BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035428
         (57 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
          Length = 732

 Score = 29.6 bits (65), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 7   VGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           V E +  ER  DAV  +L+M++  GG   +E +R    LE+
Sbjct: 474 VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLEL 514


>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
          Length = 732

 Score = 29.3 bits (64), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 7   VGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           V E +  ER  DAV  +L+M++  GG   +E +R    LE+
Sbjct: 474 VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLEL 514


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,828,491
Number of Sequences: 62578
Number of extensions: 53058
Number of successful extensions: 118
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 14,973,337
effective HSP length: 29
effective length of query: 28
effective length of database: 13,158,575
effective search space: 368440100
effective search space used: 368440100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)