Your job contains 1 sequence.
>035423
MENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035423
(35 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2163051 - symbol:NRPB12 species:3702 "Arabidop... 173 3.4e-13 1
WB|WBGene00009078 - symbol:rpb-12 species:6239 "Caenorhab... 134 4.7e-09 1
FB|FBgn0262954 - symbol:Rpb12 "Rpb12" species:7227 "Droso... 132 7.6e-09 1
UNIPROTKB|E1BW79 - symbol:LOC771626 "Uncharacterized prot... 127 2.6e-08 1
UNIPROTKB|Q3ZBC0 - symbol:POLR2K "DNA-directed RNA polyme... 127 2.6e-08 1
UNIPROTKB|P53803 - symbol:POLR2K "DNA-directed RNA polyme... 127 2.6e-08 1
UNIPROTKB|I3LN51 - symbol:POLR2K "Uncharacterized protein... 127 2.6e-08 1
RGD|2319895 - symbol:LOC100361574 "mCG145114-like" specie... 127 2.6e-08 1
UNIPROTKB|F1LTT4 - symbol:LOC100361574 "Protein LOC100361... 127 2.6e-08 1
ZFIN|ZDB-GENE-070820-18 - symbol:polr2k "polymerase (RNA)... 127 2.6e-08 1
ASPGD|ASPL0000017492 - symbol:AN11406 species:162425 "Eme... 125 4.2e-08 1
POMBASE|SPBC19C2.03 - symbol:rpc10 "DNA-directed RNA poly... 123 6.8e-08 1
UNIPROTKB|J9NXU3 - symbol:POLR2K "Uncharacterized protein... 121 1.1e-07 1
CGD|CAL0003902 - symbol:RPC10 species:5476 "Candida albic... 113 7.8e-07 1
UNIPROTKB|E1BU65 - symbol:E1BU65 "Uncharacterized protein... 111 1.3e-06 1
UNIPROTKB|E5RGX2 - symbol:POLR2K "DNA-directed RNA polyme... 111 1.3e-06 1
DICTYBASE|DDB_G0283365 - symbol:rpb12 "RNA polymerase, 7 ... 107 3.4e-06 1
TAIR|locus:2024907 - symbol:AT1G53690 species:3702 "Arabi... 107 3.4e-06 1
SGD|S000001185 - symbol:RPC10 "RNA polymerase subunit ABC... 102 1.1e-05 1
GENEDB_PFALCIPARUM|MAL13P1.213 - symbol:MAL13P1.213 "tran... 99 2.4e-05 1
UNIPROTKB|Q8IDR2 - symbol:MAL13P1.213 "Transcription acti... 99 2.4e-05 1
UNIPROTKB|G4NEH8 - symbol:MGG_11667 "Uncharacterized prot... 97 3.9e-05 1
>TAIR|locus:2163051 [details] [associations]
symbol:NRPB12 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IPI] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IPI] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] InterPro:IPR006591 Pfam:PF03604 SMART:SM00659
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AB010072 GO:GO:0000418 GO:GO:0000419
GO:GO:0005665 eggNOG:COG1996 KO:K03009 OMA:VIICREC
HOGENOM:HOG000191755 HSSP:P40422 EMBL:AY045954 EMBL:AY079307
EMBL:AY084743 IPI:IPI00526279 RefSeq:NP_198917.1 UniGene:At.6587
ProteinModelPortal:Q9FLM8 SMR:Q9FLM8 IntAct:Q9FLM8 STRING:Q9FLM8
PaxDb:Q9FLM8 PRIDE:Q9FLM8 EnsemblPlants:AT5G41010.1 GeneID:834103
KEGG:ath:AT5G41010 TAIR:At5g41010 InParanoid:Q9FLM8
PhylomeDB:Q9FLM8 ArrayExpress:Q9FLM8 Genevestigator:Q9FLM8
Uniprot:Q9FLM8
Length = 51
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 32/34 (94%), Positives = 33/34 (97%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 18 ENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>WB|WBGene00009078 [details] [associations]
symbol:rpb-12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040017 "positive
regulation of locomotion" evidence=IMP] [GO:0040015 "negative
regulation of multicellular organism growth" evidence=IMP]
InterPro:IPR006591 Pfam:PF03604 SMART:SM00659 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003677 GO:GO:0040017
GO:GO:0006351 GO:GO:0040035 GO:GO:0040015 GO:GO:0003899 EMBL:Z82266
GeneTree:ENSGT00390000008918 KO:K03009 HOGENOM:HOG000191755
OMA:VIYKART eggNOG:NOG238066 PIR:T21305 RefSeq:NP_501593.1
UniGene:Cel.13080 HSSP:P40422 ProteinModelPortal:Q9U3I0 SMR:Q9U3I0
STRING:Q9U3I0 PaxDb:Q9U3I0 EnsemblMetazoa:F23B2.13 GeneID:184886
KEGG:cel:CELE_F23B2.13 UCSC:F23B2.13 CTD:184886 WormBase:F23B2.13
InParanoid:Q9U3I0 NextBio:926294 Uniprot:Q9U3I0
Length = 62
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN +KP D I+CRECGYRILYKKR R+++ Y+AR
Sbjct: 29 ENEIKPKDAIRCRECGYRILYKKRCRKLMVYDAR 62
>FB|FBgn0262954 [details] [associations]
symbol:Rpb12 "Rpb12" species:7227 "Drosophila melanogaster"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;NAS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR006591 Pfam:PF03604 SMART:SM00659 EMBL:AE013599
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00390000008918 KO:K03009 OMA:VIICREC EMBL:BT030181
EMBL:BK003823 RefSeq:NP_001097319.1 UniGene:Dm.34782 SMR:Q6IGE3
STRING:Q6IGE3 EnsemblMetazoa:FBtr0112379 GeneID:5740790
KEGG:dme:Dmel_CG34186 UCSC:CG34186-RA CTD:5740790
FlyBase:FBgn0262954 eggNOG:NOG238066 InParanoid:Q6IGE3
OrthoDB:EOG4SJ3XP GenomeRNAi:5740790 NextBio:20891827
Uniprot:Q6IGE3
Length = 57
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 24 ENEMRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 57
>UNIPROTKB|E1BW79 [details] [associations]
symbol:LOC771626 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006591
Pfam:PF03604 SMART:SM00659 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GeneTree:ENSGT00390000008918 KO:K03009 OMA:VIICREC
EMBL:AADN02039231 IPI:IPI00684089 RefSeq:XP_001234883.2
Ensembl:ENSGALT00000030825 GeneID:771626 KEGG:gga:771626
NextBio:20918643 Uniprot:E1BW79
Length = 58
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 25 ENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>UNIPROTKB|Q3ZBC0 [details] [associations]
symbol:POLR2K "DNA-directed RNA polymerases I, II, and III
subunit RPABC4" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR006591
Pfam:PF03604 SMART:SM00659 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:BC103450
IPI:IPI00700918 RefSeq:NP_001032712.1 UniGene:Bt.62021
ProteinModelPortal:Q3ZBC0 SMR:Q3ZBC0 STRING:Q3ZBC0
Ensembl:ENSBTAT00000030510 GeneID:614776 KEGG:bta:614776 CTD:5440
eggNOG:COG1996 GeneTree:ENSGT00390000008918 HOVERGEN:HBG054239
InParanoid:Q3ZBC0 KO:K03009 OMA:VIICREC OrthoDB:EOG4M0F3F
NextBio:20899280 Uniprot:Q3ZBC0
Length = 58
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 25 ENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>UNIPROTKB|P53803 [details] [associations]
symbol:POLR2K "DNA-directed RNA polymerases I, II, and III
subunit RPABC4" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006356 "regulation of transcription
from RNA polymerase I promoter" evidence=TAS] [GO:0008270 "zinc ion
binding" evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR006591
Pfam:PF03604 SMART:SM00659 Reactome:REACT_116125 EMBL:CH471060
GO:GO:0005654 GO:GO:0016032 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Reactome:REACT_1675 GO:GO:0006368 GO:GO:0006367
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006356 GO:GO:0006370
GO:GO:0050434 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0006283 Reactome:REACT_1892 GO:GO:0003899 GO:GO:0006386
GO:GO:0006385 CTD:5440 eggNOG:COG1996 HOVERGEN:HBG054239 KO:K03009
OMA:VIICREC OrthoDB:EOG4M0F3F EMBL:Z47727 EMBL:AJ252078
EMBL:CR456870 EMBL:BC000806 EMBL:BC018157 IPI:IPI00023975
PIR:I37558 RefSeq:NP_005025.1 UniGene:Hs.351475
ProteinModelPortal:P53803 SMR:P53803 IntAct:P53803 STRING:P53803
DMDM:1710664 PRIDE:P53803 DNASU:5440 Ensembl:ENST00000353107
GeneID:5440 KEGG:hsa:5440 UCSC:uc003yjf.3 GeneCards:GC08P101162
HGNC:HGNC:9198 MIM:606033 neXtProt:NX_P53803 PharmGKB:PA33518
InParanoid:P53803 PhylomeDB:P53803 GenomeRNAi:5440 NextBio:21051
ArrayExpress:P53803 Bgee:P53803 CleanEx:HS_POLR2K
Genevestigator:P53803 GermOnline:ENSG00000147669 Uniprot:P53803
Length = 58
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 25 ENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>UNIPROTKB|I3LN51 [details] [associations]
symbol:POLR2K "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR006591
Pfam:PF03604 SMART:SM00659 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GeneTree:ENSGT00390000008918 KO:K03009 OMA:VIICREC
EMBL:CU462943 RefSeq:XP_003125601.1 RefSeq:XP_003355060.1
ProteinModelPortal:I3LN51 SMR:I3LN51 Ensembl:ENSSSCT00000025314
GeneID:100524560 KEGG:ssc:100524560 Uniprot:I3LN51
Length = 58
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 25 ENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>RGD|2319895 [details] [associations]
symbol:LOC100361574 "mCG145114-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006591
Pfam:PF03604 SMART:SM00659 RGD:2319895 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GeneTree:ENSGT00390000008918 IPI:IPI00210870
Ensembl:ENSRNOT00000013869 ArrayExpress:F1LZN9 Uniprot:F1LZN9
Length = 87
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 54 ENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 87
>UNIPROTKB|F1LTT4 [details] [associations]
symbol:LOC100361574 "Protein LOC100361574" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR006591 Pfam:PF03604 SMART:SM00659 RGD:2319895
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 IPI:IPI00947874
Ensembl:ENSRNOT00000067839 ArrayExpress:F1LTT4 Uniprot:F1LTT4
Length = 88
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 55 ENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 88
>ZFIN|ZDB-GENE-070820-18 [details] [associations]
symbol:polr2k "polymerase (RNA) II (DNA directed)
polypeptide K" species:7955 "Danio rerio" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006591 Pfam:PF03604 SMART:SM00659
ZFIN:ZDB-GENE-070820-18 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
CTD:5440 GeneTree:ENSGT00390000008918 KO:K03009 OMA:VIICREC
EMBL:FP236813 IPI:IPI00865824 RefSeq:NP_001186035.1
UniGene:Dr.87008 Ensembl:ENSDART00000111568 GeneID:796803
KEGG:dre:796803 NextBio:20932750 Uniprot:F1RDV9
Length = 58
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 25 ENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>ASPGD|ASPL0000017492 [details] [associations]
symbol:AN11406 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0001055
"RNA polymerase II activity" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006591 Pfam:PF03604 SMART:SM00659 GO:GO:0003677
GO:GO:0006351 EMBL:BN001302 GO:GO:0003899 HOGENOM:HOG000191755
EnsemblFungi:CADANIAT00005105 OMA:MSREAYQ Uniprot:C8V440
Length = 75
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 21/32 (65%), Positives = 30/32 (93%)
Query: 4 TLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
+LK GD I+C+ECG+R+LYK+RT+R+VQ+EAR
Sbjct: 44 SLKRGDQIRCKECGHRVLYKERTKRMVQFEAR 75
>POMBASE|SPBC19C2.03 [details] [associations]
symbol:rpc10 "DNA-directed RNA polymerase I, II and III
subunit Rpc10" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IGI]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IGI] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=IGI] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IGI] InterPro:IPR006591 Pfam:PF03604
SMART:SM00659 PomBase:SPBC19C2.03 GO:GO:0005829 GO:GO:0046872
GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006366
GO:GO:0006383 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
GO:GO:0003899 GO:GO:0005665 PDB:3H0G PDBsum:3H0G eggNOG:COG1996
KO:K03009 EMBL:U20867 EMBL:U80217 EMBL:AF027819 EMBL:D89634
PIR:T43546 PIR:T52536 RefSeq:NP_595688.1 ProteinModelPortal:P48011
IntAct:P48011 MINT:MINT-1214266 STRING:P48011
EnsemblFungi:SPBC19C2.03.1 GeneID:2540793 KEGG:spo:SPBC19C2.03
HOGENOM:HOG000191755 OMA:QENEIRS OrthoDB:EOG46MFVD
EvolutionaryTrace:P48011 NextBio:20801911 Uniprot:P48011
Length = 63
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 20/33 (60%), Positives = 30/33 (90%)
Query: 3 NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
NT++ +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 31 NTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63
>UNIPROTKB|J9NXU3 [details] [associations]
symbol:POLR2K "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006591 Pfam:PF03604 SMART:SM00659 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GeneTree:ENSGT00390000008918
OMA:VIICREC EMBL:AAEX03005652 Ensembl:ENSCAFT00000049016
Uniprot:J9NXU3
Length = 58
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 20/34 (58%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
EN +K D I+CRECGY+I+YKKRT+R++ ++AR
Sbjct: 25 ENEIKSRDPIRCRECGYKIMYKKRTKRLLVFDAR 58
>CGD|CAL0003902 [details] [associations]
symbol:RPC10 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IEA]
InterPro:IPR006591 Pfam:PF03604 SMART:SM00659 CGD:CAL0003902
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AACQ01000092
eggNOG:COG1996 KO:K03009 RefSeq:XP_715053.1
ProteinModelPortal:Q59ZT6 SMR:Q59ZT6 STRING:Q59ZT6 GeneID:3643292
KEGG:cal:CaO19.7255 Uniprot:Q59ZT6
Length = 102
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 4 TLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
+L D I+C+ECG+R++YK RT+R+VQ+EAR
Sbjct: 71 SLSKSDTIRCKECGHRVIYKARTKRMVQFEAR 102
>UNIPROTKB|E1BU65 [details] [associations]
symbol:E1BU65 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR006591
Pfam:PF03604 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GeneTree:ENSGT00390000008918 EMBL:AADN02025094 IPI:IPI00577405
Ensembl:ENSGALT00000025828 OMA:TKRLVIF Uniprot:E1BU65
Length = 58
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIV 30
EN +K D I+CRECGYRI+YKKRT+R +
Sbjct: 25 ENEIKARDPIRCRECGYRIMYKKRTKRCI 53
>UNIPROTKB|E5RGX2 [details] [associations]
symbol:POLR2K "DNA-directed RNA polymerases I, II, and III
subunit RPABC4" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR006591 Pfam:PF03604 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 HGNC:HGNC:9198 EMBL:AC025647
IPI:IPI00974493 ProteinModelPortal:E5RGX2 SMR:E5RGX2
Ensembl:ENST00000522439 ArrayExpress:E5RGX2 Bgee:E5RGX2
Uniprot:E5RGX2
Length = 67
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIV 30
EN +K D I+CRECGYRI+YKKRT+R +
Sbjct: 25 ENEIKSRDPIRCRECGYRIMYKKRTKRCI 53
>DICTYBASE|DDB_G0283365 [details] [associations]
symbol:rpb12 "RNA polymerase, 7 kDa subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR006591 Pfam:PF03604
dictyBase:DDB_G0283365 GenomeReviews:CM000153_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0006383 GO:GO:0006360
EMBL:AAFI02000054 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
GO:GO:0005665 eggNOG:COG1996 KO:K03009 RefSeq:XP_639117.1
ProteinModelPortal:Q54R66 STRING:Q54R66 PRIDE:Q54R66
EnsemblProtists:DDB0216300 GeneID:8624050 KEGG:ddi:DDB_G0283365
Uniprot:Q54R66
Length = 46
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 16/34 (47%), Positives = 29/34 (85%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
E+ +KP + ++C++C +RI+YKKRT +++Q+EAR
Sbjct: 13 EHEIKPKEPVKCKDCTHRIMYKKRTDKMIQFEAR 46
>TAIR|locus:2024907 [details] [associations]
symbol:AT1G53690 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009860 "pollen tube growth"
evidence=IEP] InterPro:IPR006591 Pfam:PF03604 SMART:SM00659
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677 GO:GO:0006351
GO:GO:0009860 EMBL:AC024260 GO:GO:0003899 eggNOG:COG1996 KO:K03009
HOGENOM:HOG000191755 IPI:IPI00542843 PIR:B96577 RefSeq:NP_175773.1
UniGene:At.52185 ProteinModelPortal:Q9C8M4 SMR:Q9C8M4 STRING:Q9C8M4
EnsemblPlants:AT1G53690.1 GeneID:841806 KEGG:ath:AT1G53690
TAIR:At1g53690 InParanoid:Q9C8M4 PhylomeDB:Q9C8M4
Genevestigator:Q9C8M4 Uniprot:Q9C8M4
Length = 61
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 2 ENTLKPGDVIQCRECGYRILYKKR 25
EN LK GDV QCR+CG+RILYKKR
Sbjct: 27 ENILKRGDVFQCRDCGFRILYKKR 50
>SGD|S000001185 [details] [associations]
symbol:RPC10 "RNA polymerase subunit ABC10-alpha, found in
RNA pol I, II, and III" species:4932 "Saccharomyces cerevisiae"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0001055 "RNA polymerase II activity" evidence=IDA] [GO:0001054
"RNA polymerase I activity" evidence=IC] [GO:0001056 "RNA
polymerase III activity" evidence=IC] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IMP] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=IGI;IMP]
InterPro:IPR006591 Pfam:PF03604 SMART:SM00659 SGD:S000001185
GO:GO:0046872 GO:GO:0003677 EMBL:BK006934 GO:GO:0006366 EMBL:U10397
GO:GO:0006383 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 GO:GO:0005665 PDB:1I3Q PDB:1I50
PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S
PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH
PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K
PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8
PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92
PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ
PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V
PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M
PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3
PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17
PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B
PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J
PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q
PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9
PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO
PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH
PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77
PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J
PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ
PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z
PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ
PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL
PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V
PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A
PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1
PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16
PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R
PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
PDBsum:4BBS Reactome:REACT_87991 eggNOG:COG1996 KO:K03009
HOGENOM:HOG000191755 OrthoDB:EOG46MFVD EMBL:U23378 EMBL:AY558549
PIR:S58932 RefSeq:NP_012013.1 ProteinModelPortal:P40422 SMR:P40422
DIP:DIP-936N IntAct:P40422 MINT:MINT-559375 STRING:P40422
PaxDb:P40422 PeptideAtlas:P40422 EnsemblFungi:YHR143W-A
GeneID:856547 KEGG:sce:YHR143W-A CYGD:YHR143w-a OMA:VIYKART
EvolutionaryTrace:P40422 NextBio:982349 Genevestigator:P40422
GermOnline:YHR143W-A Uniprot:P40422
Length = 70
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 4 TLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
+L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 39 SLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70
>GENEDB_PFALCIPARUM|MAL13P1.213 [details] [associations]
symbol:MAL13P1.213 "transcription activator,
putative" species:5833 "Plasmodium falciparum" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR006591 Pfam:PF03604 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL844509 GO:GO:0003899 KO:K03009
HOGENOM:HOG000191755 RefSeq:XP_001350148.1
ProteinModelPortal:Q8IDR2 EnsemblProtists:MAL13P1.213:mRNA
GeneID:813770 KEGG:pfa:MAL13P1.213 EuPathDB:PlasmoDB:PF3D7_1342700
OMA:CHTENDI ProtClustDB:CLSZ2514528 Uniprot:Q8IDR2
Length = 58
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 1 MENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
++ + P ++C+ CG +I +KKR+RR++QYEAR
Sbjct: 24 IDTVIPPNASLRCKNCGSKIFFKKRSRRVMQYEAR 58
>UNIPROTKB|Q8IDR2 [details] [associations]
symbol:MAL13P1.213 "Transcription activator, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR006591 Pfam:PF03604
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL844509
GO:GO:0003899 KO:K03009 HOGENOM:HOG000191755 RefSeq:XP_001350148.1
ProteinModelPortal:Q8IDR2 EnsemblProtists:MAL13P1.213:mRNA
GeneID:813770 KEGG:pfa:MAL13P1.213 EuPathDB:PlasmoDB:PF3D7_1342700
OMA:CHTENDI ProtClustDB:CLSZ2514528 Uniprot:Q8IDR2
Length = 58
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 1 MENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35
++ + P ++C+ CG +I +KKR+RR++QYEAR
Sbjct: 24 IDTVIPPNASLRCKNCGSKIFFKKRSRRVMQYEAR 58
>UNIPROTKB|G4NEH8 [details] [associations]
symbol:MGG_11667 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006591 Pfam:PF03604 EMBL:CM001235
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03009
RefSeq:XP_003719039.1 ProteinModelPortal:G4NEH8
EnsemblFungi:MGG_11667T0 GeneID:5050833 KEGG:mgr:MGG_11667
Uniprot:G4NEH8
Length = 76
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 9 DVIQCRECGYRILYKKRTRRIVQYEAR 35
D I+C ECG R+LYK RT R++++EAR
Sbjct: 50 DPIRCTECGCRVLYKNRTNRMIEFEAR 76
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.327 0.142 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 35 35 0.00091 102 3 11 22 0.36 25
29 0.44 22
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 371 (40 KB)
Total size of DFA: 61 KB (2059 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 4.61u 0.14s 4.75t Elapsed: 00:00:00
Total cpu time: 4.61u 0.14s 4.75t Elapsed: 00:00:00
Start: Mon May 20 18:08:53 2013 End: Mon May 20 18:08:53 2013