Query 035423
Match_columns 35
No_of_seqs 100 out of 153
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_L DNA-directed RNA polyme 99.8 8.8E-21 3E-25 98.5 1.7 35 1-35 29-63 (63)
2 1twf_L ABC10-alpha, DNA-direct 99.7 3.9E-19 1.3E-23 93.2 1.3 34 2-35 37-70 (70)
3 4ayb_P DNA-directed RNA polyme 99.5 1.4E-14 4.9E-19 72.2 2.9 33 2-34 15-47 (48)
4 3na7_A HP0958; flagellar bioge 96.0 0.0034 1.2E-07 37.2 2.1 19 7-26 219-237 (256)
5 2odx_A Cytochrome C oxidase po 93.7 0.047 1.6E-06 28.6 2.4 15 5-19 51-65 (80)
6 1v54_F VI, cytochrome C oxidas 92.9 0.055 1.9E-06 29.2 1.9 17 5-23 74-90 (98)
7 2lcq_A Putative toxin VAPC6; P 91.8 0.077 2.6E-06 29.3 1.7 17 9-25 147-163 (165)
8 2jvm_A Uncharacterized protein 91.7 0.11 3.6E-06 27.6 2.0 17 7-23 50-66 (80)
9 2y69_F Cytochrome C oxidase su 91.1 0.11 3.9E-06 29.4 1.9 15 5-19 105-119 (129)
10 2jrr_A Uncharacterized protein 90.6 0.13 4.5E-06 26.3 1.7 17 7-23 37-53 (67)
11 2jz8_A Uncharacterized protein 90.5 0.13 4.4E-06 27.6 1.7 20 5-24 43-62 (87)
12 2i5o_A DNA polymerase ETA; zin 88.5 0.29 1E-05 22.6 1.9 20 4-23 3-22 (39)
13 1hxr_A Guanine nucleotide exch 87.0 0.35 1.2E-05 26.5 1.9 19 6-24 8-26 (115)
14 1qyp_A RNA polymerase II; tran 86.5 0.31 1.1E-05 23.1 1.4 13 10-22 15-27 (57)
15 1gh9_A 8.3 kDa protein (gene M 84.3 0.27 9.3E-06 25.1 0.6 18 9-27 20-37 (71)
16 1tfi_A Transcriptional elongat 82.8 0.45 1.5E-05 22.6 1.0 14 8-21 7-20 (50)
17 1pft_A TFIIB, PFTFIIBN; N-term 79.7 1.3 4.4E-05 20.3 1.9 15 11-25 6-21 (50)
18 1rik_A E6APC1 peptide; E6-bind 78.0 1.1 3.8E-05 16.4 1.2 10 10-19 2-11 (29)
19 1vq8_Z 50S ribosomal protein L 77.3 0.58 2E-05 24.4 0.3 21 4-24 21-41 (83)
20 2kvh_A Zinc finger and BTB dom 76.9 1.2 4.3E-05 16.2 1.2 10 10-19 3-12 (27)
21 1dl6_A Transcription factor II 76.4 1.2 4.1E-05 21.5 1.3 15 9-23 10-25 (58)
22 3h0g_I DNA-directed RNA polyme 75.9 1.3 4.3E-05 23.7 1.5 10 10-19 72-81 (113)
23 2kvf_A Zinc finger and BTB dom 73.9 1.7 5.9E-05 15.8 1.3 10 10-19 3-12 (28)
24 3j20_Y 30S ribosomal protein S 73.1 2.7 9.1E-05 19.9 2.1 13 12-24 21-33 (50)
25 2m0d_A Zinc finger and BTB dom 73.0 1.6 5.6E-05 15.8 1.1 10 10-19 3-12 (30)
26 2gag_D Heterotetrameric sarcos 72.3 0.89 3E-05 24.7 0.3 10 10-19 3-12 (99)
27 2kvg_A Zinc finger and BTB dom 71.9 1.4 4.9E-05 16.2 0.8 10 10-19 3-12 (27)
28 2m0e_A Zinc finger and BTB dom 71.7 1.4 4.7E-05 15.9 0.7 10 10-19 2-11 (29)
29 3o9x_A Uncharacterized HTH-typ 71.5 1.8 6.1E-05 22.4 1.3 12 11-22 3-14 (133)
30 2lvu_A Zinc finger and BTB dom 73.3 0.88 3E-05 16.5 0.0 12 10-21 2-13 (26)
31 2m0f_A Zinc finger and BTB dom 69.8 2.1 7.1E-05 15.4 1.1 10 10-19 2-11 (29)
32 1znf_A 31ST zinc finger from X 69.7 1.8 6.1E-05 15.5 0.8 9 11-19 2-10 (27)
33 1klr_A Zinc finger Y-chromosom 69.6 1.6 5.5E-05 15.8 0.7 10 10-19 2-11 (30)
34 1paa_A Yeast transcription fac 68.7 1.9 6.3E-05 15.8 0.8 10 10-19 2-11 (30)
35 1p7a_A BF3, BKLF, kruppel-like 68.5 1.9 6.6E-05 16.8 0.9 11 9-19 10-20 (37)
36 3po3_S Transcription elongatio 67.9 1.6 5.5E-05 25.1 0.7 14 8-21 135-148 (178)
37 1ard_A Yeast transcription fac 67.8 2.1 7.2E-05 15.5 0.9 10 10-19 2-11 (29)
38 3j21_g 50S ribosomal protein L 67.1 2.3 7.7E-05 20.5 1.1 11 9-19 27-37 (51)
39 2l8e_A Polyhomeotic-like prote 67.1 4.2 0.00014 19.3 2.1 12 11-22 19-30 (49)
40 1kaf_A Transcription regulator 66.5 5 0.00017 22.2 2.5 18 18-35 35-52 (108)
41 2elt_A Zinc finger protein 406 66.1 5.2 0.00018 15.2 2.1 12 8-19 7-18 (36)
42 3r8s_0 50S ribosomal protein L 66.1 5.2 0.00018 19.3 2.3 16 5-20 21-37 (56)
43 2poi_A Baculoviral IAP repeat- 66.0 3.2 0.00011 21.7 1.6 14 7-20 52-65 (94)
44 2elx_A Zinc finger protein 406 65.9 3.1 0.00011 15.8 1.3 11 9-19 6-16 (35)
45 2elq_A Zinc finger protein 406 65.8 3 0.0001 16.1 1.2 13 8-20 7-19 (36)
46 2l7x_A Envelope glycoprotein; 65.4 1.8 6E-05 22.8 0.5 10 11-20 31-40 (77)
47 1ef4_A Subunit N, DNA-directed 65.3 1.6 5.5E-05 21.6 0.3 12 9-20 2-13 (55)
48 1lv3_A Hypothetical protein YA 65.2 4.3 0.00015 20.6 2.0 18 6-23 5-22 (68)
49 1l8d_A DNA double-strand break 65.1 3.5 0.00012 21.2 1.6 11 10-20 47-57 (112)
50 1srk_A Zinc finger protein ZFP 65.1 3.3 0.00011 15.8 1.3 12 9-20 6-17 (35)
51 2els_A Zinc finger protein 406 65.1 4.8 0.00017 15.5 1.8 12 8-19 7-18 (36)
52 2elp_A Zinc finger protein 406 64.3 3.4 0.00011 16.1 1.2 12 9-20 8-19 (37)
53 3ga8_A HTH-type transcriptiona 64.1 3.2 0.00011 20.4 1.3 12 11-22 3-14 (78)
54 1twf_I B12.6, DNA-directed RNA 63.5 2.9 9.8E-05 22.5 1.2 10 10-19 72-81 (122)
55 2ct7_A Ring finger protein 31; 63.2 7.2 0.00024 19.5 2.6 15 7-21 21-36 (86)
56 2kdx_A HYPA, hydrogenase/ureas 63.0 1.9 6.6E-05 22.8 0.4 13 10-22 89-102 (119)
57 2gmg_A Hypothetical protein PF 62.4 2.9 0.0001 22.8 1.1 12 8-19 82-93 (105)
58 2qkd_A Zinc finger protein ZPR 62.4 2.9 9.9E-05 27.0 1.2 10 10-19 41-50 (404)
59 2elv_A Zinc finger protein 406 62.4 4 0.00014 15.7 1.3 12 8-19 7-18 (36)
60 3d9t_A Baculoviral IAP repeat- 62.3 4.4 0.00015 21.1 1.8 14 7-20 45-58 (97)
61 2elm_A Zinc finger protein 406 61.5 3.9 0.00013 16.1 1.2 12 9-20 8-19 (37)
62 2qra_D XIAP, baculoviral IAP r 61.3 4.3 0.00015 22.0 1.6 15 6-20 68-82 (111)
63 2kfq_A FP1; protein, de novo p 61.1 2.4 8.1E-05 16.3 0.4 10 10-19 2-11 (32)
64 1twf_J DNA-directed RNA polyme 61.1 2.5 8.5E-05 21.7 0.6 12 9-20 3-14 (70)
65 1dxg_A Desulforedoxin; non-hem 60.9 9 0.00031 16.6 2.4 17 6-22 2-18 (36)
66 3a43_A HYPD, hydrogenase nicke 60.7 3 0.0001 22.9 0.9 13 10-22 107-119 (139)
67 1rim_A E6APC2 peptide; E6-bind 59.8 3.2 0.00011 16.1 0.8 10 10-19 2-11 (33)
68 3m1d_A Baculoviral IAP repeat- 59.8 5.3 0.00018 20.4 1.8 14 7-20 43-56 (85)
69 3fac_A Putative uncharacterize 59.4 11 0.00039 19.4 3.0 15 11-25 68-82 (118)
70 3v2d_5 50S ribosomal protein L 59.3 5.8 0.0002 19.4 1.8 14 5-18 25-38 (60)
71 2lvt_A Zinc finger and BTB dom 63.5 2 6.8E-05 15.7 0.0 11 10-20 2-12 (29)
72 2d9k_A FLN29 gene product; zin 58.7 5.8 0.0002 18.8 1.7 12 9-20 42-53 (75)
73 6rxn_A Rubredoxin; electron tr 58.5 4.7 0.00016 18.9 1.3 8 11-18 5-12 (46)
74 2k4x_A 30S ribosomal protein S 58.4 4.7 0.00016 19.3 1.3 17 8-24 34-50 (55)
75 2lvr_A Zinc finger and BTB dom 62.8 2.1 7.2E-05 15.6 0.0 11 10-20 3-13 (30)
76 1njq_A Superman protein; zinc- 57.9 5.2 0.00018 15.8 1.3 11 9-19 5-15 (39)
77 2con_A RUH-035 protein, NIN on 57.6 3.9 0.00013 21.2 1.0 18 7-24 27-44 (79)
78 2elo_A Zinc finger protein 406 57.2 3.4 0.00012 16.0 0.6 11 9-19 8-18 (37)
79 2en2_A B-cell lymphoma 6 prote 57.1 5.4 0.00018 15.9 1.3 13 8-20 9-21 (42)
80 1g73_C Inhibitors of apoptosis 57.1 6 0.00021 21.6 1.8 15 6-20 56-70 (121)
81 3hl5_A Baculoviral IAP repeat- 57.0 6.2 0.00021 20.5 1.8 14 7-20 43-56 (95)
82 2epc_A Zinc finger protein 32; 56.6 5.6 0.00019 15.7 1.3 12 8-19 9-20 (42)
83 2elr_A Zinc finger protein 406 56.1 4.5 0.00015 15.4 0.9 12 8-19 7-18 (36)
84 1lko_A Rubrerythrin all-iron(I 56.0 3.6 0.00012 23.4 0.7 10 10-19 155-164 (191)
85 2vm5_A Baculoviral IAP repeat- 56.0 6 0.00021 21.0 1.6 15 6-20 52-66 (106)
86 1qxf_A GR2, 30S ribosomal prot 55.5 4.7 0.00016 20.5 1.1 11 9-19 6-16 (66)
87 1jd5_A DIAP1, apoptosis 1 inhi 55.3 7.5 0.00026 21.4 2.0 14 7-20 57-70 (124)
88 3j20_W 30S ribosomal protein S 55.3 4.8 0.00016 20.3 1.1 11 9-19 14-24 (63)
89 2emb_A Zinc finger protein 473 55.2 6 0.00021 15.9 1.3 11 9-19 11-21 (44)
90 1se0_A Apoptosis 1 inhibitor; 54.9 6.9 0.00024 21.2 1.8 14 7-20 45-58 (116)
91 2zjr_Z 50S ribosomal protein L 54.6 7.8 0.00027 18.9 1.8 15 5-19 25-39 (60)
92 2akl_A PHNA-like protein PA012 54.6 4.7 0.00016 23.2 1.1 14 6-19 40-53 (138)
93 2qfa_A Baculoviral IAP repeat- 54.4 6.9 0.00024 21.6 1.8 13 8-20 52-64 (142)
94 2eow_A Zinc finger protein 347 54.3 6.4 0.00022 16.0 1.3 12 8-19 10-21 (46)
95 3pwf_A Rubrerythrin; non heme 53.9 6.8 0.00023 22.1 1.7 12 8-19 136-147 (170)
96 2ept_A Zinc finger protein 32; 53.8 6.6 0.00023 15.5 1.3 12 8-19 8-19 (41)
97 1e8j_A Rubredoxin; iron-sulfur 53.7 6.8 0.00023 18.6 1.4 8 11-18 4-11 (52)
98 3cng_A Nudix hydrolase; struct 53.6 5.7 0.00019 21.5 1.3 14 11-24 4-17 (189)
99 2kn9_A Rubredoxin; metalloprot 53.4 7 0.00024 20.3 1.6 13 7-19 24-36 (81)
100 2epv_A Zinc finger protein 268 53.2 6.8 0.00023 15.9 1.3 12 8-19 10-21 (44)
101 2epq_A POZ-, at HOOK-, and zin 52.9 4.4 0.00015 16.5 0.6 8 10-17 38-45 (45)
102 2yrj_A Zinc finger protein 473 52.7 7 0.00024 15.8 1.3 12 8-19 10-21 (46)
103 2emj_A Zinc finger protein 28 52.5 6.8 0.00023 16.0 1.2 12 8-19 10-21 (46)
104 2yu5_A Zinc finger protein 473 52.5 6.9 0.00023 15.8 1.2 11 9-19 11-21 (44)
105 2riq_A Poly [ADP-ribose] polym 52.0 6.4 0.00022 22.6 1.4 17 8-24 76-92 (160)
106 3siq_A Apoptosis 1 inhibitor; 51.9 8 0.00027 21.8 1.8 14 7-20 67-80 (136)
107 1yuz_A Nigerythrin; rubrythrin 51.8 5 0.00017 23.2 0.9 11 9-19 170-180 (202)
108 2zjr_1 50S ribosomal protein L 51.7 9.2 0.00031 18.4 1.7 13 12-24 40-52 (55)
109 2ftc_P Mitochondrial ribosomal 51.2 9 0.00031 18.2 1.7 13 12-24 38-50 (52)
110 2yts_A Zinc finger protein 484 51.2 7.6 0.00026 15.7 1.3 12 8-19 10-21 (46)
111 1ffk_W Ribosomal protein L37AE 51.1 3.3 0.00011 21.2 0.1 16 3-18 20-35 (73)
112 2eoy_A Zinc finger protein 473 51.1 7.7 0.00026 15.8 1.3 11 9-19 11-21 (46)
113 2yto_A Zinc finger protein 484 51.0 7.7 0.00026 15.8 1.3 12 8-19 10-21 (46)
114 3mup_A Baculoviral IAP repeat- 51.0 8 0.00027 21.1 1.6 14 7-20 51-64 (122)
115 3qt1_I DNA-directed RNA polyme 50.9 3.2 0.00011 23.0 0.0 11 10-20 92-102 (133)
116 2eoz_A Zinc finger protein 473 50.8 5.7 0.00019 16.2 0.8 12 8-19 10-21 (46)
117 2ytb_A Zinc finger protein 32; 50.6 5.9 0.0002 15.7 0.8 11 9-19 10-20 (42)
118 2ytp_A Zinc finger protein 484 50.6 7.9 0.00027 15.8 1.3 12 8-19 10-21 (46)
119 2eme_A Zinc finger protein 473 50.5 8 0.00027 15.6 1.3 12 8-19 10-21 (46)
120 2em4_A Zinc finger protein 28 50.4 8 0.00027 15.8 1.3 11 9-19 11-21 (46)
121 2eos_A B-cell lymphoma 6 prote 50.2 6.2 0.00021 15.7 0.9 11 9-19 10-20 (42)
122 2v3b_B Rubredoxin 2, rubredoxi 50.2 7.3 0.00025 18.6 1.2 8 11-18 4-11 (55)
123 2en3_A ZFP-95, zinc finger pro 50.2 8.1 0.00028 15.7 1.3 12 8-19 10-21 (46)
124 2c6a_A Ubiquitin-protein ligas 50.2 6.3 0.00022 18.9 1.0 17 2-18 5-21 (46)
125 2el5_A Zinc finger protein 268 50.1 8.2 0.00028 15.3 1.3 12 8-19 8-19 (42)
126 3m7n_A Putative uncharacterize 50.0 7.2 0.00025 21.9 1.4 14 7-20 153-166 (179)
127 1fv5_A First zinc finger of U- 49.9 8.5 0.00029 16.4 1.3 13 7-19 5-17 (36)
128 2eor_A Zinc finger protein 224 49.8 8.2 0.00028 15.6 1.3 12 8-19 10-21 (46)
129 2i3h_A Baculoviral IAP repeat- 49.7 8.4 0.00029 21.5 1.6 15 6-20 78-92 (133)
130 2em2_A Zinc finger protein 28 49.5 8.4 0.00029 15.7 1.3 12 8-19 10-21 (46)
131 2ep3_A Zinc finger protein 484 49.1 8.6 0.00029 15.6 1.3 12 8-19 10-21 (46)
132 2emi_A Zinc finger protein 484 49.1 8.6 0.00029 15.6 1.3 12 8-19 10-21 (46)
133 2em9_A Zinc finger protein 224 49.1 8.6 0.0003 15.5 1.3 12 8-19 10-21 (46)
134 1wii_A Hypothetical UPF0222 pr 49.0 5.4 0.00019 20.8 0.7 11 9-19 22-32 (85)
135 2ytj_A Zinc finger protein 484 49.0 8.7 0.0003 15.6 1.3 12 8-19 10-21 (46)
136 2enf_A Zinc finger protein 347 48.9 6.7 0.00023 15.9 0.9 12 8-19 10-21 (46)
137 3v2d_6 50S ribosomal protein L 48.7 9.4 0.00032 18.4 1.5 12 13-24 40-51 (54)
138 2ytf_A Zinc finger protein 268 48.7 8.8 0.0003 15.5 1.3 12 8-19 10-21 (46)
139 2eq0_A Zinc finger protein 347 48.7 8.8 0.0003 15.6 1.3 12 8-19 10-21 (46)
140 2epw_A Zinc finger protein 268 48.4 9 0.00031 15.5 1.3 11 9-19 11-21 (46)
141 2emf_A Zinc finger protein 484 48.2 9.1 0.00031 15.6 1.3 12 8-19 10-21 (46)
142 1yk4_A Rubredoxin, RD; electro 48.1 5.9 0.0002 18.8 0.7 8 11-18 3-10 (52)
143 2eon_A ZFP-95, zinc finger pro 48.1 7 0.00024 16.0 0.9 12 8-19 10-21 (46)
144 2emx_A Zinc finger protein 268 48.1 8.9 0.0003 15.4 1.2 12 8-19 8-19 (44)
145 2emy_A Zinc finger protein 268 48.1 9.2 0.00031 15.5 1.3 12 8-19 10-21 (46)
146 2em7_A Zinc finger protein 224 47.9 9.2 0.00031 15.5 1.3 11 9-19 11-21 (46)
147 2ema_A Zinc finger protein 347 47.9 9.2 0.00032 15.5 1.3 12 8-19 10-21 (46)
148 2eoj_A Zinc finger protein 268 47.9 5.8 0.0002 15.9 0.6 11 9-19 11-21 (44)
149 2eof_A Zinc finger protein 268 47.9 9.2 0.00032 15.2 1.3 12 8-19 10-21 (44)
150 1yui_A GAGA-factor; complex (D 47.9 8.9 0.0003 16.3 1.3 11 9-19 23-33 (54)
151 2yte_A Zinc finger protein 473 47.9 7.1 0.00024 15.4 0.9 11 9-19 9-19 (42)
152 3uk3_C Zinc finger protein 217 47.8 8.8 0.0003 16.1 1.2 11 9-19 31-41 (57)
153 3iuf_A Zinc finger protein UBI 47.3 9.3 0.00032 16.1 1.3 11 9-19 6-16 (48)
154 2emp_A Zinc finger protein 347 47.1 9.7 0.00033 15.4 1.3 12 8-19 10-21 (46)
155 2em3_A Zinc finger protein 28 47.1 9.7 0.00033 15.4 1.3 12 8-19 10-21 (46)
156 1i4o_C X-linked IAP, baculovir 46.7 8.8 0.0003 21.5 1.4 14 7-20 75-88 (141)
157 2ct0_A Non-SMC element 1 homol 46.7 11 0.00037 18.8 1.6 12 9-20 27-38 (74)
158 2yu8_A Zinc finger protein 347 46.7 9.9 0.00034 15.4 1.3 12 8-19 10-21 (46)
159 2eq3_A Zinc finger protein 347 46.7 5.9 0.0002 16.1 0.5 12 8-19 10-21 (46)
160 2emm_A ZFP-95, zinc finger pro 46.5 10 0.00034 15.3 1.3 12 8-19 10-21 (46)
161 3r8s_1 50S ribosomal protein L 46.5 9.5 0.00032 18.1 1.3 13 12-24 36-48 (50)
162 2enh_A Zinc finger protein 28 46.5 7.6 0.00026 15.8 0.9 11 9-19 11-21 (46)
163 2emg_A Zinc finger protein 484 46.3 7.7 0.00026 15.7 0.9 11 9-19 11-21 (46)
164 2ytg_A ZFP-95, zinc finger pro 46.3 10 0.00034 15.4 1.3 12 8-19 10-21 (46)
165 2em5_A ZFP-95, zinc finger pro 46.2 10 0.00035 15.4 1.3 12 8-19 10-21 (46)
166 2ene_A Zinc finger protein 347 46.2 10 0.00035 15.3 1.3 12 8-19 10-21 (46)
167 2ytk_A Zinc finger protein 347 46.1 10 0.00035 15.3 1.3 12 8-19 10-21 (46)
168 2eox_A Zinc finger protein 473 46.0 7.5 0.00026 15.6 0.8 11 9-19 11-21 (44)
169 1zfo_A LAsp-1; LIM domain, zin 45.8 7 0.00024 16.3 0.7 12 10-21 3-14 (31)
170 2epu_A Zinc finger protein 32; 45.8 7.6 0.00026 15.7 0.8 12 8-19 10-21 (45)
171 2adr_A ADR1; transcription reg 45.6 10 0.00035 16.1 1.3 11 9-19 29-39 (60)
172 2lo3_A SAGA-associated factor 45.6 6.4 0.00022 18.7 0.6 16 7-22 14-29 (44)
173 2enc_A Zinc finger protein 224 45.5 11 0.00036 15.3 1.3 11 9-19 11-21 (46)
174 1dx8_A Rubredoxin; electron tr 45.5 9.6 0.00033 19.0 1.3 9 10-18 7-15 (70)
175 2qgp_A HNH endonuclease; Q39X4 45.2 6.6 0.00022 20.6 0.7 12 9-20 34-45 (112)
176 3mkr_B Coatomer subunit alpha; 45.1 11 0.00037 23.7 1.7 12 8-19 276-287 (320)
177 2eoh_A Zinc finger protein 28 45.0 7.6 0.00026 15.8 0.8 11 9-19 11-21 (46)
178 3u5c_b RP61, YS20, 40S ribosom 45.0 8.7 0.0003 20.2 1.1 11 9-19 33-43 (82)
179 2em6_A Zinc finger protein 224 44.9 8.4 0.00029 15.7 0.9 12 8-19 10-21 (46)
180 2yti_A Zinc finger protein 347 44.9 6.6 0.00023 16.0 0.5 12 8-19 10-21 (46)
181 2en7_A Zinc finger protein 268 44.9 7.2 0.00025 15.6 0.7 11 9-19 11-21 (44)
182 3jyw_9 60S ribosomal protein L 44.8 2.1 7.2E-05 22.0 -1.3 16 4-19 20-35 (72)
183 2eml_A Zinc finger protein 28 44.8 11 0.00038 15.2 1.3 12 8-19 10-21 (46)
184 2emh_A Zinc finger protein 484 44.7 11 0.00037 15.2 1.3 12 8-19 10-21 (46)
185 2ayj_A 50S ribosomal protein L 44.7 8.2 0.00028 19.1 0.9 14 8-21 31-44 (56)
186 3q87_A Putative uncharacterize 44.4 7.5 0.00025 21.6 0.8 18 10-27 99-116 (125)
187 2en8_A Zinc finger protein 224 44.4 11 0.00038 15.1 1.3 12 8-19 10-21 (46)
188 3j21_i 50S ribosomal protein L 44.4 2.2 7.6E-05 22.5 -1.3 16 4-19 29-44 (83)
189 2yth_A Zinc finger protein 224 44.1 8.7 0.0003 15.6 0.9 11 9-19 11-21 (46)
190 1k81_A EIF-2-beta, probable tr 44.1 5.7 0.0002 17.5 0.3 10 10-19 21-30 (36)
191 1bbo_A Human enhancer-binding 44.1 11 0.00037 15.8 1.2 11 9-19 28-38 (57)
192 2em8_A Zinc finger protein 224 44.0 11 0.00039 15.2 1.3 12 8-19 10-21 (46)
193 2el4_A Zinc finger protein 268 44.0 11 0.00038 15.1 1.2 12 8-19 10-21 (46)
194 3mv2_A Coatomer subunit alpha; 44.0 12 0.00039 23.7 1.7 12 8-19 285-296 (325)
195 2yso_A ZFP-95, zinc finger pro 43.8 12 0.00039 15.1 1.3 12 8-19 10-21 (46)
196 1s24_A Rubredoxin 2; electron 43.8 8.9 0.0003 20.1 1.0 12 7-18 32-43 (87)
197 2k5c_A Uncharacterized protein 43.7 7.6 0.00026 21.0 0.8 10 10-19 51-60 (95)
198 2eoo_A ZFP-95, zinc finger pro 43.7 12 0.0004 15.2 1.3 12 8-19 10-21 (46)
199 2eq1_A Zinc finger protein 347 43.7 8 0.00027 15.7 0.7 11 9-19 11-21 (46)
200 2ytn_A Zinc finger protein 347 43.6 9 0.00031 15.5 0.9 12 8-19 10-21 (46)
201 1vd4_A Transcription initiatio 43.6 11 0.00038 16.7 1.3 10 10-19 39-48 (62)
202 2eov_A Zinc finger protein 484 43.4 9.2 0.00031 15.4 0.9 11 9-19 11-21 (46)
203 2drp_A Protein (tramtrack DNA- 43.3 17 0.00057 15.7 1.8 12 8-19 38-49 (66)
204 2ep2_A Zinc finger protein 484 43.1 12 0.00042 15.1 1.3 12 8-19 10-21 (46)
205 2epx_A Zinc finger protein 28 42.9 9.3 0.00032 15.4 0.9 11 9-19 11-21 (47)
206 2ytd_A Zinc finger protein 473 42.6 12 0.00043 15.0 1.3 11 9-19 11-21 (46)
207 2xzm_6 RPS27E; ribosome, trans 42.4 9.9 0.00034 20.0 1.1 11 9-19 31-41 (81)
208 2en9_A Zinc finger protein 28 42.3 9.7 0.00033 15.5 0.9 11 9-19 11-21 (46)
209 1nc8_A Nucleocapsid protein; H 42.3 12 0.00041 15.3 1.2 12 7-18 3-14 (29)
210 2eod_A TNF receptor-associated 42.3 18 0.00061 15.9 1.9 11 9-19 9-19 (66)
211 2eq2_A Zinc finger protein 347 42.3 8.2 0.00028 15.6 0.6 12 8-19 10-21 (46)
212 3nw0_A Non-structural maintena 42.0 13 0.00043 21.9 1.6 11 10-20 193-203 (238)
213 2ely_A Zinc finger protein 224 41.8 9.9 0.00034 15.4 0.9 11 9-19 11-21 (46)
214 2yrm_A B-cell lymphoma 6 prote 41.7 10 0.00034 15.3 0.9 11 9-19 9-19 (43)
215 4rxn_A Rubredoxin; electron tr 41.7 12 0.00042 17.9 1.3 7 12-18 5-11 (54)
216 2emz_A ZFP-95, zinc finger pro 41.6 9.2 0.00032 15.5 0.8 11 9-19 11-21 (46)
217 2ytq_A Zinc finger protein 268 41.6 10 0.00035 15.4 0.9 11 9-19 11-21 (46)
218 2el6_A Zinc finger protein 268 41.4 13 0.00044 15.0 1.2 11 9-19 11-21 (46)
219 1u6p_A GAG polyprotein; MLV, A 41.0 11 0.00036 18.2 1.0 12 7-18 20-31 (56)
220 2eq4_A Zinc finger protein 224 40.9 9.2 0.00031 15.4 0.7 11 9-19 11-21 (46)
221 2nap_A Protein (periplasmic ni 40.8 29 0.001 22.5 3.3 33 2-34 2-36 (723)
222 2elz_A Zinc finger protein 224 40.6 11 0.00037 15.3 0.9 12 8-19 10-21 (46)
223 2eoq_A Zinc finger protein 224 40.6 9.8 0.00033 15.4 0.8 11 9-19 11-21 (46)
224 1f2i_G Fusion of N-terminal 17 40.5 13 0.00045 16.4 1.3 10 10-19 49-58 (73)
225 3j21_V 50S ribosomal protein L 40.5 8.5 0.00029 19.3 0.6 10 11-20 5-14 (66)
226 1x6m_A GFA, glutathione-depend 40.4 13 0.00044 21.1 1.4 16 11-26 99-114 (196)
227 2ep1_A Zinc finger protein 484 40.4 9.3 0.00032 15.4 0.7 12 8-19 10-21 (46)
228 3iz6_X 40S ribosomal protein S 40.3 11 0.00038 20.0 1.1 10 10-19 36-45 (86)
229 1pqv_S STP-alpha, transcriptio 40.3 12 0.00041 22.8 1.4 14 9-22 267-280 (309)
230 2eom_A ZFP-95, zinc finger pro 40.1 10 0.00034 15.5 0.8 11 9-19 11-21 (46)
231 2eou_A Zinc finger protein 473 39.7 10 0.00035 15.2 0.7 12 8-19 10-21 (44)
232 2ep0_A Zinc finger protein 28 39.6 15 0.00051 14.8 1.3 12 8-19 10-21 (46)
233 3mhs_C SAGA-associated factor 39.5 18 0.00063 19.5 1.9 15 6-20 66-80 (99)
234 2ysp_A Zinc finger protein 224 39.5 11 0.00037 15.2 0.8 12 8-19 10-21 (46)
235 2ytr_A Zinc finger protein 347 39.4 8.9 0.00031 15.5 0.5 11 9-19 11-21 (46)
236 2eop_A Zinc finger protein 268 39.3 12 0.00039 15.1 0.9 12 8-19 10-21 (46)
237 2ytm_A Zinc finger protein 28 39.3 9 0.00031 15.6 0.5 11 9-19 11-21 (46)
238 4avr_A PA4485; unknown functio 39.2 14 0.00046 19.6 1.3 10 12-21 60-69 (95)
239 2apo_B Ribosome biogenesis pro 39.2 9.6 0.00033 18.8 0.7 9 11-19 19-27 (60)
240 2epz_A Zinc finger protein 28 39.1 11 0.00039 15.2 0.9 11 9-19 11-21 (46)
241 1wd2_A Ariadne-1 protein homol 39.0 8.8 0.0003 18.4 0.5 11 10-20 6-16 (60)
242 3iz5_m 60S ribosomal protein L 38.5 3.1 0.00011 22.3 -1.3 16 4-19 30-45 (92)
243 2emk_A Zinc finger protein 28 38.1 12 0.00043 15.1 0.9 12 8-19 10-21 (46)
244 2en6_A Zinc finger protein 268 38.1 12 0.0004 15.1 0.8 12 8-19 10-21 (46)
245 2fiy_A Protein FDHE homolog; F 38.0 8.3 0.00028 23.8 0.4 10 10-19 222-231 (309)
246 1x6e_A Zinc finger protein 24; 38.0 15 0.00053 16.3 1.3 11 9-19 41-51 (72)
247 2xzm_9 RPS31E; ribosome, trans 37.9 11 0.00039 21.9 0.9 14 11-24 114-127 (189)
248 2em0_A Zinc finger protein 224 37.8 11 0.00039 15.2 0.8 11 9-19 11-21 (46)
249 2nn6_I 3'-5' exoribonuclease C 37.7 13 0.00044 21.5 1.2 11 9-19 184-194 (209)
250 3oei_C RELK (toxin RV3358); to 37.7 38 0.0013 17.5 2.9 18 17-34 75-92 (96)
251 4a17_Y RPL37A, 60S ribosomal p 37.6 3.8 0.00013 22.4 -1.0 16 4-19 30-45 (103)
252 2js4_A UPF0434 protein BB2007; 37.4 28 0.00095 17.3 2.3 17 7-23 5-21 (70)
253 2fnf_X Putative RAS effector N 37.3 20 0.00068 17.5 1.7 14 7-20 46-59 (72)
254 3u5c_a 40S ribosomal protein S 37.2 17 0.00059 20.2 1.6 13 8-20 18-30 (119)
255 3k1f_M Transcription initiatio 37.2 20 0.00069 21.5 2.0 14 9-22 20-36 (197)
256 2en1_A Zinc finger protein 224 37.1 12 0.00043 15.0 0.8 12 8-19 10-21 (46)
257 2kpi_A Uncharacterized protein 37.1 32 0.0011 16.2 2.4 19 5-23 5-23 (56)
258 1nkw_1 50S ribosomal protein L 37.0 19 0.00065 18.8 1.7 13 12-24 67-79 (82)
259 3u6p_A Formamidopyrimidine-DNA 36.8 28 0.00097 20.8 2.6 22 10-31 245-266 (273)
260 1a6b_B Momulv, zinc finger pro 36.7 14 0.00049 16.6 1.0 12 7-18 7-18 (40)
261 3izc_m 60S ribosomal protein R 36.5 3.3 0.00011 22.2 -1.4 16 4-19 30-45 (92)
262 2jr6_A UPF0434 protein NMA0874 36.3 23 0.00079 17.5 1.9 17 7-23 5-21 (68)
263 3izc_Z 60S ribosomal protein R 36.2 14 0.00047 21.4 1.1 10 11-20 4-13 (155)
264 1vq8_U 50S ribosomal protein L 36.0 11 0.00037 18.9 0.6 10 11-20 4-13 (66)
265 1i7d_A DNA topoisomerase III; 35.9 8.5 0.00029 25.9 0.2 17 10-26 616-632 (659)
266 1ptq_A Protein kinase C delta 35.9 21 0.00072 15.6 1.6 12 8-19 26-37 (50)
267 3irb_A Uncharacterized protein 35.9 13 0.00044 20.3 0.9 13 10-22 47-59 (145)
268 4a17_T RPL24, 60S ribosomal pr 35.8 14 0.00047 21.4 1.1 10 11-20 6-15 (158)
269 2eoe_A Zinc finger protein 347 35.6 11 0.00038 15.1 0.5 12 8-19 10-21 (46)
270 2epr_A POZ-, at HOOK-, and zin 35.3 26 0.00091 14.2 1.8 13 7-19 9-21 (48)
271 2d9h_A Zinc finger protein 692 35.2 18 0.00061 16.2 1.3 11 9-19 37-47 (78)
272 2ct1_A Transcriptional repress 35.1 17 0.0006 16.2 1.2 11 9-19 44-54 (77)
273 2rsd_A E3 SUMO-protein ligase 35.1 21 0.00073 17.0 1.6 17 2-19 2-18 (68)
274 1rfh_A RAS association (ralgds 34.7 24 0.00081 16.5 1.7 13 7-19 33-45 (59)
275 2ytt_A Zinc finger protein 473 34.5 12 0.00041 15.1 0.5 12 8-19 10-21 (46)
276 4bbr_M Transcription initiatio 34.2 17 0.00059 22.3 1.4 14 10-23 21-37 (345)
277 3j21_d 50S ribosomal protein L 34.2 17 0.00059 19.1 1.2 15 6-20 29-43 (89)
278 2xzf_A Formamidopyrimidine-DNA 34.2 33 0.0011 20.3 2.6 22 11-32 243-264 (271)
279 3eqt_A ATP-dependent RNA helic 34.1 7.4 0.00025 22.1 -0.2 14 6-19 65-78 (145)
280 3lpe_B DNA-directed RNA polyme 34.0 13 0.00045 18.1 0.7 7 12-18 15-21 (59)
281 1x5w_A Zinc finger protein 64, 34.0 27 0.00091 15.3 1.8 10 10-19 9-18 (70)
282 1ee8_A MUTM (FPG) protein; bet 34.0 35 0.0012 20.3 2.7 22 11-32 236-257 (266)
283 1nui_A DNA primase/helicase; z 33.9 13 0.00045 21.2 0.8 9 10-18 14-22 (255)
284 1k3x_A Endonuclease VIII; hydr 33.9 34 0.0012 20.2 2.6 22 11-32 235-256 (262)
285 1k82_A Formamidopyrimidine-DNA 33.8 34 0.0012 20.3 2.6 22 11-32 241-262 (268)
286 3iz5_i 60S ribosomal protein L 33.6 14 0.00047 20.5 0.8 15 6-20 37-51 (119)
287 4esj_A Type-2 restriction enzy 33.6 8.8 0.0003 23.9 -0.0 14 10-23 34-47 (257)
288 3u5e_g 60S ribosomal protein L 33.3 18 0.0006 20.1 1.2 15 6-20 37-51 (121)
289 2djr_A Zinc finger BED domain- 33.1 15 0.00051 18.6 0.8 12 9-20 27-38 (76)
290 2gvi_A Conserved hypothetical 33.1 30 0.001 19.8 2.2 15 7-21 169-183 (204)
291 1kbe_A Kinase suppressor of RA 33.0 15 0.00051 17.1 0.8 11 10-20 27-37 (49)
292 3iz5_Z 60S ribosomal protein L 32.9 17 0.00057 21.2 1.1 11 10-20 5-15 (162)
293 2eps_A POZ-, at HOOK-, and zin 32.6 22 0.00074 15.0 1.3 12 8-19 10-21 (54)
294 2ab3_A ZNF29; zinc finger prot 31.6 19 0.00067 12.5 0.9 10 10-19 2-13 (29)
295 2gnr_A Conserved hypothetical 31.5 17 0.00057 20.0 0.9 13 9-21 46-58 (145)
296 2odd_A Protein CBFA2T1; MYND z 31.0 14 0.00047 17.3 0.5 8 12-19 19-26 (64)
297 2lce_A B-cell lymphoma 6 prote 31.0 23 0.00079 15.7 1.3 10 10-19 45-54 (74)
298 4gzn_C ZFP-57, zinc finger pro 31.0 23 0.00078 16.2 1.3 10 10-19 4-13 (60)
299 2kwq_A Protein MCM10 homolog; 31.0 21 0.00073 18.8 1.3 16 4-19 59-74 (92)
300 4ayb_N DNA-directed RNA polyme 31.0 16 0.00055 18.5 0.7 11 10-20 4-14 (66)
301 2epp_A POZ-, at HOOK-, and zin 30.8 24 0.00083 16.7 1.4 14 6-19 9-22 (66)
302 3k7a_M Transcription initiatio 30.8 20 0.00067 21.8 1.2 10 9-18 20-29 (345)
303 2kmk_A Zinc finger protein GFI 30.7 23 0.00078 15.6 1.2 11 9-19 56-66 (82)
304 2enz_A NPKC-theta, protein kin 30.7 29 0.00099 16.2 1.6 12 8-19 38-49 (65)
305 1x6h_A Transcriptional repress 30.6 24 0.00082 15.7 1.3 11 9-19 46-56 (86)
306 1faq_A RAF-1; transferase, ser 30.3 21 0.00072 15.8 1.0 11 9-19 26-36 (52)
307 2ecw_A Tripartite motif-contai 30.3 22 0.00074 16.3 1.1 13 8-20 57-69 (85)
308 2jsp_A Transcriptional regulat 30.1 23 0.00079 18.6 1.3 12 8-19 19-30 (87)
309 2xzm_5 Ribosomal protein S26E 30.1 27 0.00091 19.5 1.6 13 8-20 18-30 (119)
310 3hxi_C Eukaryotic translation 30.0 22 0.00074 14.5 0.9 7 17-23 3-9 (21)
311 4a18_C 60S ribosomal protein L 29.8 27 0.00091 19.1 1.6 14 10-23 69-82 (109)
312 1yc5_A NAD-dependent deacetyla 29.8 27 0.00092 20.2 1.7 11 9-19 144-154 (246)
313 2cot_A Zinc finger protein 435 29.6 25 0.00087 15.7 1.3 11 9-19 45-55 (77)
314 1vq8_1 50S ribosomal protein L 29.5 24 0.00083 17.4 1.2 13 8-20 15-27 (57)
315 1m2k_A Silent information regu 29.4 27 0.00093 20.3 1.6 11 10-20 142-152 (249)
316 1ryq_A DNA-directed RNA polyme 29.3 16 0.00056 18.5 0.6 11 9-19 22-32 (69)
317 2jny_A Uncharacterized BCR; st 29.2 34 0.0012 16.9 1.8 17 7-23 7-23 (67)
318 1sp2_A SP1F2; zinc finger, tra 29.2 22 0.00077 12.8 0.9 10 10-19 2-13 (31)
319 2yuc_A TNF receptor-associated 29.1 17 0.0006 17.0 0.7 14 8-21 14-28 (76)
320 3p8b_A DNA-directed RNA polyme 29.0 18 0.00061 18.9 0.7 8 12-19 37-44 (81)
321 2ysl_A Tripartite motif-contai 29.0 21 0.00073 16.2 0.9 12 9-20 56-67 (73)
322 3f2g_A Alkylmercury lyase; MER 28.9 77 0.0026 18.8 3.6 21 11-31 115-135 (220)
323 2e7z_A Acetylene hydratase AHY 28.9 69 0.0024 20.8 3.6 24 11-34 4-30 (727)
324 3f6q_B LIM and senescent cell 28.7 28 0.00096 15.6 1.3 16 6-21 7-22 (72)
325 1a1h_A QGSR zinc finger peptid 28.1 28 0.00094 15.7 1.3 11 9-19 61-71 (90)
326 3d00_A Tungsten formylmethanof 28.1 41 0.0014 19.2 2.2 15 7-21 160-174 (191)
327 2zet_C Melanophilin; complex, 27.9 33 0.0011 19.2 1.7 14 7-20 82-95 (153)
328 2zkr_u 60S ribosomal protein L 27.9 17 0.00059 20.9 0.6 10 11-20 4-13 (157)
329 2ctu_A Zinc finger protein 483 27.5 29 0.00098 14.9 1.2 13 8-20 16-28 (73)
330 2dlk_A Novel protein; ZF-C2H2 27.4 20 0.00068 15.9 0.7 8 11-18 69-76 (79)
331 2hl7_A Cytochrome C-type bioge 27.4 22 0.00076 18.3 0.9 11 9-19 25-35 (84)
332 2co8_A NEDD9 interacting prote 27.3 27 0.00091 16.7 1.2 16 6-21 11-26 (82)
333 3hcs_A TNF receptor-associated 27.3 23 0.00078 18.9 1.0 13 10-22 137-149 (170)
334 1g47_A Pinch protein; LIM doma 27.3 31 0.0011 15.8 1.4 16 6-21 7-22 (77)
335 2jrp_A Putative cytoplasmic pr 27.2 18 0.00062 18.7 0.6 9 12-20 33-41 (81)
336 1q1a_A HST2 protein; ternary c 27.2 23 0.0008 21.0 1.1 11 9-19 162-172 (289)
337 3cc2_Z 50S ribosomal protein L 27.0 16 0.00055 20.2 0.3 16 4-19 54-69 (116)
338 2dmd_A Zinc finger protein 64, 26.9 29 0.00099 15.8 1.2 11 9-19 63-73 (96)
339 2yrc_A Protein transport prote 26.8 26 0.0009 16.8 1.1 12 7-18 6-19 (59)
340 3j21_j 50S ribosomal protein L 26.7 21 0.00073 19.0 0.8 16 8-23 66-81 (94)
341 1g25_A CDK-activating kinase a 26.7 20 0.00069 16.1 0.6 11 10-20 43-53 (65)
342 1zbd_B Rabphilin-3A; G protein 26.7 36 0.0012 18.6 1.7 13 8-20 70-82 (134)
343 2yt9_A Zinc finger-containing 26.7 41 0.0014 15.3 1.8 10 10-19 7-16 (95)
344 2egp_A Tripartite motif-contai 26.3 28 0.00095 15.9 1.1 13 8-20 51-63 (79)
345 2iv2_X Formate dehydrogenase H 26.3 80 0.0027 20.5 3.5 24 11-34 6-31 (715)
346 2ghf_A ZHX1, zinc fingers and 26.2 38 0.0013 17.1 1.7 10 10-19 18-27 (102)
347 2zkr_2 60S ribosomal protein L 26.1 20 0.00069 19.3 0.6 16 8-23 14-29 (97)
348 2pk7_A Uncharacterized protein 26.1 23 0.00078 17.5 0.8 14 9-22 7-20 (69)
349 2ctd_A Zinc finger protein 512 26.0 32 0.0011 16.7 1.4 11 9-19 33-43 (96)
350 4b6d_A RAC GTPase-activating p 26.0 36 0.0012 16.2 1.5 12 9-20 18-29 (61)
351 2owo_A DNA ligase; protein-DNA 25.9 26 0.0009 23.8 1.3 14 8-21 403-416 (671)
352 2iyb_E Testin, TESS, TES; LIM 25.8 36 0.0012 15.4 1.5 11 11-21 3-13 (65)
353 2ecv_A Tripartite motif-contai 25.8 22 0.00076 16.3 0.7 13 9-21 58-70 (85)
354 1x0t_A Ribonuclease P protein 25.7 25 0.00084 18.8 0.9 15 9-23 93-107 (120)
355 2dj7_A Actin-binding LIM prote 25.7 33 0.0011 16.4 1.3 17 5-21 10-26 (80)
356 2hf1_A Tetraacyldisaccharide-1 25.7 23 0.0008 17.5 0.8 14 9-22 7-20 (68)
357 2yre_A F-box only protein 30; 25.6 40 0.0014 18.0 1.8 12 9-20 36-48 (100)
358 3t6p_A Baculoviral IAP repeat- 25.5 34 0.0011 21.2 1.6 15 6-20 36-50 (345)
359 2dlq_A GLI-kruppel family memb 25.3 33 0.0011 16.3 1.3 10 10-19 94-103 (124)
360 1llm_C Chimera of ZIF23-GCN4; 25.3 33 0.0011 15.7 1.3 10 10-19 3-12 (88)
361 3mqg_A Lipopolysaccharides bio 25.3 56 0.0019 17.3 2.4 19 5-23 167-185 (192)
362 2enn_A NPKC-theta, protein kin 25.2 44 0.0015 16.2 1.8 13 8-20 49-61 (77)
363 1vzi_A Desulfoferrodoxin; ferr 25.1 37 0.0013 18.3 1.6 16 6-21 3-18 (126)
364 2kw0_A CCMH protein; oxidoredu 24.5 24 0.0008 18.6 0.7 11 9-19 22-32 (90)
365 2ebt_A Krueppel-like factor 5; 24.3 28 0.00096 16.0 0.9 11 9-19 74-84 (100)
366 2k2d_A Ring finger and CHY zin 24.0 24 0.00083 17.8 0.7 7 12-18 57-63 (79)
367 3uej_A NPKC-delta, protein kin 23.9 43 0.0015 15.5 1.6 11 9-19 36-46 (65)
368 1vq8_3 50S ribosomal protein L 23.9 29 0.00099 18.5 1.0 13 10-22 68-80 (92)
369 1y8f_A UNC-13 homolog A, MUNC1 23.7 33 0.0011 16.1 1.1 11 9-19 40-50 (66)
370 3bbo_3 Ribosomal protein L33; 23.6 15 0.0005 18.4 -0.2 13 12-24 51-63 (66)
371 3j21_e 50S ribosomal protein L 23.5 29 0.00099 17.4 0.9 12 9-20 16-27 (62)
372 2yuu_A NPKC-delta, protein kin 23.5 45 0.0015 16.3 1.6 13 8-20 43-55 (83)
373 3p2a_A Thioredoxin 2, putative 23.3 30 0.001 17.3 1.0 10 10-19 5-14 (148)
374 2csh_A Zinc finger protein 297 23.2 38 0.0013 15.9 1.3 11 9-19 64-74 (110)
375 2vpz_A Thiosulfate reductase; 23.1 1.1E+02 0.0037 20.1 3.8 24 11-34 42-67 (765)
376 2gqj_A Zinc finger protein KIA 23.1 27 0.00093 16.6 0.7 11 9-19 23-33 (98)
377 2eli_A Protein kinase C alpha 23.1 48 0.0017 16.3 1.7 13 8-20 43-55 (85)
378 3mhs_E SAGA-associated factor 22.9 17 0.00058 19.6 -0.1 12 11-22 76-87 (96)
379 2ct2_A Tripartite motif protei 22.9 32 0.0011 16.0 1.0 12 9-20 55-66 (88)
380 3ml1_A NAPA, periplasmic nitra 22.7 1E+02 0.0035 20.7 3.6 24 11-34 17-42 (802)
381 1x4s_A Protein FON, zinc finge 22.7 34 0.0012 16.8 1.0 11 9-19 25-35 (59)
382 2ee8_A Protein ODD-skipped-rel 22.4 44 0.0015 15.5 1.4 12 8-19 15-26 (106)
383 2vy4_A U11/U12 small nuclear r 22.4 51 0.0018 14.3 1.5 14 8-21 3-17 (37)
384 1q14_A HST2 protein; histone d 22.4 32 0.0011 21.5 1.1 10 10-19 171-180 (361)
385 4g9i_A Hydrogenase maturation 22.4 38 0.0013 23.2 1.5 15 9-23 177-191 (772)
386 3flo_B DNA polymerase alpha ca 22.3 51 0.0018 19.3 1.9 14 10-23 22-35 (206)
387 2lv2_A Insulinoma-associated p 22.2 39 0.0013 16.5 1.2 10 10-19 56-65 (85)
388 2w0t_A Lethal(3)malignant brai 22.0 46 0.0016 15.4 1.4 11 8-18 4-14 (43)
389 1ti6_A Pyrogallol hydroxytrans 21.9 1E+02 0.0034 20.7 3.4 25 10-34 6-30 (875)
390 1zfd_A SWI5; DNA binding motif 21.6 37 0.0013 12.2 0.9 10 10-19 3-14 (32)
391 1ma3_A SIR2-AF2, transcription 21.5 32 0.0011 20.0 0.9 10 9-18 146-155 (253)
392 2d8x_A Protein pinch; LIM doma 21.5 38 0.0013 15.3 1.0 14 8-21 3-16 (70)
393 1x6f_A Zinc finger protein 462 21.4 43 0.0015 16.2 1.3 12 8-19 23-34 (88)
394 2ecy_A TNF receptor-associated 21.4 32 0.0011 15.4 0.8 11 10-20 50-60 (66)
395 3ttc_A HYPF, transcriptional r 21.3 41 0.0014 22.8 1.5 14 9-22 88-102 (657)
396 1pg5_B Aspartate carbamoyltran 21.3 52 0.0018 19.2 1.8 13 8-20 141-153 (168)
397 1jm7_A BRCA1, breast cancer ty 21.3 28 0.00097 17.0 0.6 11 10-20 58-68 (112)
398 1j8f_A SIRT2, sirtuin 2, isofo 21.3 35 0.0012 20.8 1.1 11 9-19 184-194 (323)
399 2ppt_A Thioredoxin-2; thiredox 21.1 35 0.0012 17.7 1.0 10 10-19 14-23 (155)
400 3efo_B SEC24 related gene fami 20.9 39 0.0013 23.0 1.3 13 7-19 95-107 (770)
401 3i9v_3 NADH-quinone oxidoreduc 20.8 1.1E+02 0.0037 20.5 3.5 25 10-34 253-279 (783)
402 1x4l_A Skeletal muscle LIM-pro 20.6 34 0.0012 15.6 0.8 13 9-21 4-16 (72)
403 2wbt_A B-129; zinc finger; 2.7 20.5 45 0.0015 16.2 1.3 10 10-19 74-83 (129)
404 2k1p_A Zinc finger RAN-binding 20.3 35 0.0012 14.4 0.7 9 11-19 7-15 (33)
405 3noy_A 4-hydroxy-3-methylbut-2 20.1 35 0.0012 22.0 0.9 11 8-18 269-279 (366)
No 1
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.80 E-value=8.8e-21 Score=98.48 Aligned_cols=35 Identities=57% Similarity=1.103 Sum_probs=33.2
Q ss_pred CccccCCCCceecCCCCCeEEEeecCCceEEEEeC
Q 035423 1 MENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35 (35)
Q Consensus 1 ~~~~lk~~~~irC~~CG~RIlyK~R~~~~~~~~Ar 35 (35)
.+++|+.+++||||+||||||||+||++++||+||
T Consensus 29 ~~~~l~~~~~iRC~~CG~RILyK~Rt~r~~~~~Ar 63 (63)
T 3h0g_L 29 ARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63 (63)
T ss_dssp CBCCCCSSSCCCCSSSCCCCCBCCCCCCCEEECCC
T ss_pred CeeecCCCCceECCCCCcEEEEEecCCceEEEECC
Confidence 36889999999999999999999999999999998
No 2
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=99.73 E-value=3.9e-19 Score=93.22 Aligned_cols=34 Identities=50% Similarity=0.968 Sum_probs=32.3
Q ss_pred ccccCCCCceecCCCCCeEEEeecCCceEEEEeC
Q 035423 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 35 (35)
Q Consensus 2 ~~~lk~~~~irC~~CG~RIlyK~R~~~~~~~~Ar 35 (35)
+++++..|+|+||+||||||||+||++++||+||
T Consensus 37 ~~e~~~~d~irCp~CG~RILyK~R~~r~v~~~ar 70 (70)
T 1twf_L 37 KLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70 (70)
T ss_dssp EECCCTTSTTCCSSSCCCCCBCCCCSSCEEECCC
T ss_pred cceeCCCCCccCCCCCceEeEecCCCccEEEecC
Confidence 5778899999999999999999999999999998
No 3
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=99.49 E-value=1.4e-14 Score=72.24 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=31.0
Q ss_pred ccccCCCCceecCCCCCeEEEeecCCceEEEEe
Q 035423 2 ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 34 (35)
Q Consensus 2 ~~~lk~~~~irC~~CG~RIlyK~R~~~~~~~~A 34 (35)
+.+|+..+.|+||+|||||+||.|++.++.++|
T Consensus 15 ~~el~~lP~IrCpyCGyrii~KvR~p~vK~vkA 47 (48)
T 4ayb_P 15 DEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKA 47 (48)
T ss_dssp CCCSCCCSSSCCTTTCCSCEECCCCCSCEEEEC
T ss_pred HHHHhhCCCcccCccCcEEEEEecCCcceeeec
Confidence 467899999999999999999999999999988
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.99 E-value=0.0034 Score=37.23 Aligned_cols=19 Identities=53% Similarity=1.125 Sum_probs=14.9
Q ss_pred CCCceecCCCCCeEEEeecC
Q 035423 7 PGDVIQCRECGYRILYKKRT 26 (35)
Q Consensus 7 ~~~~irC~~CG~RIlyK~R~ 26 (35)
..+.+.||+|| ||||....
T Consensus 219 ~~~Iv~Cp~Cg-RIL~~~~~ 237 (256)
T 3na7_A 219 SGDMITCPYCG-RILYAEGA 237 (256)
T ss_dssp SSSCEECTTTC-CEEECSCC
T ss_pred CCCEEECCCCC-eeEEeCcc
Confidence 34679999998 89997644
No 5
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.047 Score=28.59 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=12.9
Q ss_pred cCCCCceecCCCCCe
Q 035423 5 LKPGDVIQCRECGYR 19 (35)
Q Consensus 5 lk~~~~irC~~CG~R 19 (35)
|..+.+-||++||+-
T Consensus 51 l~~g~~~RC~eCG~~ 65 (80)
T 2odx_A 51 PTVNEVARCWECGSV 65 (80)
T ss_dssp CCTTCEEECSSSCCE
T ss_pred ecCCCCeECCCCCeE
Confidence 677888999999994
No 6
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=92.91 E-value=0.055 Score=29.24 Aligned_cols=17 Identities=41% Similarity=0.962 Sum_probs=13.4
Q ss_pred cCCCCceecCCCCCeEEEe
Q 035423 5 LKPGDVIQCRECGYRILYK 23 (35)
Q Consensus 5 lk~~~~irC~~CG~RIlyK 23 (35)
|..+.+-||++||+ .||
T Consensus 74 l~~g~~~RC~eCG~--~fk 90 (98)
T 1v54_F 74 LHKGEAQRCPSCGT--HYK 90 (98)
T ss_dssp EESSSCEECTTTCC--EEE
T ss_pred EeCCCceECCCCCe--EEE
Confidence 56677899999998 454
No 7
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=91.84 E-value=0.077 Score=29.34 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=12.3
Q ss_pred CceecCCCCCeEEEeec
Q 035423 9 DVIQCRECGYRILYKKR 25 (35)
Q Consensus 9 ~~irC~~CG~RIlyK~R 25 (35)
+...||.||+.+-.+.|
T Consensus 147 ~~~~Cp~CG~~~~~~~~ 163 (165)
T 2lcq_A 147 PGGVCPDCGSKVKLIPR 163 (165)
T ss_dssp GGGBCTTTCCBEEECCC
T ss_pred CCCcCCCCCCcceeCCc
Confidence 34699999999654444
No 8
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=91.72 E-value=0.11 Score=27.56 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.8
Q ss_pred CCCceecCCCCCeEEEe
Q 035423 7 PGDVIQCRECGYRILYK 23 (35)
Q Consensus 7 ~~~~irC~~CG~RIlyK 23 (35)
....+.|||||-+-.+|
T Consensus 50 ~~g~~~CpYCg~~f~l~ 66 (80)
T 2jvm_A 50 ETGFVECGYCDRRYIHE 66 (80)
T ss_dssp TTCEEECSSSSCEEEEH
T ss_pred CCCeEECCCCCCEEEec
Confidence 46789999999986655
No 9
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.13 E-value=0.11 Score=29.37 Aligned_cols=15 Identities=33% Similarity=0.902 Sum_probs=12.3
Q ss_pred cCCCCceecCCCCCe
Q 035423 5 LKPGDVIQCRECGYR 19 (35)
Q Consensus 5 lk~~~~irC~~CG~R 19 (35)
|..+.+-||++||+-
T Consensus 105 L~kg~p~RCpeCG~~ 119 (129)
T 2y69_F 105 LHKGEAQRCPSCGTH 119 (129)
T ss_dssp EESSSCEECTTTCCE
T ss_pred EeCCCceeCCCCCeE
Confidence 566778999999983
No 10
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=90.58 E-value=0.13 Score=26.31 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=13.6
Q ss_pred CCCceecCCCCCeEEEe
Q 035423 7 PGDVIQCRECGYRILYK 23 (35)
Q Consensus 7 ~~~~irC~~CG~RIlyK 23 (35)
....+.|||||-+-.+|
T Consensus 37 ~~g~~~CpYCg~~f~l~ 53 (67)
T 2jrr_A 37 DTGWVECPYCDCKYVLK 53 (67)
T ss_dssp TTSEEEETTTTEEEEET
T ss_pred CCCeEECCCCCCEEEEC
Confidence 45789999999886655
No 11
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=90.53 E-value=0.13 Score=27.64 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=15.4
Q ss_pred cCCCCceecCCCCCeEEEee
Q 035423 5 LKPGDVIQCRECGYRILYKK 24 (35)
Q Consensus 5 lk~~~~irC~~CG~RIlyK~ 24 (35)
|.....+.|||||-+-.++.
T Consensus 43 i~~~g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 43 MGSTDEKICPYCSTLYRYDP 62 (87)
T ss_dssp CTTCCEECCTTTCCEEECCT
T ss_pred cCCCCeEECCCCCCEeEcCC
Confidence 45567899999999866553
No 12
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=88.48 E-value=0.29 Score=22.55 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=14.3
Q ss_pred ccCCCCceecCCCCCeEEEe
Q 035423 4 TLKPGDVIQCRECGYRILYK 23 (35)
Q Consensus 4 ~lk~~~~irC~~CG~RIlyK 23 (35)
.+...+...|+.||-.|--+
T Consensus 3 ~~~~~~~~~C~~C~~~i~~~ 22 (39)
T 2i5o_A 3 HMAAEDQVPCEKCGSLVPVW 22 (39)
T ss_dssp ---CCCEEECTTTCCEEEGG
T ss_pred CCCcCCCcccccccCcCCcc
Confidence 46778899999999987643
No 13
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=87.04 E-value=0.35 Score=26.50 Aligned_cols=19 Identities=26% Similarity=0.718 Sum_probs=14.9
Q ss_pred CCCCceecCCCCCeEEEee
Q 035423 6 KPGDVIQCRECGYRILYKK 24 (35)
Q Consensus 6 k~~~~irC~~CG~RIlyK~ 24 (35)
+....++|+.|+.+||-+.
T Consensus 8 ~N~~~i~C~~C~s~il~~~ 26 (115)
T 1hxr_A 8 RNRKAVLCQRCGSRVLQPG 26 (115)
T ss_dssp BBSSCEEETTTCCEEECTT
T ss_pred cccCeEECCCCCCEEeccC
Confidence 3456899999999998543
No 14
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=86.48 E-value=0.31 Score=23.11 Aligned_cols=13 Identities=38% Similarity=0.935 Sum_probs=10.9
Q ss_pred ceecCCCCCeEEE
Q 035423 10 VIQCRECGYRILY 22 (35)
Q Consensus 10 ~irC~~CG~RIly 22 (35)
.+.||.||++-++
T Consensus 15 ~~~Cp~Cg~~~~~ 27 (57)
T 1qyp_A 15 KITCPKCGNDTAY 27 (57)
T ss_dssp ECCCTTTCCSEEE
T ss_pred EeECCCCCCCEEE
Confidence 5789999998765
No 15
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=84.34 E-value=0.27 Score=25.15 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=13.1
Q ss_pred CceecCCCCCeEEEeecCC
Q 035423 9 DVIQCRECGYRILYKKRTR 27 (35)
Q Consensus 9 ~~irC~~CG~RIlyK~R~~ 27 (35)
....|| ||.+|=+++++-
T Consensus 20 kT~~C~-CG~~~~~~k~ri 37 (71)
T 1gh9_A 20 KTRKCV-CGRTVNVKDRRI 37 (71)
T ss_dssp SEEEET-TTEEEECCSSSC
T ss_pred cEEECC-CCCeeeeceEEE
Confidence 456788 888887777653
No 16
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=82.81 E-value=0.45 Score=22.62 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=10.4
Q ss_pred CCceecCCCCCeEE
Q 035423 8 GDVIQCRECGYRIL 21 (35)
Q Consensus 8 ~~~irC~~CG~RIl 21 (35)
...+.||.||++=.
T Consensus 7 t~~~~Cp~Cg~~~a 20 (50)
T 1tfi_A 7 TDLFTCGKCKKKNC 20 (50)
T ss_dssp CCCSCCSSSCSSCE
T ss_pred eCccCCCCCCCCEE
Confidence 45678999998643
No 17
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=79.67 E-value=1.3 Score=20.26 Aligned_cols=15 Identities=20% Similarity=0.665 Sum_probs=10.6
Q ss_pred eecCCCCC-eEEEeec
Q 035423 11 IQCRECGY-RILYKKR 25 (35)
Q Consensus 11 irC~~CG~-RIlyK~R 25 (35)
..||.||. .+.|-..
T Consensus 6 ~~CP~C~~~~l~~d~~ 21 (50)
T 1pft_A 6 KVCPACESAELIYDPE 21 (50)
T ss_dssp CSCTTTSCCCEEEETT
T ss_pred EeCcCCCCcceEEcCC
Confidence 46888888 7777543
No 18
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=78.00 E-value=1.1 Score=16.39 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=8.2
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 1rik_A 2 KFACPECPKR 11 (29)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCCCch
Confidence 4689999976
No 19
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=77.27 E-value=0.58 Score=24.39 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=14.7
Q ss_pred ccCCCCceecCCCCCeEEEee
Q 035423 4 TLKPGDVIQCRECGYRILYKK 24 (35)
Q Consensus 4 ~lk~~~~irC~~CG~RIlyK~ 24 (35)
+++......||.||...++..
T Consensus 21 e~~q~~~y~Cp~CG~~~v~r~ 41 (83)
T 1vq8_Z 21 ESEMNEDHACPNCGEDRVDRQ 41 (83)
T ss_dssp HHHHHSCEECSSSCCEEEEEE
T ss_pred HHhccccCcCCCCCCcceecc
Confidence 344455678999998776654
No 20
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=76.85 E-value=1.2 Score=16.22 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=8.5
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvh_A 3 PFSCSLCPQR 12 (27)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCcChh
Confidence 5789999986
No 21
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=76.41 E-value=1.2 Score=21.49 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=10.3
Q ss_pred CceecCCCCC-eEEEe
Q 035423 9 DVIQCRECGY-RILYK 23 (35)
Q Consensus 9 ~~irC~~CG~-RIlyK 23 (35)
....||+||. .|.|-
T Consensus 10 ~~~~Cp~C~~~~lv~D 25 (58)
T 1dl6_A 10 PRVTCPNHPDAILVED 25 (58)
T ss_dssp SCCSBTTBSSSCCEEC
T ss_pred ccccCcCCCCCceeEe
Confidence 3448999987 66653
No 22
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.85 E-value=1.3 Score=23.67 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=8.6
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
.+.||.||++
T Consensus 72 ~~~Cp~C~~~ 81 (113)
T 3h0g_I 72 DKECPRCHQH 81 (113)
T ss_dssp CSCCSSSCCS
T ss_pred ccCCCCCCCc
Confidence 3889999997
No 23
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=73.93 E-value=1.7 Score=15.80 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=8.4
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 3 ~~~C~~C~k~ 12 (28)
T 2kvf_A 3 PYSCSVCGKR 12 (28)
T ss_dssp SEECSSSCCE
T ss_pred CccCCCCCcc
Confidence 5789999986
No 24
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.08 E-value=2.7 Score=19.86 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=8.4
Q ss_pred ecCCCCCeEEEee
Q 035423 12 QCRECGYRILYKK 24 (35)
Q Consensus 12 rC~~CG~RIlyK~ 24 (35)
-||.||.-+++..
T Consensus 21 ~CP~CG~~~fm~~ 33 (50)
T 3j20_Y 21 FCPRCGPGVFMAD 33 (50)
T ss_dssp ECSSSCSSCEEEE
T ss_pred cCCCCCCceEEec
Confidence 4778877665543
No 25
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=73.03 E-value=1.6 Score=15.78 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=8.4
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|..||..
T Consensus 3 ~~~C~~C~~~ 12 (30)
T 2m0d_A 3 PYQCDYCGRS 12 (30)
T ss_dssp CEECTTTCCE
T ss_pred CccCCCCCcc
Confidence 5789999975
No 26
>2gag_D Heterotetrameric sarcosine oxidase delta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_D* 1x31_D* 1vrq_D* 3ad7_D* 3ad8_D* 3ad9_D* 3ada_D*
Probab=72.31 E-value=0.89 Score=24.72 Aligned_cols=10 Identities=50% Similarity=1.262 Sum_probs=8.3
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
.|-||+||-|
T Consensus 3 ~I~CP~CG~R 12 (99)
T 2gag_D 3 LIDCPNCGPR 12 (99)
T ss_dssp EEEETTTEEE
T ss_pred EecCCCCCCc
Confidence 5899999965
No 27
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=71.92 E-value=1.4 Score=16.23 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=8.3
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvg_A 3 PYRCPLCRAG 12 (27)
T ss_dssp TEEETTTTEE
T ss_pred CcCCCCCCcc
Confidence 5789999976
No 28
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=71.72 E-value=1.4 Score=15.89 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=7.8
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 2m0e_A 2 EHKCPHCDKK 11 (29)
T ss_dssp CCCCSSCCCC
T ss_pred CCcCCCCCcc
Confidence 4579999975
No 29
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=71.47 E-value=1.8 Score=22.38 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=9.2
Q ss_pred eecCCCCCeEEE
Q 035423 11 IQCRECGYRILY 22 (35)
Q Consensus 11 irC~~CG~RIly 22 (35)
.+||.||.-.+.
T Consensus 3 M~Cp~Cg~~~~~ 14 (133)
T 3o9x_A 3 MKCPVCHQGEMV 14 (133)
T ss_dssp CBCTTTSSSBEE
T ss_pred cCCCcCCCCcee
Confidence 589999987553
No 30
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=73.28 E-value=0.88 Score=16.52 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=8.8
Q ss_pred ceecCCCCCeEE
Q 035423 10 VIQCRECGYRIL 21 (35)
Q Consensus 10 ~irC~~CG~RIl 21 (35)
+..|+.||...-
T Consensus 2 p~~C~~C~k~f~ 13 (26)
T 2lvu_A 2 PYVCERCGKRFV 13 (26)
Confidence 457999998643
No 31
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=69.84 E-value=2.1 Score=15.41 Aligned_cols=10 Identities=50% Similarity=1.325 Sum_probs=8.0
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 2m0f_A 2 PLKCRECGKQ 11 (29)
T ss_dssp CEECTTTSCE
T ss_pred CccCCCCCCc
Confidence 4689999975
No 32
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=69.65 E-value=1.8 Score=15.53 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=7.2
Q ss_pred eecCCCCCe
Q 035423 11 IQCRECGYR 19 (35)
Q Consensus 11 irC~~CG~R 19 (35)
..|+.||..
T Consensus 2 ~~C~~C~k~ 10 (27)
T 1znf_A 2 YKCGLCERS 10 (27)
T ss_dssp CBCSSSCCB
T ss_pred ccCCCCCCc
Confidence 479999975
No 33
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=69.60 E-value=1.6 Score=15.81 Aligned_cols=10 Identities=40% Similarity=1.092 Sum_probs=7.9
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1klr_A 2 TYQCQYCEFR 11 (30)
T ss_dssp CCCCSSSSCC
T ss_pred CccCCCCCCc
Confidence 3579999976
No 34
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=68.70 E-value=1.9 Score=15.83 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=7.9
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1paa_A 2 AYACGLCNRA 11 (30)
T ss_dssp CSBCTTTCCB
T ss_pred CcCCcccCcc
Confidence 4679999975
No 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=68.45 E-value=1.9 Score=16.80 Aligned_cols=11 Identities=27% Similarity=0.767 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 10 k~~~C~~C~k~ 20 (37)
T 1p7a_A 10 KPFQCPDCDRS 20 (37)
T ss_dssp SSBCCTTTCCC
T ss_pred CCccCCCCCcc
Confidence 46899999975
No 36
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=67.92 E-value=1.6 Score=25.06 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=10.3
Q ss_pred CCceecCCCCCeEE
Q 035423 8 GDVIQCRECGYRIL 21 (35)
Q Consensus 8 ~~~irC~~CG~RIl 21 (35)
.+.+.||.||++=.
T Consensus 135 t~~~~Cp~C~~~~a 148 (178)
T 3po3_S 135 TDRFTCGKCKEKKV 148 (178)
T ss_dssp BSSSCCSSSCCSCE
T ss_pred cCCcCCCCCCCCce
Confidence 34578999998643
No 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=67.81 E-value=2.1 Score=15.45 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=7.9
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 1ard_A 2 SFVCEVCTRA 11 (29)
T ss_dssp CCBCTTTCCB
T ss_pred CeECCCCCcc
Confidence 4679999975
No 38
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.12 E-value=2.3 Score=20.54 Aligned_cols=11 Identities=45% Similarity=1.380 Sum_probs=6.5
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
....|..|||.
T Consensus 27 gaw~CrKCG~~ 37 (51)
T 3j21_g 27 GAKKCRKCGYK 37 (51)
T ss_dssp TCSSCSSSSSC
T ss_pred CceecCCCCCc
Confidence 34566666665
No 39
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=67.09 E-value=4.2 Score=19.31 Aligned_cols=12 Identities=25% Similarity=0.622 Sum_probs=9.7
Q ss_pred eecCCCCCeEEE
Q 035423 11 IQCRECGYRILY 22 (35)
Q Consensus 11 irC~~CG~RIly 22 (35)
..|.+||.-|.-
T Consensus 19 ~~C~~CG~~i~~ 30 (49)
T 2l8e_A 19 LKCEYCGKYAPA 30 (49)
T ss_dssp EECTTTCCEEEG
T ss_pred CcChhccCcccc
Confidence 459999998764
No 40
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=66.52 E-value=5 Score=22.17 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.5
Q ss_pred CeEEEeecCCceEEEEeC
Q 035423 18 YRILYKKRTRRIVQYEAR 35 (35)
Q Consensus 18 ~RIlyK~R~~~~~~~~Ar 35 (35)
+-|+++||+...+|||-+
T Consensus 35 ~~i~f~KRt~GiRqfEi~ 52 (108)
T 1kaf_A 35 YLAILEKRTNGIRNFEIN 52 (108)
T ss_dssp EEEEEEEEETTEEEEEEC
T ss_pred eEEeeecccCceeEEEEe
Confidence 568999999999999853
No 41
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.12 E-value=5.2 Score=15.23 Aligned_cols=12 Identities=33% Similarity=1.041 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 7 ~k~~~C~~C~k~ 18 (36)
T 2elt_A 7 GKPYKCPQCSYA 18 (36)
T ss_dssp CCSEECSSSSCE
T ss_pred CCCCCCCCCCcc
Confidence 456899999975
No 42
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=66.10 E-value=5.2 Score=19.28 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=11.9
Q ss_pred cCC-CCceecCCCCCeE
Q 035423 5 LKP-GDVIQCRECGYRI 20 (35)
Q Consensus 5 lk~-~~~irC~~CG~RI 20 (35)
|+. -..+.||.||.-.
T Consensus 21 l~~~p~l~~c~~cGe~~ 37 (56)
T 3r8s_0 21 LTAVTSLSVDKTSGEKH 37 (56)
T ss_dssp CCCCCCEEECTTTCCEE
T ss_pred cccCCceeECCCCCCee
Confidence 444 5679999999853
No 43
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=66.02 E-value=3.2 Score=21.72 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=11.8
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
.+|.|+|-+||..|
T Consensus 52 ~~D~V~Cf~C~~~l 65 (94)
T 2poi_A 52 EGDTVRCFSCHAAV 65 (94)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCEEEcccCCCEe
Confidence 57899999999764
No 44
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=65.93 E-value=3.1 Score=15.76 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=9.1
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 6 k~~~C~~C~k~ 16 (35)
T 2elx_A 6 SGYVCALCLKK 16 (35)
T ss_dssp CSEECSSSCCE
T ss_pred CCeECCCCcch
Confidence 46899999986
No 45
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.77 E-value=3 Score=16.12 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=10.1
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
..+..|+.||...
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2elq_A 7 GKPFKCSLCEYAT 19 (36)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCccCCCCCchh
Confidence 3468999999863
No 46
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=65.43 E-value=1.8 Score=22.80 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=7.9
Q ss_pred eecCCCCCeE
Q 035423 11 IQCRECGYRI 20 (35)
Q Consensus 11 irC~~CG~RI 20 (35)
.-||||+.|.
T Consensus 31 NiCPYC~nRl 40 (77)
T 2l7x_A 31 NICPYCASRL 40 (77)
T ss_dssp TCCTTTCCCC
T ss_pred ccChhhhccC
Confidence 3599999984
No 47
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=65.29 E-value=1.6 Score=21.56 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=9.7
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
-||||-.||.=|
T Consensus 2 iPVRCFTCGkvi 13 (55)
T 1ef4_A 2 IPVRCLSCGKPV 13 (55)
T ss_dssp CSSSCSCTTSCC
T ss_pred CCeecCCCCCCh
Confidence 379999999754
No 48
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=65.22 E-value=4.3 Score=20.64 Aligned_cols=18 Identities=17% Similarity=0.606 Sum_probs=14.2
Q ss_pred CCCCceecCCCCCeEEEe
Q 035423 6 KPGDVIQCRECGYRILYK 23 (35)
Q Consensus 6 k~~~~irC~~CG~RIlyK 23 (35)
.....+.||.||.-+.+.
T Consensus 5 ~~~~~~~CP~Cgkp~~W~ 22 (68)
T 1lv3_A 5 SETITVNCPTCGKTVVWG 22 (68)
T ss_dssp CCCCEEECTTTCCEEECS
T ss_pred CCCCcCcCCCCCCccccc
Confidence 445678999999998763
No 49
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=65.13 E-value=3.5 Score=21.16 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=8.8
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
+-.||-||..+
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 56799999764
No 50
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=65.09 E-value=3.3 Score=15.82 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=9.5
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
.+..|..||...
T Consensus 6 k~~~C~~C~k~f 17 (35)
T 1srk_A 6 RPFVCRICLSAF 17 (35)
T ss_dssp SCEECSSSCCEE
T ss_pred cCeeCCCCCccc
Confidence 457899999863
No 51
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.07 E-value=4.8 Score=15.46 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=9.7
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 7 ~k~~~C~~C~k~ 18 (36)
T 2els_A 7 GKIFTCEYCNKV 18 (36)
T ss_dssp CCCEECTTTCCE
T ss_pred CCCEECCCCCce
Confidence 456899999986
No 52
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.29 E-value=3.4 Score=16.08 Aligned_cols=12 Identities=17% Similarity=0.766 Sum_probs=9.6
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
.+..|+.||...
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elp_A 8 RAMKCPYCDFYF 19 (37)
T ss_dssp CCEECSSSSCEE
T ss_pred CCeECCCCChhh
Confidence 468999999863
No 53
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=64.09 E-value=3.2 Score=20.42 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=8.8
Q ss_pred eecCCCCCeEEE
Q 035423 11 IQCRECGYRILY 22 (35)
Q Consensus 11 irC~~CG~RIly 22 (35)
.+||.||.--|.
T Consensus 3 m~Cp~Cg~~~l~ 14 (78)
T 3ga8_A 3 MKCPVCHQGEMV 14 (78)
T ss_dssp CBCTTTSSSBEE
T ss_pred eECCCCCCCeeE
Confidence 589999975343
No 54
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=63.46 E-value=2.9 Score=22.52 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=8.8
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
.+.||.||++
T Consensus 72 ~~~Cp~C~~~ 81 (122)
T 1twf_I 72 DRECPKCHSR 81 (122)
T ss_dssp CCCCTTTCCC
T ss_pred CCCCCCCCCC
Confidence 5789999998
No 55
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=63.22 E-value=7.2 Score=19.48 Aligned_cols=15 Identities=13% Similarity=0.636 Sum_probs=7.8
Q ss_pred CCCcee-cCCCCCeEE
Q 035423 7 PGDVIQ-CRECGYRIL 21 (35)
Q Consensus 7 ~~~~ir-C~~CG~RIl 21 (35)
..+.++ ||.|++-++
T Consensus 21 ~~~~~~wCP~C~~~~~ 36 (86)
T 2ct7_A 21 RDPKFLWCAQCSFGFI 36 (86)
T ss_dssp SCCCEECCSSSCCCEE
T ss_pred cCCCEeECcCCCchhe
Confidence 334444 666666543
No 56
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=62.96 E-value=1.9 Score=22.77 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=9.4
Q ss_pred ce-ecCCCCCeEEE
Q 035423 10 VI-QCRECGYRILY 22 (35)
Q Consensus 10 ~i-rC~~CG~RIly 22 (35)
.. .||.||+..++
T Consensus 89 ~~~~CP~Cgs~~~~ 102 (119)
T 2kdx_A 89 DYGVCEKCHSKNVI 102 (119)
T ss_dssp TTCCCSSSSSCCCE
T ss_pred CCCcCccccCCCcE
Confidence 45 79999887544
No 57
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=62.44 E-value=2.9 Score=22.84 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=8.3
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+.+||.|+..
T Consensus 82 ~kPsrCP~CkSe 93 (105)
T 2gmg_A 82 NIPSRCPKCKSE 93 (105)
T ss_dssp SCCSSCSSSCCC
T ss_pred CCCCCCcCCCCC
Confidence 456778888764
No 58
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=62.44 E-value=2.9 Score=27.03 Aligned_cols=10 Identities=30% Similarity=1.165 Sum_probs=8.6
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
...|++||||
T Consensus 41 Sf~C~~CGyr 50 (404)
T 2qkd_A 41 SFSCEHCGWN 50 (404)
T ss_dssp EEECTTTCCE
T ss_pred EEECCCCCCc
Confidence 5689999998
No 59
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.37 E-value=4 Score=15.74 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 7 ~k~~~C~~C~k~ 18 (36)
T 2elv_A 7 GLLYDCHICERK 18 (36)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCeECCCCCCc
Confidence 346899999976
No 60
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=62.34 E-value=4.4 Score=21.08 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=11.5
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
..|.|+|-+||..+
T Consensus 45 ~~D~v~Cf~C~~~l 58 (97)
T 3d9t_A 45 RNDDVKCFCCDGGL 58 (97)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCEEEecCcCCEe
Confidence 46889999999864
No 61
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.54 E-value=3.9 Score=16.14 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=9.7
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
.+..|+.||...
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elm_A 8 HLYYCSQCHYSS 19 (37)
T ss_dssp CEEECSSSSCEE
T ss_pred cCeECCCCCccc
Confidence 468999999874
No 62
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=61.32 E-value=4.3 Score=22.03 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=12.3
Q ss_pred CCCCceecCCCCCeE
Q 035423 6 KPGDVIQCRECGYRI 20 (35)
Q Consensus 6 k~~~~irC~~CG~RI 20 (35)
..+|.|+|-+||..|
T Consensus 68 g~~D~V~Cf~C~~~L 82 (111)
T 2qra_D 68 GEGDTVRCFSCHAAV 82 (111)
T ss_dssp SSTTCEEETTTCCEE
T ss_pred CCCCEEEcccCCCEe
Confidence 357899999999764
No 63
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=61.13 E-value=2.4 Score=16.35 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=7.7
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 3579999975
No 64
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=61.10 E-value=2.5 Score=21.73 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.8
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
-||||-.||.=|
T Consensus 3 iPVRCFTCGkvi 14 (70)
T 1twf_J 3 VPVRCFSCGKVV 14 (70)
T ss_dssp CCSBCTTTCCBC
T ss_pred CCeecCCCCCCh
Confidence 479999999754
No 65
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=60.93 E-value=9 Score=16.63 Aligned_cols=17 Identities=35% Similarity=0.768 Sum_probs=13.1
Q ss_pred CCCCceecCCCCCeEEE
Q 035423 6 KPGDVIQCRECGYRILY 22 (35)
Q Consensus 6 k~~~~irC~~CG~RIly 22 (35)
+...-.+|+.||+=|..
T Consensus 2 k~~~fY~C~~CGnivev 18 (36)
T 1dxg_A 2 NEGDVYKCELCGQVVKV 18 (36)
T ss_dssp CTTCEEECTTTCCEEEE
T ss_pred CcccEEEcCCCCcEEEE
Confidence 45677899999987654
No 66
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=60.73 E-value=3 Score=22.90 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=10.3
Q ss_pred ceecCCCCCeEEE
Q 035423 10 VIQCRECGYRILY 22 (35)
Q Consensus 10 ~irC~~CG~RIly 22 (35)
...||.||+.=++
T Consensus 107 ~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 107 FLACPKCGSHDFE 119 (139)
T ss_dssp GCSCSSSSCCCEE
T ss_pred CCcCccccCCccE
Confidence 6789999988554
No 67
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=59.84 E-value=3.2 Score=16.09 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=7.8
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 2 p~~C~~C~k~ 11 (33)
T 1rim_A 2 KFACPECPKR 11 (33)
T ss_dssp CCCCSSSCCC
T ss_pred cccCCCCCch
Confidence 3579999975
No 68
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=59.83 E-value=5.3 Score=20.40 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=11.7
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
..|.|+|-+||-.+
T Consensus 43 ~~D~v~Cf~C~~~l 56 (85)
T 3m1d_A 43 VNDKVKCFCCGLML 56 (85)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCEEEeCCcCCEe
Confidence 46899999999764
No 69
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=59.42 E-value=11 Score=19.36 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=12.3
Q ss_pred eecCCCCCeEEEeec
Q 035423 11 IQCRECGYRILYKKR 25 (35)
Q Consensus 11 irC~~CG~RIlyK~R 25 (35)
.-|+.||..+.+...
T Consensus 68 ~FC~~CGs~l~~~~~ 82 (118)
T 3fac_A 68 WFCRTCGIYTHHQRR 82 (118)
T ss_dssp EEETTTCCEEEEECS
T ss_pred EECCCCCccccCccC
Confidence 469999999888754
No 70
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=59.32 E-value=5.8 Score=19.41 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=9.3
Q ss_pred cCCCCceecCCCCC
Q 035423 5 LKPGDVIQCRECGY 18 (35)
Q Consensus 5 lk~~~~irC~~CG~ 18 (35)
|+.-..+.||.||.
T Consensus 25 l~~p~l~~c~~cGe 38 (60)
T 3v2d_5 25 LTPPTLVPCPECKA 38 (60)
T ss_dssp CCCCCCEECTTTCC
T ss_pred ccCCceeECCCCCC
Confidence 44555677777776
No 71
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=63.49 E-value=2 Score=15.74 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=8.3
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
+..|+.||...
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2lvt_A 2 PCQCVMCGKAF 12 (29)
Confidence 45799999763
No 72
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.72 E-value=5.8 Score=18.78 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=7.8
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
.++.|++||..+
T Consensus 42 ~~~~C~~C~~~~ 53 (75)
T 2d9k_A 42 RTELCGNCGRNV 53 (75)
T ss_dssp CEEECSSSCCEE
T ss_pred CceEcccCCCcC
Confidence 356777777753
No 73
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=58.52 E-value=4.7 Score=18.88 Aligned_cols=8 Identities=50% Similarity=1.398 Sum_probs=4.3
Q ss_pred eecCCCCC
Q 035423 11 IQCRECGY 18 (35)
Q Consensus 11 irC~~CG~ 18 (35)
-+|+.|||
T Consensus 5 y~C~vCGy 12 (46)
T 6rxn_A 5 YVCNVCGY 12 (46)
T ss_dssp EEETTTCC
T ss_pred EECCCCCe
Confidence 45555554
No 74
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=58.38 E-value=4.7 Score=19.31 Aligned_cols=17 Identities=35% Similarity=0.770 Sum_probs=12.6
Q ss_pred CCceecCCCCCeEEEee
Q 035423 8 GDVIQCRECGYRILYKK 24 (35)
Q Consensus 8 ~~~irC~~CG~RIlyK~ 24 (35)
.+...|..||+-.++|.
T Consensus 34 ~dr~~C~kCgyt~~~~~ 50 (55)
T 2k4x_A 34 ADRYSCGRCGYTEFKKA 50 (55)
T ss_dssp SSEEECTTTCCCEECCC
T ss_pred CCEEECCCCCCEEEeCc
Confidence 46778888888876654
No 75
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=62.76 E-value=2.1 Score=15.59 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=8.5
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
+..|+.||...
T Consensus 3 ~~~C~~C~k~f 13 (30)
T 2lvr_A 3 PYVCIHCQRQF 13 (30)
Confidence 46799999864
No 76
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=57.87 E-value=5.2 Score=15.79 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 5 k~~~C~~C~k~ 15 (39)
T 1njq_A 5 RSYTCSFCKRE 15 (39)
T ss_dssp SSEECTTTCCE
T ss_pred CceECCCCCcc
Confidence 35799999976
No 77
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=57.59 E-value=3.9 Score=21.20 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=13.5
Q ss_pred CCCceecCCCCCeEEEee
Q 035423 7 PGDVIQCRECGYRILYKK 24 (35)
Q Consensus 7 ~~~~irC~~CG~RIlyK~ 24 (35)
..+..-||.||+.-|.|.
T Consensus 27 ~~~k~FCp~CGn~TL~Rv 44 (79)
T 2con_A 27 DMNRVFCGHCGNKTLKKV 44 (79)
T ss_dssp CSSCCSCSSSCCSCCEEE
T ss_pred CcccccccccCcccceEE
Confidence 345678999999877653
No 78
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.19 E-value=3.4 Score=15.98 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 8 k~~~C~~C~k~ 18 (37)
T 2elo_A 8 RSYSCPVCEKS 18 (37)
T ss_dssp CCCEETTTTEE
T ss_pred CCcCCCCCCCc
Confidence 45789999975
No 79
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.11 E-value=5.4 Score=15.88 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=10.0
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
..+..|+.||...
T Consensus 9 ~k~~~C~~C~k~f 21 (42)
T 2en2_A 9 EKPYKCETCGARF 21 (42)
T ss_dssp SCSEECTTTCCEE
T ss_pred CCCEeCCCcChhh
Confidence 3468999999863
No 80
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=57.08 E-value=6 Score=21.57 Aligned_cols=15 Identities=33% Similarity=0.826 Sum_probs=12.2
Q ss_pred CCCCceecCCCCCeE
Q 035423 6 KPGDVIQCRECGYRI 20 (35)
Q Consensus 6 k~~~~irC~~CG~RI 20 (35)
..+|.|+|-+||..+
T Consensus 56 g~~D~V~Cf~C~~~L 70 (121)
T 1g73_C 56 GEGDKVKCFHCGGGL 70 (121)
T ss_dssp SSTTCEEETTTCCEE
T ss_pred CCCCEEEcCcCCCCc
Confidence 357889999999764
No 81
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=57.01 E-value=6.2 Score=20.46 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=11.9
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
.+|.|+|-+||-.+
T Consensus 43 ~~D~v~Cf~C~~~l 56 (95)
T 3hl5_A 43 EGDKVKCFHCGGGL 56 (95)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCeEEecCCCCCc
Confidence 57899999999874
No 82
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=56.65 E-value=5.6 Score=15.75 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 9 ~~~~~C~~C~k~ 20 (42)
T 2epc_A 9 ETPYLCGQCGKS 20 (42)
T ss_dssp SCCEECSSSCCE
T ss_pred CCCeECCCCCcc
Confidence 346899999986
No 83
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.10 E-value=4.5 Score=15.44 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=9.2
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 7 ~~~~~C~~C~k~ 18 (36)
T 2elr_A 7 GKTHLCDMCGKK 18 (36)
T ss_dssp CSSCBCTTTCCB
T ss_pred CCCeecCcCCCC
Confidence 346789999975
No 84
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=55.97 E-value=3.6 Score=23.38 Aligned_cols=10 Identities=50% Similarity=1.298 Sum_probs=8.4
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
.-+|+.|||-
T Consensus 155 ~~~C~~CG~~ 164 (191)
T 1lko_A 155 KWRCRNCGYV 164 (191)
T ss_dssp EEEETTTCCE
T ss_pred eEEECCCCCE
Confidence 5789999985
No 85
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=55.95 E-value=6 Score=21.02 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.1
Q ss_pred CCCCceecCCCCCeE
Q 035423 6 KPGDVIQCRECGYRI 20 (35)
Q Consensus 6 k~~~~irC~~CG~RI 20 (35)
..+|.|+|-+||..+
T Consensus 52 g~~D~V~Cf~C~~~L 66 (106)
T 2vm5_A 52 GKQDTVQCFSCGGCL 66 (106)
T ss_dssp SSTTCEEETTTCCEE
T ss_pred CCCCEEEccccCCEe
Confidence 357889999999764
No 86
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=55.51 E-value=4.7 Score=20.53 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=8.2
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..|+||.|+.-
T Consensus 6 m~VKCp~C~ni 16 (66)
T 1qxf_A 6 VKVKCPDCEHE 16 (66)
T ss_dssp EEEECTTTCCE
T ss_pred EEEECCCCCCc
Confidence 35889999864
No 87
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=55.33 E-value=7.5 Score=21.36 Aligned_cols=14 Identities=36% Similarity=0.869 Sum_probs=12.0
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
.+|.|+|-+||..|
T Consensus 57 ~~D~V~Cf~C~~~L 70 (124)
T 1jd5_A 57 VGDRVRCFSCGGGL 70 (124)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCEEEecCCCCEe
Confidence 47899999999875
No 88
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.32 E-value=4.8 Score=20.29 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=8.7
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..|+||.|+.-
T Consensus 14 m~VkCp~C~~~ 24 (63)
T 3j20_W 14 LRVKCIDCGNE 24 (63)
T ss_dssp EEEECSSSCCE
T ss_pred EEEECCCCCCe
Confidence 35899999874
No 89
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.15 E-value=6 Score=15.95 Aligned_cols=11 Identities=18% Similarity=0.610 Sum_probs=9.2
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (44)
T 2emb_A 11 KRYECSKCQAT 21 (44)
T ss_dssp SSEECTTTCCE
T ss_pred CCeECCCCCCc
Confidence 46899999986
No 90
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=54.91 E-value=6.9 Score=21.18 Aligned_cols=14 Identities=43% Similarity=0.959 Sum_probs=11.9
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
.+|.|+|-+||..+
T Consensus 45 ~~D~V~Cf~C~~~L 58 (116)
T 1se0_A 45 AGDKVKCFFCGVEI 58 (116)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCEEEecCcCCEe
Confidence 57889999999874
No 91
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=54.61 E-value=7.8 Score=18.91 Aligned_cols=15 Identities=20% Similarity=0.645 Sum_probs=10.1
Q ss_pred cCCCCceecCCCCCe
Q 035423 5 LKPGDVIQCRECGYR 19 (35)
Q Consensus 5 lk~~~~irC~~CG~R 19 (35)
|..-..+.|+.||.-
T Consensus 25 l~~p~l~~c~~cG~~ 39 (60)
T 2zjr_Z 25 LTAPNLTECPQCHGK 39 (60)
T ss_dssp CCCCCCEECTTTCCE
T ss_pred ccCCCceECCCCCCE
Confidence 455566778877764
No 92
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=54.57 E-value=4.7 Score=23.16 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=10.0
Q ss_pred CCCCceecCCCCCe
Q 035423 6 KPGDVIQCRECGYR 19 (35)
Q Consensus 6 k~~~~irC~~CG~R 19 (35)
..++..-||+|||-
T Consensus 40 eDg~l~vCPeC~hE 53 (138)
T 2akl_A 40 EDGALLVCPECAHE 53 (138)
T ss_dssp ECSSSEEETTTTEE
T ss_pred ecCCeEECCccccc
Confidence 34566788888875
No 93
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=54.44 E-value=6.9 Score=21.59 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=11.0
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
.|.|+|-+||..|
T Consensus 52 ~D~V~Cf~C~~~L 64 (142)
T 2qfa_A 52 PDLAQCFFCFKEL 64 (142)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCEEEcCCCCCEe
Confidence 4889999999764
No 94
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.34 E-value=6.4 Score=15.95 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eow_A 10 EKPYKCNECGKA 21 (46)
T ss_dssp CCCEECTTSCCE
T ss_pred CCCeeccccCCh
Confidence 346899999986
No 95
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=53.93 E-value=6.8 Score=22.09 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=8.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
...-+|+.|||-
T Consensus 136 ~~~~~C~~CG~i 147 (170)
T 3pwf_A 136 KKVYICPICGYT 147 (170)
T ss_dssp SCEEECTTTCCE
T ss_pred CCeeEeCCCCCe
Confidence 345678888884
No 96
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.82 E-value=6.6 Score=15.55 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 8 ~k~~~C~~C~k~ 19 (41)
T 2ept_A 8 QRVYECQECGKS 19 (41)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCeECCCCCCC
Confidence 346899999976
No 97
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=53.70 E-value=6.8 Score=18.55 Aligned_cols=8 Identities=50% Similarity=1.377 Sum_probs=4.3
Q ss_pred eecCCCCC
Q 035423 11 IQCRECGY 18 (35)
Q Consensus 11 irC~~CG~ 18 (35)
-+|+.|||
T Consensus 4 y~C~~CGy 11 (52)
T 1e8j_A 4 YVCTVCGY 11 (52)
T ss_dssp EECSSSCC
T ss_pred EEeCCCCe
Confidence 45555554
No 98
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=53.63 E-value=5.7 Score=21.45 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=10.8
Q ss_pred eecCCCCCeEEEee
Q 035423 11 IQCRECGYRILYKK 24 (35)
Q Consensus 11 irC~~CG~RIlyK~ 24 (35)
--||.||.+.-+..
T Consensus 4 ~~C~~CG~~~~~~~ 17 (189)
T 3cng_A 4 KFCSQCGGEVILRI 17 (189)
T ss_dssp CBCTTTCCBCEEEC
T ss_pred ccCchhCCcccccc
Confidence 35999999977654
No 99
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=53.43 E-value=7 Score=20.30 Aligned_cols=13 Identities=23% Similarity=0.884 Sum_probs=8.9
Q ss_pred CCCceecCCCCCe
Q 035423 7 PGDVIQCRECGYR 19 (35)
Q Consensus 7 ~~~~irC~~CG~R 19 (35)
....-+|+.|||-
T Consensus 24 em~~y~C~vCGyv 36 (81)
T 2kn9_A 24 DYKLFRCIQCGFE 36 (81)
T ss_dssp CCCEEEETTTCCE
T ss_pred CcceEEeCCCCEE
Confidence 3456788888873
No 100
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.25 E-value=6.8 Score=15.90 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (44)
T 2epv_A 10 EKPYECNECGKA 21 (44)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCeECCCCCcc
Confidence 346899999986
No 101
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=52.91 E-value=4.4 Score=16.53 Aligned_cols=8 Identities=13% Similarity=-0.047 Sum_probs=4.0
Q ss_pred ceecCCCC
Q 035423 10 VIQCRECG 17 (35)
Q Consensus 10 ~irC~~CG 17 (35)
+..|+.||
T Consensus 38 ~~~C~~cg 45 (45)
T 2epq_A 38 GKSGPSSG 45 (45)
T ss_dssp CCCCCCCC
T ss_pred CCCCcCCC
Confidence 34455554
No 102
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.74 E-value=7 Score=15.82 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2yrj_A 10 EKPYRCGECGKA 21 (46)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCeECCCCCCc
Confidence 346899999986
No 103
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=52.53 E-value=6.8 Score=15.99 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emj_A 10 EKPFECAECGKS 21 (46)
T ss_dssp CCSEECSSSSCE
T ss_pred CCCEECCCCCcc
Confidence 346899999976
No 104
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.46 E-value=6.9 Score=15.75 Aligned_cols=11 Identities=18% Similarity=0.703 Sum_probs=9.2
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (44)
T 2yu5_A 11 NPFKCSKCDRV 21 (44)
T ss_dssp CSEECSSSSCE
T ss_pred CCeECCCCCch
Confidence 46899999986
No 105
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=52.04 E-value=6.4 Score=22.60 Aligned_cols=17 Identities=29% Similarity=0.952 Sum_probs=13.5
Q ss_pred CCceecCCCCCeEEEee
Q 035423 8 GDVIQCRECGYRILYKK 24 (35)
Q Consensus 8 ~~~irC~~CG~RIlyK~ 24 (35)
|..-.||.|+.++.|..
T Consensus 76 Gal~~CP~C~G~l~y~~ 92 (160)
T 2riq_A 76 GALLPCEECSGQLVFKS 92 (160)
T ss_dssp CEECCCTTTCCCEEEET
T ss_pred CCCCCCCCCCCEEEEeC
Confidence 44568999999998864
No 106
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=51.89 E-value=8 Score=21.75 Aligned_cols=14 Identities=43% Similarity=0.959 Sum_probs=12.0
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
.+|.++|-+||..+
T Consensus 67 ~~D~V~Cf~C~~~L 80 (136)
T 3siq_A 67 AGDKVKCFFCGVEI 80 (136)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCeEEEeccCCEe
Confidence 57899999999874
No 107
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=51.78 E-value=5 Score=23.16 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..-+|+.|||-
T Consensus 170 ~~~~C~~CG~i 180 (202)
T 1yuz_A 170 KFHLCPICGYI 180 (202)
T ss_dssp CEEECSSSCCE
T ss_pred cEEEECCCCCE
Confidence 45789999985
No 108
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=51.65 E-value=9.2 Score=18.41 Aligned_cols=13 Identities=0% Similarity=0.107 Sum_probs=11.0
Q ss_pred ecCCCCCeEEEee
Q 035423 12 QCRECGYRILYKK 24 (35)
Q Consensus 12 rC~~CG~RIlyK~ 24 (35)
-||.|+...|+|+
T Consensus 40 ycp~~~kHtlhkE 52 (55)
T 2zjr_1 40 YDPVAKKHVVFRE 52 (55)
T ss_pred cCCCCCCEEeEEE
Confidence 4899999999887
No 109
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=51.25 E-value=9 Score=18.18 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=10.6
Q ss_pred ecCCCCCeEEEee
Q 035423 12 QCRECGYRILYKK 24 (35)
Q Consensus 12 rC~~CG~RIlyK~ 24 (35)
-||.|+.-.|||+
T Consensus 38 ycp~~~khtlhkE 50 (52)
T 2ftc_P 38 YDPVVKQRVLFVE 50 (52)
T ss_pred cCCCCCceEeEEe
Confidence 3888888888886
No 110
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.22 E-value=7.6 Score=15.69 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2yts_A 10 EKPYICNECGKS 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCEECCCCChh
Confidence 346899999976
No 111
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=51.14 E-value=3.3 Score=21.21 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=12.0
Q ss_pred cccCCCCceecCCCCC
Q 035423 3 NTLKPGDVIQCRECGY 18 (35)
Q Consensus 3 ~~lk~~~~irC~~CG~ 18 (35)
.++++...-.||.||.
T Consensus 20 ie~~q~~ky~C~fCgk 35 (73)
T 1ffk_W 20 VEIKHKKKYKCPVCGF 35 (73)
T ss_pred HHHhcccCccCCCCCC
Confidence 4566677788999986
No 112
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.10 E-value=7.7 Score=15.81 Aligned_cols=11 Identities=18% Similarity=0.739 Sum_probs=9.1
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eoy_A 11 KCFKCNKCEKT 21 (46)
T ss_dssp CCEECSSSCCE
T ss_pred CCEECcCCCCc
Confidence 46899999976
No 113
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.04 E-value=7.7 Score=15.80 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2yto_A 10 EKPYKCSDCGKA 21 (46)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCEECcccCCc
Confidence 346899999986
No 114
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=50.95 E-value=8 Score=21.13 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=11.9
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
.+|.|+|-.||-.+
T Consensus 51 ~~D~V~Cf~C~~~L 64 (122)
T 3mup_A 51 RNDDVKCFCCDGGL 64 (122)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCeEEecCcCCEe
Confidence 46899999999874
No 115
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=50.86 E-value=3.2 Score=22.96 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=0.0
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
.+.||.||++=
T Consensus 92 ~~~CpkCg~~~ 102 (133)
T 3qt1_I 92 DRECPKCHSRE 102 (133)
T ss_dssp -----------
T ss_pred cCCCCCCCCce
Confidence 48999999863
No 116
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.77 E-value=5.7 Score=16.25 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eoz_A 10 EKPYSCNVCGKA 21 (46)
T ss_dssp CCSEEETTTTEE
T ss_pred CCCeECcccChh
Confidence 346899999976
No 117
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.61 E-value=5.9 Score=15.68 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 10 k~~~C~~C~k~ 20 (42)
T 2ytb_A 10 KPYRCDQCGKA 20 (42)
T ss_dssp CSBCCTTTTCC
T ss_pred CCeeCCCccch
Confidence 46789999975
No 118
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.58 E-value=7.9 Score=15.77 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytp_A 10 ERHYECSECGKA 21 (46)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCeECCcCCcc
Confidence 346889999976
No 119
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.49 E-value=8 Score=15.63 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eme_A 10 EKPYVCDYCGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeECCCCChh
Confidence 346899999976
No 120
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.43 E-value=8 Score=15.76 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=9.1
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2em4_A 11 RPYECIECGKA 21 (46)
T ss_dssp SSEECSSSCCE
T ss_pred cCcCCCCCCCc
Confidence 46899999976
No 121
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.19 E-value=6.2 Score=15.73 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 10 k~~~C~~C~k~ 20 (42)
T 2eos_A 10 KPYPCEICGTR 20 (42)
T ss_dssp CCBCCSSSCCC
T ss_pred CCEECCCCCCc
Confidence 46789999975
No 122
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=50.19 E-value=7.3 Score=18.64 Aligned_cols=8 Identities=50% Similarity=1.319 Sum_probs=4.5
Q ss_pred eecCCCCC
Q 035423 11 IQCRECGY 18 (35)
Q Consensus 11 irC~~CG~ 18 (35)
-+|+.|||
T Consensus 4 y~C~~CGy 11 (55)
T 2v3b_B 4 WQCVVCGF 11 (55)
T ss_dssp EEETTTCC
T ss_pred EEeCCCCe
Confidence 45566665
No 123
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.18 E-value=8.1 Score=15.67 Aligned_cols=12 Identities=42% Similarity=1.043 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2en3_A 10 EKPFQCKECGMN 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeeCcccChh
Confidence 346899999986
No 124
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=50.17 E-value=6.3 Score=18.85 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.9
Q ss_pred ccccCCCCceecCCCCC
Q 035423 2 ENTLKPGDVIQCRECGY 18 (35)
Q Consensus 2 ~~~lk~~~~irC~~CG~ 18 (35)
|.+|...|--+|++|+.
T Consensus 5 D~di~~~D~WkC~~C~~ 21 (46)
T 2c6a_A 5 DPEISLADYWKCTSCNE 21 (46)
T ss_dssp CSSSCGGGCEECTTTCC
T ss_pred CCccCccceEecccccc
Confidence 56777889999999984
No 125
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=50.14 E-value=8.2 Score=15.26 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 8 ~k~~~C~~C~k~ 19 (42)
T 2el5_A 8 ENPYECSECGKA 19 (42)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCccCCCcChh
Confidence 346899999976
No 126
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=49.99 E-value=7.2 Score=21.87 Aligned_cols=14 Identities=43% Similarity=1.047 Sum_probs=11.0
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
....++||+||..-
T Consensus 153 ~~~~~~cp~~g~~e 166 (179)
T 3m7n_A 153 EGDILKCPECGRVE 166 (179)
T ss_dssp CSSSEECSSSCCEE
T ss_pred CCCEEECCCCCCEE
Confidence 34789999999863
No 127
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=49.87 E-value=8.5 Score=16.36 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=10.0
Q ss_pred CCCceecCCCCCe
Q 035423 7 PGDVIQCRECGYR 19 (35)
Q Consensus 7 ~~~~irC~~CG~R 19 (35)
...+..|+.||..
T Consensus 5 gekp~~C~~CgK~ 17 (36)
T 1fv5_A 5 KPARFMCLPCGIA 17 (36)
T ss_dssp SCCCCEETTTTEE
T ss_pred CccCeECCCCCCc
Confidence 3457899999975
No 128
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.83 E-value=8.2 Score=15.59 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2eor_A 10 EKPYNCEECGKA 21 (46)
T ss_dssp CCSEECTTTCCE
T ss_pred CcCccCCCCCCC
Confidence 346899999976
No 129
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=49.75 E-value=8.4 Score=21.49 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.2
Q ss_pred CCCCceecCCCCCeE
Q 035423 6 KPGDVIQCRECGYRI 20 (35)
Q Consensus 6 k~~~~irC~~CG~RI 20 (35)
...|.|+|-+||..|
T Consensus 78 g~~D~V~Cf~C~~~L 92 (133)
T 2i3h_A 78 GHQDKVRCFFCYGGL 92 (133)
T ss_dssp SSTTCEEETTTCCEE
T ss_pred CCCCEEEecccCCEe
Confidence 347889999999764
No 130
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.46 E-value=8.4 Score=15.67 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em2_A 10 EKPFKCKECGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCEECCcCCch
Confidence 346899999986
No 131
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.12 E-value=8.6 Score=15.58 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ep3_A 10 EKPYRCAECGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeECCCCCch
Confidence 346899999986
No 132
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.12 E-value=8.6 Score=15.58 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2emi_A 10 ERHYECSECGKA 21 (46)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCCCCCCCCcc
Confidence 346899999976
No 133
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=49.06 E-value=8.6 Score=15.51 Aligned_cols=12 Identities=33% Similarity=0.875 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em9_A 10 EKPYNCKECGKS 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCeECCccccc
Confidence 346899999976
No 134
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=49.05 E-value=5.4 Score=20.78 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=9.2
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..-.||.|||-
T Consensus 22 t~F~CPfCnh~ 32 (85)
T 1wii_A 22 TQFTCPFCNHE 32 (85)
T ss_dssp SCCCCTTTCCS
T ss_pred CeEcCCCCCCC
Confidence 45689999998
No 135
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.99 E-value=8.7 Score=15.57 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytj_A 10 EKPYICAECGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCeECCCCChh
Confidence 346899999986
No 136
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.88 E-value=6.7 Score=15.94 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.4
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2enf_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp CCSCBCSSSCCB
T ss_pred CcCeECCCCCcc
Confidence 346789999976
No 137
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=48.72 E-value=9.4 Score=18.37 Aligned_cols=12 Identities=17% Similarity=0.507 Sum_probs=9.2
Q ss_pred cCCCCCeEEEee
Q 035423 13 CRECGYRILYKK 24 (35)
Q Consensus 13 C~~CG~RIlyK~ 24 (35)
||.|+.-.|+|+
T Consensus 40 cp~c~kHtlhkE 51 (54)
T 3v2d_6 40 CPWCRKHTVHRE 51 (54)
T ss_dssp ETTTTEEEEEEE
T ss_pred CCCCCCEeeEEE
Confidence 777877777775
No 138
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.67 E-value=8.8 Score=15.48 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytf_A 10 EKPFECSECQKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCcCCCCCCcc
Confidence 346899999976
No 139
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.66 E-value=8.8 Score=15.55 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq0_A 10 EKPYKCHECGKV 21 (46)
T ss_dssp CCCEECTTTCCE
T ss_pred CCCeECCCCCch
Confidence 446899999986
No 140
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.37 E-value=9 Score=15.45 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=9.1
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2epw_A 11 KPCKCTECGKA 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred CCeeCCCCCCc
Confidence 46899999986
No 141
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.19 E-value=9.1 Score=15.56 Aligned_cols=12 Identities=42% Similarity=1.057 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emf_A 10 GKHFECTECGKA 21 (46)
T ss_dssp SCCEECSSSCCE
T ss_pred CCCeECCCCCch
Confidence 346899999976
No 142
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=48.13 E-value=5.9 Score=18.76 Aligned_cols=8 Identities=50% Similarity=1.680 Sum_probs=5.8
Q ss_pred eecCCCCC
Q 035423 11 IQCRECGY 18 (35)
Q Consensus 11 irC~~CG~ 18 (35)
-+|+.|||
T Consensus 3 ~~C~~CGy 10 (52)
T 1yk4_A 3 LSCKICGY 10 (52)
T ss_dssp EEESSSSC
T ss_pred EEeCCCCe
Confidence 46777876
No 143
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.08 E-value=7 Score=16.00 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=9.3
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eon_A 10 EKPYKCQVCGKA 21 (46)
T ss_dssp CCSCBCSSSCCB
T ss_pred CcccCCCCCCcc
Confidence 346789999976
No 144
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.06 E-value=8.9 Score=15.38 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 8 ~k~~~C~~C~k~ 19 (44)
T 2emx_A 8 EKPFGCSCCEKA 19 (44)
T ss_dssp CCCEECSSSSCE
T ss_pred CcCccCCCCCcc
Confidence 346899999986
No 145
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.06 E-value=9.2 Score=15.49 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emy_A 10 ENPYECHECGKA 21 (46)
T ss_dssp SCCEECSSSCCE
T ss_pred CcCcCCCCCCcc
Confidence 346899999986
No 146
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.94 E-value=9.2 Score=15.48 Aligned_cols=11 Identities=36% Similarity=0.908 Sum_probs=9.2
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2em7_A 11 KPYKCEECGKG 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred cCccCCCccch
Confidence 46899999976
No 147
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=47.93 E-value=9.2 Score=15.48 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ema_A 10 EKRYKCNECGKV 21 (46)
T ss_dssp SCCEECSSSCCE
T ss_pred CcCcCCCCCcch
Confidence 346899999976
No 148
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.93 E-value=5.8 Score=15.92 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (44)
T 2eoj_A 11 NPYECCECGKV 21 (44)
T ss_dssp CSCEETTTTEE
T ss_pred cCeeCCCCCCc
Confidence 46899999975
No 149
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.89 E-value=9.2 Score=15.20 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (44)
T 2eof_A 10 EKPYECNECQKA 21 (44)
T ss_dssp CCSEECTTTCCE
T ss_pred CCCeECCCCCcc
Confidence 346899999976
No 150
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=47.86 E-value=8.9 Score=16.33 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=9.1
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 23 k~~~C~~C~k~ 33 (54)
T 1yui_A 23 QPATCPICYAV 33 (54)
T ss_dssp CCEECTTTCCE
T ss_pred CCccCCCCCcc
Confidence 46889999976
No 151
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.85 E-value=7.1 Score=15.40 Aligned_cols=11 Identities=27% Similarity=0.612 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 9 k~~~C~~C~k~ 19 (42)
T 2yte_A 9 KPYSCAECKET 19 (42)
T ss_dssp CSCBCTTTCCB
T ss_pred CCeECCCCCCc
Confidence 45789999975
No 152
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=47.78 E-value=8.8 Score=16.10 Aligned_cols=11 Identities=27% Similarity=0.769 Sum_probs=8.3
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 31 ~~~~C~~C~~~ 41 (57)
T 3uk3_C 31 KPYKCEFCEYA 41 (57)
T ss_dssp CCEECSSSSCE
T ss_pred CCcCCCCCcch
Confidence 35789999875
No 153
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=47.32 E-value=9.3 Score=16.10 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|..||..
T Consensus 6 kp~~C~~C~k~ 16 (48)
T 3iuf_A 6 KPYACDICGKR 16 (48)
T ss_dssp SCEECTTTCCE
T ss_pred cCEECCCcCcc
Confidence 35789999976
No 154
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.09 E-value=9.7 Score=15.41 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emp_A 10 VKPYMCNECGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCeECCCCCch
Confidence 346899999986
No 155
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.07 E-value=9.7 Score=15.41 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2em3_A 10 EKPYECKVCSKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCeECCCCCcc
Confidence 346899999976
No 156
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=46.73 E-value=8.8 Score=21.51 Aligned_cols=14 Identities=43% Similarity=0.902 Sum_probs=11.7
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
.+|.|+|-+||..|
T Consensus 75 ~~D~V~Cf~C~~~L 88 (141)
T 1i4o_C 75 IGDQVQCFCCGGKL 88 (141)
T ss_pred CCCEEEeccCCCEe
Confidence 47889999999764
No 157
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.70 E-value=11 Score=18.77 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=9.4
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
..++|+.|+|++
T Consensus 27 ~g~~C~~C~h~f 38 (74)
T 2ct0_A 27 QGQSCETCGIRM 38 (74)
T ss_dssp SSEECSSSCCEE
T ss_pred cCCccCCCCchh
Confidence 457899999874
No 158
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.67 E-value=9.9 Score=15.38 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2yu8_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp CSSEECSSSCCE
T ss_pred CCCeECCcCCch
Confidence 346899999976
No 159
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.67 E-value=5.9 Score=16.06 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=9.3
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq3_A 10 EKPYECNQCGKA 21 (46)
T ss_dssp CCSSEETTTTEE
T ss_pred CCCeECCCCChh
Confidence 346889999975
No 160
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.54 E-value=10 Score=15.30 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emm_A 10 ERPHKCNECGKS 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeeCCCCChh
Confidence 346899999976
No 161
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=46.49 E-value=9.5 Score=18.06 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=9.9
Q ss_pred ecCCCCCeEEEee
Q 035423 12 QCRECGYRILYKK 24 (35)
Q Consensus 12 rC~~CG~RIlyK~ 24 (35)
-||.|+...|+|+
T Consensus 36 ycp~~~khtlhkE 48 (50)
T 3r8s_1 36 FDPVVRQHVIYKE 48 (50)
T ss_dssp EETTTTEEEEEEC
T ss_pred eCcCCCCEeeEEE
Confidence 3788888888775
No 162
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.49 E-value=7.6 Score=15.82 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2enh_A 11 KPYECDVCRKA 21 (46)
T ss_dssp SSCBCTTTCCB
T ss_pred CCcCCCCcCch
Confidence 46789999976
No 163
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.34 E-value=7.7 Score=15.74 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2emg_A 11 NPFICSECGKV 21 (46)
T ss_dssp CSCBCTTTCCB
T ss_pred CCEECCccCcc
Confidence 45789999975
No 164
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.25 E-value=10 Score=15.36 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2ytg_A 10 EKPFKCGECGKS 21 (46)
T ss_dssp CCSEECTTTCCE
T ss_pred CCCeECCCCCcc
Confidence 346899999976
No 165
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.21 E-value=10 Score=15.40 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2em5_A 10 TKSHQCHECGRG 21 (46)
T ss_dssp SCSEECSSSCCE
T ss_pred CCCeECCcCCCc
Confidence 346899999976
No 166
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.20 E-value=10 Score=15.34 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ene_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp SSSEECSSSCCE
T ss_pred CCCeECCCCCch
Confidence 346899999976
No 167
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.07 E-value=10 Score=15.33 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2ytk_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp SCSEECSSSCCE
T ss_pred CCCEeCCcCCCc
Confidence 346899999976
No 168
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.00 E-value=7.5 Score=15.61 Aligned_cols=11 Identities=36% Similarity=0.918 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 ~~~~C~~C~k~ 21 (44)
T 2eox_A 11 KSYNCNECGKA 21 (44)
T ss_dssp CCEEETTTTEE
T ss_pred CCeECcccCcc
Confidence 46899999975
No 169
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=45.84 E-value=7 Score=16.34 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=9.3
Q ss_pred ceecCCCCCeEE
Q 035423 10 VIQCRECGYRIL 21 (35)
Q Consensus 10 ~irC~~CG~RIl 21 (35)
+-+|+.||..|.
T Consensus 3 ~~~C~~C~k~Vy 14 (31)
T 1zfo_A 3 NPNCARCGKIVY 14 (31)
T ss_dssp CCBCSSSCSBCC
T ss_pred CCcCCccCCEEe
Confidence 458999998853
No 170
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.76 E-value=7.6 Score=15.74 Aligned_cols=12 Identities=25% Similarity=0.775 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (45)
T 2epu_A 10 QKPFECTHCGKS 21 (45)
T ss_dssp CCSEEETTTTEE
T ss_pred CcCccCCCCCCc
Confidence 346899999976
No 171
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=45.60 E-value=10 Score=16.13 Aligned_cols=11 Identities=18% Similarity=0.455 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 29 ~~~~C~~C~~~ 39 (60)
T 2adr_A 29 KPYPCGLCNRA 39 (60)
T ss_dssp CSEECTTTCCE
T ss_pred CCccCCCCCCc
Confidence 46889999975
No 172
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=45.56 E-value=6.4 Score=18.72 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=11.7
Q ss_pred CCCceecCCCCCeEEE
Q 035423 7 PGDVIQCRECGYRILY 22 (35)
Q Consensus 7 ~~~~irC~~CG~RIly 22 (35)
+.+---|..||..|++
T Consensus 14 ~~~YRvC~~CgkPi~l 29 (44)
T 2lo3_A 14 PIQYRVCEKCGKPLAL 29 (44)
T ss_dssp CCCEEECTTTCCEEET
T ss_pred cccchhhcccCCcchH
Confidence 3344569999999875
No 173
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.52 E-value=11 Score=15.28 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=9.2
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2enc_A 11 KPFKCEECGKG 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred CCcCCCCCCCc
Confidence 46899999986
No 174
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=45.49 E-value=9.6 Score=19.04 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=5.6
Q ss_pred ceecCCCCC
Q 035423 10 VIQCRECGY 18 (35)
Q Consensus 10 ~irC~~CG~ 18 (35)
.-+|+.|||
T Consensus 7 ~y~C~vCGy 15 (70)
T 1dx8_A 7 KYECEACGY 15 (70)
T ss_dssp CEEETTTCC
T ss_pred eEEeCCCCE
Confidence 456666665
No 175
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=45.18 E-value=6.6 Score=20.63 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=9.4
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
+.-+|++||..+
T Consensus 34 ~~~~C~yCg~~~ 45 (112)
T 2qgp_A 34 ARGICHYCGEIF 45 (112)
T ss_dssp HHTBCTTTCCBC
T ss_pred cCCcCCCCCCcC
Confidence 346899999875
No 176
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=45.15 E-value=11 Score=23.74 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=10.4
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
.+.++||+||..
T Consensus 276 ~~~v~Cp~cgA~ 287 (320)
T 3mkr_B 276 KPVEKCPLSGAC 287 (320)
T ss_dssp SCCEECTTTCCE
T ss_pred CCCccCCCCCCe
Confidence 567899999986
No 177
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.04 E-value=7.6 Score=15.83 Aligned_cols=11 Identities=27% Similarity=0.779 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eoh_A 11 KPYECKECRKT 21 (46)
T ss_dssp CSCCCSSSCCC
T ss_pred CCcCCCCcCch
Confidence 45789999975
No 178
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=44.96 E-value=8.7 Score=20.24 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..|+||.|+.-
T Consensus 33 m~VkCp~C~~~ 43 (82)
T 3u5c_b 33 LDVKCPGCLNI 43 (82)
T ss_dssp EEEECTTSCSC
T ss_pred EEEECCCCCCe
Confidence 35899999874
No 179
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.93 E-value=8.4 Score=15.67 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.3
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em6_A 10 EKCYKCDVCGKE 21 (46)
T ss_dssp CCCCBCSSSCCB
T ss_pred CCCeECCCCCcc
Confidence 345789999975
No 180
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.92 E-value=6.6 Score=15.97 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.2
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2yti_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp CCTTCCSSSCCC
T ss_pred CcCeECCCCCcc
Confidence 345789999975
No 181
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.88 E-value=7.2 Score=15.56 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (44)
T 2en7_A 11 KPYVCNECGKA 21 (44)
T ss_dssp SSSCCTTTCCC
T ss_pred cCeECCCCCCc
Confidence 45789999975
No 182
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=44.79 E-value=2.1 Score=22.02 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=10.3
Q ss_pred ccCCCCceecCCCCCe
Q 035423 4 TLKPGDVIQCRECGYR 19 (35)
Q Consensus 4 ~lk~~~~irC~~CG~R 19 (35)
|+++...-.||.||.-
T Consensus 20 e~~q~~ky~C~fCgk~ 35 (72)
T 3jyw_9 20 EIQQHARYDCSFCGKK 35 (72)
T ss_dssp HHHHHSCBCCSSCCSS
T ss_pred HHHhccCccCCCCCCc
Confidence 4445556678888854
No 183
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.75 E-value=11 Score=15.22 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eml_A 10 EKPYECSVCGKA 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeeCCCcCCc
Confidence 346899999976
No 184
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.75 E-value=11 Score=15.23 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emh_A 10 ERPYICTVCGKA 21 (46)
T ss_dssp CCSEECTTTCCE
T ss_pred CCCcCCCCCCch
Confidence 346899999976
No 185
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=44.71 E-value=8.2 Score=19.06 Aligned_cols=14 Identities=29% Similarity=0.524 Sum_probs=10.7
Q ss_pred CCceecCCCCCeEE
Q 035423 8 GDVIQCRECGYRIL 21 (35)
Q Consensus 8 ~~~irC~~CG~RIl 21 (35)
-...+|+.|||.=|
T Consensus 31 ~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 31 IRATKCRRCHSTNL 44 (56)
T ss_dssp TTCSSCTTTCCCCE
T ss_pred cccccccCCCCCCC
Confidence 34688999999844
No 186
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=44.44 E-value=7.5 Score=21.61 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=12.8
Q ss_pred ceecCCCCCeEEEeecCC
Q 035423 10 VIQCRECGYRILYKKRTR 27 (35)
Q Consensus 10 ~irC~~CG~RIlyK~R~~ 27 (35)
...||+||+.--.+..-+
T Consensus 99 ~L~Cp~cgr~ypI~~GIP 116 (125)
T 3q87_A 99 SLRCDMCGLIYPIKGSIV 116 (125)
T ss_dssp EEEETTTCCEEEEETTEE
T ss_pred EEECCCCCCEeeccCCcc
Confidence 578999999765554433
No 187
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.43 E-value=11 Score=15.14 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2en8_A 10 EKSHTCDECGKN 21 (46)
T ss_dssp CSSEECTTTCCE
T ss_pred CCCeECCCcCcc
Confidence 346899999976
No 188
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.39 E-value=2.2 Score=22.46 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=11.1
Q ss_pred ccCCCCceecCCCCCe
Q 035423 4 TLKPGDVIQCRECGYR 19 (35)
Q Consensus 4 ~lk~~~~irC~~CG~R 19 (35)
++++...-.||.||.-
T Consensus 29 e~~q~~ky~CpfCGk~ 44 (83)
T 3j21_i 29 EAKMRQKHTCPVCGRK 44 (83)
T ss_dssp HHHHHSCBCCSSSCSS
T ss_pred HHHhhcccCCCCCCCc
Confidence 4455566778888865
No 189
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.14 E-value=8.7 Score=15.63 Aligned_cols=11 Identities=55% Similarity=1.168 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2yth_A 11 KPFQCEECGKR 21 (46)
T ss_dssp SSBCCSSSCCC
T ss_pred cCCCCCCCCcc
Confidence 45889999975
No 190
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=44.09 E-value=5.7 Score=17.49 Aligned_cols=10 Identities=30% Similarity=0.979 Sum_probs=7.9
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
..+|..||++
T Consensus 21 ~l~C~aCG~~ 30 (36)
T 1k81_A 21 LLKCMACGAI 30 (36)
T ss_dssp EEEEETTTEE
T ss_pred EEEhhcCCCc
Confidence 4678899886
No 191
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=44.07 E-value=11 Score=15.79 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 28 ~~~~C~~C~~~ 38 (57)
T 1bbo_A 28 RPYHCTYCNFS 38 (57)
T ss_dssp CCEECSSSSCE
T ss_pred CCccCCCCCch
Confidence 46889999975
No 192
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.02 E-value=11 Score=15.22 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2em8_A 10 EKPYKCVECGKG 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeECcccCch
Confidence 346899999976
No 193
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=44.00 E-value=11 Score=15.14 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=9.4
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2el4_A 10 VKPYGCSQCAKT 21 (46)
T ss_dssp CCSEECSSSSCE
T ss_pred CCceECCCCCch
Confidence 346899999976
No 194
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=43.98 E-value=12 Score=23.72 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=10.7
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
.+.++||+||.+
T Consensus 285 ~~~v~Cp~cgA~ 296 (325)
T 3mv2_A 285 TPSVSDPLTGSK 296 (325)
T ss_dssp SCEEECTTTCCE
T ss_pred CCCccCCCCCCe
Confidence 678999999987
No 195
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.82 E-value=12 Score=15.15 Aligned_cols=12 Identities=50% Similarity=0.889 Sum_probs=9.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2yso_A 10 EKSHQCRECGEI 21 (46)
T ss_dssp CCCEECTTTCCE
T ss_pred CCCEEccccChh
Confidence 346899999986
No 196
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=43.77 E-value=8.9 Score=20.15 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=8.2
Q ss_pred CCCceecCCCCC
Q 035423 7 PGDVIQCRECGY 18 (35)
Q Consensus 7 ~~~~irC~~CG~ 18 (35)
....-+|+.|||
T Consensus 32 ~m~~y~C~vCGy 43 (87)
T 1s24_A 32 AYLKWICITCGH 43 (87)
T ss_dssp CCCEEEETTTTE
T ss_pred CCceEECCCCCe
Confidence 345677888886
No 197
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=43.74 E-value=7.6 Score=20.98 Aligned_cols=10 Identities=40% Similarity=1.012 Sum_probs=8.2
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
..+||.||--
T Consensus 51 ~FkCP~CgEE 60 (95)
T 2k5c_A 51 VFKCPVCGEE 60 (95)
T ss_dssp EEECTTTCCE
T ss_pred hhcCCCccHH
Confidence 4689999976
No 198
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.73 E-value=12 Score=15.19 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eoo_A 10 ERPYGCNECGKN 21 (46)
T ss_dssp CCCEECSSSCCE
T ss_pred CCCEEccccCcc
Confidence 346899999976
No 199
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.72 E-value=8 Score=15.69 Aligned_cols=11 Identities=36% Similarity=0.918 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eq1_A 11 KPYKCNECGKA 21 (46)
T ss_dssp CCCCCTTTTCC
T ss_pred CCeECCcCChh
Confidence 45789999975
No 200
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.63 E-value=9 Score=15.52 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=9.3
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytn_A 10 KKPYKCNECGKV 21 (46)
T ss_dssp CSSCBCTTTCCB
T ss_pred CcCeECCCCCCe
Confidence 346789999975
No 201
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=43.60 E-value=11 Score=16.70 Aligned_cols=10 Identities=20% Similarity=0.617 Sum_probs=5.8
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 39 ~~~C~~C~k~ 48 (62)
T 1vd4_A 39 TFRCTFCHTE 48 (62)
T ss_dssp EEBCSSSCCB
T ss_pred CEECCCCCCc
Confidence 4556666654
No 202
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.44 E-value=9.2 Score=15.42 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 ~~~~C~~C~k~ 21 (46)
T 2eov_A 11 KPYKCSDCGKS 21 (46)
T ss_dssp CSCBCSSSCCB
T ss_pred CCccCCccChh
Confidence 46889999975
No 203
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=43.28 E-value=17 Score=15.69 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=8.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 38 ~~~~~C~~C~k~ 49 (66)
T 2drp_A 38 VKVYPCPFCFKE 49 (66)
T ss_dssp CCCEECTTTCCE
T ss_pred CcCeECCCCCCc
Confidence 346788888865
No 204
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.06 E-value=12 Score=15.07 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ep2_A 10 EKPYECSICGKS 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CcCcCCCCCCcc
Confidence 346899999976
No 205
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.88 E-value=9.3 Score=15.41 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (47)
T 2epx_A 11 KPYECIECGKA 21 (47)
T ss_dssp CSBCCSSSCCC
T ss_pred CCEECCccCch
Confidence 46889999975
No 206
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.65 E-value=12 Score=15.04 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=9.1
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ytd_A 11 KPYKCSECGKA 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred cCeECCCCCCe
Confidence 46899999976
No 207
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=42.42 E-value=9.9 Score=19.96 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=8.3
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..|+||.|+.-
T Consensus 31 m~VkCp~C~n~ 41 (81)
T 2xzm_6 31 MDVKCAQCQNI 41 (81)
T ss_dssp EEEECSSSCCE
T ss_pred EEeECCCCCCe
Confidence 35899999864
No 208
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.31 E-value=9.7 Score=15.47 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2en9_A 11 KLFKCNECKKT 21 (46)
T ss_dssp CCCBCTTTCCB
T ss_pred CCEECCccCcc
Confidence 45789999975
No 209
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=42.30 E-value=12 Score=15.33 Aligned_cols=12 Identities=42% Similarity=0.972 Sum_probs=8.9
Q ss_pred CCCceecCCCCC
Q 035423 7 PGDVIQCRECGY 18 (35)
Q Consensus 7 ~~~~irC~~CG~ 18 (35)
+...+.|-+||-
T Consensus 3 ~r~~~~C~nCgk 14 (29)
T 1nc8_A 3 QRKVIRCWNCGK 14 (29)
T ss_dssp CCCCCBCTTTSC
T ss_pred CCCCCEEEECCc
Confidence 345688999985
No 210
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.30 E-value=18 Score=15.89 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=6.5
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|++||..
T Consensus 9 ~~~~C~~C~k~ 19 (66)
T 2eod_A 9 RTQPCTYCTKE 19 (66)
T ss_dssp CEEECSSSCCE
T ss_pred CCeeccccCCc
Confidence 34566666655
No 211
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.25 E-value=8.2 Score=15.65 Aligned_cols=12 Identities=50% Similarity=1.057 Sum_probs=9.2
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq2_A 10 GKPYQCNECGKA 21 (46)
T ss_dssp SCSSSCCSSCCC
T ss_pred CCCeECCCCCcc
Confidence 345789999975
No 212
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=41.98 E-value=13 Score=21.94 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.2
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
.++|+.|++++
T Consensus 193 g~~C~~C~~~~ 203 (238)
T 3nw0_A 193 GQSCETCGIRM 203 (238)
T ss_dssp CEECSSSCCEE
T ss_pred CcccCccChHH
Confidence 57888888764
No 213
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=41.81 E-value=9.9 Score=15.43 Aligned_cols=11 Identities=36% Similarity=0.887 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ely_A 11 KPFKCVECGKG 21 (46)
T ss_dssp CSBCCSSSCCC
T ss_pred CCcccCccCcc
Confidence 45789999975
No 214
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.71 E-value=10 Score=15.30 Aligned_cols=11 Identities=36% Similarity=0.903 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 9 k~~~C~~C~k~ 19 (43)
T 2yrm_A 9 GAFFCNECDCR 19 (43)
T ss_dssp CCBCCSSSCCC
T ss_pred CCEECCCCCCe
Confidence 46789999976
No 215
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=41.71 E-value=12 Score=17.92 Aligned_cols=7 Identities=57% Similarity=1.678 Sum_probs=3.3
Q ss_pred ecCCCCC
Q 035423 12 QCRECGY 18 (35)
Q Consensus 12 rC~~CG~ 18 (35)
+|+.|||
T Consensus 5 ~C~vCGy 11 (54)
T 4rxn_A 5 TCTVCGY 11 (54)
T ss_dssp EETTTCC
T ss_pred ECCCCCe
Confidence 4444444
No 216
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.57 E-value=9.2 Score=15.54 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2emz_A 11 RPFKCNECGKG 21 (46)
T ss_dssp CSCCCSSSCCC
T ss_pred CCeECCCCCcc
Confidence 45789999975
No 217
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.56 E-value=10 Score=15.39 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ytq_A 11 KPYGCSECGKA 21 (46)
T ss_dssp CSCBCSSSCCB
T ss_pred CCcCCCccChh
Confidence 45789999976
No 218
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=41.35 E-value=13 Score=15.05 Aligned_cols=11 Identities=18% Similarity=0.685 Sum_probs=9.1
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2el6_A 11 NPYKCSQCEKS 21 (46)
T ss_dssp CSEECSSSSCE
T ss_pred CCeECCCCCcc
Confidence 46899999976
No 219
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=41.05 E-value=11 Score=18.20 Aligned_cols=12 Identities=33% Similarity=0.360 Sum_probs=9.4
Q ss_pred CCCceecCCCCC
Q 035423 7 PGDVIQCRECGY 18 (35)
Q Consensus 7 ~~~~irC~~CG~ 18 (35)
..+..+|.+||-
T Consensus 20 ~~~~~~C~~Cge 31 (56)
T 1u6p_A 20 QLDRDQCAYCKE 31 (56)
T ss_dssp TCCTTBCSSSCC
T ss_pred CCCCCcceeCCC
Confidence 456789999985
No 220
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.91 E-value=9.2 Score=15.42 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eq4_A 11 KLYNCKECGKS 21 (46)
T ss_dssp CCCCBTTTTBC
T ss_pred CCeECCCCCCc
Confidence 45789999975
No 221
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=40.79 E-value=29 Score=22.47 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=22.1
Q ss_pred ccccCCCCceecCCC--CCeEEEeecCCceEEEEe
Q 035423 2 ENTLKPGDVIQCREC--GYRILYKKRTRRIVQYEA 34 (35)
Q Consensus 2 ~~~lk~~~~irC~~C--G~RIlyK~R~~~~~~~~A 34 (35)
+|.....-.--|++| |+.|+...+..+++.++.
T Consensus 2 ~~~~~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g 36 (723)
T 2nap_A 2 DNRPEKWVKGVCRYCGTGCGVLVGVKDGKAVAIQG 36 (723)
T ss_dssp --CCSEEEEEECSSCTTCCEEEEEEETTEEEEEEE
T ss_pred CCccceEEeEECCCCCCCCcEEEEEECCEEEEEEe
Confidence 344444445679999 578888888888777764
No 222
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.59 E-value=11 Score=15.31 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=9.3
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2elz_A 10 EKPYKCEDCGKG 21 (46)
T ss_dssp CSSCBCSSSCCB
T ss_pred CCCeeCcccCch
Confidence 346889999975
No 223
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.58 E-value=9.8 Score=15.39 Aligned_cols=11 Identities=27% Similarity=0.773 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 ~~~~C~~C~k~ 21 (46)
T 2eoq_A 11 KPFKCDICGKS 21 (46)
T ss_dssp CSCCCSSSCCC
T ss_pred CCcCCCcCCch
Confidence 46789999975
No 224
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=40.52 E-value=13 Score=16.38 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=7.0
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 49 ~~~C~~C~~~ 58 (73)
T 1f2i_G 49 PFQCRICMRN 58 (73)
T ss_dssp CEECTTTCCE
T ss_pred CeECCCCCch
Confidence 4678888764
No 225
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.48 E-value=8.5 Score=19.31 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=7.8
Q ss_pred eecCCCCCeE
Q 035423 11 IQCRECGYRI 20 (35)
Q Consensus 11 irC~~CG~RI 20 (35)
-.|.+||+.|
T Consensus 5 ~~C~Fcg~~I 14 (66)
T 3j21_V 5 NVCSYCGKPF 14 (66)
T ss_dssp CBCTTTCSBC
T ss_pred eEecCcCCcc
Confidence 4699998875
No 226
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=40.44 E-value=13 Score=21.07 Aligned_cols=16 Identities=25% Similarity=0.746 Sum_probs=13.0
Q ss_pred eecCCCCCeEEEeecC
Q 035423 11 IQCRECGYRILYKKRT 26 (35)
Q Consensus 11 irC~~CG~RIlyK~R~ 26 (35)
.-|+.||..+.+....
T Consensus 99 ~FC~~CGs~l~~~~~~ 114 (196)
T 1x6m_A 99 HRCRDCGVHMYGRIEN 114 (196)
T ss_dssp EEETTTCCEEEEEECC
T ss_pred EECCCCCCcCCccccc
Confidence 4699999999887653
No 227
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.40 E-value=9.3 Score=15.40 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=9.2
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ep1_A 10 EKPYECSDCGKS 21 (46)
T ss_dssp CCSSCCSSSCCC
T ss_pred CCCcCCCCCCch
Confidence 345789999975
No 228
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=40.35 E-value=11 Score=20.00 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=8.2
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
.|+||.|+.-
T Consensus 36 ~VkCp~C~~~ 45 (86)
T 3iz6_X 36 DVKCQGCFNI 45 (86)
T ss_dssp EEECTTTCCE
T ss_pred EEECCCCCCe
Confidence 4999999874
No 229
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=40.33 E-value=12 Score=22.83 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=10.6
Q ss_pred CceecCCCCCeEEE
Q 035423 9 DVIQCRECGYRILY 22 (35)
Q Consensus 9 ~~irC~~CG~RIly 22 (35)
+.+.|+.||++=.|
T Consensus 267 ~~~~C~~C~~~~~~ 280 (309)
T 1pqv_S 267 DRFTCGKCKEKKVS 280 (309)
T ss_pred ccccCCCCCCCeeE
Confidence 35799999987543
No 230
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.06 E-value=10 Score=15.48 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eom_A 11 RGHRCSDCGKF 21 (46)
T ss_dssp SSCCCSSSCCC
T ss_pred CCcCCCCCCCe
Confidence 45789999975
No 231
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.66 E-value=10 Score=15.23 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=9.2
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (44)
T 2eou_A 10 KTTSECQECGKI 21 (44)
T ss_dssp SCCCCCTTTCCC
T ss_pred CcCeECCCCCcc
Confidence 345789999975
No 232
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.61 E-value=15 Score=14.79 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=9.5
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2ep0_A 10 EKPYKCDVCHKS 21 (46)
T ss_dssp CCSEECSSSCCE
T ss_pred CCCeeCcccCcc
Confidence 346899999976
No 233
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=39.55 E-value=18 Score=19.53 Aligned_cols=15 Identities=27% Similarity=0.864 Sum_probs=12.0
Q ss_pred CCCCceecCCCCCeE
Q 035423 6 KPGDVIQCRECGYRI 20 (35)
Q Consensus 6 k~~~~irC~~CG~RI 20 (35)
+......|++||--|
T Consensus 66 ~~s~~~~C~nC~R~v 80 (99)
T 3mhs_C 66 ESSQYIHCENCGRDV 80 (99)
T ss_dssp TTSCEEECTTTCCEE
T ss_pred cCCCeEECCCCCCCc
Confidence 566778999999765
No 234
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.53 E-value=11 Score=15.24 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.4
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ysp_A 10 EKPYKCEKCGKG 21 (46)
T ss_dssp CCSEEETTTTEE
T ss_pred CCCeECCCCCCc
Confidence 346899999975
No 235
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.40 E-value=8.9 Score=15.46 Aligned_cols=11 Identities=36% Similarity=0.918 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ytr_A 11 KPYKCNECGKA 21 (46)
T ss_dssp CTTCCTTTCCC
T ss_pred cCcCCCCCCCc
Confidence 45789999975
No 236
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.32 E-value=12 Score=15.09 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=9.2
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2eop_A 10 EKPHECRECGKS 21 (46)
T ss_dssp CCSCBCTTTCCB
T ss_pred CCCeeCCCCCch
Confidence 346789999975
No 237
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.27 E-value=9 Score=15.64 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=8.9
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ytm_A 11 KPYKCMECGKA 21 (46)
T ss_dssp CSSSBTTTTBC
T ss_pred CCcCCCCCCch
Confidence 45789999975
No 238
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}
Probab=39.20 E-value=14 Score=19.65 Aligned_cols=10 Identities=20% Similarity=-0.031 Sum_probs=9.1
Q ss_pred ecCCCCCeEE
Q 035423 12 QCRECGYRIL 21 (35)
Q Consensus 12 rC~~CG~RIl 21 (35)
|||+|+.|||
T Consensus 60 RGP~~~griI 69 (95)
T 4avr_A 60 RGPFRRGRII 69 (95)
T ss_dssp CCCCSTTEEE
T ss_pred CCCCCCCCEE
Confidence 8999999987
No 239
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=39.17 E-value=9.6 Score=18.82 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=6.2
Q ss_pred eecCCCCCe
Q 035423 11 IQCRECGYR 19 (35)
Q Consensus 11 irC~~CG~R 19 (35)
-.||+||..
T Consensus 19 ~~CP~CG~~ 27 (60)
T 2apo_B 19 EICPKCGEK 27 (60)
T ss_dssp SBCSSSCSB
T ss_pred ccCcCCCCc
Confidence 358888854
No 240
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.10 E-value=11 Score=15.16 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=9.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2epz_A 11 KPFDCIDCGKA 21 (46)
T ss_dssp CSBCCTTTCCC
T ss_pred CCeECCCCCce
Confidence 46889999975
No 241
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.98 E-value=8.8 Score=18.40 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=8.3
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
.-+||.|+..|
T Consensus 6 ~k~CP~C~~~I 16 (60)
T 1wd2_A 6 TKECPKCHVTI 16 (60)
T ss_dssp CCCCTTTCCCC
T ss_pred ceECcCCCCee
Confidence 35799998765
No 242
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=38.46 E-value=3.1 Score=22.27 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=10.2
Q ss_pred ccCCCCceecCCCCCe
Q 035423 4 TLKPGDVIQCRECGYR 19 (35)
Q Consensus 4 ~lk~~~~irC~~CG~R 19 (35)
++++...-.||.||.-
T Consensus 30 e~~q~~ky~CpfCgk~ 45 (92)
T 3iz5_m 30 EVSQHSKYFCEFCGKF 45 (92)
T ss_dssp HHHHHSCBCCTTTCSS
T ss_pred HHHHhccccCcccCCC
Confidence 3444556678888865
No 243
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=38.12 E-value=12 Score=15.10 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=9.2
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emk_A 10 EKPYECKECGKA 21 (46)
T ss_dssp SCSCBCSSSCCB
T ss_pred CCceECCCCCch
Confidence 345789999975
No 244
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.06 E-value=12 Score=15.11 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=9.3
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2en6_A 10 EKPYGCNECGKT 21 (46)
T ss_dssp SCCEEETTTTEE
T ss_pred CcCeECCCCCcc
Confidence 346899999975
No 245
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=38.00 E-value=8.3 Score=23.82 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=7.1
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
-++|++||..
T Consensus 222 R~~C~~Cg~~ 231 (309)
T 2fiy_A 222 RIKCSHCEES 231 (309)
T ss_dssp TTSCSSSCCC
T ss_pred CcCCcCCCCC
Confidence 4678888863
No 246
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.97 E-value=15 Score=16.28 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=7.3
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 41 ~~~~C~~C~~~ 51 (72)
T 1x6e_A 41 KPYKCLECGKA 51 (72)
T ss_dssp CCEECSSSCCE
T ss_pred CCeECCCCCcc
Confidence 35677777764
No 247
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=37.90 E-value=11 Score=21.91 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=10.9
Q ss_pred eecCCCCCeEEEee
Q 035423 11 IQCRECGYRILYKK 24 (35)
Q Consensus 11 irC~~CG~RIlyK~ 24 (35)
--||.||.+++.-.
T Consensus 114 ~~Cp~Cg~g~fma~ 127 (189)
T 2xzm_9 114 KGCPKCGPGIFMAK 127 (189)
T ss_dssp EECSTTCSSCEEEE
T ss_pred ccCCccCCCccccC
Confidence 46999999977654
No 248
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=37.82 E-value=11 Score=15.16 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2em0_A 11 KTWKCRECDMC 21 (46)
T ss_dssp CCCCCSSSCCC
T ss_pred cCeECCCCCcc
Confidence 45789999975
No 249
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=37.70 E-value=13 Score=21.48 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=9.4
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..++||+||..
T Consensus 184 ~~m~cp~cg~~ 194 (209)
T 2nn6_I 184 CEMQCPKTHTK 194 (209)
T ss_dssp TEEECTTTTCC
T ss_pred CEEECCCCCCE
Confidence 57999999975
No 250
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=37.67 E-value=38 Score=17.47 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=13.6
Q ss_pred CCeEEEeecCCceEEEEe
Q 035423 17 GYRILYKKRTRRIVQYEA 34 (35)
Q Consensus 17 G~RIlyK~R~~~~~~~~A 34 (35)
+|||+|..-...+.-+.+
T Consensus 75 ~yRivy~i~d~~i~Il~~ 92 (96)
T 3oei_C 75 EHRLVYRAGDDEVTMLKA 92 (96)
T ss_dssp SCEEEEEECSSEEEEEES
T ss_pred CEEEEEEEECCEEEEEEe
Confidence 489999998877665554
No 251
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=37.61 E-value=3.8 Score=22.40 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=11.5
Q ss_pred ccCCCCceecCCCCCe
Q 035423 4 TLKPGDVIQCRECGYR 19 (35)
Q Consensus 4 ~lk~~~~irC~~CG~R 19 (35)
+++....-.||.||.-
T Consensus 30 E~~q~aky~CpfCgk~ 45 (103)
T 4a17_Y 30 EITQHAKYGCPFCGKV 45 (103)
T ss_dssp HHHHHSCEECTTTCCE
T ss_pred HHHhhcCCCCCCCCCc
Confidence 4455667789999865
No 252
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=37.41 E-value=28 Score=17.25 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=11.1
Q ss_pred CCCceecCCCCCeEEEe
Q 035423 7 PGDVIQCRECGYRILYK 23 (35)
Q Consensus 7 ~~~~irC~~CG~RIlyK 23 (35)
..+.+.||.|+...-|-
T Consensus 5 LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCBCTTTCCBEEEE
T ss_pred HhhheECCCCCCcCEEe
Confidence 45566777777776554
No 253
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=37.33 E-value=20 Score=17.50 Aligned_cols=14 Identities=14% Similarity=0.667 Sum_probs=10.2
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
...+.+|..||+..
T Consensus 46 ~~qG~kC~~C~~~c 59 (72)
T 2fnf_X 46 LRQALRCANCKFTC 59 (72)
T ss_dssp SSCCEECTTSSCEE
T ss_pred HhCcCccCCCCCee
Confidence 45678888888763
No 254
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=37.23 E-value=17 Score=20.24 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=10.3
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
..+|+|.+||.-+
T Consensus 18 v~~V~C~nCgr~v 30 (119)
T 3u5c_a 18 VKPVRCVNCSKSI 30 (119)
T ss_dssp CCEEECTTTCCEE
T ss_pred CccEeeccccccc
Confidence 4579999999753
No 255
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=37.17 E-value=20 Score=21.55 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=10.3
Q ss_pred CceecCCCCC---eEEE
Q 035423 9 DVIQCRECGY---RILY 22 (35)
Q Consensus 9 ~~irC~~CG~---RIly 22 (35)
....||+||. .|++
T Consensus 20 ~~~~CPECGs~~t~IV~ 36 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVE 36 (197)
T ss_dssp CCCCCTTTCCSSCCEEE
T ss_pred cCeECcCCCCcCCeEEE
Confidence 3458999998 5665
No 256
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.14 E-value=12 Score=15.04 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=9.3
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2en1_A 10 EKPFKCEECGKR 21 (46)
T ss_dssp CCSEEETTTTEE
T ss_pred CCCeeCCCCCcc
Confidence 346899999975
No 257
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=37.08 E-value=32 Score=16.25 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=12.2
Q ss_pred cCCCCceecCCCCCeEEEe
Q 035423 5 LKPGDVIQCRECGYRILYK 23 (35)
Q Consensus 5 lk~~~~irC~~CG~RIlyK 23 (35)
.+..+-..||.|....-|.
T Consensus 5 ~~lL~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEER 23 (56)
T ss_dssp CSCTTSCCCSSSCSCEEEE
T ss_pred HHHHhheeCCCCCCcceec
Confidence 3445667788887776554
No 258
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=37.03 E-value=19 Score=18.84 Aligned_cols=13 Identities=0% Similarity=0.107 Sum_probs=10.8
Q ss_pred ecCCCCCeEEEee
Q 035423 12 QCRECGYRILYKK 24 (35)
Q Consensus 12 rC~~CG~RIlyK~ 24 (35)
-||.|....|+|+
T Consensus 67 YcP~crKHtlHkE 79 (82)
T 1nkw_1 67 YDPVAKKHVVFRE 79 (82)
T ss_pred cCCCCCCeeeEEe
Confidence 3888988888887
No 259
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=36.85 E-value=28 Score=20.76 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=14.6
Q ss_pred ceecCCCCCeEEEeecCCceEE
Q 035423 10 VIQCRECGYRILYKKRTRRIVQ 31 (35)
Q Consensus 10 ~irC~~CG~RIlyK~R~~~~~~ 31 (35)
.--|+.||..|.-..-..+...
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~ 266 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTH 266 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEE
T ss_pred cCCCCCCCCeEEEEEECCCCeE
Confidence 3579999999876554444433
No 260
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=36.70 E-value=14 Score=16.64 Aligned_cols=12 Identities=33% Similarity=0.360 Sum_probs=9.3
Q ss_pred CCCceecCCCCC
Q 035423 7 PGDVIQCRECGY 18 (35)
Q Consensus 7 ~~~~irC~~CG~ 18 (35)
..+.+.|-+||-
T Consensus 7 ~~~~~~C~~Cgk 18 (40)
T 1a6b_B 7 QLDRDQCAYCKE 18 (40)
T ss_dssp SCCSSSCSSSCC
T ss_pred CCCCCeeeECCC
Confidence 456789999984
No 261
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=36.51 E-value=3.3 Score=22.21 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=9.9
Q ss_pred ccCCCCceecCCCCCe
Q 035423 4 TLKPGDVIQCRECGYR 19 (35)
Q Consensus 4 ~lk~~~~irC~~CG~R 19 (35)
++++...-.||.||.-
T Consensus 30 e~~q~~ky~CpfCgk~ 45 (92)
T 3izc_m 30 EIQQHARYDCSFCGKK 45 (92)
T ss_dssp HHHHHSCCCCSSSCSS
T ss_pred HHHHhcCCcCCCCCCc
Confidence 3444556678888854
No 262
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=36.30 E-value=23 Score=17.46 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=10.6
Q ss_pred CCCceecCCCCCeEEEe
Q 035423 7 PGDVIQCRECGYRILYK 23 (35)
Q Consensus 7 ~~~~irC~~CG~RIlyK 23 (35)
..+.+.||.|+..+-|-
T Consensus 5 LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYH 21 (68)
T ss_dssp SSCCCBCSSSCCBCEEE
T ss_pred HhhheECCCCCCcCeEe
Confidence 34566777777665553
No 263
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=36.22 E-value=14 Score=21.36 Aligned_cols=10 Identities=20% Similarity=-0.021 Sum_probs=8.1
Q ss_pred eecCCCCCeE
Q 035423 11 IQCRECGYRI 20 (35)
Q Consensus 11 irC~~CG~RI 20 (35)
-.|-+||+.|
T Consensus 4 ~~CsFcg~~I 13 (155)
T 3izc_Z 4 EIDSFSGAKI 13 (155)
T ss_dssp EECTTTCSEE
T ss_pred eEecCcCCcc
Confidence 4699998886
No 264
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=35.99 E-value=11 Score=18.90 Aligned_cols=10 Identities=40% Similarity=0.923 Sum_probs=7.8
Q ss_pred eecCCCCCeE
Q 035423 11 IQCRECGYRI 20 (35)
Q Consensus 11 irC~~CG~RI 20 (35)
-.|-.||+.|
T Consensus 4 ~~C~Fcg~~I 13 (66)
T 1vq8_U 4 RECDYCGTDI 13 (66)
T ss_dssp CBCTTTCCBC
T ss_pred eEecCcCCcc
Confidence 4689998875
No 265
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=35.92 E-value=8.5 Score=25.87 Aligned_cols=17 Identities=24% Similarity=0.003 Sum_probs=3.8
Q ss_pred ceecCCCCCeEEEeecC
Q 035423 10 VIQCRECGYRILYKKRT 26 (35)
Q Consensus 10 ~irC~~CG~RIlyK~R~ 26 (35)
...||.||..++.++-.
T Consensus 616 ~~~CP~Cg~~l~~~~~~ 632 (659)
T 1i7d_A 616 GIVAPGSGGSADKKKAA 632 (659)
T ss_dssp TCCCC------------
T ss_pred CCCCCCCCCeeEEecCc
Confidence 45799999998765433
No 266
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=35.89 E-value=21 Score=15.57 Aligned_cols=12 Identities=25% Similarity=0.933 Sum_probs=9.1
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+.+|..|++.
T Consensus 26 ~qg~~C~~C~~~ 37 (50)
T 1ptq_A 26 KQGLKCEDCGMN 37 (50)
T ss_dssp SCEEEETTTCCE
T ss_pred CccCEeCCCCCe
Confidence 367888888875
No 267
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=35.85 E-value=13 Score=20.33 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=9.3
Q ss_pred ceecCCCCCeEEE
Q 035423 10 VIQCRECGYRILY 22 (35)
Q Consensus 10 ~irC~~CG~RIly 22 (35)
.-||+.||.-.++
T Consensus 47 ~~rC~~CG~~~~P 59 (145)
T 3irb_A 47 GSKCSKCGRIFVP 59 (145)
T ss_dssp EEECTTTCCEEES
T ss_pred EEEeCCCCcEEcC
Confidence 4688888876554
No 268
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=35.77 E-value=14 Score=21.42 Aligned_cols=10 Identities=50% Similarity=1.002 Sum_probs=8.2
Q ss_pred eecCCCCCeE
Q 035423 11 IQCRECGYRI 20 (35)
Q Consensus 11 irC~~CG~RI 20 (35)
-.|-+||+.|
T Consensus 6 ~~CsFcg~~I 15 (158)
T 4a17_T 6 GTCSFCEYRI 15 (158)
T ss_dssp EECTTTCCEE
T ss_pred EEecCcCCcc
Confidence 4699998886
No 269
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.64 E-value=11 Score=15.14 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=9.2
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2eoe_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp CCSSEETTTTEE
T ss_pred CCCeECCCcChh
Confidence 346889999975
No 270
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=35.33 E-value=26 Score=14.25 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=8.4
Q ss_pred CCCceecCCCCCe
Q 035423 7 PGDVIQCRECGYR 19 (35)
Q Consensus 7 ~~~~irC~~CG~R 19 (35)
...+..|+.||..
T Consensus 9 ~~k~~~C~~C~k~ 21 (48)
T 2epr_A 9 TRKQVACEICGKI 21 (48)
T ss_dssp CCCSEEETTTTEE
T ss_pred CCcCeeCCCCCcc
Confidence 3445778888764
No 271
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.22 E-value=18 Score=16.19 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=8.2
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 37 ~~~~C~~C~k~ 47 (78)
T 2d9h_A 37 LRFPCEFCGKR 47 (78)
T ss_dssp CCEECTTTCCE
T ss_pred cccCCCCCCch
Confidence 45788888865
No 272
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.13 E-value=17 Score=16.24 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=8.0
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 44 ~~~~C~~C~~~ 54 (77)
T 2ct1_A 44 AKFHCPHCDTV 54 (77)
T ss_dssp SSEECSSSSCE
T ss_pred CccCCCCCCCc
Confidence 35788888865
No 273
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=35.11 E-value=21 Score=16.99 Aligned_cols=17 Identities=18% Similarity=0.694 Sum_probs=11.5
Q ss_pred ccccCCCCceecCCCCCe
Q 035423 2 ENTLKPGDVIQCRECGYR 19 (35)
Q Consensus 2 ~~~lk~~~~irC~~CG~R 19 (35)
+....+...|+| .||..
T Consensus 2 ~d~~~~e~~v~C-~C~~~ 18 (68)
T 2rsd_A 2 SDSFQPEAKVRC-ICSST 18 (68)
T ss_dssp CSCCCSSCEECC-TTCCC
T ss_pred CCCcCCCCCEEe-ECCCC
Confidence 445667778888 58753
No 274
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=34.74 E-value=24 Score=16.45 Aligned_cols=13 Identities=15% Similarity=0.746 Sum_probs=8.7
Q ss_pred CCCceecCCCCCe
Q 035423 7 PGDVIQCRECGYR 19 (35)
Q Consensus 7 ~~~~irC~~CG~R 19 (35)
...+.+|..||+.
T Consensus 33 ~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 33 LRQALRCANCKFT 45 (59)
T ss_dssp CSCCEECTTTSCE
T ss_pred hhCccEeCCCCCe
Confidence 3456778877765
No 275
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.48 E-value=12 Score=15.15 Aligned_cols=12 Identities=42% Similarity=0.850 Sum_probs=9.2
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytt_A 10 EKPYQCSECGKS 21 (46)
T ss_dssp CCTTCCSSSCCC
T ss_pred CCCeeCCCCCcc
Confidence 345789999975
No 276
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=34.25 E-value=17 Score=22.29 Aligned_cols=14 Identities=36% Similarity=0.909 Sum_probs=9.5
Q ss_pred ceecCCCCC---eEEEe
Q 035423 10 VIQCRECGY---RILYK 23 (35)
Q Consensus 10 ~irC~~CG~---RIlyK 23 (35)
...||+||. .|++-
T Consensus 21 ~~~Cp~C~~~~~~lv~D 37 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVER 37 (345)
T ss_dssp -CCCSSCCCSSCCEEEE
T ss_pred CCcCCCCCCCCCceeEE
Confidence 458999995 55553
No 277
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.23 E-value=17 Score=19.11 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=10.7
Q ss_pred CCCCceecCCCCCeE
Q 035423 6 KPGDVIQCRECGYRI 20 (35)
Q Consensus 6 k~~~~irC~~CG~RI 20 (35)
+....-+|..||.++
T Consensus 29 K~~~~pkC~~cg~~L 43 (89)
T 3j21_d 29 KKPKIAHCAMCGRPL 43 (89)
T ss_dssp CCCCCCBCSSSCCBC
T ss_pred ccCCCCCCCCCCCcc
Confidence 345556899999763
No 278
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=34.15 E-value=33 Score=20.34 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=14.3
Q ss_pred eecCCCCCeEEEeecCCceEEE
Q 035423 11 IQCRECGYRILYKKRTRRIVQY 32 (35)
Q Consensus 11 irC~~CG~RIlyK~R~~~~~~~ 32 (35)
--|+.||..|.-.+=..+...|
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~ 264 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHF 264 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEE
T ss_pred CCCCCCCCEeeEEEECCCceEE
Confidence 4599999998755444444433
No 279
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=34.14 E-value=7.4 Score=22.14 Aligned_cols=14 Identities=64% Similarity=1.322 Sum_probs=11.6
Q ss_pred CCCCceecCCCCCe
Q 035423 6 KPGDVIQCRECGYR 19 (35)
Q Consensus 6 k~~~~irC~~CG~R 19 (35)
.++..|.|.+||..
T Consensus 65 ~~~g~I~C~~Cgq~ 78 (145)
T 3eqt_A 65 KPGGVISCRNCGEV 78 (145)
T ss_dssp EEEEEEEETTTCCE
T ss_pred cCCcEEEchhhChh
Confidence 45678999999986
No 280
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=34.04 E-value=13 Score=18.12 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=6.3
Q ss_pred ecCCCCC
Q 035423 12 QCRECGY 18 (35)
Q Consensus 12 rC~~CG~ 18 (35)
.||+||.
T Consensus 15 ~CpnC~~ 21 (59)
T 3lpe_B 15 ICPICHS 21 (59)
T ss_dssp BCTTTCC
T ss_pred CCCCCCC
Confidence 6999997
No 281
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.01 E-value=27 Score=15.28 Aligned_cols=10 Identities=40% Similarity=1.046 Sum_probs=5.5
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 9 ~~~C~~C~k~ 18 (70)
T 1x5w_A 9 PEKCSECSYS 18 (70)
T ss_dssp SEECSSSSCE
T ss_pred CeECCCCCcc
Confidence 4556666543
No 282
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.98 E-value=35 Score=20.29 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=14.5
Q ss_pred eecCCCCCeEEEeecCCceEEE
Q 035423 11 IQCRECGYRILYKKRTRRIVQY 32 (35)
Q Consensus 11 irC~~CG~RIlyK~R~~~~~~~ 32 (35)
--|+.||..|.-.+=..+...|
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~ 257 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHF 257 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEE
T ss_pred CCCCCCCCEeeEEEECCCceEE
Confidence 4599999998755544444433
No 283
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=33.88 E-value=13 Score=21.22 Aligned_cols=9 Identities=44% Similarity=1.113 Sum_probs=7.5
Q ss_pred ceecCCCCC
Q 035423 10 VIQCRECGY 18 (35)
Q Consensus 10 ~irC~~CG~ 18 (35)
...||.||.
T Consensus 14 ~~~CP~Cg~ 22 (255)
T 1nui_A 14 HIPCDNCGS 22 (255)
T ss_dssp EECCSSSCC
T ss_pred CCcCCCCCC
Confidence 568999987
No 284
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=33.86 E-value=34 Score=20.20 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=14.2
Q ss_pred eecCCCCCeEEEeecCCceEEE
Q 035423 11 IQCRECGYRILYKKRTRRIVQY 32 (35)
Q Consensus 11 irC~~CG~RIlyK~R~~~~~~~ 32 (35)
--|+.||..|.-..=..+...|
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~ 256 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYW 256 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEE
T ss_pred CCCCCCCCEeEEEEECCCCeEE
Confidence 3599999998755444444333
No 285
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.82 E-value=34 Score=20.31 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=14.2
Q ss_pred eecCCCCCeEEEeecCCceEEE
Q 035423 11 IQCRECGYRILYKKRTRRIVQY 32 (35)
Q Consensus 11 irC~~CG~RIlyK~R~~~~~~~ 32 (35)
--|+.||..|.--+=..+...|
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~ 262 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFY 262 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEE
T ss_pred CCCCCCCCEeeEEEECCCceEE
Confidence 4599999998755444444433
No 286
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=33.60 E-value=14 Score=20.54 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=10.7
Q ss_pred CCCCceecCCCCCeE
Q 035423 6 KPGDVIQCRECGYRI 20 (35)
Q Consensus 6 k~~~~irC~~CG~RI 20 (35)
+....-+|..||.++
T Consensus 37 K~~~~pkC~~cg~~L 51 (119)
T 3iz5_i 37 KRASGPKCPVTGKKI 51 (119)
T ss_dssp CCSSCCCSTTSSCCS
T ss_pred cCCCCCCCCCCCCcc
Confidence 345566799999763
No 287
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=33.57 E-value=8.8 Score=23.93 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=10.0
Q ss_pred ceecCCCCCeEEEe
Q 035423 10 VIQCRECGYRILYK 23 (35)
Q Consensus 10 ~irC~~CG~RIlyK 23 (35)
.+-||.||..-|=+
T Consensus 34 n~yCPnCG~~~l~~ 47 (257)
T 4esj_A 34 QSYCPNCGNNPLNH 47 (257)
T ss_dssp HCCCTTTCCSSCEE
T ss_pred CCcCCCCCChhhhh
Confidence 35699999975543
No 288
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=33.29 E-value=18 Score=20.13 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=10.9
Q ss_pred CCCCceecCCCCCeE
Q 035423 6 KPGDVIQCRECGYRI 20 (35)
Q Consensus 6 k~~~~irC~~CG~RI 20 (35)
+....-+|..||.++
T Consensus 37 K~~~~pkCg~Cg~~L 51 (121)
T 3u5e_g 37 KLATRPKCGDCGSAL 51 (121)
T ss_dssp CCCCCCBCTTTCCBC
T ss_pred cCCCCCCCCCCCCcc
Confidence 445566799999864
No 289
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.08 E-value=15 Score=18.63 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=10.1
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
....|++|+..|
T Consensus 27 ~~A~Ck~C~k~l 38 (76)
T 2djr_A 27 QYATCRLCGRQV 38 (76)
T ss_dssp SCEEESSSCCBC
T ss_pred CEEECCCCCCcc
Confidence 468999999876
No 290
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=33.07 E-value=30 Score=19.81 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=11.8
Q ss_pred CCCceecCCCCCeEE
Q 035423 7 PGDVIQCRECGYRIL 21 (35)
Q Consensus 7 ~~~~irC~~CG~RIl 21 (35)
....+.|..||--++
T Consensus 169 ~~~~~~C~~CGE~~~ 183 (204)
T 2gvi_A 169 NGAKVRCDVCGEYTY 183 (204)
T ss_dssp CCCEEECTTTCCEEE
T ss_pred CCCceECCCCCCchh
Confidence 356799999998754
No 291
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=33.02 E-value=15 Score=17.08 Aligned_cols=11 Identities=18% Similarity=0.848 Sum_probs=8.6
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
+.+|.+|+++-
T Consensus 27 G~kC~~Ck~~c 37 (49)
T 1kbe_A 27 GVKCKHCRLKC 37 (49)
T ss_dssp EEEETTTTEEE
T ss_pred cCCCCCCCCcc
Confidence 48899998863
No 292
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=32.93 E-value=17 Score=21.19 Aligned_cols=11 Identities=36% Similarity=0.597 Sum_probs=8.6
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
.-.|-+||+.|
T Consensus 5 ~e~CsFcG~~I 15 (162)
T 3iz5_Z 5 TELCRFSGQKI 15 (162)
T ss_dssp CEECTTTCSEE
T ss_pred EEEecCcCCcc
Confidence 35699999886
No 293
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.65 E-value=22 Score=15.04 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.0
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 10 ~k~~~C~~C~k~ 21 (54)
T 2eps_A 10 GKPYICQSCGKG 21 (54)
T ss_dssp SCCEECSSSCCE
T ss_pred CCCeECCCCCcc
Confidence 346789999875
No 294
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=31.56 E-value=19 Score=12.47 Aligned_cols=10 Identities=40% Similarity=1.009 Sum_probs=7.8
Q ss_pred ceecC--CCCCe
Q 035423 10 VIQCR--ECGYR 19 (35)
Q Consensus 10 ~irC~--~CG~R 19 (35)
+..|+ .||..
T Consensus 2 ~~~C~~~~C~k~ 13 (29)
T 2ab3_A 2 VYVCHFENCGRS 13 (29)
T ss_dssp CEEECSTTTCEE
T ss_pred CCCCcCCcCcCc
Confidence 46799 99975
No 295
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=31.51 E-value=17 Score=20.04 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=9.5
Q ss_pred CceecCCCCCeEE
Q 035423 9 DVIQCRECGYRIL 21 (35)
Q Consensus 9 ~~irC~~CG~RIl 21 (35)
-.-+|+.||+-.+
T Consensus 46 ~~~rC~~CG~~~f 58 (145)
T 2gnr_A 46 IGSKCSKCGRIFV 58 (145)
T ss_dssp EEEECTTTCCEEE
T ss_pred EEEEECCCCcEEe
Confidence 3568999998644
No 296
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=31.04 E-value=14 Score=17.33 Aligned_cols=8 Identities=38% Similarity=1.248 Sum_probs=5.7
Q ss_pred ecCCCCCe
Q 035423 12 QCRECGYR 19 (35)
Q Consensus 12 rC~~CG~R 19 (35)
.|..||..
T Consensus 19 ~C~~C~~~ 26 (64)
T 2odd_A 19 SCWNCGRK 26 (64)
T ss_dssp SCTTTSSC
T ss_pred cCccccCC
Confidence 67778763
No 297
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.00 E-value=23 Score=15.68 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=6.5
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 45 ~~~C~~C~k~ 54 (74)
T 2lce_A 45 PYRCNICGAQ 54 (74)
T ss_dssp SEECTTTCCE
T ss_pred CEECCCCCch
Confidence 4667777754
No 298
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=30.99 E-value=23 Score=16.24 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=6.1
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+-.|..||..
T Consensus 4 py~C~~C~k~ 13 (60)
T 4gzn_C 4 PFFCNFCGKT 13 (60)
T ss_dssp CEECTTTCCE
T ss_pred CccCCCCCCE
Confidence 4567777654
No 299
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=30.96 E-value=21 Score=18.81 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.0
Q ss_pred ccCCCCceecCCCCCe
Q 035423 4 TLKPGDVIQCRECGYR 19 (35)
Q Consensus 4 ~lk~~~~irC~~CG~R 19 (35)
++...+...|+.||.-
T Consensus 59 sl~r~P~~~C~~Cg~~ 74 (92)
T 2kwq_A 59 SLDRLPKKHCSTCGLF 74 (92)
T ss_dssp ESSSSCCSCCTTTCSC
T ss_pred EeeeCCCCCCCCCCCC
Confidence 4567788899999976
No 300
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=30.96 E-value=16 Score=18.46 Aligned_cols=11 Identities=45% Similarity=0.905 Sum_probs=9.1
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
||||=.||.=|
T Consensus 4 PVRCFTCGkvi 14 (66)
T 4ayb_N 4 PIRCFTCGSLI 14 (66)
T ss_dssp CSBCTTTCCBC
T ss_pred CcccCCCcHhH
Confidence 79999999743
No 301
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.77 E-value=24 Score=16.73 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=10.5
Q ss_pred CCCCceecCCCCCe
Q 035423 6 KPGDVIQCRECGYR 19 (35)
Q Consensus 6 k~~~~irC~~CG~R 19 (35)
....+..|..||..
T Consensus 9 ~~ekpy~C~~CgK~ 22 (66)
T 2epp_A 9 REAGILPCGLCGKV 22 (66)
T ss_dssp CCCCCCCCTTTCCC
T ss_pred CCccCcCCCCCCCc
Confidence 34456889999976
No 302
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=30.75 E-value=20 Score=21.79 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=7.8
Q ss_pred CceecCCCCC
Q 035423 9 DVIQCRECGY 18 (35)
Q Consensus 9 ~~irC~~CG~ 18 (35)
....||+||.
T Consensus 20 ~~~~Cp~Cg~ 29 (345)
T 3k7a_M 20 IVLTCPECKV 29 (345)
T ss_dssp CCCCCSTTCC
T ss_pred CCCcCcCCCC
Confidence 3567999987
No 303
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=30.67 E-value=23 Score=15.60 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=7.1
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 56 ~~~~C~~C~~~ 66 (82)
T 2kmk_A 56 KPHKCQVCGKA 66 (82)
T ss_dssp CCEECTTTSCE
T ss_pred CCCcCCCcchh
Confidence 34677777754
No 304
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=30.65 E-value=29 Score=16.22 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=9.0
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+.+|..|++.
T Consensus 38 ~qg~~C~~C~~~ 49 (65)
T 2enz_A 38 RQGLKCDACGMN 49 (65)
T ss_dssp SCSEEESSSCCE
T ss_pred CcccccCCCCCc
Confidence 356888888875
No 305
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.60 E-value=24 Score=15.75 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=8.3
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 46 ~~~~C~~C~~~ 56 (86)
T 1x6h_A 46 AAFVCSKCGKT 56 (86)
T ss_dssp CCEECSSSCCE
T ss_pred cceECCCCCCh
Confidence 35788888875
No 306
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=30.34 E-value=21 Score=15.76 Aligned_cols=11 Identities=36% Similarity=1.298 Sum_probs=7.7
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+.+|..|++.
T Consensus 26 qG~~C~~C~~~ 36 (52)
T 1faq_A 26 NGFRCQTCGYK 36 (52)
T ss_dssp SEEECTTTTCC
T ss_pred cCCEeCCCCCe
Confidence 46778877764
No 307
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.26 E-value=22 Score=16.33 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=9.8
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
.....||.|...+
T Consensus 57 ~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 57 DGKGNCPVCRVPY 69 (85)
T ss_dssp TSCBCCTTTCCCC
T ss_pred CCCCCCCCCCCcC
Confidence 3468899998775
No 308
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=30.13 E-value=23 Score=18.60 Aligned_cols=12 Identities=50% Similarity=0.891 Sum_probs=10.0
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
.|.|.|-+||..
T Consensus 19 ~d~iiClecGK~ 30 (87)
T 2jsp_A 19 DDHIVCLECGGS 30 (87)
T ss_dssp SSCEECTBTCCE
T ss_pred CCceEecccchh
Confidence 467899999985
No 309
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=30.06 E-value=27 Score=19.48 Aligned_cols=13 Identities=23% Similarity=0.887 Sum_probs=10.4
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
...|+|.+||--+
T Consensus 18 v~~V~C~nCgr~v 30 (119)
T 2xzm_5 18 TRTVPCTNCGRQV 30 (119)
T ss_dssp CCEEECTTTCCEE
T ss_pred CccEeeCCccccC
Confidence 4579999999764
No 310
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=29.98 E-value=22 Score=14.48 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=5.5
Q ss_pred CCeEEEe
Q 035423 17 GYRILYK 23 (35)
Q Consensus 17 G~RIlyK 23 (35)
|.||+|-
T Consensus 3 GTrIiYd 9 (21)
T 3hxi_C 3 SGRIIYD 9 (26)
T ss_pred ceEEEEe
Confidence 7789884
No 311
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=29.81 E-value=27 Score=19.09 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=11.3
Q ss_pred ceecCCCCCeEEEe
Q 035423 10 VIQCRECGYRILYK 23 (35)
Q Consensus 10 ~irC~~CG~RIlyK 23 (35)
-..|.+||+..+.-
T Consensus 69 rl~C~eC~~~~~~~ 82 (109)
T 4a18_C 69 KFDCTTCKTKRVIP 82 (109)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEecccCcccccc
Confidence 46899999987764
No 312
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=29.78 E-value=27 Score=20.23 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=8.7
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..-+||.||..
T Consensus 144 ~~p~C~~Cgg~ 154 (246)
T 1yc5_A 144 DVPLCDDCNSL 154 (246)
T ss_dssp SSCBCTTTCCB
T ss_pred CCCCCCCCCCc
Confidence 45699999975
No 313
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.63 E-value=25 Score=15.66 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=7.4
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 45 ~~~~C~~C~~~ 55 (77)
T 2cot_A 45 KPYKCDECGKA 55 (77)
T ss_dssp CSEECSSSCCE
T ss_pred cCeeCCCCCCc
Confidence 35678888764
No 314
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=29.46 E-value=24 Score=17.38 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=9.9
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
..-+.|+-||.+-
T Consensus 15 ktH~~CrRCG~~s 27 (57)
T 1vq8_1 15 TTHTKCRRCGEKS 27 (57)
T ss_dssp CCEEECTTTCSEE
T ss_pred CccccccccCChh
Confidence 4568899999873
No 315
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=29.41 E-value=27 Score=20.30 Aligned_cols=11 Identities=27% Similarity=0.905 Sum_probs=8.7
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
.-+||.||..+
T Consensus 142 ~p~C~~Cgg~l 152 (249)
T 1m2k_A 142 LPKCDKCGSLL 152 (249)
T ss_dssp CCBCSSSSSBE
T ss_pred CCCCCCCCCCc
Confidence 46999999853
No 316
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=29.31 E-value=16 Score=18.46 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=8.2
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
+.-.||+||..
T Consensus 22 ~~~~CPnC~s~ 32 (69)
T 1ryq_A 22 SEDRCPVCGSR 32 (69)
T ss_dssp SSSSCTTTCCC
T ss_pred cCCcCCCccCC
Confidence 45579999964
No 317
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.21 E-value=34 Score=16.86 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=9.8
Q ss_pred CCCceecCCCCCeEEEe
Q 035423 7 PGDVIQCRECGYRILYK 23 (35)
Q Consensus 7 ~~~~irC~~CG~RIlyK 23 (35)
..+...||.|...+-|-
T Consensus 7 LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 7 LLEVLACPKDKGPLRYL 23 (67)
T ss_dssp GTCCCBCTTTCCBCEEE
T ss_pred HHHHhCCCCCCCcCeEe
Confidence 34556666666665543
No 318
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=29.17 E-value=22 Score=12.81 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=7.3
Q ss_pred ceecC--CCCCe
Q 035423 10 VIQCR--ECGYR 19 (35)
Q Consensus 10 ~irC~--~CG~R 19 (35)
+..|+ .||..
T Consensus 2 p~~C~~~~C~k~ 13 (31)
T 1sp2_A 2 PFMCTWSYCGKR 13 (31)
T ss_dssp CCBCCSTTCCCB
T ss_pred CcCCcCCCCCcc
Confidence 35787 89975
No 319
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=29.08 E-value=17 Score=16.99 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=8.7
Q ss_pred CCceec-CCCCCeEE
Q 035423 8 GDVIQC-RECGYRIL 21 (35)
Q Consensus 8 ~~~irC-~~CG~RIl 21 (35)
...|.| ..||..|+
T Consensus 14 ~~~v~C~~~C~~~v~ 28 (76)
T 2yuc_A 14 FNVIPCPNRCPMKLS 28 (76)
T ss_dssp CSCCBCTTCCSCBCC
T ss_pred CcccCCCccccHHhh
Confidence 456777 36776654
No 320
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=28.98 E-value=18 Score=18.92 Aligned_cols=8 Identities=50% Similarity=1.294 Sum_probs=6.7
Q ss_pred ecCCCCCe
Q 035423 12 QCRECGYR 19 (35)
Q Consensus 12 rC~~CG~R 19 (35)
.||+||..
T Consensus 37 ~CPnCgs~ 44 (81)
T 3p8b_A 37 RCPVCGSR 44 (81)
T ss_dssp SCTTTCCC
T ss_pred CCCCCCCC
Confidence 59999984
No 321
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.98 E-value=21 Score=16.16 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=8.5
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
....||.|+..|
T Consensus 56 ~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 56 GFFKCPLCKTSV 67 (73)
T ss_dssp SCCCCSSSCCCC
T ss_pred CCCCCCCCCCcC
Confidence 456788887764
No 322
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=28.88 E-value=77 Score=18.79 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=16.6
Q ss_pred eecCCCCCeEEEeecCCceEE
Q 035423 11 IQCRECGYRILYKKRTRRIVQ 31 (35)
Q Consensus 11 irC~~CG~RIlyK~R~~~~~~ 31 (35)
-+||.||-.|=....+..+..
T Consensus 115 S~Cp~tG~pI~ltv~~~~i~~ 135 (220)
T 3f2g_A 115 SHCAATGAPVSLTVSPSEIQA 135 (220)
T ss_dssp EECTTTCCEEEEEECSSCEEE
T ss_pred ecCCCCCCeEEEEEcCCceee
Confidence 469999999998888775543
No 323
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=28.85 E-value=69 Score=20.80 Aligned_cols=24 Identities=13% Similarity=0.362 Sum_probs=17.5
Q ss_pred eecCCC--CCeEEEeec-CCceEEEEe
Q 035423 11 IQCREC--GYRILYKKR-TRRIVQYEA 34 (35)
Q Consensus 11 irC~~C--G~RIlyK~R-~~~~~~~~A 34 (35)
--|++| |+.|+...+ ..+++.++.
T Consensus 4 t~C~~C~~gC~i~v~v~~~g~v~rv~g 30 (727)
T 2e7z_A 4 VVCQSCDINCVVEAEVKADGKIQTKSI 30 (727)
T ss_dssp EECCSSTTCCEEEEEECTTSCEEEEEC
T ss_pred eECCCCcCCCCEEEEEEECCEEEEEEc
Confidence 358888 577888887 777777653
No 324
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=28.74 E-value=28 Score=15.58 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=11.6
Q ss_pred CCCCceecCCCCCeEE
Q 035423 6 KPGDVIQCRECGYRIL 21 (35)
Q Consensus 6 k~~~~irC~~CG~RIl 21 (35)
......+|..|+..|.
T Consensus 7 ~~~~~~~C~~C~~~i~ 22 (72)
T 3f6q_B 7 QGSASATCERCKGGFA 22 (72)
T ss_dssp CCCTTCBCTTTCCBCC
T ss_pred cCcCCccchhcCcccc
Confidence 3355678999998865
No 325
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=28.08 E-value=28 Score=15.66 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=7.3
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 61 ~~~~C~~C~~~ 71 (90)
T 1a1h_A 61 KPFACDICGRK 71 (90)
T ss_dssp CCEECTTTCCE
T ss_pred CCccCCCCCch
Confidence 34677777764
No 326
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=28.06 E-value=41 Score=19.23 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=12.0
Q ss_pred CCCceecCCCCCeEE
Q 035423 7 PGDVIQCRECGYRIL 21 (35)
Q Consensus 7 ~~~~irC~~CG~RIl 21 (35)
+...+.|..||--++
T Consensus 160 ~~~~~~C~~CGE~~~ 174 (191)
T 3d00_A 160 KGKIVLCPQCREAYP 174 (191)
T ss_dssp CCCEEECTTTCCEEE
T ss_pred CcCCEECCcCCCChh
Confidence 367899999997764
No 327
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.92 E-value=33 Score=19.19 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=11.1
Q ss_pred CCCceecCCCCCeE
Q 035423 7 PGDVIQCRECGYRI 20 (35)
Q Consensus 7 ~~~~irC~~CG~RI 20 (35)
.+....|.+|.++|
T Consensus 82 ~~~g~~C~~C~~~V 95 (153)
T 2zet_C 82 LNSRRQCLECSLFV 95 (153)
T ss_dssp SSCCEECTTTCCEE
T ss_pred cCCCCcCCCCCchh
Confidence 45578999999886
No 328
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.86 E-value=17 Score=20.94 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=7.7
Q ss_pred eecCCCCCeE
Q 035423 11 IQCRECGYRI 20 (35)
Q Consensus 11 irC~~CG~RI 20 (35)
-.|-+||+.|
T Consensus 4 ~~C~Fcg~~I 13 (157)
T 2zkr_u 4 ELCSFSGYKI 13 (157)
T ss_dssp CBCTTTCCBC
T ss_pred eeecCcCCcc
Confidence 4688998875
No 329
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.49 E-value=29 Score=14.88 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=10.0
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
..+..|+.||...
T Consensus 16 ~~~~~C~~C~k~f 28 (73)
T 2ctu_A 16 DRSQKCSKCGIIF 28 (73)
T ss_dssp CSEEECSSSCCEE
T ss_pred CCCeeCCcccchh
Confidence 3468999999863
No 330
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.40 E-value=20 Score=15.88 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=4.1
Q ss_pred eecCCCCC
Q 035423 11 IQCRECGY 18 (35)
Q Consensus 11 irC~~CG~ 18 (35)
..|+.||.
T Consensus 69 ~~C~~C~k 76 (79)
T 2dlk_A 69 YICEFSGP 76 (79)
T ss_dssp CSCCSSSC
T ss_pred eeCCCCCC
Confidence 45555553
No 331
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=27.36 E-value=22 Score=18.35 Aligned_cols=11 Identities=18% Similarity=0.779 Sum_probs=8.8
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..+|||.|...
T Consensus 25 ~~LRCp~Cqnq 35 (84)
T 2hl7_A 25 QELRCPKCQNQ 35 (84)
T ss_dssp HHEECTTSSSC
T ss_pred HcCcCCCCCCC
Confidence 46899999874
No 332
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.32 E-value=27 Score=16.69 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=12.3
Q ss_pred CCCCceecCCCCCeEE
Q 035423 6 KPGDVIQCRECGYRIL 21 (35)
Q Consensus 6 k~~~~irC~~CG~RIl 21 (35)
+.+...+|..|+..|.
T Consensus 11 ~~~~~~~C~~C~~~I~ 26 (82)
T 2co8_A 11 EAGAGDLCALCGEHLY 26 (82)
T ss_dssp CCCSSCBCSSSCCBCC
T ss_pred CCCCCCCCcccCCCcc
Confidence 4556778999998874
No 333
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=27.32 E-value=23 Score=18.92 Aligned_cols=13 Identities=15% Similarity=0.766 Sum_probs=6.6
Q ss_pred ceecCCCCCeEEE
Q 035423 10 VIQCRECGYRILY 22 (35)
Q Consensus 10 ~irC~~CG~RIly 22 (35)
.+.|++|+..+.+
T Consensus 137 ~~~C~~C~~~~~~ 149 (170)
T 3hcs_A 137 QVSCDNCAASMAF 149 (170)
T ss_dssp EEECTTTCCEEEG
T ss_pred CeECCCCCCccCH
Confidence 3455555555443
No 334
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.32 E-value=31 Score=15.82 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=11.5
Q ss_pred CCCCceecCCCCCeEE
Q 035423 6 KPGDVIQCRECGYRIL 21 (35)
Q Consensus 6 k~~~~irC~~CG~RIl 21 (35)
......+|..||..|.
T Consensus 7 ~~~~~~~C~~C~~~I~ 22 (77)
T 1g47_A 7 NALASATCERCKGGFA 22 (77)
T ss_dssp SCCCCCBCSSSCCBCC
T ss_pred cCCCCCCchhcCCccC
Confidence 3455678999998763
No 335
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.17 E-value=18 Score=18.74 Aligned_cols=9 Identities=22% Similarity=0.829 Sum_probs=6.3
Q ss_pred ecCCCCCeE
Q 035423 12 QCRECGYRI 20 (35)
Q Consensus 12 rC~~CG~RI 20 (35)
.||+||..+
T Consensus 33 fCPeCgq~L 41 (81)
T 2jrp_A 33 LCPDCRQPL 41 (81)
T ss_dssp ECSSSCSCC
T ss_pred cCcchhhHH
Confidence 678887653
No 336
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=27.17 E-value=23 Score=21.04 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.6
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..-+||.||..
T Consensus 162 ~~P~C~~Cgg~ 172 (289)
T 1q1a_A 162 DFVKCDVCGEL 172 (289)
T ss_dssp SCCBCTTTCCB
T ss_pred CCccCCCCCCE
Confidence 34699999975
No 337
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=27.03 E-value=16 Score=20.21 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=11.2
Q ss_pred ccCCCCceecCCCCCe
Q 035423 4 TLKPGDVIQCRECGYR 19 (35)
Q Consensus 4 ~lk~~~~irC~~CG~R 19 (35)
+++......||+||..
T Consensus 54 E~~q~akytCPfCGk~ 69 (116)
T 3cc2_Z 54 ESEMNEDHACPNCGED 69 (116)
T ss_dssp HHHHHSCEECSSSCCE
T ss_pred HHHhccCCcCCCCCCc
Confidence 3445567789999874
No 338
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=26.86 E-value=29 Score=15.84 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=7.2
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 63 ~~~~C~~C~~~ 73 (96)
T 2dmd_A 63 RPFKCQICPYA 73 (96)
T ss_dssp CCEECSSSSCE
T ss_pred CCccCCCCCCc
Confidence 35677777764
No 339
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=26.83 E-value=26 Score=16.81 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=8.7
Q ss_pred CCCceecCC--CCC
Q 035423 7 PGDVIQCRE--CGY 18 (35)
Q Consensus 7 ~~~~irC~~--CG~ 18 (35)
..+++||.. |+.
T Consensus 6 ~~~pvRC~r~~Cra 19 (59)
T 2yrc_A 6 SGEPVLCSRTTCRA 19 (59)
T ss_dssp CCCCCBCSCTTTCC
T ss_pred CCCCcccCCCCCCe
Confidence 467888887 854
No 340
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.68 E-value=21 Score=18.95 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=12.1
Q ss_pred CCceecCCCCCeEEEe
Q 035423 8 GDVIQCRECGYRILYK 23 (35)
Q Consensus 8 ~~~irC~~CG~RIlyK 23 (35)
.--..|.+||+..+..
T Consensus 66 ~Lrl~C~eC~~~~~~~ 81 (94)
T 3j21_j 66 DLRFRCTECGKAHTRG 81 (94)
T ss_dssp CCCEEESSSCCEECCC
T ss_pred EEEEEecccCccceec
Confidence 3457899999987654
No 341
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.67 E-value=20 Score=16.09 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=8.6
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
...||.|+..+
T Consensus 43 ~~~CP~Cr~~~ 53 (65)
T 1g25_A 43 AGNCPECGTPL 53 (65)
T ss_dssp SSSCTTTCCCC
T ss_pred CCcCCCCCCcc
Confidence 56899998774
No 342
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.66 E-value=36 Score=18.57 Aligned_cols=13 Identities=15% Similarity=0.693 Sum_probs=10.2
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
.....|.+|.++|
T Consensus 70 ~~g~~C~~C~~~V 82 (134)
T 1zbd_B 70 SASVVCEDCKKNV 82 (134)
T ss_dssp CCEEECTTTCCEE
T ss_pred CCCCCCCCCCccc
Confidence 4568899998885
No 343
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=26.66 E-value=41 Score=15.26 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=5.3
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 7 ~~~C~~C~~~ 16 (95)
T 2yt9_A 7 GVACEICGKI 16 (95)
T ss_dssp CEECSSSCCE
T ss_pred CeECCCCCCc
Confidence 4555555543
No 344
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=26.31 E-value=28 Score=15.93 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=9.9
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
.....||.|+..+
T Consensus 51 ~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 51 GGKSSCPVCGISY 63 (79)
T ss_dssp CCCCCCSSSCCCC
T ss_pred CCCCcCCCCCCcC
Confidence 3478999998775
No 345
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=26.25 E-value=80 Score=20.50 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=18.0
Q ss_pred eecCCC--CCeEEEeecCCceEEEEe
Q 035423 11 IQCREC--GYRILYKKRTRRIVQYEA 34 (35)
Q Consensus 11 irC~~C--G~RIlyK~R~~~~~~~~A 34 (35)
--|+.| |+.|....+..+++.++.
T Consensus 6 t~C~~C~~gC~i~v~v~~g~v~~v~g 31 (715)
T 2iv2_X 6 TVCPYCASGCKINLVVDNGKIVRAEA 31 (715)
T ss_dssp EECSSBTTCCEEEEEEETTEEEEEEE
T ss_pred EECCCCCCCCCeEEEEECCEEEEEEe
Confidence 458888 577888888877777764
No 346
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.17 E-value=38 Score=17.08 Aligned_cols=10 Identities=20% Similarity=0.873 Sum_probs=6.4
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|++||..
T Consensus 18 py~C~~Cgk~ 27 (102)
T 2ghf_A 18 GYECKYCTFQ 27 (102)
T ss_dssp SEECSSCSCE
T ss_pred CcCCCCCCCc
Confidence 4567777654
No 347
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=26.10 E-value=20 Score=19.34 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=10.4
Q ss_pred CCceecCCCCCeEEEe
Q 035423 8 GDVIQCRECGYRILYK 23 (35)
Q Consensus 8 ~~~irC~~CG~RIlyK 23 (35)
..-+.|+.||.+.+-+
T Consensus 14 KtH~lCrRCG~~sfH~ 29 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHL 29 (97)
T ss_dssp CCEECCTTTCSSCEET
T ss_pred CCCCcCCCCCCccCcC
Confidence 3456788888776544
No 348
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.05 E-value=23 Score=17.54 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=7.6
Q ss_pred CceecCCCCCeEEE
Q 035423 9 DVIQCRECGYRILY 22 (35)
Q Consensus 9 ~~irC~~CG~RIly 22 (35)
+.+.||.|+...-|
T Consensus 7 eiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 7 DILACPICKGPLKL 20 (69)
T ss_dssp GTCCCTTTCCCCEE
T ss_pred hheeCCCCCCcCeE
Confidence 34556666655444
No 349
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.02 E-value=32 Score=16.67 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=8.1
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 33 ~~~~C~~C~k~ 43 (96)
T 2ctd_A 33 GSVSCPTCQAV 43 (96)
T ss_dssp SCEECTTTCSC
T ss_pred CCcCCCCCCCC
Confidence 45788888865
No 350
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=25.96 E-value=36 Score=16.17 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=10.3
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
.+..|-.||.+|
T Consensus 18 ~~~~C~~Cg~~i 29 (61)
T 4b6d_A 18 KPESCVPCGKRI 29 (61)
T ss_dssp SCEECTTTCCEE
T ss_pred CCcccccccCEE
Confidence 468999999998
No 351
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=25.89 E-value=26 Score=23.84 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=11.3
Q ss_pred CCceecCCCCCeEE
Q 035423 8 GDVIQCRECGYRIL 21 (35)
Q Consensus 8 ~~~irC~~CG~RIl 21 (35)
..+-.||.||..+.
T Consensus 403 ~~P~~CP~Cgs~l~ 416 (671)
T 2owo_A 403 VFPTHCPVCGSDVE 416 (671)
T ss_dssp CCCSBCTTTCCBEE
T ss_pred cCCCCCCCCCCEeE
Confidence 34678999999875
No 352
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=25.83 E-value=36 Score=15.37 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=8.3
Q ss_pred eecCCCCCeEE
Q 035423 11 IQCRECGYRIL 21 (35)
Q Consensus 11 irC~~CG~RIl 21 (35)
.+|..||..|.
T Consensus 3 ~~C~~C~~~I~ 13 (65)
T 2iyb_E 3 VVCQGCHNAID 13 (65)
T ss_dssp EECTTTSSEEC
T ss_pred CCCcCCCCeec
Confidence 47888888765
No 353
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.76 E-value=22 Score=16.29 Aligned_cols=13 Identities=15% Similarity=0.324 Sum_probs=9.5
Q ss_pred CceecCCCCCeEE
Q 035423 9 DVIQCRECGYRIL 21 (35)
Q Consensus 9 ~~irC~~CG~RIl 21 (35)
....||.|+..+-
T Consensus 58 ~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 58 GESSCPVCRISYQ 70 (85)
T ss_dssp SCCCCTTTCCSSC
T ss_pred CCCcCCCCCCccC
Confidence 4678999987653
No 354
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=25.67 E-value=25 Score=18.79 Aligned_cols=15 Identities=53% Similarity=1.074 Sum_probs=10.9
Q ss_pred CceecCCCCCeEEEe
Q 035423 9 DVIQCRECGYRILYK 23 (35)
Q Consensus 9 ~~irC~~CG~RIlyK 23 (35)
-.+.|-.||+.=-|-
T Consensus 93 vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 93 VVITCLECGYIMRYP 107 (120)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEECCCCCCEEEEc
Confidence 467899999864443
No 355
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.66 E-value=33 Score=16.38 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=12.3
Q ss_pred cCCCCceecCCCCCeEE
Q 035423 5 LKPGDVIQCRECGYRIL 21 (35)
Q Consensus 5 lk~~~~irC~~CG~RIl 21 (35)
.+....-+|..|+..|.
T Consensus 10 ~~~~~~~~C~~C~~~I~ 26 (80)
T 2dj7_A 10 IKIRGPSHCAGCKEEIK 26 (80)
T ss_dssp CCCSSCSCCTTTCCCCS
T ss_pred cCCCCCCCCcCcCCeeC
Confidence 34556678999998774
No 356
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.65 E-value=23 Score=17.45 Aligned_cols=14 Identities=14% Similarity=0.717 Sum_probs=7.7
Q ss_pred CceecCCCCCeEEE
Q 035423 9 DVIQCRECGYRILY 22 (35)
Q Consensus 9 ~~irC~~CG~RIly 22 (35)
+.+.||.|+..+-|
T Consensus 7 ~iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 7 EILVCPLCKGPLVF 20 (68)
T ss_dssp EECBCTTTCCBCEE
T ss_pred hheECCCCCCcCeE
Confidence 34556666655444
No 357
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.59 E-value=40 Score=18.02 Aligned_cols=12 Identities=42% Similarity=0.919 Sum_probs=9.2
Q ss_pred CceecC-CCCCeE
Q 035423 9 DVIQCR-ECGYRI 20 (35)
Q Consensus 9 ~~irC~-~CG~RI 20 (35)
.+|.|| .||-.|
T Consensus 36 ~~i~CP~~Cga~i 48 (100)
T 2yre_A 36 DLIGCPLVCGAVF 48 (100)
T ss_dssp CEEECTTCCSCEE
T ss_pred eeeeCCcccCCee
Confidence 478899 899843
No 358
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=25.46 E-value=34 Score=21.20 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=12.4
Q ss_pred CCCCceecCCCCCeE
Q 035423 6 KPGDVIQCRECGYRI 20 (35)
Q Consensus 6 k~~~~irC~~CG~RI 20 (35)
..+|.++|-+||.-+
T Consensus 36 g~~D~v~Cf~C~~~l 50 (345)
T 3t6p_A 36 GRNDDVKCFSCDGGL 50 (345)
T ss_dssp SSTTCEEETTTCCEE
T ss_pred CCCCeEEecCCCCCc
Confidence 357899999999764
No 359
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.29 E-value=33 Score=16.26 Aligned_cols=10 Identities=20% Similarity=0.740 Sum_probs=6.1
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 94 ~~~C~~C~~~ 103 (124)
T 2dlq_A 94 PYKCSSCSQQ 103 (124)
T ss_dssp SEECSSSCCE
T ss_pred CccCCCccch
Confidence 4666666654
No 360
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=25.27 E-value=33 Score=15.66 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=5.6
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 3 ~~~C~~C~k~ 12 (88)
T 1llm_C 3 PFQCRICMRN 12 (88)
T ss_dssp CEECTTTCCE
T ss_pred CCcCCCCCCc
Confidence 3556666654
No 361
>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*
Probab=25.25 E-value=56 Score=17.30 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=14.4
Q ss_pred cCCCCceecCCCCCeEEEe
Q 035423 5 LKPGDVIQCRECGYRILYK 23 (35)
Q Consensus 5 lk~~~~irC~~CG~RIlyK 23 (35)
++......|+.|+.+..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~ 185 (192)
T 3mqg_A 167 LRGNAEATCPHTGERYILT 185 (192)
T ss_dssp SSSSEEEECTTTCCEEEEE
T ss_pred ccccccccccccCCeEEEc
Confidence 4455579999999997664
No 362
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=25.22 E-value=44 Score=16.21 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=9.5
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
....+|..|++.+
T Consensus 49 kqG~~C~~C~~~~ 61 (77)
T 2enn_A 49 KQGYQCRQCNAAI 61 (77)
T ss_dssp CCEEECSSSCCEE
T ss_pred ccccCcCCCCCcC
Confidence 3678888888764
No 363
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=25.11 E-value=37 Score=18.28 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=12.0
Q ss_pred CCCCceecCCCCCeEE
Q 035423 6 KPGDVIQCRECGYRIL 21 (35)
Q Consensus 6 k~~~~irC~~CG~RIl 21 (35)
+...-.+|+.||.=|.
T Consensus 3 ~~~~fYkC~~CGnive 18 (126)
T 1vzi_A 3 ERLQVYKCEVCGNIVE 18 (126)
T ss_dssp CTTCEEECTTTCCEEE
T ss_pred ccCcEEEcCCCCeEEE
Confidence 3456789999998664
No 364
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=24.49 E-value=24 Score=18.59 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.7
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..+|||.|...
T Consensus 22 ~~LRCpvCqnq 32 (90)
T 2kw0_A 22 EELRCPKCQNN 32 (90)
T ss_dssp HSSBCSCTTSC
T ss_pred HcCcCCCCCCC
Confidence 46899999864
No 365
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=24.29 E-value=28 Score=15.96 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=7.6
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 74 ~~~~C~~C~~~ 84 (100)
T 2ebt_A 74 KPFQCGVCNRS 84 (100)
T ss_dssp CSCBCSSSCCB
T ss_pred CCeECCCCcCc
Confidence 35678888764
No 366
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=24.02 E-value=24 Score=17.78 Aligned_cols=7 Identities=29% Similarity=1.037 Sum_probs=5.1
Q ss_pred ecCCCCC
Q 035423 12 QCRECGY 18 (35)
Q Consensus 12 rC~~CG~ 18 (35)
+|+.||.
T Consensus 57 kC~~C~S 63 (79)
T 2k2d_A 57 KCKICES 63 (79)
T ss_dssp CCTTTSC
T ss_pred cCcCCCC
Confidence 7777774
No 367
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=23.93 E-value=43 Score=15.52 Aligned_cols=11 Identities=27% Similarity=1.050 Sum_probs=8.6
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+.+|..|++.
T Consensus 36 qg~~C~~C~~~ 46 (65)
T 3uej_A 36 QGLKCEDCGMN 46 (65)
T ss_dssp CEEEETTTCCE
T ss_pred eeeECCCCCCe
Confidence 56888888865
No 368
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=23.90 E-value=29 Score=18.46 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=10.4
Q ss_pred ceecCCCCCeEEE
Q 035423 10 VIQCRECGYRILY 22 (35)
Q Consensus 10 ~irC~~CG~RIly 22 (35)
-.+|.+||+..+.
T Consensus 68 rl~C~~C~~~~~~ 80 (92)
T 1vq8_3 68 KYRCGECGKAHLR 80 (92)
T ss_dssp EEEETTTCCEECC
T ss_pred EEEecccChhhcc
Confidence 4689999998654
No 369
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=23.69 E-value=33 Score=16.10 Aligned_cols=11 Identities=36% Similarity=1.096 Sum_probs=8.5
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
...+|..|++.
T Consensus 40 qg~~C~~C~~~ 50 (66)
T 1y8f_A 40 QGMRCTECGVK 50 (66)
T ss_dssp EEEEETTTCCE
T ss_pred ceeEcCCCCCe
Confidence 56788888875
No 370
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.64 E-value=15 Score=18.36 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=9.2
Q ss_pred ecCCCCCeEEEee
Q 035423 12 QCRECGYRILYKK 24 (35)
Q Consensus 12 rC~~CG~RIlyK~ 24 (35)
-||.|....|+|+
T Consensus 51 ycp~c~kHtlhkE 63 (66)
T 3bbo_3 51 FCPYCYKHTIHGE 63 (66)
T ss_dssp CCCSSSSCCCCCC
T ss_pred cCCCCCCeeeEEe
Confidence 3778877777765
No 371
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.48 E-value=29 Score=17.38 Aligned_cols=12 Identities=42% Similarity=0.905 Sum_probs=9.1
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
.-+.|+-||.+-
T Consensus 16 tH~lCrRCG~~s 27 (62)
T 3j21_e 16 THIRCRRCGRVS 27 (62)
T ss_dssp CCCBCSSSCSBC
T ss_pred ceeeecccCcch
Confidence 467888888873
No 372
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.47 E-value=45 Score=16.30 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=9.5
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
....+|..|++.+
T Consensus 43 kqg~~C~~C~~~~ 55 (83)
T 2yuu_A 43 KQGYKCRQCNAAI 55 (83)
T ss_dssp CCEEEETTTCCEE
T ss_pred ccccccCCcCCee
Confidence 3578898888753
No 373
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=23.30 E-value=30 Score=17.29 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=7.7
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
.+.|+.||-.
T Consensus 5 ~~~c~~c~~~ 14 (148)
T 3p2a_A 5 NTVCTACMAT 14 (148)
T ss_dssp EEECTTTCCE
T ss_pred EEECcccccc
Confidence 4679999973
No 374
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.21 E-value=38 Score=15.94 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=7.7
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 64 ~~~~C~~C~~~ 74 (110)
T 2csh_A 64 KPYECNICAKR 74 (110)
T ss_dssp CCEECSSSCCE
T ss_pred CCeeCCCCcch
Confidence 35678888865
No 375
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=23.15 E-value=1.1e+02 Score=20.09 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=17.9
Q ss_pred eecCCC--CCeEEEeecCCceEEEEe
Q 035423 11 IQCREC--GYRILYKKRTRRIVQYEA 34 (35)
Q Consensus 11 irC~~C--G~RIlyK~R~~~~~~~~A 34 (35)
--|++| |+.|....+.-+++.++.
T Consensus 42 t~C~~C~~gC~i~v~v~~g~v~~v~g 67 (765)
T 2vpz_A 42 QICEGCFWRCGIVAHAVGNRVYKVEG 67 (765)
T ss_dssp EECCSSTTCCEEEEEESSSCEEEEEE
T ss_pred eECCCCcCCCceEEEEECCEEEEEEc
Confidence 459988 578888888777777763
No 376
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.13 E-value=27 Score=16.58 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=8.3
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
.+..|+.||..
T Consensus 23 ~~~~C~~C~k~ 33 (98)
T 2gqj_A 23 GEAVCPTCNVV 33 (98)
T ss_dssp SCCCCTTTCCC
T ss_pred CCcCCCCCCCC
Confidence 45788888875
No 377
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.06 E-value=48 Score=16.33 Aligned_cols=13 Identities=15% Similarity=0.669 Sum_probs=9.6
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
....+|..|++.+
T Consensus 43 kqG~~C~~C~~~~ 55 (85)
T 2eli_A 43 HQGMKCDTCDMNV 55 (85)
T ss_dssp SCEEECSSSCCEE
T ss_pred cCCCcCCCcCCcc
Confidence 3678899888763
No 378
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=22.87 E-value=17 Score=19.61 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=9.4
Q ss_pred eecCCCCCeEEE
Q 035423 11 IQCRECGYRILY 22 (35)
Q Consensus 11 irC~~CG~RIly 22 (35)
=-|..||..|.+
T Consensus 76 RvCn~CGkPI~l 87 (96)
T 3mhs_E 76 RVCEKCGKPLAL 87 (96)
T ss_dssp EEETTTCCEECG
T ss_pred hhhhccCCceeH
Confidence 359999998754
No 379
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.87 E-value=32 Score=15.98 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=8.9
Q ss_pred CceecCCCCCeE
Q 035423 9 DVIQCRECGYRI 20 (35)
Q Consensus 9 ~~irC~~CG~RI 20 (35)
....||.|...+
T Consensus 55 ~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 55 NGVRCPFCSKIT 66 (88)
T ss_dssp SCBCCTTTCCCB
T ss_pred CCcCCCCCCCcc
Confidence 357899998764
No 380
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=22.74 E-value=1e+02 Score=20.71 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=18.2
Q ss_pred eecCCCC--CeEEEeecCCceEEEEe
Q 035423 11 IQCRECG--YRILYKKRTRRIVQYEA 34 (35)
Q Consensus 11 irC~~CG--~RIlyK~R~~~~~~~~A 34 (35)
--|++|| +.|....+..+++.++.
T Consensus 17 t~C~~C~~gC~i~v~v~~g~iv~v~g 42 (802)
T 3ml1_A 17 APCRFCGTGCGVTVAVKDNKVVATQG 42 (802)
T ss_dssp EECSSCTTCCEEEEEEETTEEEEEEE
T ss_pred EECCCCCCCCCeEEEEECCEEEEEEc
Confidence 3699995 77888888777777653
No 381
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=22.68 E-value=34 Score=16.80 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=8.3
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
...+||.||-|
T Consensus 25 akY~CPrC~~r 35 (59)
T 1x4s_A 25 ARYTCPRCNAP 35 (59)
T ss_dssp ECEECTTTCCE
T ss_pred ccccCcCCCCC
Confidence 46789999865
No 382
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=22.43 E-value=44 Score=15.52 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=7.6
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 15 ~~~~~C~~C~~~ 26 (106)
T 2ee8_A 15 KKEFICKFCGRH 26 (106)
T ss_dssp CCCCBCSSSCCB
T ss_pred CcCeECCCCCCc
Confidence 345677777754
No 383
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=22.43 E-value=51 Score=14.34 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=10.7
Q ss_pred CCceecC-CCCCeEE
Q 035423 8 GDVIQCR-ECGYRIL 21 (35)
Q Consensus 8 ~~~irC~-~CG~RIl 21 (35)
.+-+.|| +..|+|+
T Consensus 3 ~~~v~CPyd~~H~i~ 17 (37)
T 2vy4_A 3 DEVVICPYDSNHHMP 17 (37)
T ss_dssp CCCEECTTTSSCEEC
T ss_pred ceEEECCCCCCeEeC
Confidence 4678999 7788865
No 384
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=22.38 E-value=32 Score=21.51 Aligned_cols=10 Identities=30% Similarity=0.906 Sum_probs=8.2
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
.-+||.||..
T Consensus 171 ~P~Cp~Cgg~ 180 (361)
T 1q14_A 171 FVKCDVCGEL 180 (361)
T ss_dssp CCBCTTTCCB
T ss_pred CCCCcCCCCE
Confidence 4699999975
No 385
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=22.35 E-value=38 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=12.6
Q ss_pred CceecCCCCCeEEEe
Q 035423 9 DVIQCRECGYRILYK 23 (35)
Q Consensus 9 ~~irC~~CG~RIlyK 23 (35)
.++-||.||=++.+.
T Consensus 177 qp~aC~~CGP~l~l~ 191 (772)
T 4g9i_A 177 EPTACPVCGPSYRLY 191 (772)
T ss_dssp TTCCCTTTSCCEEEE
T ss_pred CCCCCccCCceEEEE
Confidence 578999999998664
No 386
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=22.31 E-value=51 Score=19.25 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=10.5
Q ss_pred ceecCCCCCeEEEe
Q 035423 10 VIQCRECGYRILYK 23 (35)
Q Consensus 10 ~irC~~CG~RIlyK 23 (35)
.++||.||..-.|.
T Consensus 22 ~l~Cp~C~~~~~F~ 35 (206)
T 3flo_B 22 ELSCPSCDKRFPFG 35 (206)
T ss_dssp EEECTTTCCEEEEC
T ss_pred EEECCCCCCccCCC
Confidence 47899999876554
No 387
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.16 E-value=39 Score=16.46 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=5.4
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|++||..
T Consensus 56 ~~~C~~C~k~ 65 (85)
T 2lv2_A 56 VFPCKYCPAT 65 (85)
T ss_dssp SEECTTSSCE
T ss_pred ccCCCCCCCE
Confidence 4556666543
No 388
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=21.97 E-value=46 Score=15.44 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=9.0
Q ss_pred CCceecCCCCC
Q 035423 8 GDVIQCRECGY 18 (35)
Q Consensus 8 ~~~irC~~CG~ 18 (35)
.+...|-.||.
T Consensus 4 ~~~~~CE~CG~ 14 (43)
T 2w0t_A 4 SEPAVCEMCGI 14 (43)
T ss_dssp CCEEECTTTCC
T ss_pred CceehhhhhcC
Confidence 45689999996
No 389
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=21.87 E-value=1e+02 Score=20.67 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=17.9
Q ss_pred ceecCCCCCeEEEeecCCceEEEEe
Q 035423 10 VIQCRECGYRILYKKRTRRIVQYEA 34 (35)
Q Consensus 10 ~irC~~CG~RIlyK~R~~~~~~~~A 34 (35)
...|++||..++...+.-+++.++.
T Consensus 6 ~~~~~~cg~~~~v~v~dg~vv~v~g 30 (875)
T 1ti6_A 6 RLTNSSTGGPVFVYVKDGKIIRMTP 30 (875)
T ss_dssp EEEECCTTCCEEEEEETTEEEEEEC
T ss_pred eeeccCcCCCeEEEEECCEEEEEeC
Confidence 3578999998866666666666653
No 390
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.60 E-value=37 Score=12.18 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=7.6
Q ss_pred ceecC--CCCCe
Q 035423 10 VIQCR--ECGYR 19 (35)
Q Consensus 10 ~irC~--~CG~R 19 (35)
+..|+ .||..
T Consensus 3 ~~~C~~~~C~k~ 14 (32)
T 1zfd_A 3 PYSCDHPGCDKA 14 (32)
T ss_dssp SBCCCCTTCCCC
T ss_pred CCcCcCCCCCCc
Confidence 46798 89975
No 391
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=21.53 E-value=32 Score=20.02 Aligned_cols=10 Identities=40% Similarity=1.275 Sum_probs=8.1
Q ss_pred CceecCCCCC
Q 035423 9 DVIQCRECGY 18 (35)
Q Consensus 9 ~~irC~~CG~ 18 (35)
+.-+||.||.
T Consensus 146 ~~p~C~~Cgg 155 (253)
T 1ma3_A 146 EIPRCRKCGS 155 (253)
T ss_dssp CCCCCTTTCC
T ss_pred CCCCCCCCCC
Confidence 4569999998
No 392
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.48 E-value=38 Score=15.33 Aligned_cols=14 Identities=29% Similarity=0.703 Sum_probs=10.2
Q ss_pred CCceecCCCCCeEE
Q 035423 8 GDVIQCRECGYRIL 21 (35)
Q Consensus 8 ~~~irC~~CG~RIl 21 (35)
+...+|..|+..|.
T Consensus 3 ~~~~~C~~C~~~I~ 16 (70)
T 2d8x_A 3 SGSSGCHQCGEFII 16 (70)
T ss_dssp CCSSBCSSSCCBCC
T ss_pred CCCCcCccCCCEec
Confidence 34567889988774
No 393
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.41 E-value=43 Score=16.23 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=9.4
Q ss_pred CCceecCCCCCe
Q 035423 8 GDVIQCRECGYR 19 (35)
Q Consensus 8 ~~~irC~~CG~R 19 (35)
..+..|+.||..
T Consensus 23 ~kpy~C~~C~k~ 34 (88)
T 1x6f_A 23 NSTYQCKHCDSK 34 (88)
T ss_dssp CSCEECSSSCCE
T ss_pred CCCCcCCCCCCE
Confidence 346889999976
No 394
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.38 E-value=32 Score=15.41 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=6.5
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
...||.|+..|
T Consensus 50 ~~~CP~Cr~~~ 60 (66)
T 2ecy_A 50 SPKCTACQESI 60 (66)
T ss_dssp SCCCTTTCCCC
T ss_pred cCCCCCCCcCC
Confidence 44677776553
No 395
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=21.32 E-value=41 Score=22.82 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=11.8
Q ss_pred CceecCCCCCeE-EE
Q 035423 9 DVIQCRECGYRI-LY 22 (35)
Q Consensus 9 ~~irC~~CG~RI-ly 22 (35)
.++-||.||=++ ++
T Consensus 88 qp~aCp~CGP~l~~l 102 (657)
T 3ttc_A 88 QPVACPECGPYLEWV 102 (657)
T ss_dssp TTCCCTTTSCCEEEE
T ss_pred CCCcCcccCccceEe
Confidence 579999999998 54
No 396
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=21.31 E-value=52 Score=19.15 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=10.1
Q ss_pred CCceecCCCCCeE
Q 035423 8 GDVIQCRECGYRI 20 (35)
Q Consensus 8 ~~~irC~~CG~RI 20 (35)
....||.||+.-+
T Consensus 141 ~~~lrC~YCe~~~ 153 (168)
T 1pg5_B 141 PLKMRCEYCETII 153 (168)
T ss_dssp TTEEEETTTCCEE
T ss_pred CCEEEeeCCCCEe
Confidence 4458999999764
No 397
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.30 E-value=28 Score=16.99 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=8.4
Q ss_pred ceecCCCCCeE
Q 035423 10 VIQCRECGYRI 20 (35)
Q Consensus 10 ~irC~~CG~RI 20 (35)
...||.|+..+
T Consensus 58 ~~~CP~Cr~~~ 68 (112)
T 1jm7_A 58 PSQCPLCKNDI 68 (112)
T ss_dssp SCCCTTTSCCC
T ss_pred CCCCcCCCCcC
Confidence 46899998764
No 398
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=21.29 E-value=35 Score=20.84 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=8.5
Q ss_pred CceecCCCCCe
Q 035423 9 DVIQCRECGYR 19 (35)
Q Consensus 9 ~~irC~~CG~R 19 (35)
..-+||.||..
T Consensus 184 ~~P~C~~Cgg~ 194 (323)
T 1j8f_A 184 VTPKCEDCQSL 194 (323)
T ss_dssp CCCBCTTTCCB
T ss_pred CCCCCcCCCCc
Confidence 34599999975
No 399
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=21.11 E-value=35 Score=17.67 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=8.2
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
.+.|+.|+..
T Consensus 14 ~~~c~~c~~~ 23 (155)
T 2ppt_A 14 RLTCLACGQA 23 (155)
T ss_dssp EEECTTTCCE
T ss_pred eEECcccccc
Confidence 4899999864
No 400
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=20.93 E-value=39 Score=22.99 Aligned_cols=13 Identities=15% Similarity=0.549 Sum_probs=9.6
Q ss_pred CCCceecCCCCCe
Q 035423 7 PGDVIQCRECGYR 19 (35)
Q Consensus 7 ~~~~irC~~CG~R 19 (35)
..+++||..|+--
T Consensus 95 ~~~pvRC~rCray 107 (770)
T 3efo_B 95 ESGPVRCNRCKAY 107 (770)
T ss_dssp TTCSCBCTTTCCB
T ss_pred CCCCCccCCCCCC
Confidence 4568899999753
No 401
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=20.84 E-value=1.1e+02 Score=20.51 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=18.0
Q ss_pred ceecCCC--CCeEEEeecCCceEEEEe
Q 035423 10 VIQCREC--GYRILYKKRTRRIVQYEA 34 (35)
Q Consensus 10 ~irC~~C--G~RIlyK~R~~~~~~~~A 34 (35)
.--|++| |+.|....|..+++.++.
T Consensus 253 ~s~C~~C~~gC~i~v~v~~g~v~rv~~ 279 (783)
T 3i9v_3 253 PTTCALCPVGCGITADTRSGELLRIRA 279 (783)
T ss_dssp EEECCSSSSCCEEEEEEETBEEEEEEE
T ss_pred EEeCCCCCCcccceeeeECCEEEeccC
Confidence 3468888 467888887777777664
No 402
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.65 E-value=34 Score=15.59 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=9.1
Q ss_pred CceecCCCCCeEE
Q 035423 9 DVIQCRECGYRIL 21 (35)
Q Consensus 9 ~~irC~~CG~RIl 21 (35)
...+|..|+..|.
T Consensus 4 ~~~~C~~C~~~I~ 16 (72)
T 1x4l_A 4 GSSGCAGCTNPIS 16 (72)
T ss_dssp CSCSBTTTTBCCC
T ss_pred CCCCCcCCCcccc
Confidence 3467888887764
No 403
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=20.46 E-value=45 Score=16.19 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=7.3
Q ss_pred ceecCCCCCe
Q 035423 10 VIQCRECGYR 19 (35)
Q Consensus 10 ~irC~~CG~R 19 (35)
+..|+.||..
T Consensus 74 ~~~C~~C~k~ 83 (129)
T 2wbt_A 74 QFVCPLCLMP 83 (129)
T ss_dssp SEECTTTCCE
T ss_pred CeECCCCCcc
Confidence 5678888865
No 404
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.33 E-value=35 Score=14.43 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=7.1
Q ss_pred eecCCCCCe
Q 035423 11 IQCRECGYR 19 (35)
Q Consensus 11 irC~~CG~R 19 (35)
-.|+.||+-
T Consensus 7 W~C~~C~~~ 15 (33)
T 2k1p_A 7 WQCKTCSNV 15 (33)
T ss_dssp CBCSSSCCB
T ss_pred cccCCCCCc
Confidence 679999864
No 405
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=20.07 E-value=35 Score=22.00 Aligned_cols=11 Identities=27% Similarity=0.975 Sum_probs=8.7
Q ss_pred CCceecCCCCC
Q 035423 8 GDVIQCRECGY 18 (35)
Q Consensus 8 ~~~irC~~CG~ 18 (35)
-+-|.||-||-
T Consensus 269 ~~~ISCPtCGR 279 (366)
T 3noy_A 269 VEIVACPTCGR 279 (366)
T ss_dssp CEEEECCCCTT
T ss_pred CEEEECCCCCC
Confidence 35689999994
Done!