9 3.4 24 12-35 55-80 (180)
33 PF04298 Zn_peptidase_2: Putat 34.5 52 0.0011 21.8 2.8 24 8-31 140-163 (222)
34 PF04277 OAD_gamma: Oxaloaceta 34.3 73 0.0016 16.5 3.4 22 7-28 5-26 (79)
35 KOG3970 Predicted E3 ubiquitin 33.3 64 0.0014 22.6 3.2 20 6-25 251-270 (299)
36 cd08318 Death_NMPP84 Death dom 31.7 53 0.0011 17.9 2.1 15 2-16 5-19 (86)
37 PRK13204 ureB urease subunit b 31.4 17 0.00037 23.4 0.1 11 25-35 63-73 (159)
38 PRK13201 ureB urease subunit b 31.3 17 0.00037 22.9 0.1 11 25-35 40-50 (136)
39 PF15012 DUF4519: Domain of un 31.1 10 0.00023 20.7 -0.8 26 7-32 30-55 (56)
40 PF01757 Acyl_transf_3: Acyltr 31.0 63 0.0014 18.3 2.4 16 16-31 9-24 (340)
41 PF12292 DUF3624: Protein of u 30.9 1.1E+02 0.0024 17.5 3.6 25 5-29 45-69 (77)
42 cd06550 TM_ABC_iron-siderophor 30.8 1.1E+02 0.0024 19.0 3.7 29 2-30 126-154 (261)
43 PRK09094 putative monovalent c 30.6 1.2E+02 0.0027 18.0 3.9 23 7-29 78-100 (114)
44 PF09539 DUF2385: Protein of u 29.9 71 0.0015 18.7 2.6 16 4-19 3-18 (96)
45 PF04021 Class_IIIsignal: Clas 29.0 71 0.0015 14.7 2.7 21 7-27 7-27 (28)
46 PF15339 Afaf: Acrosome format 28.5 97 0.0021 20.7 3.3 22 4-25 124-145 (200)
47 PRK13198 ureB urease subunit b 28.2 21 0.00045 23.0 0.1 11 25-35 68-78 (158)
48 PF13442 Cytochrome_CBB3: Cyto 28.1 68 0.0015 15.7 2.0 13 2-14 55-67 (67)
49 PRK12659 putative monovalent c 27.6 1.3E+02 0.0029 17.5 3.5 25 7-31 78-102 (117)
50 PRK13192 bifunctional urease s 27.6 21 0.00045 23.8 0.1 11 25-35 149-159 (208)
51 PRK13205 ureB urease subunit b 27.5 22 0.00047 23.0 0.1 10 25-34 40-49 (162)
52 PRK08944 motB flagellar motor 27.4 1E+02 0.0022 20.6 3.2 29 7-35 18-47 (302)
53 PF10841 DUF2644: Protein of u 27.3 1E+02 0.0022 17.0 2.7 20 9-28 15-34 (60)
54 PRK14781 lipoprotein signal pe 27.2 1.2E+02 0.0027 18.3 3.4 26 7-35 126-151 (153)
55 PRK08476 F0F1 ATP synthase sub 27.1 1.4E+02 0.003 17.5 3.5 21 8-28 8-28 (141)
56 KOG3684 Ca2+-activated K+ chan 26.9 1.1E+02 0.0025 22.7 3.7 15 16-30 120-134 (489)
57 PF10960 DUF2762: Protein of u 26.8 1.1E+02 0.0023 16.9 2.8 26 4-29 2-27 (71)
58 PF00950 ABC-3: ABC 3 transpor 26.0 1.6E+02 0.0035 18.9 3.9 27 2-28 122-148 (257)
59 PF10661 EssA: WXG100 protein 25.8 1.1E+02 0.0024 18.6 3.0 19 9-27 121-139 (145)
60 PF05170 AsmA: AsmA family; I 25.6 1E+02 0.0022 21.2 3.0 25 7-31 5-29 (604)
61 PLN03208 E3 ubiquitin-protein 25.4 60 0.0013 21.1 1.9 22 3-24 171-192 (193)
62 PRK12660 putative monovalent c 25.1 1.5E+02 0.0032 17.2 3.4 23 7-29 75-97 (114)
63 PF14898 DUF4491: Domain of un 25.1 24 0.00052 20.9 0.0 25 10-34 4-28 (94)
64 PF14937 DUF4500: Domain of un 25.0 72 0.0016 18.7 2.0 17 10-26 38-54 (86)
65 TIGR01010 BexC_CtrB_KpsE polys 24.9 1.4E+02 0.0031 19.4 3.5 18 19-36 15-32 (362)
66 PF03250 Tropomodulin: Tropomo 24.9 81 0.0017 20.0 2.3 17 3-19 127-143 (147)
67 PF12428 DUF3675: Protein of u 24.9 1.3E+02 0.0028 17.9 3.2 22 9-30 62-83 (118)
68 PF04688 Phage_holin: Phage ly 24.4 1.1E+02 0.0025 15.5 3.8 10 2-11 7-16 (47)
69 cd08803 Death_ank3 Death domai 24.3 58 0.0013 18.0 1.5 14 3-16 3-16 (84)
70 PHA02054 hypothetical protein 24.3 51 0.0011 19.7 1.3 15 20-34 10-24 (94)
71 PF00874 PRD: PRD domain; Int 23.9 1E+02 0.0022 14.9 2.5 15 2-16 74-88 (89)
72 PRK13986 urease subunit alpha; 23.8 27 0.00058 23.5 0.1 10 25-34 145-154 (225)
73 cd08804 Death_ank2 Death domai 23.4 72 0.0016 17.4 1.7 15 3-17 3-17 (84)
74 PF07950 DUF1691: Protein of u 23.1 1.4E+02 0.0031 16.8 2.9 19 11-29 40-58 (110)
75 COG1108 ZnuB ABC-type Mn2+/Zn2 23.1 1.9E+02 0.0042 19.2 4.0 28 2-29 131-158 (274)
76 TIGR02701 shell_carb_anhy carb 23.0 7.9 0.00017 28.3 -2.7 15 22-36 188-202 (450)
77 PF11770 GAPT: GRB2-binding ad 22.7 1E+02 0.0022 19.8 2.5 16 9-24 9-24 (158)
78 TIGR01958 nuoE_fam NADH-quinon 22.3 1.4E+02 0.003 17.6 2.9 32 2-33 32-66 (148)
79 PRK11564 stationary phase indu 22.1 1.1E+02 0.0024 20.3 2.6 18 2-19 314-331 (426)
80 PRK07353 F0F1 ATP synthase sub 22.0 1.6E+02 0.0035 16.5 3.4 20 9-28 7-26 (140)
81 PLN02680 carbon-monoxide oxyge 21.6 1.8E+02 0.0039 19.3 3.6 24 9-32 196-219 (232)
82 PF07406 NICE-3: NICE-3 protei 21.5 1E+02 0.0022 19.5 2.4 16 10-25 15-30 (186)
83 PRK03854 opgC glucans biosynth 21.5 78 0.0017 20.5 1.8 16 14-29 15-30 (375)
84 PF13282 DUF4070: Domain of un 21.1 1.3E+02 0.0029 17.9 2.7 17 14-30 118-134 (146)
85 smart00367 LRR_CC Leucine-rich 21.1 83 0.0018 13.3 1.4 11 2-12 15-25 (26)
86 PRK12661 putative monovalent c 21.1 2.1E+02 0.0046 17.5 3.8 23 7-29 103-125 (140)
87 TIGR02301 conserved hypothetic 21.1 1.3E+02 0.0028 18.4 2.7 14 4-17 28-41 (121)
88 PF05624 LSR: Lipolysis stimul 21.0 1.1E+02 0.0025 16.4 2.1 16 9-24 5-20 (49)
89 PRK14471 F0F1 ATP synthase sub 20.8 1.9E+02 0.0042 16.9 3.4 21 8-28 9-29 (164)
90 KOG2693 Putative zinc transpor 20.8 79 0.0017 22.7 1.9 19 7-25 434-452 (453)
91 PRK02868 hypothetical protein; 20.7 2E+02 0.0044 19.2 3.7 29 5-33 15-43 (245)
92 PRK01741 cell division protein 20.7 73 0.0016 22.4 1.7 27 6-33 2-28 (332)
93 PLN02810 carbon-monoxide oxyge 20.7 2E+02 0.0044 19.2 3.7 27 8-34 194-222 (231)
94 PF04869 Uso1_p115_head: Uso1 20.4 85 0.0018 21.1 1.9 19 13-31 218-236 (312)
95 cd08779 Death_PIDD Death Domai 20.2 96 0.0021 16.9 1.8 14 3-16 1-14 (86)
96 COG2871 NqrF Na+-transporting 20.2 64 0.0014 23.4 1.3 15 11-25 5-19 (410)
97 PF12271 Chs3p: Chitin synthas 20.0 1.6E+02 0.0035 20.3 3.2 22 6-27 52-73 (293)
No 1
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=99.89 E-value=4.8e-24 Score=107.45 Aligned_cols=35 Identities=43% Similarity=0.680 Sum_probs=30.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 035418 1 MIDDQDLGFFANMLGIFLFVLVIAYHYVVADAKYE 35 (37)
Q Consensus 1 MIsD~qL~~la~~lG~~~m~LIV~YH~v~~n~k~~ 35 (37)
||||+||+.|||+||+++|+|||+|||+++|+|+|
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVlYH~v~~n~~~~ 35 (35)
T PF10215_consen 1 MISDVQLYTLANFLGVAAMVLIVLYHFVEVNAKDK 35 (35)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHCCH-TT-
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999986
No 2
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=94.67 E-value=0.09 Score=27.16 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHHHH----HHHHHHHHHHHHhccc
Q 035418 1 MIDDQDLGFFANMLGI----FLFVLVIAYHYVVADA 32 (37)
Q Consensus 1 MIsD~qL~~la~~lG~----~~m~LIV~YH~v~~n~ 32 (37)
|-+.+.|..+|-+.|. ++|+.||+|+|--.|.
T Consensus 1 Md~~~~lr~~a~~~~l~~~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 1 MDIGETLRGLADSWGLLYLALFFLGVVVWAFRPGRK 36 (48)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4456789999999999 8999999999987663
No 3
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=66.91 E-value=13 Score=20.39 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035418 8 GFFANMLGIFLFVLVIAYH 26 (37)
Q Consensus 8 ~~la~~lG~~~m~LIV~YH 26 (37)
..+-+++|++.|+++|+|=
T Consensus 69 D~~li~~~~~~f~~~v~yI 87 (92)
T PF03908_consen 69 DRILIFFAFLFFLLVVLYI 87 (92)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566778888899988883
No 4
>PF15202 Adipogenin: Adipogenin
Probab=62.28 E-value=19 Score=21.00 Aligned_cols=22 Identities=18% Similarity=0.621 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 035418 10 FANMLGIFLFVLVIAYHYVVAD 31 (37)
Q Consensus 10 la~~lG~~~m~LIV~YH~v~~n 31 (37)
++.-.|..+|++||-.||+-+.
T Consensus 21 lclpv~lllfl~ivwlrfllsq 42 (81)
T PF15202_consen 21 LCLPVGLLLFLLIVWLRFLLSQ 42 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 3445688999999999998755
No 5
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=60.93 E-value=16 Score=18.88 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccc
Q 035418 13 MLGIFLFVLVIAYHYVVADAKYE 35 (37)
Q Consensus 13 ~lG~~~m~LIV~YH~v~~n~k~~ 35 (37)
.+|...-++-.++||+.+-|+..
T Consensus 17 ~~~~~~~~~~~~~Hyi~vGPn~v 39 (44)
T PF09163_consen 17 AAGMGATAAAGFFHYITVGPNRV 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH--B-S
T ss_pred HHHHHHHHHHHHHHHhhcCCCCC
Confidence 34555566778899999877643
No 6
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=60.49 E-value=8 Score=21.60 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHH
Q 035418 3 DDQDLGFFANMLGI 16 (37)
Q Consensus 3 sD~qL~~la~~lG~ 16 (37)
||.||+.+|.-+|.
T Consensus 1 t~~~L~~la~~LG~ 14 (83)
T cd08319 1 TDRELNQLAQRLGP 14 (83)
T ss_pred CHHHHHHHHHHHhh
Confidence 79999999999985
No 7
>PF03530 SK_channel: Calcium-activated SK potassium channel; InterPro: IPR011996 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. SK channels are thought to play an important role in the functioning of all excitable tissues. To date, 3 subtypes (designated SK1-SK3) have been cloned, each of which possesses a different tissue expression profile: SK1 channels are expressed in the heart; SK2 channels are found in the adrenal gland; and SK3 channels are known to be present in skeletal muscle []. SK channels have a single-channel conductance of 2-20 pS and are activated by rises in cytosolic calcium with half maximal activation in the 400-800 nM range [, ]. Unlike BK channels, they are voltage insensitive and unaffected by low concentrations of TEA, charybdotoxin, or iberiotoxin. However, they are potently blocked by the bee venom apamin [, ], tubocurarine, and quaternary salts of bicuculline [, ]. A new series of compounds that block SK channels include dequalinium Synonym(s): SK Channel This entry represents a conserved region, found in proteins of SK channels family.
Probab=55.51 E-value=26 Score=21.13 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhc
Q 035418 16 IFLFVLVIAYHYVVA 30 (37)
Q Consensus 16 ~~~m~LIV~YH~v~~ 30 (37)
+++..||++||..+.
T Consensus 60 ~~Ll~lii~yH~~ei 74 (119)
T PF03530_consen 60 IILLGLIIAYHAREI 74 (119)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456678999999874
No 8
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=55.10 E-value=24 Score=17.07 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=7.0
Q ss_pred CCcHHHHH
Q 035418 1 MIDDQDLG 8 (37)
Q Consensus 1 MIsD~qL~ 8 (37)
||||.|..
T Consensus 1 misd~Qi~ 8 (30)
T CHL00190 1 MISDSQIF 8 (30)
T ss_pred CchHHHHH
Confidence 89999975
No 9
>PLN02351 cytochromes b561 family protein
Probab=54.60 E-value=23 Score=23.74 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q 035418 8 GFFANMLGIFLFVLVIAYHYVVADAKYE 35 (37)
Q Consensus 8 ~~la~~lG~~~m~LIV~YH~v~~n~k~~ 35 (37)
..++|++|+.+.++-++-=+..++|+++
T Consensus 198 a~lvN~~Glliv~fG~~Vv~~~~~p~~k 225 (242)
T PLN02351 198 SMVVNGLGLGLALLSGIVILAAVLPKYQ 225 (242)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 4589999998888754444555677664
No 10
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=52.36 E-value=33 Score=18.66 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 035418 3 DDQDLGFFANMLGIFLFVLVIAY 25 (37)
Q Consensus 3 sD~qL~~la~~lG~~~m~LIV~Y 25 (37)
||.++...+..+++.+|++.++.
T Consensus 40 s~~~~~~~~~ilaiil~i~~~l~ 62 (64)
T PF01998_consen 40 SSPRIAKIAMILAIILMILALLL 62 (64)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999998887664
No 11
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=51.76 E-value=29 Score=22.46 Aligned_cols=28 Identities=29% Similarity=0.611 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q 035418 8 GFFANMLGIFLFVLVIAYHYVVADAKYE 35 (37)
Q Consensus 8 ~~la~~lG~~~m~LIV~YH~v~~n~k~~ 35 (37)
+.++|++|+++.++-++-=+...+|+++
T Consensus 173 ~~l~N~~gl~~~~fg~~V~~~~~~~~~k 200 (214)
T cd08764 173 GVLGNFIGIVLVIFGGLVVYLVTEPDYK 200 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccC
Confidence 4589999998877766666666666554
No 12
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=48.79 E-value=22 Score=23.08 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 035418 8 GFFANMLGIFLFVLVIAYHYVVADAK 33 (37)
Q Consensus 8 ~~la~~lG~~~m~LIV~YH~v~~n~k 33 (37)
|.-++.+|+++.++|++|=..-.=||
T Consensus 38 Y~sg~~lGv~~s~li~~~~~~k~lPr 63 (249)
T PF10225_consen 38 YSSGISLGVLASLLILLFQLSKLLPR 63 (249)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHccC
Confidence 45678999999999999865444443
No 13
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=48.57 E-value=53 Score=19.22 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVVADAKYE 35 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~~n~k~~ 35 (37)
|..+++.++..+++|...|..-.....+|
T Consensus 74 LTAIVIg~a~tA~~Lal~~r~~~~~gt~d 102 (104)
T TIGR00941 74 LTAIVIGFATTALFLVVALRAYQVAGTDD 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 56788999999999999998776665544
No 14
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=48.21 E-value=22 Score=17.08 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=11.8
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
+||+|+..++.+|=
T Consensus 75 ls~~e~~~l~ayl~ 88 (91)
T PF00034_consen 75 LSDEEIADLAAYLR 88 (91)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68999999988763
No 15
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=43.68 E-value=50 Score=19.57 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVVADA 32 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~~n~ 32 (37)
|..+++.++..+++|.+.|..-....
T Consensus 74 LTaIVIg~a~tAl~L~l~~r~~~~~g 99 (113)
T PRK08600 74 LTAIVISFGVTAFFLVLAYRTYKELG 99 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56788999999999999987655443
No 16
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=42.40 E-value=8.7 Score=23.01 Aligned_cols=11 Identities=9% Similarity=0.558 Sum_probs=9.0
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++|+-.+
T Consensus 40 yHF~E~N~aL~ 50 (101)
T TIGR00192 40 FHFFEVNRALD 50 (101)
T ss_pred cchhhcCccee
Confidence 89999998643
No 17
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.39 E-value=38 Score=21.25 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHhc
Q 035418 10 FANMLGIFLFVLV---IAYHYVVA 30 (37)
Q Consensus 10 la~~lG~~~m~LI---V~YH~v~~ 30 (37)
+.-+||++.|+.| |+|||.+.
T Consensus 65 L~G~l~iv~f~~issgIvy~y~~~ 88 (129)
T KOG3415|consen 65 LVGFLGIVLFLGISSGIVYLYYAN 88 (129)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHH
Confidence 3456777777765 88999863
No 18
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=40.72 E-value=17 Score=20.79 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHHH
Q 035418 3 DDQDLGFFANMLGIF 17 (37)
Q Consensus 3 sD~qL~~la~~lG~~ 17 (37)
+++||..++..+|+.
T Consensus 59 ~eeQL~~ia~~lGi~ 73 (75)
T PF11869_consen 59 NEEQLQAIAEELGID 73 (75)
T ss_pred CHHHHHHHHHHhCcc
Confidence 579999999999974
No 19
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=40.45 E-value=9.8 Score=22.78 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=9.0
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++|+-.+
T Consensus 40 ~HF~E~N~aL~ 50 (101)
T cd00407 40 YHFFEVNPALK 50 (101)
T ss_pred cchhhcCcccc
Confidence 89999998643
No 20
>PRK13202 ureB urease subunit beta; Reviewed
Probab=40.11 E-value=10 Score=22.86 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=9.0
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++|+-.+
T Consensus 41 yHF~E~N~aL~ 51 (104)
T PRK13202 41 VHLPQANRALS 51 (104)
T ss_pred cchhhcCccee
Confidence 89999998543
No 21
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=39.81 E-value=74 Score=20.21 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVV 29 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~ 29 (37)
|..+++.+|..+|+|.+.|..-.
T Consensus 78 LTAIVIg~a~tA~~LaL~~r~y~ 100 (163)
T PRK07946 78 LTAIVITMGITAFVLALAYRSYR 100 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999986543
No 22
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=39.49 E-value=51 Score=16.21 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHHH----HHHHHHHHHHHhcc
Q 035418 3 DDQDLGFFANMLGIF----LFVLVIAYHYVVAD 31 (37)
Q Consensus 3 sD~qL~~la~~lG~~----~m~LIV~YH~v~~n 31 (37)
|-+.+..++-++|.+ .|+.|+.|.|-..|
T Consensus 2 ~~~~~~~~~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 2 TYETLQGFARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 556666666665554 44556777775554
No 23
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=39.45 E-value=23 Score=18.83 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=10.6
Q ss_pred CcHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANML 14 (37)
Q Consensus 2 IsD~qL~~la~~l 14 (37)
|||+||..||-.+
T Consensus 1 ~s~~el~~fA~A~ 13 (78)
T PF13767_consen 1 FSDAELDQFARAV 13 (78)
T ss_pred CCHHHHHHHHHHH
Confidence 6899999988654
No 24
>PRK13203 ureB urease subunit beta; Reviewed
Probab=38.75 E-value=11 Score=22.70 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=9.0
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++|+-.+
T Consensus 40 ~HF~E~N~aL~ 50 (102)
T PRK13203 40 YHFFEVNPALS 50 (102)
T ss_pred cchhhcCcchh
Confidence 89999998643
No 25
>COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism]
Probab=37.76 E-value=60 Score=19.48 Aligned_cols=24 Identities=21% Similarity=0.168 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVVA 30 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~~ 30 (37)
|..+++.++..+++|+++|-.-.-
T Consensus 77 LTAIVIgfa~tal~L~l~~~~y~~ 100 (115)
T COG1006 77 LTAIVIGFATTALALVLAYRAYKE 100 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999998865443
No 26
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=36.74 E-value=8.8 Score=22.96 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=7.1
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++|+..+
T Consensus 39 ~HF~E~N~aL~ 49 (100)
T PF00699_consen 39 YHFFEVNPALE 49 (100)
T ss_dssp S-GGGS-TTEE
T ss_pred cCHHHHhHHhh
Confidence 89999998643
No 27
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=36.44 E-value=73 Score=19.21 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVV 29 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~ 29 (37)
|-.+++.++..+++|.+.|-.-.
T Consensus 78 LTAIVIg~a~tA~~L~L~~r~~~ 100 (125)
T PRK12658 78 LTAIVIGFGLLAFLLVLAYRAYQ 100 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999886543
No 28
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=35.86 E-value=29 Score=17.84 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhcc
Q 035418 16 IFLFVLVIAYHYVVAD 31 (37)
Q Consensus 16 ~~~m~LIV~YH~v~~n 31 (37)
+.+|+|+-+|+|...|
T Consensus 19 ~Ill~L~ylYgy~g~~ 34 (42)
T PF12459_consen 19 AILLALIYLYGYSGIG 34 (42)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 4567888999997766
No 29
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=35.73 E-value=33 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Q 035418 11 ANMLGIFLFVLVIAYHYVVADAKYE 35 (37)
Q Consensus 11 a~~lG~~~m~LIV~YH~v~~n~k~~ 35 (37)
...+|+.+|...|++|.+..--+++
T Consensus 145 ll~lGiiLfs~aVLF~lvTLPVEFD 169 (226)
T COG2738 145 LLWLGIILFSAAVLFQLVTLPVEFD 169 (226)
T ss_pred HHHHHHHHHHHHHHHheeecceeec
Confidence 4578999999999999887544443
No 30
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.27 E-value=60 Score=19.54 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035418 9 FFANMLGIFLFVLVIAYHY 27 (37)
Q Consensus 9 ~la~~lG~~~m~LIV~YH~ 27 (37)
.|+...|++.++|.+.|=.
T Consensus 70 i~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566677777777666643
No 31
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=35.13 E-value=38 Score=18.73 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHHHH
Q 035418 3 DDQDLGFFANMLGI 16 (37)
Q Consensus 3 sD~qL~~la~~lG~ 16 (37)
|++||..++.-+|.
T Consensus 1 ~~~~l~~l~~~lG~ 14 (86)
T cd08777 1 TEKHLDLLRENLGK 14 (86)
T ss_pred CHHHHHHHHHHHHH
Confidence 68899999888885
No 32
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=34.62 E-value=71 Score=20.87 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHh--cccccc
Q 035418 12 NMLGIFLFVLVIAYHYVV--ADAKYE 35 (37)
Q Consensus 12 ~~lG~~~m~LIV~YH~v~--~n~k~~ 35 (37)
+.|++......+.||++. +.|||+
T Consensus 55 i~lv~s~l~~g~~y~~m~~mAkpkyd 80 (180)
T KOG3269|consen 55 IGLVFSSLVYGFAYYFMHSMAKPKYD 80 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcC
Confidence 456777788889999987 668876
No 33
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=34.46 E-value=52 Score=21.77 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 035418 8 GFFANMLGIFLFVLVIAYHYVVAD 31 (37)
Q Consensus 8 ~~la~~lG~~~m~LIV~YH~v~~n 31 (37)
...-..+|+.+|.+.+++|.+.--
T Consensus 140 ~~~l~~~Gi~lf~~~vlf~lvTLP 163 (222)
T PF04298_consen 140 GAGLLWIGIILFSLAVLFQLVTLP 163 (222)
T ss_pred HHHHHHHHHHHHHHHHHHheeech
Confidence 345567899999999999987643
No 34
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=34.31 E-value=73 Score=16.51 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035418 7 LGFFANMLGIFLFVLVIAYHYV 28 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v 28 (37)
|......+|++.+.|++++=.+
T Consensus 5 l~i~i~Gm~iVF~~L~lL~~~i 26 (79)
T PF04277_consen 5 LQIMIIGMGIVFLVLILLILVI 26 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777666665433
No 35
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=64 Score=22.56 Aligned_cols=20 Identities=25% Similarity=0.585 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035418 6 DLGFFANMLGIFLFVLVIAY 25 (37)
Q Consensus 6 qL~~la~~lG~~~m~LIV~Y 25 (37)
+-.-|.+++|+.+|++||.-
T Consensus 251 ~ra~fli~lgvLafi~~i~l 270 (299)
T KOG3970|consen 251 KRALFLIFLGVLAFITIIML 270 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45668899999999988753
No 36
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=31.70 E-value=53 Score=17.88 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=12.9
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
.|++|+..+|.-+|.
T Consensus 5 ~t~~~l~~ia~~iG~ 19 (86)
T cd08318 5 VTGEQITVFANKLGE 19 (86)
T ss_pred CCHHHHHHHHHHHhh
Confidence 588999999998885
No 37
>PRK13204 ureB urease subunit beta; Reviewed
Probab=31.38 E-value=17 Score=23.41 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=9.1
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++|+-.+
T Consensus 63 yHF~EvN~aL~ 73 (159)
T PRK13204 63 FHFFEVNRYLE 73 (159)
T ss_pred cchhhcCcccc
Confidence 89999998653
No 38
>PRK13201 ureB urease subunit beta; Reviewed
Probab=31.29 E-value=17 Score=22.87 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=9.0
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++|+-.+
T Consensus 40 yHF~EvN~aL~ 50 (136)
T PRK13201 40 FHFYEANAALD 50 (136)
T ss_pred cchhhcCcccc
Confidence 89999998653
No 39
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=31.11 E-value=10 Score=20.68 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVVADA 32 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~~n~ 32 (37)
+...+.-.=.+.+++||+|=|+..-|
T Consensus 30 v~tVVlP~l~~~~~~Ivv~vy~kTRP 55 (56)
T PF15012_consen 30 VFTVVLPTLAAVFLFIVVFVYLKTRP 55 (56)
T ss_pred heeEehhHHHHHHHHHhheeEEeccC
Confidence 33333333334566777777766554
No 40
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=30.99 E-value=63 Score=18.29 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhcc
Q 035418 16 IFLFVLVIAYHYVVAD 31 (37)
Q Consensus 16 ~~~m~LIV~YH~v~~n 31 (37)
.+++++||++|.....
T Consensus 9 ~ia~l~Vv~~H~~~~~ 24 (340)
T PF01757_consen 9 GIAILLVVFGHSFIFY 24 (340)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4678899999998743
No 41
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=30.89 E-value=1.1e+02 Score=17.51 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 035418 5 QDLGFFANMLGIFLFVLVIAYHYVV 29 (37)
Q Consensus 5 ~qL~~la~~lG~~~m~LIV~YH~v~ 29 (37)
.+.+.+|..+..++|....+.|.+.
T Consensus 45 ~sieSIALl~~~~AfsgLL~lHLvv 69 (77)
T PF12292_consen 45 TSIESIALLFFCFAFSGLLFLHLVV 69 (77)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999864
No 42
>cd06550 TM_ABC_iron-siderophores_like Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal
Probab=30.82 E-value=1.1e+02 Score=19.00 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035418 2 IDDQDLGFFANMLGIFLFVLVIAYHYVVA 30 (37)
Q Consensus 2 IsD~qL~~la~~lG~~~m~LIV~YH~v~~ 30 (37)
++++|+........++..++...|+.+..
T Consensus 126 ~~~~dl~~~~~~~~i~~~~~~~~~~~l~~ 154 (261)
T cd06550 126 VTWEDLLILLIILLLVLLLLLLLSRKLNL 154 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 68899999999999999999999987764
No 43
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=30.63 E-value=1.2e+02 Score=17.99 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVV 29 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~ 29 (37)
|..+++.+|..+++|.+.|-.-.
T Consensus 78 LTaIVIg~a~tA~~Lal~~r~y~ 100 (114)
T PRK09094 78 LTAIVIGFAMTALFLVVALASRG 100 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999998886443
No 44
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=29.92 E-value=71 Score=18.73 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 035418 4 DQDLGFFANMLGIFLF 19 (37)
Q Consensus 4 D~qL~~la~~lG~~~m 19 (37)
|.||..||-.||++=+
T Consensus 3 ~~~L~rLAeiLGalHy 18 (96)
T PF09539_consen 3 DQQLLRLAEILGALHY 18 (96)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7899999999998733
No 45
>PF04021 Class_IIIsignal: Class III signal peptide; InterPro: IPR007166 This entry represents an amino terminal motif QXSXEXXXL thought to be part of a class III signal sequence for a family of archaeal proteins. The Q residue is the +1 residue of the signal peptidase cleavage site []. Two proteins containing this motif are cleaved by a type IV pilin-like signal peptidase.
Probab=28.95 E-value=71 Score=14.75 Aligned_cols=21 Identities=19% Similarity=0.616 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035418 7 LGFFANMLGIFLFVLVIAYHY 27 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~ 27 (37)
|...-.++++.++..++.|++
T Consensus 7 lE~~ili~~vlv~~~i~~~~~ 27 (28)
T PF04021_consen 7 LEFIILIAAVLVIAIIVIYYY 27 (28)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334455667777777777765
No 46
>PF15339 Afaf: Acrosome formation-associated factor
Probab=28.51 E-value=97 Score=20.66 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035418 4 DQDLGFFANMLGIFLFVLVIAY 25 (37)
Q Consensus 4 D~qL~~la~~lG~~~m~LIV~Y 25 (37)
|-|=-.+-..||+.+|.|+++-
T Consensus 124 ~le~~KlkLmLGIsLmTl~lfv 145 (200)
T PF15339_consen 124 ELEELKLKLMLGISLMTLFLFV 145 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788999999887653
No 47
>PRK13198 ureB urease subunit beta; Reviewed
Probab=28.15 E-value=21 Score=22.99 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=9.0
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++|+-.+
T Consensus 68 yHF~EvN~aL~ 78 (158)
T PRK13198 68 FHFFEVNRALE 78 (158)
T ss_pred cchhhcCcccc
Confidence 89999998653
No 48
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=28.13 E-value=68 Score=15.71 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=10.3
Q ss_pred CcHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANML 14 (37)
Q Consensus 2 IsD~qL~~la~~l 14 (37)
+||+|+..++-++
T Consensus 55 ls~~e~~~l~~yi 67 (67)
T PF13442_consen 55 LSDEEIEALAAYI 67 (67)
T ss_dssp STHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHC
Confidence 6899998888664
No 49
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=27.65 E-value=1.3e+02 Score=17.52 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVVAD 31 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~~n 31 (37)
|..+++.+++.+++++.+|.--...
T Consensus 78 LTaIVIg~Av~a~~lvl~~r~~~~~ 102 (117)
T PRK12659 78 LTAIVIGFGVQAFAIVLIKRAYQVV 102 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4556777777788888887665443
No 50
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=27.55 E-value=21 Score=23.77 Aligned_cols=11 Identities=9% Similarity=0.489 Sum_probs=8.8
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++||..+
T Consensus 149 yHF~E~N~aL~ 159 (208)
T PRK13192 149 FHFFEVNRALR 159 (208)
T ss_pred cchhhcCchhh
Confidence 89999998643
No 51
>PRK13205 ureB urease subunit beta; Reviewed
Probab=27.45 E-value=22 Score=23.02 Aligned_cols=10 Identities=10% Similarity=0.547 Sum_probs=8.6
Q ss_pred HHHHhccccc
Q 035418 25 YHYVVADAKY 34 (37)
Q Consensus 25 YH~v~~n~k~ 34 (37)
|||.++|+-.
T Consensus 40 yHF~EvN~AL 49 (162)
T PRK13205 40 FHFAEVNPSI 49 (162)
T ss_pred cchhhcCccc
Confidence 8999999854
No 52
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=27.41 E-value=1e+02 Score=20.59 Aligned_cols=29 Identities=21% Similarity=0.553 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cccc
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVVAD-AKYE 35 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~~n-~k~~ 35 (37)
|..+|=..=..|-+.|++|-|-++| .||.
T Consensus 18 m~TfADlmTLLm~FFVlL~S~S~~d~~Kfk 47 (302)
T PRK08944 18 LATFADLMSLLMCFFVLLLSFSEMDVLKFK 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 3455555666777889999999988 6654
No 53
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=27.28 E-value=1e+02 Score=17.05 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035418 9 FFANMLGIFLFVLVIAYHYV 28 (37)
Q Consensus 9 ~la~~lG~~~m~LIV~YH~v 28 (37)
.+.-++|...|..|++|-..
T Consensus 15 ~~iQffg~lv~agil~~~vy 34 (60)
T PF10841_consen 15 AFIQFFGALVMAGILIYCVY 34 (60)
T ss_pred HHHHHHHHHHHHHHHHhhee
Confidence 46678999999999988543
No 54
>PRK14781 lipoprotein signal peptidase; Provisional
Probab=27.22 E-value=1.2e+02 Score=18.30 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVVADAKYE 35 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~~n~k~~ 35 (37)
+...+++.|+++++ ++.+....+|++
T Consensus 126 vAD~~I~~Gv~lll---~~~~~~~~~~~~ 151 (153)
T PRK14781 126 LADVFVTTGVALLV---LGMLRPPKDPEN 151 (153)
T ss_pred HHHHHHHHHHHHHH---HHHHhccccccC
Confidence 45688999986443 345555445544
No 55
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=27.09 E-value=1.4e+02 Score=17.47 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035418 8 GFFANMLGIFLFVLVIAYHYV 28 (37)
Q Consensus 8 ~~la~~lG~~~m~LIV~YH~v 28 (37)
..+...+..|+.+++++.+|+
T Consensus 8 ~~~~~qli~Flil~~~l~kfl 28 (141)
T PRK08476 8 YLMLATFVVFLLLIVILNSWL 28 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777775
No 56
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=26.91 E-value=1.1e+02 Score=22.70 Aligned_cols=15 Identities=47% Similarity=0.665 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhc
Q 035418 16 IFLFVLVIAYHYVVA 30 (37)
Q Consensus 16 ~~~m~LIV~YH~v~~ 30 (37)
++...+|++||+.++
T Consensus 120 ~~LL~~ii~yHa~eI 134 (489)
T KOG3684|consen 120 IALLGLIIAYHAIEI 134 (489)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345668999999875
No 57
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=26.77 E-value=1.1e+02 Score=16.86 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035418 4 DQDLGFFANMLGIFLFVLVIAYHYVV 29 (37)
Q Consensus 4 D~qL~~la~~lG~~~m~LIV~YH~v~ 29 (37)
++++..++.+=|+++.+.|.+.=|+-
T Consensus 2 E~ei~k~~~sQG~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 2 EEEIIKLALSQGIFAVLFVWLLFYVL 27 (71)
T ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 46888899999999888887766654
No 58
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=26.03 E-value=1.6e+02 Score=18.88 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGIFLFVLVIAYHYV 28 (37)
Q Consensus 2 IsD~qL~~la~~lG~~~m~LIV~YH~v 28 (37)
+|++|+...+....++..++...|+-.
T Consensus 122 v~~~d~~~~~~~~~~~l~~~~~~~r~l 148 (257)
T PF00950_consen 122 VTRSDLWLLAVIAAVVLLFLLLFYREL 148 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999988854
No 59
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=25.79 E-value=1.1e+02 Score=18.58 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035418 9 FFANMLGIFLFVLVIAYHY 27 (37)
Q Consensus 9 ~la~~lG~~~m~LIV~YH~ 27 (37)
.+..++|+++++.+++|-.
T Consensus 121 i~~~i~g~ll~i~~giy~~ 139 (145)
T PF10661_consen 121 ILLSIGGILLAICGGIYVV 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777744
No 60
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=25.64 E-value=1e+02 Score=21.24 Aligned_cols=25 Identities=12% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVVAD 31 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~~n 31 (37)
|..+...|++++.+++++++++..|
T Consensus 5 lki~~~~l~~lvll~~~~~~~~~~~ 29 (604)
T PF05170_consen 5 LKILLIILAVLVLLVVALPFLLDPN 29 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 4456777788888888888887654
No 61
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=25.39 E-value=60 Score=21.09 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 035418 3 DDQDLGFFANMLGIFLFVLVIA 24 (37)
Q Consensus 3 sD~qL~~la~~lG~~~m~LIV~ 24 (37)
-|.-|+++.+||.-++|+..++
T Consensus 171 ~~~sl~r~~~f~~c~~~~~~~~ 192 (193)
T PLN03208 171 AEESLSRVYLFLLCFMFMCLFL 192 (193)
T ss_pred HhhhhhHHHHHHHHHHHHHHHh
Confidence 4778999999999888876665
No 62
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=25.12 E-value=1.5e+02 Score=17.21 Aligned_cols=23 Identities=26% Similarity=0.376 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVV 29 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~ 29 (37)
|..+++.+++.+++|+.+|---.
T Consensus 75 LTaIVIg~av~a~lL~l~~r~~~ 97 (114)
T PRK12660 75 LTAIVIGFGMTAFLLVLVYRTYK 97 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777888888888875443
No 63
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=25.10 E-value=24 Score=20.91 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Q 035418 10 FANMLGIFLFVLVIAYHYVVADAKY 34 (37)
Q Consensus 10 la~~lG~~~m~LIV~YH~v~~n~k~ 34 (37)
-.+.+|++.|+.|=+||-+....+|
T Consensus 4 ~Giiigi~tFliIG~fHpiVIk~EY 28 (94)
T PF14898_consen 4 TGIIIGIATFLIIGLFHPIVIKGEY 28 (94)
T ss_pred hhHHHHHHHHHHHHccCeEEEEEEE
Confidence 3567899999999999987765544
No 64
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=24.99 E-value=72 Score=18.69 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035418 10 FANMLGIFLFVLVIAYH 26 (37)
Q Consensus 10 la~~lG~~~m~LIV~YH 26 (37)
..-.||++++.+.+.|=
T Consensus 38 ~iM~~Gl~a~~~c~gYi 54 (86)
T PF14937_consen 38 PIMAFGLIAITLCVGYI 54 (86)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45579999999999984
No 65
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.93 E-value=1.4e+02 Score=19.42 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhccccccC
Q 035418 19 FVLVIAYHYVVADAKYEG 36 (37)
Q Consensus 19 m~LIV~YH~v~~n~k~~~ 36 (37)
.++..+|-.....|.|++
T Consensus 15 ~~~~~~y~~~~~~p~Y~s 32 (362)
T TIGR01010 15 TAISLLYFGIFASDRYVS 32 (362)
T ss_pred HHHHHHHHHHHhcccceE
Confidence 344456777778898875
No 66
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=24.90 E-value=81 Score=19.95 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHHHHH
Q 035418 3 DDQDLGFFANMLGIFLF 19 (37)
Q Consensus 3 sD~qL~~la~~lG~~~m 19 (37)
||.+|..+|..||.--|
T Consensus 127 td~El~dlAaILG~h~l 143 (147)
T PF03250_consen 127 TDAELCDLAAILGMHTL 143 (147)
T ss_pred cHHHHHHHHHHHhHHhh
Confidence 78999999999997544
No 67
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=24.90 E-value=1.3e+02 Score=17.93 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 035418 9 FFANMLGIFLFVLVIAYHYVVA 30 (37)
Q Consensus 9 ~la~~lG~~~m~LIV~YH~v~~ 30 (37)
.++-++.+..|+|.++.|.+.+
T Consensus 62 ~~CRsvAli~m~LLllRhal~l 83 (118)
T PF12428_consen 62 ACCRSVALIFMVLLLLRHALAL 83 (118)
T ss_pred eHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999884
No 68
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=24.38 E-value=1.1e+02 Score=15.54 Aligned_cols=10 Identities=20% Similarity=0.528 Sum_probs=8.6
Q ss_pred CcHHHHHHHH
Q 035418 2 IDDQDLGFFA 11 (37)
Q Consensus 2 IsD~qL~~la 11 (37)
|+|+|.+.++
T Consensus 7 i~e~~i~~~~ 16 (47)
T PF04688_consen 7 IDEEQINQLI 16 (47)
T ss_pred cCHHHHHHHH
Confidence 7899999886
No 69
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=24.31 E-value=58 Score=18.02 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHHH
Q 035418 3 DDQDLGFFANMLGI 16 (37)
Q Consensus 3 sD~qL~~la~~lG~ 16 (37)
||.+|..+|+-||.
T Consensus 3 ~d~~l~~ia~~LG~ 16 (84)
T cd08803 3 TDIRMAIVADHLGL 16 (84)
T ss_pred hHHHHHHHHHHhhc
Confidence 68889999998885
No 70
>PHA02054 hypothetical protein
Probab=24.30 E-value=51 Score=19.69 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=11.2
Q ss_pred HHHHHHHHHhccccc
Q 035418 20 VLVIAYHYVVADAKY 34 (37)
Q Consensus 20 ~LIV~YH~v~~n~k~ 34 (37)
+++.--|++++||.-
T Consensus 10 l~~a~~h~v~a~pe~ 24 (94)
T PHA02054 10 LLVATVHLVSANPEV 24 (94)
T ss_pred HHHHHhheeecCCCC
Confidence 445567999999963
No 71
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=23.92 E-value=1e+02 Score=14.86 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=10.4
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
++|++...++..|.+
T Consensus 74 ~~~~Ei~yl~~~~~~ 88 (89)
T PF00874_consen 74 LPDDEIAYLALHFES 88 (89)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC
Confidence 578888888877665
No 72
>PRK13986 urease subunit alpha; Provisional
Probab=23.85 E-value=27 Score=23.50 Aligned_cols=10 Identities=10% Similarity=0.444 Sum_probs=8.3
Q ss_pred HHHHhccccc
Q 035418 25 YHYVVADAKY 34 (37)
Q Consensus 25 YH~v~~n~k~ 34 (37)
|||.++|+-.
T Consensus 145 yHF~E~N~aL 154 (225)
T PRK13986 145 FHFFEVNRCL 154 (225)
T ss_pred cchhhcCchh
Confidence 8999999754
No 73
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=23.40 E-value=72 Score=17.41 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHH
Q 035418 3 DDQDLGFFANMLGIF 17 (37)
Q Consensus 3 sD~qL~~la~~lG~~ 17 (37)
++.+|..+|.-||.=
T Consensus 3 ~~~~l~~ia~~LG~d 17 (84)
T cd08804 3 KEERLAVIADHLGFS 17 (84)
T ss_pred hhhHHHHHHHHHhhh
Confidence 578899999998874
No 74
>PF07950 DUF1691: Protein of unknown function (DUF1691); InterPro: IPR012472 This family of fungal proteins is uncharacterised. Each protein contains two copies of this region.
Probab=23.10 E-value=1.4e+02 Score=16.82 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 035418 11 ANMLGIFLFVLVIAYHYVV 29 (37)
Q Consensus 11 a~~lG~~~m~LIV~YH~v~ 29 (37)
.+.+..++.+.++.||.++
T Consensus 40 ~~~~~~~~Lv~~~~~Hv~s 58 (110)
T PF07950_consen 40 FGILEYLLLVGSGVYHVVS 58 (110)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3457778888899999875
No 75
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=23.09 E-value=1.9e+02 Score=19.22 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035418 2 IDDQDLGFFANMLGIFLFVLVIAYHYVV 29 (37)
Q Consensus 2 IsD~qL~~la~~lG~~~m~LIV~YH~v~ 29 (37)
+|.+|+..++....+...+++..|+-+-
T Consensus 131 V~~~dl~~~~ii~~i~l~~l~lf~r~ll 158 (274)
T COG1108 131 VSRSDLLLIAIIGALVLLLLLLFYRELL 158 (274)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999989999999998654
No 76
>TIGR02701 shell_carb_anhy carboxysome shell carbonic anhydrase. This model describes a carboxysome shell protein that proves to be a novel class, designated epsilon, of carbonic anhydrase. It tends to be encoded near genes for RuBisCo and for other carboxysome shell proteins.
Probab=23.02 E-value=7.9 Score=28.31 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=11.8
Q ss_pred HHHHHHHhccccccC
Q 035418 22 VIAYHYVVADAKYEG 36 (37)
Q Consensus 22 IV~YH~v~~n~k~~~ 36 (37)
|+.|||-+++|..++
T Consensus 188 iavYHfSS~dP~hqG 202 (450)
T TIGR02701 188 IAVYHFSSSDPTHQG 202 (450)
T ss_pred EEEEeccCCCCCCCC
Confidence 578999999987654
No 77
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=22.67 E-value=1e+02 Score=19.85 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 035418 9 FFANMLGIFLFVLVIA 24 (37)
Q Consensus 9 ~la~~lG~~~m~LIV~ 24 (37)
..++..|+++++|.++
T Consensus 9 sv~i~igi~Ll~lLl~ 24 (158)
T PF11770_consen 9 SVAISIGISLLLLLLL 24 (158)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4578889988887665
No 78
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=22.33 E-value=1.4e+02 Score=17.59 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHHH---HHHHHHHHHHHhcccc
Q 035418 2 IDDQDLGFFANMLGIF---LFVLVIAYHYVVADAK 33 (37)
Q Consensus 2 IsD~qL~~la~~lG~~---~m~LIV~YH~v~~n~k 33 (37)
|+++.+..+|-.+|+. ..-.+=.||+....|+
T Consensus 32 i~~~~~~~iA~~l~~~~~~v~~v~tFY~~f~~~p~ 66 (148)
T TIGR01958 32 VTPEAIAAVAEMLGIPPVWVYEVATFYSMFDTEPV 66 (148)
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHhHHhhcCcCCC
Confidence 7889999999999974 3456677998887664
No 79
>PRK11564 stationary phase inducible protein CsiE; Provisional
Probab=22.06 E-value=1.1e+02 Score=20.29 Aligned_cols=18 Identities=28% Similarity=0.755 Sum_probs=15.7
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGIFLF 19 (37)
Q Consensus 2 IsD~qL~~la~~lG~~~m 19 (37)
|+|++.+.+|.-||+++-
T Consensus 314 i~edEi~yialhf~~~~e 331 (426)
T PRK11564 314 FSDEEVGLVAVIFGAWLM 331 (426)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 689999999999998764
No 80
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=21.98 E-value=1.6e+02 Score=16.51 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035418 9 FFANMLGIFLFVLVIAYHYV 28 (37)
Q Consensus 9 ~la~~lG~~~m~LIV~YH~v 28 (37)
++...+-.|+.+++++.+|+
T Consensus 7 t~~~~~i~flil~~ll~~~l 26 (140)
T PRK07353 7 TLPLMAVQFVLLTFILNALF 26 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554
No 81
>PLN02680 carbon-monoxide oxygenase
Probab=21.60 E-value=1.8e+02 Score=19.26 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 035418 9 FFANMLGIFLFVLVIAYHYVVADA 32 (37)
Q Consensus 9 ~la~~lG~~~m~LIV~YH~v~~n~ 32 (37)
.++|++|+...++-++-=+..++|
T Consensus 196 ~lvN~~gl~~~~fg~~V~~~v~~p 219 (232)
T PLN02680 196 MLVNSLGILIVVLGGFVILAIVTP 219 (232)
T ss_pred hhHhHHHHHHHHHHHHHHHhhccc
Confidence 489999988776544444444443
No 82
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=21.53 E-value=1e+02 Score=19.53 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 035418 10 FANMLGIFLFVLVIAY 25 (37)
Q Consensus 10 la~~lG~~~m~LIV~Y 25 (37)
+.+.+|+..|++++++
T Consensus 15 lv~a~g~l~~vllfIf 30 (186)
T PF07406_consen 15 LVIAYGSLVFVLLFIF 30 (186)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5677888888888775
No 83
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=21.52 E-value=78 Score=20.48 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 035418 14 LGIFLFVLVIAYHYVV 29 (37)
Q Consensus 14 lG~~~m~LIV~YH~v~ 29 (37)
+=.+++++||++|...
T Consensus 15 lR~~a~l~VV~~H~~~ 30 (375)
T PRK03854 15 IRAWLMLLGIPFHISL 30 (375)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457788999999854
No 84
>PF13282 DUF4070: Domain of unknown function (DUF4070)
Probab=21.10 E-value=1.3e+02 Score=17.94 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 035418 14 LGIFLFVLVIAYHYVVA 30 (37)
Q Consensus 14 lG~~~m~LIV~YH~v~~ 30 (37)
|-.++.+.++.|||...
T Consensus 118 l~~~i~~~~~g~Hf~~~ 134 (146)
T PF13282_consen 118 LPLAITLCIYGHHFRKY 134 (146)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66788899999999874
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.07 E-value=83 Score=13.27 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=8.5
Q ss_pred CcHHHHHHHHH
Q 035418 2 IDDQDLGFFAN 12 (37)
Q Consensus 2 IsD~qL~~la~ 12 (37)
|||.-+..++.
T Consensus 15 itD~gl~~l~~ 25 (26)
T smart00367 15 ITDEGLQALAK 25 (26)
T ss_pred cCHHHHHHHhc
Confidence 78888887763
No 86
>PRK12661 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.07 E-value=2.1e+02 Score=17.49 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 035418 7 LGFFANMLGIFLFVLVIAYHYVV 29 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~YH~v~ 29 (37)
|..+++.++..++.|.+.|-.-.
T Consensus 103 LTAIVIG~a~tA~~LaL~~r~y~ 125 (140)
T PRK12661 103 LTAIVIGLATTAFILILAYRIYE 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999886544
No 87
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=21.07 E-value=1.3e+02 Score=18.35 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHH
Q 035418 4 DQDLGFFANMLGIF 17 (37)
Q Consensus 4 D~qL~~la~~lG~~ 17 (37)
|.+|.+||-.||.+
T Consensus 28 ~~~L~rLAeiLG~l 41 (121)
T TIGR02301 28 DQRLLRLAEILGSL 41 (121)
T ss_pred hHHHHHHHHHHHHH
Confidence 78999999999986
No 88
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=20.98 E-value=1.1e+02 Score=16.35 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 035418 9 FFANMLGIFLFVLVIA 24 (37)
Q Consensus 9 ~la~~lG~~~m~LIV~ 24 (37)
.+.+.||++++++.+.
T Consensus 5 V~~iilg~~ll~~Lig 20 (49)
T PF05624_consen 5 VVLIILGALLLLLLIG 20 (49)
T ss_pred EeHHHHHHHHHHHHHH
Confidence 3567899988877664
No 89
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.85 E-value=1.9e+02 Score=16.88 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035418 8 GFFANMLGIFLFVLVIAYHYV 28 (37)
Q Consensus 8 ~~la~~lG~~~m~LIV~YH~v 28 (37)
+.+...+..|+.+++++++|+
T Consensus 9 ~~~~~~~i~Flil~~ll~~~l 29 (164)
T PRK14471 9 GLFFWQTILFLILLLLLAKFA 29 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666666777775
No 90
>KOG2693 consensus Putative zinc transporter [Inorganic ion transport and metabolism]
Probab=20.82 E-value=79 Score=22.71 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035418 7 LGFFANMLGIFLFVLVIAY 25 (37)
Q Consensus 7 L~~la~~lG~~~m~LIV~Y 25 (37)
+..+.+.+|..+|++|-+|
T Consensus 434 lq~~gil~G~~~ml~ia~~ 452 (453)
T KOG2693|consen 434 LQIFGILAGFTIMLLIALY 452 (453)
T ss_pred HHHHHHHhhhHHHhhhhcc
Confidence 6778899999999998766
No 91
>PRK02868 hypothetical protein; Provisional
Probab=20.74 E-value=2e+02 Score=19.15 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 035418 5 QDLGFFANMLGIFLFVLVIAYHYVVADAK 33 (37)
Q Consensus 5 ~qL~~la~~lG~~~m~LIV~YH~v~~n~k 33 (37)
+|+..+-..-=.++++-+++||++.-|.+
T Consensus 15 nq~~~i~~lsll~a~itv~i~~~~~p~~~ 43 (245)
T PRK02868 15 NQFITILLLSLLTAFITVLLGHAFSPSDE 43 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34444444444677888999999876643
No 92
>PRK01741 cell division protein ZipA; Provisional
Probab=20.73 E-value=73 Score=22.42 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 035418 6 DLGFFANMLGIFLFVLVIAYHYVVADAK 33 (37)
Q Consensus 6 qL~~la~~lG~~~m~LIV~YH~v~~n~k 33 (37)
+|+.+-+.||+++.+..|. |-+-+|-+
T Consensus 2 dLn~iliILg~lal~~Lv~-hgiWsnRr 28 (332)
T PRK01741 2 DLNTILIILGILALVALVA-HGIWSNRR 28 (332)
T ss_pred cceehHHHHHHHHHHHHHH-hhhhhhhh
Confidence 6889999999988765554 66666643
No 93
>PLN02810 carbon-monoxide oxygenase
Probab=20.72 E-value=2e+02 Score=19.18 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHhccccc
Q 035418 8 GFFANMLGIFLFVL--VIAYHYVVADAKY 34 (37)
Q Consensus 8 ~~la~~lG~~~m~L--IV~YH~v~~n~k~ 34 (37)
..++|++|+.+.++ +|+|=.+.-.|.+
T Consensus 194 a~lvN~~Glliv~fg~~V~~~~~~~~~~~ 222 (231)
T PLN02810 194 ALLVNFTAIITILYGAFVVLTALAQSPSD 222 (231)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 45899999876654 4445444433443
No 94
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=20.41 E-value=85 Score=21.11 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 035418 13 MLGIFLFVLVIAYHYVVAD 31 (37)
Q Consensus 13 ~lG~~~m~LIV~YH~v~~n 31 (37)
.=|.++|+|-++|.|-..+
T Consensus 218 VqGL~A~LLGicyef~~~~ 236 (312)
T PF04869_consen 218 VQGLCAFLLGICYEFSTKD 236 (312)
T ss_dssp HHHHHHHHHHHHHHT-S-S
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3589999999999998544
No 95
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=20.20 E-value=96 Score=16.92 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHHH
Q 035418 3 DDQDLGFFANMLGI 16 (37)
Q Consensus 3 sD~qL~~la~~lG~ 16 (37)
|++||..+|.-+|.
T Consensus 1 ~~~~l~~ia~~LG~ 14 (86)
T cd08779 1 TQSNLLSIAGRLGL 14 (86)
T ss_pred CchHHHHHHHHHhH
Confidence 46788888888885
No 96
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=20.19 E-value=64 Score=23.44 Aligned_cols=15 Identities=27% Similarity=0.673 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 035418 11 ANMLGIFLFVLVIAY 25 (37)
Q Consensus 11 a~~lG~~~m~LIV~Y 25 (37)
-+++|++||.+|++-
T Consensus 5 ~i~l~~~~Ft~i~l~ 19 (410)
T COG2871 5 EIILGIVMFTVIVLI 19 (410)
T ss_pred eeeHHHHHHHHHHHH
Confidence 367888888887764
No 97
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=20.00 E-value=1.6e+02 Score=20.30 Aligned_cols=22 Identities=14% Similarity=0.381 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035418 6 DLGFFANMLGIFLFVLVIAYHY 27 (37)
Q Consensus 6 qL~~la~~lG~~~m~LIV~YH~ 27 (37)
|++..-.-.++..|+++.+||-
T Consensus 52 ~~~~~~~~i~ai~~~~imI~~v 73 (293)
T PF12271_consen 52 NIGNIFLHIIAIIMTVIMIYHV 73 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666778899999999994
Done!