Query 035418
Match_columns 37
No_of_seqs 63 out of 65
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 03:58:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lat_A Dolichyl-diphosphooligo 99.9 3.1E-23 1.1E-27 105.1 4.2 36 1-36 1-36 (37)
2 1rkl_A Dolichyl-diphosphooligo 99.8 9.7E-22 3.3E-26 99.2 3.1 33 1-33 1-33 (36)
3 2zxy_A Cytochrome C552, cytoch 42.2 19 0.00064 16.9 2.0 14 2-15 71-84 (87)
4 2exv_A Cytochrome C-551; alpha 39.3 22 0.00075 16.7 2.0 14 2-15 66-79 (82)
5 1c75_A Cytochrome C-553; heme, 38.9 23 0.00078 16.5 2.0 14 2-15 55-68 (71)
6 2d0s_A Cytochrome C, cytochrom 38.0 24 0.00082 16.6 2.0 13 2-14 63-75 (79)
7 1ayg_A Cytochrome C-552; elect 37.8 24 0.00081 16.8 2.0 14 2-15 64-77 (80)
8 3dmi_A Cytochrome C6; electron 37.1 25 0.00086 16.6 2.0 15 2-16 67-81 (88)
9 3ph2_B Cytochrome C6; photosyn 37.0 25 0.00087 16.4 2.0 15 2-16 66-80 (86)
10 1kx2_A Mono-heme C-type cytoch 36.6 25 0.00085 17.0 2.0 13 2-14 65-77 (81)
11 3dr0_A Cytochrome C6; photosyn 35.6 26 0.0009 16.5 2.0 15 2-16 72-86 (93)
12 1f1f_A Cytochrome C6; heme, pr 35.2 28 0.00096 16.4 2.0 15 2-16 69-83 (89)
13 1cch_A Cytochrome C551; electr 35.2 28 0.00096 16.2 2.0 14 2-15 66-79 (82)
14 1cyi_A Cytochrome C6, cytochro 35.1 28 0.00095 16.6 2.0 15 2-16 67-81 (90)
15 4ep8_B Urease subunit beta; al 35.0 4.7 0.00016 23.4 -1.0 11 25-35 40-50 (101)
16 1wve_C 4-cresol dehydrogenase 35.0 28 0.00095 16.7 2.0 15 2-16 58-72 (80)
17 1jb0_M Photosystem 1 reaction 35.0 38 0.0013 15.7 3.6 9 1-9 2-10 (31)
18 1gdv_A Cytochrome C6; RED ALGA 34.9 29 0.00098 16.2 2.0 15 2-16 65-79 (85)
19 1a56_A C-551, ferricytochrome 34.5 32 0.0011 16.2 2.2 15 2-16 65-79 (81)
20 1c6r_A Cytochrome C6; electron 33.9 30 0.001 16.4 2.0 15 2-16 68-82 (89)
21 1cno_A Cytochrome C552; electr 33.4 30 0.001 16.6 2.0 14 2-15 67-80 (87)
22 1w2l_A Cytochrome oxidase subu 33.3 31 0.001 16.6 2.0 14 2-15 83-96 (99)
23 1cc5_A Cytochrome C5; electron 33.2 30 0.001 17.0 2.0 13 2-14 68-80 (83)
24 1gks_A Cytochrome C551; haloph 33.0 30 0.001 16.5 2.0 14 2-15 62-75 (78)
25 1jb0_A Photosystem I P700 chlo 33.0 63 0.0021 24.2 4.3 35 1-35 152-188 (755)
26 1c53_A Cytochrome C553; electr 32.9 30 0.001 16.4 2.0 14 2-15 64-77 (79)
27 3cu4_A Cytochrome C family pro 32.7 32 0.0011 16.3 2.0 15 2-16 68-82 (85)
28 1ls9_A Cytochrome C6; omega lo 32.4 33 0.0011 16.4 2.0 15 2-16 70-84 (91)
29 2zon_G Cytochrome C551; nitrit 32.0 33 0.0011 16.3 2.0 15 2-16 70-84 (87)
30 2l4d_A SCO1/SENC family protei 31.8 33 0.0011 16.8 2.0 15 2-16 81-95 (110)
31 2ce0_A Cytochrome C6; chloropl 29.3 37 0.0013 16.5 2.0 15 2-16 79-93 (105)
32 4ac7_B Urease subunit beta; hy 29.2 6.8 0.00023 23.4 -1.0 11 25-35 46-56 (126)
33 4ubp_B Protein (urease (chain 29.2 6.8 0.00023 23.4 -1.0 11 25-35 46-56 (126)
34 1h99_A Transcription antitermi 27.1 59 0.002 17.7 2.7 17 2-18 205-221 (224)
35 3dp5_A OMCF, cytochrome C fami 27.1 44 0.0015 16.8 2.0 13 2-14 82-94 (99)
36 1c52_A Cytochrome-C552; electr 27.0 42 0.0015 17.6 2.0 15 2-16 75-89 (131)
37 2zzs_A Cytochrome C554; C-type 26.5 46 0.0016 16.3 2.0 14 2-15 87-100 (103)
38 2akh_X Protein-export membrane 25.8 78 0.0027 16.4 4.1 28 4-31 49-76 (77)
39 1xrd_A LH-1, light-harvesting 25.0 79 0.0027 16.2 3.6 25 10-34 13-38 (52)
40 1f1c_A Cytochrome C549; dimeri 23.9 53 0.0018 16.6 2.0 15 2-16 105-119 (129)
41 2xvc_A ESCRT-III, SSO0910; cel 23.5 36 0.0012 18.0 1.3 10 1-10 9-18 (59)
42 3cp5_A Cytochrome C; electron 22.5 59 0.002 16.4 2.0 15 2-16 105-119 (124)
43 3o0r_C Nitric oxide reductase 22.3 58 0.002 17.1 2.0 14 2-15 117-130 (146)
44 1mz4_A Cytochrome C550; PSII a 22.3 59 0.002 17.0 2.0 15 2-16 107-121 (137)
45 1lgh_A LH II, B800/850, light 22.1 93 0.0032 16.0 2.9 22 13-34 21-43 (56)
46 4gy7_A Urease; JACK bean, hydr 22.0 12 0.00041 26.9 -1.0 11 25-35 171-181 (840)
No 1
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=99.88 E-value=3.1e-23 Score=105.13 Aligned_cols=36 Identities=50% Similarity=0.861 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 035418 1 MIDDQDLGFFANMLGIFLFVLVIAYHYVVADAKYEG 36 (37)
Q Consensus 1 MIsD~qL~~la~~lG~~~m~LIV~YH~v~~n~k~~~ 36 (37)
||||+||+.|||+||+++|+|||+|||+++|+|+.+
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVlYH~v~~n~~~~~ 36 (37)
T 2lat_A 1 MITDVQLAIFANMLGVSLFLLVVLYHYVAVNNPKKQ 36 (37)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 999999999999999999999999999999999864
No 2
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=99.84 E-value=9.7e-22 Score=99.23 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 035418 1 MIDDQDLGFFANMLGIFLFVLVIAYHYVVADAK 33 (37)
Q Consensus 1 MIsD~qL~~la~~lG~~~m~LIV~YH~v~~n~k 33 (37)
||||+||+.|||+||+++|+|||+|||+++|+.
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIvlYH~v~~n~~ 33 (36)
T 1rkl_A 1 MISDEQLNSLAITFGIVMMTLIVIYHAVDSTMS 33 (36)
T ss_dssp CCSSCGGGHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999964
No 3
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=42.17 E-value=19 Score=16.87 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=11.5
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
+||+|+..++.++-
T Consensus 71 ls~~ei~~l~~yl~ 84 (87)
T 2zxy_A 71 LSDAELKALADFIL 84 (87)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 58999999988763
No 4
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=39.33 E-value=22 Score=16.69 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=11.5
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
+||+|+..++.++-
T Consensus 66 ls~~ei~~l~~yl~ 79 (82)
T 2exv_A 66 VSDDEAQTLAKWVL 79 (82)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 58999999988763
No 5
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=38.91 E-value=23 Score=16.49 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=11.5
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
+||+|+..++.++-
T Consensus 55 ls~~ei~~l~~yl~ 68 (71)
T 1c75_A 55 AKGAEAEAVAAWLA 68 (71)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68999999888763
No 6
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=37.98 E-value=24 Score=16.63 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=11.0
Q ss_pred CcHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANML 14 (37)
Q Consensus 2 IsD~qL~~la~~l 14 (37)
+||+|+..++.++
T Consensus 63 Ls~~ei~~l~~yl 75 (79)
T 2d0s_A 63 VAEADIEKIVRWV 75 (79)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5899999988776
No 7
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=37.78 E-value=24 Score=16.75 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=11.9
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
.||+|+..++.++-
T Consensus 64 Lsd~ei~~l~~yl~ 77 (80)
T 1ayg_A 64 VTDAEAKQLAQWIL 77 (80)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68999999988874
No 8
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=37.15 E-value=25 Score=16.57 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=12.2
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 67 ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 67 LSDEEIANVAAYVLA 81 (88)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999887743
No 9
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=37.04 E-value=25 Score=16.40 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=12.2
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 66 ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 66 LTDDQIAAVAAYVLD 80 (86)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 589999999887744
No 10
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=36.61 E-value=25 Score=16.96 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=11.0
Q ss_pred CcHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANML 14 (37)
Q Consensus 2 IsD~qL~~la~~l 14 (37)
+||+|+..++.++
T Consensus 65 Lsd~ei~~l~~Yi 77 (81)
T 1kx2_A 65 CTDEDYKAAIEFM 77 (81)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6899999988875
No 11
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=35.62 E-value=26 Score=16.46 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.3
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 72 ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 72 LSDADIANVAAYIAD 86 (93)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 589999999888754
No 12
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=35.24 E-value=28 Score=16.42 Aligned_cols=15 Identities=7% Similarity=-0.084 Sum_probs=12.2
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 69 ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 69 LSPLQIEDVAAYVVD 83 (89)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999888743
No 13
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=35.18 E-value=28 Score=16.23 Aligned_cols=14 Identities=7% Similarity=0.254 Sum_probs=11.6
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
.||+|+..++.++-
T Consensus 66 ls~~ei~~l~~yl~ 79 (82)
T 1cch_A 66 VTEEEAKILAEWVL 79 (82)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 58999999988764
No 14
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=35.11 E-value=28 Score=16.59 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=12.4
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 67 ls~~ei~~l~~yl~~ 81 (90)
T 1cyi_A 67 LSEEEIQAVAEYVFK 81 (90)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 689999999888754
No 15
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=35.03 E-value=4.7 Score=23.37 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=9.0
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++||..+
T Consensus 40 yHF~E~N~aL~ 50 (101)
T 4ep8_B 40 YHFAEVNPALK 50 (101)
T ss_dssp SCGGGSCTTEE
T ss_pred cChhHcCccee
Confidence 89999998653
No 16
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=35.01 E-value=28 Score=16.74 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.0
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 58 ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 58 VDDESLTQVAEYLSS 72 (80)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999998887643
No 17
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=34.96 E-value=38 Score=15.75 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=7.2
Q ss_pred CCcHHHHHH
Q 035418 1 MIDDQDLGF 9 (37)
Q Consensus 1 MIsD~qL~~ 9 (37)
||||.|...
T Consensus 2 ~Isd~Qi~i 10 (31)
T 1jb0_M 2 ALTDTQVYV 10 (31)
T ss_dssp CCCHHHHHH
T ss_pred cchHHHHHH
Confidence 799999753
No 18
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=34.95 E-value=29 Score=16.16 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=12.5
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 65 ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 65 LVDEDIEDAANYVLS 79 (85)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999988754
No 19
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=34.46 E-value=32 Score=16.23 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=12.2
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 65 Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 65 VSDADAKALADWILT 79 (81)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 589999999988753
No 20
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=33.91 E-value=30 Score=16.37 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=12.3
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 68 ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 68 LDDDEIAAVAAYVYD 82 (89)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999888754
No 21
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=33.38 E-value=30 Score=16.61 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=11.5
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
.||+|+..++.++-
T Consensus 67 ls~~ei~~l~~yl~ 80 (87)
T 1cno_A 67 LSDADIANLAAYYA 80 (87)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68999999888763
No 22
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=33.26 E-value=31 Score=16.61 Aligned_cols=14 Identities=0% Similarity=0.373 Sum_probs=11.4
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
+||+|+..++.+|-
T Consensus 83 ls~~ei~~l~~yl~ 96 (99)
T 1w2l_A 83 LSEREVAALIEFIK 96 (99)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68999999888763
No 23
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=33.19 E-value=30 Score=17.04 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=11.1
Q ss_pred CcHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANML 14 (37)
Q Consensus 2 IsD~qL~~la~~l 14 (37)
.||+|+..++.++
T Consensus 68 Lsd~ei~~v~~yi 80 (83)
T 1cc5_A 68 CSDDELKAAIGKM 80 (83)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6899999988875
No 24
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=33.02 E-value=30 Score=16.52 Aligned_cols=14 Identities=21% Similarity=0.083 Sum_probs=11.4
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
.||+|+..++.++-
T Consensus 62 Lsd~ei~~l~~yi~ 75 (78)
T 1gks_A 62 ADREDLVKAIEYML 75 (78)
T ss_dssp BCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 58999999988763
No 25
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 3pcq_A* 2o01_A* 2wsc_A* 2wse_A* 2wsf_A* 3lw5_A*
Probab=32.96 E-value=63 Score=24.22 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHHHHHH--HHHHHHHHHHhcccccc
Q 035418 1 MIDDQDLGFFANMLGIFL--FVLVIAYHYVVADAKYE 35 (37)
Q Consensus 1 MIsD~qL~~la~~lG~~~--m~LIV~YH~v~~n~k~~ 35 (37)
|-|..||+..|+++=+.+ |+.---+||-..-||.+
T Consensus 152 itt~~~Ly~~ai~~li~a~l~L~aGw~H~hk~aP~l~ 188 (755)
T 1jb0_A 152 ITNEFQLYCTAIGGLVMAGLMLFAGWFHYHKRAPKLE 188 (755)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 568899999998754333 33333389887777753
No 26
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=32.93 E-value=30 Score=16.37 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=11.6
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
.||+|+..++.++-
T Consensus 64 Ls~~ei~~l~~Yl~ 77 (79)
T 1c53_A 64 YSDEEMKAMADYMS 77 (79)
T ss_pred CCHHHHHHHHHHHH
Confidence 58999999988764
No 27
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=32.71 E-value=32 Score=16.30 Aligned_cols=15 Identities=13% Similarity=-0.040 Sum_probs=12.2
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 68 ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 68 IPPADALKIGEYVVA 82 (85)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999887743
No 28
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=32.43 E-value=33 Score=16.44 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=12.3
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 70 ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 70 LDEDDIEAVSNYVYD 84 (91)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999888754
No 29
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=32.00 E-value=33 Score=16.33 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=12.1
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 70 ls~~ei~~l~~yl~~ 84 (87)
T 2zon_G 70 ADEATLRAAVAYMMD 84 (87)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999887743
No 30
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=31.81 E-value=33 Score=16.82 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=12.5
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.+|-.
T Consensus 81 Ls~~ei~~l~~yl~~ 95 (110)
T 2l4d_A 81 LGDAEVSALISYLEE 95 (110)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 589999999988754
No 31
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=29.32 E-value=37 Score=16.52 Aligned_cols=15 Identities=13% Similarity=0.558 Sum_probs=12.5
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 79 ls~~ei~~l~~yl~~ 93 (105)
T 2ce0_A 79 LQDEEIKLLAEFVKF 93 (105)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999988754
No 32
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=29.23 E-value=6.8 Score=23.42 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=8.9
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++||-.+
T Consensus 46 yHF~E~N~aL~ 56 (126)
T 4ac7_B 46 IHFVEVNKELL 56 (126)
T ss_dssp SCGGGSCTTEE
T ss_pred cchhhcCchhh
Confidence 89999998653
No 33
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=29.23 E-value=6.8 Score=23.42 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=8.9
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++||-.+
T Consensus 46 yHF~E~N~aL~ 56 (126)
T 4ubp_B 46 IHFVEVNKELL 56 (126)
T ss_dssp SCGGGSCTTEE
T ss_pred cchhhcCchhh
Confidence 89999998653
No 34
>1h99_A Transcription antiterminator LICT; transcriptional antiterminator, PTS regulatory domain; 1.55A {Bacillus subtilis} SCOP: a.142.1.1 a.142.1.1 PDB: 1tlv_A*
Probab=27.08 E-value=59 Score=17.74 Aligned_cols=17 Identities=6% Similarity=0.196 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGIFL 18 (37)
Q Consensus 2 IsD~qL~~la~~lG~~~ 18 (37)
|||++..-+|.-+|.++
T Consensus 205 i~~dEi~yl~lh~~~~~ 221 (224)
T 1h99_A 205 LTSDELLYLTIDIERVV 221 (224)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 78999999999988764
No 35
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=27.06 E-value=44 Score=16.83 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=11.2
Q ss_pred CcHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANML 14 (37)
Q Consensus 2 IsD~qL~~la~~l 14 (37)
+||+|+..++.++
T Consensus 82 Lsd~ei~~l~~Yi 94 (99)
T 3dp5_A 82 IPPADALKIGEYV 94 (99)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6899999998876
No 36
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=26.99 E-value=42 Score=17.62 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=12.3
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 75 Lsd~ei~~l~~Yl~~ 89 (131)
T 1c52_A 75 LKDEEIAAVLNHIAT 89 (131)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999988743
No 37
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=26.52 E-value=46 Score=16.32 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=11.5
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
+||+|+..++.++-
T Consensus 87 ls~~ei~~l~~yl~ 100 (103)
T 2zzs_A 87 LSDDDIANLAAYYS 100 (103)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 58999999888764
No 38
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=25.78 E-value=78 Score=16.44 Aligned_cols=28 Identities=7% Similarity=0.282 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035418 4 DQDLGFFANMLGIFLFVLVIAYHYVVAD 31 (37)
Q Consensus 4 D~qL~~la~~lG~~~m~LIV~YH~v~~n 31 (37)
++-|.++...++++.|++.++.-++..+
T Consensus 49 ~~~L~k~T~~la~~F~v~sl~l~~~~~~ 76 (77)
T 2akh_X 49 GNFMTRMTALLATLFFIISLVLGNINSN 76 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5668899999999999988887766543
No 39
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=24.97 E-value=79 Score=16.19 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh-ccccc
Q 035418 10 FANMLGIFLFVLVIAYHYVV-ADAKY 34 (37)
Q Consensus 10 la~~lG~~~m~LIV~YH~v~-~n~k~ 34 (37)
.-..++++.++|-++-||+- ++|+|
T Consensus 13 ~Lva~~~fl~vlAl~IHfilLSt~~f 38 (52)
T 1xrd_A 13 ALVGLATFLFVLALLIHFILLSTERF 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 34567889999999999986 33444
No 40
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=23.91 E-value=53 Score=16.61 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.5
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 105 Ls~~ei~~l~~Yl~~ 119 (129)
T 1f1c_A 105 ISEDDLYNVAGYILL 119 (129)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999888754
No 41
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=23.47 E-value=36 Score=18.00 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=7.8
Q ss_pred CCcHHHHHHH
Q 035418 1 MIDDQDLGFF 10 (37)
Q Consensus 1 MIsD~qL~~l 10 (37)
||||++|..-
T Consensus 9 ~~~e~~lL~y 18 (59)
T 2xvc_A 9 MITERELLDY 18 (59)
T ss_dssp CCCHHHHHHH
T ss_pred hccHHHHHHH
Confidence 8999888654
No 42
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=22.49 E-value=59 Score=16.37 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=12.3
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
+||+|+..++.++-.
T Consensus 105 Ls~~ei~~l~~Yl~~ 119 (124)
T 3cp5_A 105 LSEEQARAILEYLRQ 119 (124)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999998887754
No 43
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=22.30 E-value=58 Score=17.08 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=11.4
Q ss_pred CcHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLG 15 (37)
Q Consensus 2 IsD~qL~~la~~lG 15 (37)
+||+|+..++.++=
T Consensus 117 Ls~~ei~~l~ayl~ 130 (146)
T 3o0r_C 117 LSEGQVDDLAEFLK 130 (146)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 58999999888774
No 44
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=22.28 E-value=59 Score=17.00 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.7
Q ss_pred CcHHHHHHHHHHHHH
Q 035418 2 IDDQDLGFFANMLGI 16 (37)
Q Consensus 2 IsD~qL~~la~~lG~ 16 (37)
.||+|+..++.++-.
T Consensus 107 Lsd~ei~alaaYl~~ 121 (137)
T 1mz4_A 107 LTEKDLVAIAGHILV 121 (137)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999988754
No 45
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=22.10 E-value=93 Score=16.01 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHh-ccccc
Q 035418 13 MLGIFLFVLVIAYHYVV-ADAKY 34 (37)
Q Consensus 13 ~lG~~~m~LIV~YH~v~-~n~k~ 34 (37)
.++.+.+++-++-|++- +++++
T Consensus 21 ~l~~~v~vlAllIH~~lLs~~~f 43 (56)
T 1lgh_A 21 VIWIVATVVAIAVHAAVLAAPGF 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCc
Confidence 45667778888889876 55665
No 46
>4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A*
Probab=22.03 E-value=12 Score=26.90 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=9.0
Q ss_pred HHHHhcccccc
Q 035418 25 YHYVVADAKYE 35 (37)
Q Consensus 25 YH~v~~n~k~~ 35 (37)
|||.++||..+
T Consensus 171 ~hf~e~n~~l~ 181 (840)
T 4gy7_A 171 YHFIEVNPYLT 181 (840)
T ss_dssp SCGGGSCTTEE
T ss_pred cchhhcCcccc
Confidence 89999998654
Done!