Query 035428
Match_columns 57
No_of_seqs 107 out of 438
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02993 lupeol synthase 99.8 2.4E-20 5.2E-25 143.8 3.2 55 2-56 501-555 (763)
2 PLN03012 Camelliol C synthase 99.8 2.6E-20 5.7E-25 143.5 3.4 55 2-56 501-555 (759)
3 KOG0497 Oxidosqualene-lanoster 99.6 8.7E-17 1.9E-21 124.0 3.0 56 1-56 499-554 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 99.5 2E-15 4.4E-20 113.8 3.0 46 10-55 396-441 (634)
5 TIGR01787 squalene_cyclas squa 99.4 1.2E-13 2.6E-18 104.0 3.2 48 9-56 383-430 (621)
6 TIGR01507 hopene_cyclase squal 99.1 2.4E-11 5.2E-16 92.0 3.3 44 9-52 398-441 (635)
7 cd02892 SQCY_1 Squalene cyclas 99.1 2.4E-11 5.2E-16 91.1 2.7 48 8-55 394-441 (634)
8 TIGR02474 pec_lyase pectate ly 98.8 4.6E-09 1E-13 74.5 3.5 44 8-52 61-104 (290)
9 COG1657 SqhC Squalene cyclase 98.1 1.1E-06 2.3E-11 66.6 2.1 42 13-54 280-321 (517)
10 cd02889 SQCY Squalene cyclase 98.0 3.9E-06 8.4E-11 57.2 3.0 38 9-46 112-149 (348)
11 cd02891 A2M_like Proteins simi 98.0 7.3E-06 1.6E-10 54.3 3.0 35 13-47 48-83 (282)
12 PF13249 Prenyltrans_2: Prenyl 97.9 2.3E-06 5E-11 49.8 0.3 22 13-34 91-112 (113)
13 cd02897 A2M_2 Proteins similar 97.9 1.1E-05 2.4E-10 54.8 3.4 32 9-40 97-128 (292)
14 PF13249 Prenyltrans_2: Prenyl 97.7 1.7E-05 3.6E-10 46.2 1.8 17 20-36 1-17 (113)
15 PF00432 Prenyltrans: Prenyltr 97.6 6.7E-05 1.5E-09 39.1 2.6 22 16-37 3-24 (44)
16 PF13243 Prenyltrans_1: Prenyl 97.5 3.1E-05 6.8E-10 45.2 1.0 29 8-36 40-68 (109)
17 cd02896 complement_C3_C4_C5 Pr 97.4 0.00016 3.5E-09 49.8 2.8 29 10-38 99-127 (297)
18 cd02896 complement_C3_C4_C5 Pr 97.3 0.00029 6.2E-09 48.6 3.1 34 14-47 52-85 (297)
19 TIGR01507 hopene_cyclase squal 97.2 0.00026 5.6E-09 54.2 3.0 28 7-34 512-539 (635)
20 PLN03012 Camelliol C synthase 97.2 0.00025 5.4E-09 55.9 2.9 40 7-46 631-672 (759)
21 cd02897 A2M_2 Proteins similar 97.2 0.00031 6.7E-09 47.8 2.9 33 15-47 50-84 (292)
22 PLN02993 lupeol synthase 97.1 0.00043 9.2E-09 54.6 3.0 39 7-45 631-671 (763)
23 PF13243 Prenyltrans_1: Prenyl 97.0 0.00014 3.1E-09 42.4 0.0 19 16-34 1-19 (109)
24 cd02889 SQCY Squalene cyclase 97.0 0.00069 1.5E-08 46.2 3.1 24 12-35 295-318 (348)
25 cd00688 ISOPREN_C2_like This g 97.0 0.00081 1.8E-08 42.7 3.2 30 10-39 48-77 (300)
26 cd02890 PTase Protein prenyltr 97.0 0.00071 1.5E-08 45.7 2.8 33 5-37 38-71 (286)
27 TIGR03463 osq_cycl 2,3-oxidosq 96.9 0.00087 1.9E-08 51.3 3.0 29 7-35 518-546 (634)
28 TIGR01787 squalene_cyclas squa 96.6 0.0017 3.7E-08 49.5 2.9 27 8-34 502-529 (621)
29 cd00688 ISOPREN_C2_like This g 96.6 0.0025 5.5E-08 40.5 2.9 29 11-39 101-129 (300)
30 cd02892 SQCY_1 Squalene cyclas 96.4 0.0022 4.7E-08 48.7 2.2 36 6-41 38-73 (634)
31 PLN03201 RAB geranylgeranyl tr 96.0 0.0049 1.1E-07 43.4 2.3 24 15-38 57-80 (316)
32 PF09492 Pec_lyase: Pectic aci 95.9 0.0085 1.8E-07 42.8 3.0 30 13-42 61-90 (289)
33 cd02890 PTase Protein prenyltr 95.8 0.0073 1.6E-07 40.8 2.4 23 13-35 145-167 (286)
34 cd02893 FTase Protein farnesyl 95.7 0.01 2.2E-07 41.4 2.7 31 6-36 39-69 (299)
35 PF07678 A2M_comp: A-macroglob 95.4 0.013 2.7E-07 39.6 2.2 29 10-38 45-73 (246)
36 cd02893 FTase Protein farnesyl 95.3 0.017 3.8E-07 40.2 2.9 24 12-35 144-167 (299)
37 cd02894 GGTase-II Geranylgeran 95.3 0.014 3E-07 40.1 2.2 22 14-35 148-169 (287)
38 cd02894 GGTase-II Geranylgeran 94.9 0.023 4.9E-07 39.1 2.5 21 15-35 101-121 (287)
39 PF07678 A2M_comp: A-macroglob 94.8 0.021 4.6E-07 38.5 2.1 29 19-47 2-31 (246)
40 PLN03201 RAB geranylgeranyl tr 94.6 0.035 7.7E-07 39.1 2.9 22 14-35 152-173 (316)
41 PLN02710 farnesyltranstransfer 94.5 0.035 7.7E-07 41.5 2.8 33 5-37 83-115 (439)
42 cd02891 A2M_like Proteins simi 94.4 0.051 1.1E-06 35.9 3.1 31 10-40 97-127 (282)
43 KOG0497 Oxidosqualene-lanoster 94.0 0.04 8.6E-07 43.9 2.3 23 14-36 638-660 (760)
44 cd02895 GGTase-I Geranylgerany 93.7 0.058 1.2E-06 37.9 2.4 22 16-37 114-135 (307)
45 KOG0366 Protein geranylgeranyl 93.3 0.072 1.6E-06 38.8 2.5 22 17-38 69-90 (329)
46 COG1689 Uncharacterized protei 93.1 0.049 1.1E-06 38.9 1.4 20 15-34 229-248 (274)
47 PLN02710 farnesyltranstransfer 93.0 0.095 2.1E-06 39.3 2.7 26 11-36 188-213 (439)
48 COG5029 CAL1 Prenyltransferase 92.8 0.079 1.7E-06 39.0 2.0 27 10-36 170-196 (342)
49 cd02895 GGTase-I Geranylgerany 90.5 0.3 6.4E-06 34.3 2.9 26 12-37 47-76 (307)
50 KOG0366 Protein geranylgeranyl 90.0 0.21 4.5E-06 36.5 1.8 26 11-36 159-184 (329)
51 KOG0365 Beta subunit of farnes 88.2 0.49 1.1E-05 35.7 2.7 31 5-35 111-141 (423)
52 COG2373 Large extracellular al 87.5 0.55 1.2E-05 40.2 3.0 35 12-46 1197-1232(1621)
53 KOG3760 Heparan sulfate-glucur 83.9 0.82 1.8E-05 35.4 2.1 22 14-35 380-401 (594)
54 PF15144 DUF4576: Domain of un 82.1 2 4.4E-05 26.2 3.0 31 12-42 54-84 (88)
55 COG1657 SqhC Squalene cyclase 80.8 0.7 1.5E-05 35.6 0.8 23 13-35 351-373 (517)
56 cd04447 DEP_BRCC3 DEP (Disheve 79.3 1.2 2.7E-05 27.3 1.4 25 17-42 33-57 (92)
57 PLN02592 ent-copalyl diphospha 76.9 1.7 3.7E-05 35.0 1.9 21 15-35 116-136 (800)
58 PLN02279 ent-kaur-16-ene synth 75.1 2 4.4E-05 34.4 1.8 21 16-36 75-95 (784)
59 TIGR02474 pec_lyase pectate ly 73.8 3.3 7.1E-05 29.8 2.5 20 13-32 136-155 (290)
60 PF00759 Glyco_hydro_9: Glycos 73.4 3 6.4E-05 29.8 2.2 18 15-32 99-116 (444)
61 KOG0365 Beta subunit of farnes 63.7 5.9 0.00013 30.0 2.1 29 6-35 212-240 (423)
62 KOG0367 Protein geranylgeranyl 61.0 5.4 0.00012 29.6 1.5 20 16-35 230-249 (347)
63 PLN02345 endoglucanase 59.7 8 0.00017 29.3 2.3 19 15-33 87-105 (469)
64 COG1331 Highly conserved prote 59.2 10 0.00022 30.3 2.8 43 5-47 174-217 (667)
65 cd04446 DEP_DEPDC4 DEP (Dishev 58.3 7.1 0.00015 23.8 1.5 14 17-30 31-46 (95)
66 PLN02266 endoglucanase 54.3 11 0.00024 28.9 2.3 20 14-33 134-153 (510)
67 PLN02308 endoglucanase 53.9 12 0.00026 28.6 2.3 20 14-33 116-135 (492)
68 PLN02909 Endoglucanase 53.8 12 0.00025 28.7 2.3 20 14-33 124-143 (486)
69 PF03677 UPF0137: Uncharacteri 52.8 9.8 0.00021 27.1 1.6 27 11-37 83-109 (243)
70 PF00010 HLH: Helix-loop-helix 52.5 21 0.00045 18.5 2.6 15 13-27 41-55 (55)
71 COG0735 Fur Fe2+/Zn2+ uptake r 49.7 25 0.00055 22.2 3.1 35 8-42 50-89 (145)
72 cd04794 euk_LANCL eukaryotic L 47.2 29 0.00062 24.1 3.3 32 8-39 182-213 (343)
73 PF00573 Ribosomal_L4: Ribosom 47.1 29 0.00064 23.0 3.2 26 2-27 3-28 (192)
74 PF02319 E2F_TDP: E2F/DP famil 46.6 18 0.0004 20.3 1.9 15 12-26 42-56 (71)
75 PF09492 Pec_lyase: Pectic aci 46.5 17 0.00038 26.1 2.1 23 13-35 131-157 (289)
76 PRK13697 cytochrome c6; Provis 46.4 29 0.00063 20.1 2.8 19 8-26 87-105 (111)
77 PLN03009 cellulase 46.2 17 0.00037 27.7 2.2 19 15-33 118-136 (495)
78 KOG2829 E2F-like protein [Tran 45.9 17 0.00038 26.8 2.1 14 13-26 98-111 (326)
79 PF02757 YLP: YLP motif; Inte 45.8 9.2 0.0002 14.5 0.4 7 46-52 3-9 (9)
80 KOG0367 Protein geranylgeranyl 42.9 21 0.00045 26.6 2.1 21 16-36 176-196 (347)
81 COG5029 CAL1 Prenyltransferase 40.8 21 0.00046 26.5 1.9 18 18-35 130-147 (342)
82 TIGR03872 cytochrome_MoxG cyto 40.6 55 0.0012 20.6 3.6 27 8-34 103-129 (133)
83 KOG1366 Alpha-macroglobulin [P 40.1 23 0.00051 30.5 2.2 24 11-34 1021-1044(1436)
84 PLN02613 endoglucanase 38.6 29 0.00062 26.6 2.3 20 14-33 116-135 (498)
85 PF14577 SEO_C: Sieve element 37.2 32 0.00068 24.2 2.2 32 8-39 119-150 (235)
86 cd00194 UBA Ubiquitin Associat 35.0 28 0.0006 16.6 1.3 10 16-25 29-38 (38)
87 PLN00119 endoglucanase 34.3 36 0.00079 26.0 2.3 20 14-33 121-140 (489)
88 TIGR01577 oligosac_amyl oligos 33.2 44 0.00095 25.5 2.6 21 13-33 313-333 (616)
89 PRK10353 3-methyl-adenine DNA 31.5 22 0.00047 24.1 0.7 33 5-37 84-116 (187)
90 PF06236 MelC1: Tyrosinase co- 31.3 17 0.00036 23.5 0.1 11 25-35 82-92 (125)
91 PF14394 DUF4423: Domain of un 31.1 62 0.0013 21.1 2.8 27 9-35 51-81 (171)
92 PF09373 PMBR: Pseudomurein-bi 30.6 69 0.0015 15.5 2.3 28 9-36 3-30 (33)
93 PF07944 DUF1680: Putative gly 30.3 37 0.0008 25.4 1.8 33 8-40 77-109 (520)
94 PF03352 Adenine_glyco: Methyl 29.2 30 0.00064 23.2 1.0 34 4-37 78-111 (179)
95 PLN02171 endoglucanase 29.0 48 0.0011 26.2 2.3 20 14-33 120-139 (629)
96 PRK12742 oxidoreductase; Provi 27.9 72 0.0016 20.0 2.6 22 8-29 201-222 (237)
97 cd04449 DEP_DEPDC5-like DEP (D 27.8 43 0.00094 19.2 1.4 9 17-25 33-41 (83)
98 KOG1366 Alpha-macroglobulin [P 27.5 45 0.00097 28.9 2.0 32 16-47 973-1006(1436)
99 PF00610 DEP: Domain found in 27.1 45 0.00097 18.0 1.4 9 17-25 21-29 (74)
100 PF02845 CUE: CUE domain; Int 26.9 61 0.0013 16.1 1.8 13 15-27 30-42 (42)
101 COG3120 Uncharacterized protei 26.9 27 0.00059 23.1 0.5 19 11-29 32-50 (149)
102 TIGR02147 Fsuc_second hypothet 26.7 71 0.0015 22.5 2.6 30 6-35 146-179 (271)
103 PRK09979 putative rho operon l 26.4 29 0.00062 17.5 0.4 10 47-56 10-19 (33)
104 PF07470 Glyco_hydro_88: Glyco 26.2 63 0.0014 22.3 2.2 21 15-35 216-236 (336)
105 cd00083 HLH Helix-loop-helix d 26.1 56 0.0012 16.7 1.6 17 13-29 42-58 (60)
106 smart00049 DEP Domain found in 26.0 49 0.0011 18.0 1.4 12 17-28 24-35 (77)
107 PF07120 DUF1376: Protein of u 25.7 1E+02 0.0022 17.7 2.8 24 11-34 52-77 (88)
108 COG5072 ALK1 Serine/threonine 25.7 28 0.00062 26.9 0.5 29 15-48 397-425 (488)
109 COG1689 Uncharacterized protei 25.5 88 0.0019 22.6 2.9 26 14-39 6-31 (274)
110 smart00165 UBA Ubiquitin assoc 25.4 40 0.00086 16.0 0.9 9 16-24 29-37 (37)
111 TIGR00423 radical SAM domain p 24.9 84 0.0018 21.7 2.7 33 6-38 166-198 (309)
112 cd04371 DEP DEP domain, named 24.1 58 0.0013 17.7 1.5 12 17-28 32-43 (81)
113 PF08853 DUF1823: Domain of un 23.9 48 0.001 21.2 1.2 10 17-26 103-112 (116)
114 PF00034 Cytochrom_C: Cytochro 23.8 1.1E+02 0.0023 15.8 2.5 17 10-26 74-90 (91)
115 PF03759 PRONE: PRONE (Plant-s 23.5 80 0.0017 23.8 2.5 18 9-26 53-73 (365)
116 TIGR03551 F420_cofH 7,8-dideme 23.5 69 0.0015 22.5 2.1 35 6-40 200-234 (343)
117 KOG3438 DNA-directed RNA polym 23.5 50 0.0011 20.8 1.2 25 12-37 25-49 (105)
118 PF03711 OKR_DC_1_C: Orn/Lys/A 23.3 33 0.00071 21.9 0.4 34 6-40 93-126 (136)
119 COG4277 Predicted DNA-binding 23.3 70 0.0015 24.2 2.1 19 8-27 269-287 (404)
120 PF04157 EAP30: EAP30/Vps36 fa 23.2 25 0.00055 23.4 -0.2 35 18-55 98-140 (223)
121 PF10036 RLL: Putative carniti 23.2 80 0.0017 21.8 2.3 20 7-26 67-86 (249)
122 PLN02175 endoglucanase 23.0 74 0.0016 24.4 2.3 17 16-32 114-131 (484)
123 cd04442 DEP_1_DEP6 DEP (Dishev 22.3 57 0.0012 19.2 1.3 9 17-25 32-40 (82)
124 PF13768 VWA_3: von Willebrand 21.6 85 0.0018 18.8 2.0 23 10-32 55-77 (155)
125 cd00782 MutL_Trans MutL_Trans: 21.6 1.1E+02 0.0023 18.0 2.4 29 8-36 52-80 (122)
126 PF01591 6PF2K: 6-phosphofruct 21.5 91 0.002 21.3 2.3 27 13-42 81-107 (222)
127 PLN02420 endoglucanase 21.5 87 0.0019 24.3 2.4 19 14-32 131-149 (525)
128 PF14836 Ubiquitin_3: Ubiquiti 21.4 3.4 7.3E-05 25.1 -4.2 24 11-34 64-87 (88)
129 PF00627 UBA: UBA/TS-N domain; 21.2 73 0.0016 15.4 1.4 8 16-23 30-37 (37)
130 PF06376 DUF1070: Protein of u 21.0 86 0.0019 16.0 1.6 16 11-26 9-24 (34)
131 PRK08445 hypothetical protein; 20.7 1E+02 0.0023 22.0 2.5 32 6-37 203-234 (348)
132 PF08821 CGGC: CGGC domain; I 20.7 61 0.0013 19.8 1.2 21 18-38 15-35 (107)
133 PF08302 tRNA_lig_CPD: Fungal 20.6 95 0.0021 21.6 2.2 26 2-27 16-42 (257)
134 cd04448 DEP_PIKfyve DEP (Dishe 20.5 72 0.0016 18.4 1.4 10 17-26 32-41 (81)
135 KOG0665 Jun-N-terminal kinase 20.4 17 0.00038 27.2 -1.5 18 13-30 179-196 (369)
136 PF01122 Cobalamin_bind: Eukar 20.3 1.1E+02 0.0024 22.4 2.6 20 15-34 216-235 (326)
137 COG3533 Uncharacterized protei 20.3 83 0.0018 25.0 2.1 30 8-37 83-112 (589)
138 smart00501 BRIGHT BRIGHT, ARID 20.0 91 0.002 17.8 1.8 27 2-35 23-49 (93)
No 1
>PLN02993 lupeol synthase
Probab=99.80 E-value=2.4e-20 Score=143.75 Aligned_cols=55 Identities=51% Similarity=1.002 Sum_probs=52.3
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS 56 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~ 56 (57)
+|++++|+++.+++|+|||||||+|||+||||+|||++|++.|||+|||+|+|+.
T Consensus 501 ~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~ 555 (763)
T PLN02993 501 MPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFAN 555 (763)
T ss_pred CccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcC
Confidence 5678899999999999999999999999999999999999999999999999864
No 2
>PLN03012 Camelliol C synthase
Probab=99.80 E-value=2.6e-20 Score=143.53 Aligned_cols=55 Identities=47% Similarity=0.868 Sum_probs=52.5
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS 56 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~ 56 (57)
++++++|++++++|++|||||||+|||+||||+|||++|++.|||+|||+|+|..
T Consensus 501 ~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d 555 (759)
T PLN03012 501 IAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFAD 555 (759)
T ss_pred cccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcC
Confidence 5678899999999999999999999999999999999999999999999999974
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.64 E-value=8.7e-17 Score=123.99 Aligned_cols=56 Identities=50% Similarity=0.808 Sum_probs=54.0
Q ss_pred CCCccccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428 1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS 56 (57)
Q Consensus 1 ~~~~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~ 56 (57)
+||.++||++|++|||+||||.||+||+++||+++||+.|+..|||+|||+|+|..
T Consensus 499 ~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~ 554 (760)
T KOG0497|consen 499 SMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGD 554 (760)
T ss_pred CCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccc
Confidence 58999999999999999999999999999999999999999999999999999964
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.55 E-value=2e-15 Score=113.82 Aligned_cols=46 Identities=37% Similarity=0.550 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCcccccc
Q 035428 10 KMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTK 55 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~ 55 (57)
+++++++++||+|||+|||+||||++||+++++.|||+|||+|+|.
T Consensus 396 ~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~ 441 (634)
T TIGR03463 396 RVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFS 441 (634)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhc
Confidence 4778999999999999999999999999999999999999999986
No 5
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.41 E-value=1.2e-13 Score=104.02 Aligned_cols=48 Identities=40% Similarity=0.674 Sum_probs=45.0
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428 9 EKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS 56 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~ 56 (57)
+++..+++++||+||++|||+||||++||++++..|||+|||+|+|..
T Consensus 383 ~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d 430 (621)
T TIGR01787 383 EHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGD 430 (621)
T ss_pred ccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhcc
Confidence 567889999999999999999999999999999999999999999864
No 6
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.15 E-value=2.4e-11 Score=92.05 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccc
Q 035428 9 EKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST 52 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae 52 (57)
++...+++.+||+|||+|||+||||++||++++..|++++|.+.
T Consensus 398 ~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d 441 (635)
T TIGR01507 398 ERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCD 441 (635)
T ss_pred cccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccc
Confidence 34556899999999999999999999999999999999999764
No 7
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.13 E-value=2.4e-11 Score=91.08 Aligned_cols=48 Identities=42% Similarity=0.687 Sum_probs=44.3
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCcccccc
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTK 55 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~ 55 (57)
|..+..+++.+||+||++|||+||||++||+.++..|++.++|+|+|.
T Consensus 394 ~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g 441 (634)
T cd02892 394 GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFG 441 (634)
T ss_pred chhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhc
Confidence 355778999999999999999999999999999999999999999885
No 8
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.79 E-value=4.6e-09 Score=74.54 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=37.7
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccc
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST 52 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae 52 (57)
+++.-.+++.+||+|||+||++||||+.|++.++ .|+++|...+
T Consensus 61 ~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~ITfND 104 (290)
T TIGR02474 61 KNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAITYND 104 (290)
T ss_pred CchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-CcccccccCc
Confidence 4566678999999999999999999999999887 7888776543
No 9
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.15 E-value=1.1e-06 Score=66.58 Aligned_cols=42 Identities=24% Similarity=0.488 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccc
Q 035428 13 PERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYT 54 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f 54 (57)
..++..+++|+++|||+.|||++||..+...|++.||+++++
T Consensus 280 ~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~ 321 (517)
T COG1657 280 LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVK 321 (517)
T ss_pred hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcc
Confidence 346777999999999999999999999999999999999886
No 10
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=98.04 E-value=3.9e-06 Score=57.20 Aligned_cols=38 Identities=47% Similarity=0.858 Sum_probs=33.1
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428 9 EKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le 46 (57)
..+..+.+.+|++||++.|++||||.+|++.++..|++
T Consensus 112 ~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~ 149 (348)
T cd02889 112 KKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLE 149 (348)
T ss_pred chhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHh
Confidence 45678899999999999999999999999887777754
No 11
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=97.96 E-value=7.3e-06 Score=54.28 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccccCC-CCcccccc
Q 035428 13 PERFYDAVNYILSMQSETGGVPAWEPR-RAPSWLEV 47 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~aafE~~-r~~~~Le~ 47 (57)
.+++.+|+++|++|||+||||+.|... .+..|+..
T Consensus 48 ~~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta 83 (282)
T cd02891 48 LEYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTA 83 (282)
T ss_pred HHHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHH
Confidence 467999999999999999999999876 77888653
No 12
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=97.93 E-value=2.3e-06 Score=49.83 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCcc
Q 035428 13 PERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~a 34 (57)
.+.+.+||+||+++||+||||+
T Consensus 91 ~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 91 EEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HTTHCCHHHHHHHTB-TTSSB-
T ss_pred cHHHHHHHHHHHHhcCCCCCCC
Confidence 4678899999999999999996
No 13
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=97.91 E-value=1.1e-05 Score=54.84 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=28.0
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCcccccCCC
Q 035428 9 EKMEPERFYDAVNYILSMQSETGGVPAWEPRR 40 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r 40 (57)
..++++.+.+|++||+++|++||||+++++..
T Consensus 97 ~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~ 128 (292)
T cd02897 97 IYIDENVLQQALTWLSSHQKSNGCFREVGRVF 128 (292)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 35778899999999999999999999887643
No 14
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=97.74 E-value=1.7e-05 Score=46.15 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=15.3
Q ss_pred HHHHHHhhcCCCCcccc
Q 035428 20 VNYILSMQSETGGVPAW 36 (57)
Q Consensus 20 Vd~lLsmQN~dGG~aaf 36 (57)
|+||++.||+||||+.+
T Consensus 1 v~~L~~~Q~~dGgw~~~ 17 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF 17 (113)
T ss_dssp HHHHHHHB-TTSSBBSS
T ss_pred CHhhHHHcCCCCCCcCC
Confidence 79999999999999986
No 15
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=97.59 E-value=6.7e-05 Score=39.11 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhcCCCCccccc
Q 035428 16 FYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aafE 37 (57)
..++++||++-|+.||||+..-
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~ 24 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRP 24 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSST
T ss_pred HHHHHHHHHHHCCCCCCCCCCC
Confidence 4679999999999999999763
No 16
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=97.55 E-value=3.1e-05 Score=45.20 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=18.1
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
++.-..+++.+|++||++.|++||||+-.
T Consensus 40 ~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 40 GDAAVDEAIKKAIDWLLSHQNPDGGWGYS 68 (109)
T ss_dssp -TS-SSBSSHHHHHHHHH---TTS--S-T
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 44456678999999999999999999955
No 17
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=97.36 E-value=0.00016 Score=49.83 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=25.9
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCcccccC
Q 035428 10 KMEPERFYDAVNYILSMQSETGGVPAWEP 38 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~ 38 (57)
.++++.|.+|++||+++|++||+|....+
T Consensus 99 ~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~ 127 (297)
T cd02896 99 PVDQNVICGSVNWLISNQKPDGSFQEPSP 127 (297)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCeeCCCCC
Confidence 57889999999999999999999997543
No 18
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=97.25 E-value=0.00029 Score=48.60 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~ 47 (57)
+.|.+|+.-+++||+.||||++|....+..||.-
T Consensus 52 ~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA 85 (297)
T cd02896 52 KYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTA 85 (297)
T ss_pred HHHHHHHHHHHhccCCCCCccCCCCCCcchhhHH
Confidence 4599999999999999999999988888888653
No 19
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=97.23 E-value=0.00026 Score=54.20 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.5
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCCcc
Q 035428 7 VGEKMEPERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 7 ~g~~i~~~rl~daVd~lLsmQN~dGG~a 34 (57)
+|.....+.+.+||+||++.||+||||+
T Consensus 512 ~g~~~~~~~i~rAv~wL~~~Q~~DGGWg 539 (635)
T TIGR01507 512 VGIDTREPYIQKALAWLESHQNPDGGWG 539 (635)
T ss_pred cCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 3555667899999999999999999997
No 20
>PLN03012 Camelliol C synthase
Probab=97.23 E-value=0.00025 Score=55.87 Aligned_cols=40 Identities=18% Similarity=0.398 Sum_probs=29.4
Q ss_pred cCCCCCh-HHHHHHHHHHHHhhcCCCCccc-ccCCCCccccc
Q 035428 7 VGEKMEP-ERFYDAVNYILSMQSETGGVPA-WEPRRAPSWLE 46 (57)
Q Consensus 7 ~g~~i~~-~rl~daVd~lLsmQN~dGG~aa-fE~~r~~~~Le 46 (57)
+|+.... +++.+||+||++.||+||||+- |..-.++.|..
T Consensus 631 ~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~ 672 (759)
T PLN03012 631 AGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA 672 (759)
T ss_pred hCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC
Confidence 4555444 8999999999999999999984 55444444443
No 21
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=97.21 E-value=0.00031 Score=47.76 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhcCCCCcccccCC--CCcccccc
Q 035428 15 RFYDAVNYILSMQSETGGVPAWEPR--RAPSWLEV 47 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aafE~~--r~~~~Le~ 47 (57)
.|.+++..+++||+.||||+.|-.. .+..||.-
T Consensus 50 ~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa 84 (292)
T cd02897 50 FLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTA 84 (292)
T ss_pred HHHHHHHHHHhccCCCCCeecccCCCCCcchhhHH
Confidence 3888889999999999999999543 66777753
No 22
>PLN02993 lupeol synthase
Probab=97.10 E-value=0.00043 Score=54.58 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=28.1
Q ss_pred cCCCCCh-HHHHHHHHHHHHhhcCCCCccc-ccCCCCcccc
Q 035428 7 VGEKMEP-ERFYDAVNYILSMQSETGGVPA-WEPRRAPSWL 45 (57)
Q Consensus 7 ~g~~i~~-~rl~daVd~lLsmQN~dGG~aa-fE~~r~~~~L 45 (57)
+|+..+. +.+.+||+|||+.||+||||+. |....++.+.
T Consensus 631 ~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~ 671 (763)
T PLN02993 631 AGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYI 671 (763)
T ss_pred cCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccc
Confidence 4555444 7899999999999999999973 4433333333
No 23
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=97.05 E-value=0.00014 Score=42.39 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCcc
Q 035428 16 FYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~a 34 (57)
|.+||+||++-|++||||.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~ 19 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWG 19 (109)
T ss_dssp -------------------
T ss_pred Ccccccccccccccccccc
Confidence 5689999999999999995
No 24
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=97.01 E-value=0.00069 Score=46.18 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCccc
Q 035428 12 EPERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQN~dGG~aa 35 (57)
..+.+.+|++||++.||.||||.+
T Consensus 295 ~~~~v~~a~~wL~~~Q~~dG~f~~ 318 (348)
T cd02889 295 DSEAVKRGVKYLLNTQQEDGDWPQ 318 (348)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcCC
Confidence 567899999999999999999987
No 25
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=97.01 E-value=0.00081 Score=42.74 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428 10 KMEPERFYDAVNYILSMQSETGGVPAWEPR 39 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~~ 39 (57)
....+.+.++++||+++|+.||||+.+...
T Consensus 48 ~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~ 77 (300)
T cd00688 48 DKADENIEKGIQRLLSYQLSDGGFSGWGGN 77 (300)
T ss_pred ccchHHHHHHHHHHHhccCCCCCccCCCCC
Confidence 345678999999999999999999988654
No 26
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=96.97 E-value=0.00071 Score=45.69 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=29.2
Q ss_pred cccCCCCChHHHHHHHHHHHHhh-cCCCCccccc
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQ-SETGGVPAWE 37 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQ-N~dGG~aafE 37 (57)
.++|..++.+...++++||+++| |+||||+...
T Consensus 38 ~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~ 71 (286)
T cd02890 38 DLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGP 71 (286)
T ss_pred HHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 45677788899999999999999 9999999874
No 27
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=96.88 E-value=0.00087 Score=51.29 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.2
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428 7 VGEKMEPERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 7 ~g~~i~~~rl~daVd~lLsmQN~dGG~aa 35 (57)
+|.....+.+.+||+||++-||+||||+.
T Consensus 518 ~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~ 546 (634)
T TIGR03463 518 AGASPDDMALQRAAAWLRSYQRADGGWGE 546 (634)
T ss_pred cCCCcCcHHHHHHHHHHHHccCCCCCccC
Confidence 46666778999999999999999999963
No 28
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=96.62 E-value=0.0017 Score=49.53 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.5
Q ss_pred CCCCCh-HHHHHHHHHHHHhhcCCCCcc
Q 035428 8 GEKMEP-ERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 8 g~~i~~-~rl~daVd~lLsmQN~dGG~a 34 (57)
|+.... +.+.+|++||++.||+||||+
T Consensus 502 G~~~~~~~~i~rA~~~L~~~Q~~DGGWg 529 (621)
T TIGR01787 502 GRTYRNCPEVQKACDWLLSRQMPDGGWG 529 (621)
T ss_pred CCcccCCHHHHHHHHHHHhhcCCCCCCC
Confidence 444333 789999999999999999997
No 29
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=96.55 E-value=0.0025 Score=40.47 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428 11 MEPERFYDAVNYILSMQSETGGVPAWEPR 39 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~dGG~aafE~~ 39 (57)
+..+.+.++++||++.|+.||||..+...
T Consensus 101 ~~~~~~~~~~~~l~~~q~~dG~~~~~~~~ 129 (300)
T cd00688 101 VDRIDLARALNWLLSLQNEDGGFREDGPG 129 (300)
T ss_pred cCHHHHHHHHHHHHHccCCCCCeeeecCC
Confidence 66788999999999999999999988754
No 30
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=96.40 E-value=0.0022 Score=48.66 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=29.6
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCC
Q 035428 6 IVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRA 41 (57)
Q Consensus 6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~ 41 (57)
++|..++++...+.++||++.||+||||+-|....+
T Consensus 38 ~~~~~~~~~~~~~~~~~l~~~q~~dGgw~~~~~~~~ 73 (634)
T cd02892 38 ILGIPIDPEHRKEIARYLRNHQNPDGGWGLHHEGPS 73 (634)
T ss_pred HhcCCCCHHHHHHHHHHHHHhccCCCCccCCCCCCc
Confidence 356666788888999999999999999999874433
No 31
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=96.01 E-value=0.0049 Score=43.44 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhcCCCCcccccC
Q 035428 15 RFYDAVNYILSMQSETGGVPAWEP 38 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aafE~ 38 (57)
...++++||+++|+++|||++++.
T Consensus 57 ~~~~~i~~l~~cq~~~GGF~~~~~ 80 (316)
T PLN03201 57 DRDEVVSWVMRCQHESGGFGGNTG 80 (316)
T ss_pred cHHHHHHHHHHhcCCCCCcCCCCC
Confidence 347899999999999999999864
No 32
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=95.88 E-value=0.0085 Score=42.81 Aligned_cols=30 Identities=33% Similarity=0.631 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccccCCCCc
Q 035428 13 PERFYDAVNYILSMQSETGGVPAWEPRRAP 42 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~aafE~~r~~ 42 (57)
.+++.+||++||..|-+||||+=|=+.++.
T Consensus 61 ~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~ 90 (289)
T PF09492_consen 61 REAFLKGLDYLLKAQYPNGGWPQFYPLRGG 90 (289)
T ss_dssp HHHHHHHHHHHHHHS-TTS--BSECS--SG
T ss_pred HHHHHHHHHHHHHhhCCCCCCCccCCCCCC
Confidence 467899999999999999999998776655
No 33
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=95.83 E-value=0.0073 Score=40.77 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCccc
Q 035428 13 PERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~aa 35 (57)
.....++++||+++||.||||+.
T Consensus 145 ~~~~~~~~~~l~~~Q~~dGGf~~ 167 (286)
T cd02890 145 DIDKEKLIDYILSCQNYDGGFGG 167 (286)
T ss_pred hhhHHHHHHHHHHhCCCCCCcCC
Confidence 45688999999999999999985
No 34
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=95.66 E-value=0.01 Score=41.41 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=25.8
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 6 IVGEKMEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
++|..+......+.++||+++|+++|||+.-
T Consensus 39 lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~ 69 (299)
T cd02893 39 LLGEELDQSYADDVISFLRRCQNPSGGFGGG 69 (299)
T ss_pred HhCCcccHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4566566666789999999999999999984
No 35
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=95.36 E-value=0.013 Score=39.57 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCcccccC
Q 035428 10 KMEPERFYDAVNYILSMQSETGGVPAWEP 38 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~ 38 (57)
.|+++-|.+|++||++-|++||.|..-.+
T Consensus 45 ~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~ 73 (246)
T PF07678_consen 45 FVDENVICRAVKWLISQQQPDGSFEEDGP 73 (246)
T ss_dssp -CEHHHHHHHHHHHHHHBETTSEB--SSS
T ss_pred cCCHHHHHHHHHHHHHhhcCCCccccCCC
Confidence 47889999999999999999999965433
No 36
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=95.30 E-value=0.017 Score=40.24 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHHhhcCCCCccc
Q 035428 12 EPERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQN~dGG~aa 35 (57)
+++.+.++++||++.||.||||+.
T Consensus 144 ~~~~~~~~~~~l~~cQ~~dGGF~~ 167 (299)
T cd02893 144 TDELFEGVAEYILSCQTYEGGFGG 167 (299)
T ss_pred chhhHHHHHHHHHHcCCCCCCcCC
Confidence 455678999999999999999985
No 37
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=95.25 E-value=0.014 Score=40.08 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhcCCCCccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aa 35 (57)
....++++||+++|+.||||+.
T Consensus 148 i~~~~~~~~l~~~q~~dGGF~~ 169 (287)
T cd02894 148 IDVDKAVDYLLSCYNFDGGFGC 169 (287)
T ss_pred hhHHHHHHHHHHcCCCCCCcCC
Confidence 3468899999999999999975
No 38
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=94.94 E-value=0.023 Score=39.06 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhcCCCCccc
Q 035428 15 RFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aa 35 (57)
...++++||+++||+||||+.
T Consensus 101 ~~~~~~~~i~~~q~~dGgf~~ 121 (287)
T cd02894 101 NKEKIAKFIKGLQNEDGSFSG 121 (287)
T ss_pred HHHHHHHHHHHHcCCCCCeec
Confidence 468899999999999999975
No 39
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=94.83 E-value=0.021 Score=38.49 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=22.7
Q ss_pred HHHHHHHhhcCCCCcccc-cCCCCcccccc
Q 035428 19 AVNYILSMQSETGGVPAW-EPRRAPSWLEV 47 (57)
Q Consensus 19 aVd~lLsmQN~dGG~aaf-E~~r~~~~Le~ 47 (57)
|-.=+|++|++||||++| ....+..||.-
T Consensus 2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTA 31 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTA 31 (246)
T ss_dssp HHHHHHTTB-TTSSBBSSTTTSSBBHHHHH
T ss_pred chHHHhcCCCCCCCeeccccCCcccHHHHH
Confidence 556789999999999999 66677777753
No 40
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=94.63 E-value=0.035 Score=39.12 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhcCCCCccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aa 35 (57)
..+.++++||++.||.||||+.
T Consensus 152 i~~~~~~~~i~scq~~dGGF~~ 173 (316)
T PLN03201 152 INVEKAVDYIVSCKNFDGGFGC 173 (316)
T ss_pred hHHHHHHHHHHHhcCCCCCcCC
Confidence 4568899999999999999995
No 41
>PLN02710 farnesyltranstransferase subunit beta
Probab=94.47 E-value=0.035 Score=41.54 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=27.4
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
.++|+.++++.-.+.|+||.++|+++|||+..-
T Consensus 83 ~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~p 115 (439)
T PLN02710 83 ALLGESLDDELENDTIDFLSRCQDPNGGYGGGP 115 (439)
T ss_pred HHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCC
Confidence 356777777777889999999999999998743
No 42
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=94.36 E-value=0.051 Score=35.91 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=26.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCcccccCCC
Q 035428 10 KMEPERFYDAVNYILSMQSETGGVPAWEPRR 40 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~~r 40 (57)
.++++.+.+|++||++.|+.||+|..+....
T Consensus 97 ~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~ 127 (282)
T cd02891 97 DVDENVLARALGWLVPQQKEDGSFRELGPVI 127 (282)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCcCCCCCcc
Confidence 4677889999999999999999998876543
No 43
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=94.00 E-value=0.04 Score=43.93 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhcCCCCcccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aaf 36 (57)
..+.+||++||+-||++|||+-+
T Consensus 638 ~~irka~~Fll~~Q~~~GGWgEs 660 (760)
T KOG0497|consen 638 EAIRKACDFLLSKQNPDGGWGES 660 (760)
T ss_pred HHHHHHHHHHHhhhcccCCCccc
Confidence 56899999999999999999954
No 44
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=93.65 E-value=0.058 Score=37.85 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhcCCCCccccc
Q 035428 16 FYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aafE 37 (57)
-.+.++||.++|+.||||+.-.
T Consensus 114 r~~i~~~l~~~q~~dGgF~~~~ 135 (307)
T cd02895 114 RKAILNFLSKLQLPDGSFGSVL 135 (307)
T ss_pred HHHHHHHHHHhCCCCCCccCCc
Confidence 4668999999999999999753
No 45
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.072 Score=38.83 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcCCCCcccccC
Q 035428 17 YDAVNYILSMQSETGGVPAWEP 38 (57)
Q Consensus 17 ~daVd~lLsmQN~dGG~aafE~ 38 (57)
.+-|.|+++.||++|||+.++-
T Consensus 69 eeiv~~v~~C~~~~GGfa~~~G 90 (329)
T KOG0366|consen 69 EEIVSFVLSCQHEDGGFAGCPG 90 (329)
T ss_pred HHHHHHHHheecCCCCcCCCCC
Confidence 4579999999999999999875
No 46
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.15 E-value=0.049 Score=38.86 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhcCCCCcc
Q 035428 15 RFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~a 34 (57)
++.+-+.+|.|+||.||||-
T Consensus 229 ~i~~~~rFI~slqN~nGGFR 248 (274)
T COG1689 229 CISDHIRFIRSLQNQNGGFR 248 (274)
T ss_pred CchHHHHHHHHhhcCCCCee
Confidence 47788999999999999983
No 47
>PLN02710 farnesyltranstransferase subunit beta
Probab=92.96 E-value=0.095 Score=39.29 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 11 MEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
++.+-....++||++.|+.+|||+.-
T Consensus 188 l~~~~~e~~~~~I~scQ~~dGGF~g~ 213 (439)
T PLN02710 188 LDDELVKGVGDYILSCQTYEGGIGGE 213 (439)
T ss_pred CchhhHHHHHHHHHHhCCCCCCCCCC
Confidence 34456778999999999999999953
No 48
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.079 Score=39.00 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 10 KMEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
.++.+-..-+||||.+.||=+|||++-
T Consensus 170 ~~~~~~~e~~vdyl~kCqnyeGGFg~~ 196 (342)
T COG5029 170 DLDKELFEGAVDYLKKCQNYEGGFGLC 196 (342)
T ss_pred hcchhhhHHHHHHHHHhhccCCcccCC
Confidence 456677788999999999999999974
No 49
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=90.47 E-value=0.3 Score=34.29 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHHhh----cCCCCccccc
Q 035428 12 EPERFYDAVNYILSMQ----SETGGVPAWE 37 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQ----N~dGG~aafE 37 (57)
+...-.+.++||.++| +++|||+..-
T Consensus 47 ~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~ 76 (307)
T cd02895 47 LVEEKDDIIEWIYSLQVLSNLPRGGFRGSS 76 (307)
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Confidence 3444577899999999 9999999864
No 50
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=0.21 Score=36.51 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 11 MEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
++.-....||+|+++.-|-||||++-
T Consensus 159 ld~~nve~aVd~~~~CyN~DGGFG~~ 184 (329)
T KOG0366|consen 159 LDTINVEKAVDFVLSCYNFDGGFGCR 184 (329)
T ss_pred HHHhhHHHHHHHHHhhcccCCCcCCC
Confidence 44556788999999999999999864
No 51
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.17 E-value=0.49 Score=35.66 Aligned_cols=31 Identities=16% Similarity=0.425 Sum_probs=28.6
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aa 35 (57)
++.++.++++-..++|++|-..|.+.|||+.
T Consensus 111 ~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgG 141 (423)
T KOG0365|consen 111 ALLDEWLDDDVKENAIDFLFTCQGPEGGFGG 141 (423)
T ss_pred HHhcCcCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 5778899999999999999999999999973
No 52
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=87.54 E-value=0.55 Score=40.18 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCCcccccC-CCCccccc
Q 035428 12 EPERFYDAVNYILSMQSETGGVPAWEP-RRAPSWLE 46 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQN~dGG~aafE~-~r~~~~Le 46 (57)
-.+++..|+--|++||+.+|+|+-|.. ..+..||.
T Consensus 1197 ~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~lt 1232 (1621)
T COG2373 1197 LRARLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLT 1232 (1621)
T ss_pred HHHHHHHHHHHHHhhhhcCCceeecCCCCCcchhhh
Confidence 356899999999999999999999998 55556654
No 53
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=83.91 E-value=0.82 Score=35.35 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhcCCCCccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aa 35 (57)
.+.|+|.|||.-=||+.|||+-
T Consensus 380 aaFyaAadWlV~NQd~kGGW~~ 401 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDDKGGWSV 401 (594)
T ss_pred HHHHHHHHHHhhCCCCCCCCcc
Confidence 4799999999999999999984
No 54
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=82.11 E-value=2 Score=26.19 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHhhcCCCCcccccCCCCc
Q 035428 12 EPERFYDAVNYILSMQSETGGVPAWEPRRAP 42 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQN~dGG~aafE~~r~~ 42 (57)
..+-+..||++||.-.++.-||.-||-+++.
T Consensus 54 GteIiEnAVefiLrSMtR~tgF~E~~dk~ge 84 (88)
T PF15144_consen 54 GTEIIENAVEFILRSMTRSTGFMEFEDKQGE 84 (88)
T ss_pred hHHHHHHHHHHHHHHhhcccCceecCCCCCC
Confidence 4567999999999999999999999976654
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=80.82 E-value=0.7 Score=35.58 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCccc
Q 035428 13 PERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~aa 35 (57)
..++.+|+.|||++|..+|-|-.
T Consensus 351 ~~~i~~a~e~LL~~Q~~~GsW~g 373 (517)
T COG1657 351 GQPIERALEWLLSDQEPDGSWYG 373 (517)
T ss_pred CCcccHHHhhhhhhccccCceee
Confidence 46689999999999999998854
No 56
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=79.35 E-value=1.2 Score=27.27 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCCCCcccccCCCCc
Q 035428 17 YDAVNYILSMQSETGGVPAWEPRRAP 42 (57)
Q Consensus 17 ~daVd~lLsmQN~dGG~aafE~~r~~ 42 (57)
.+|||||...|-.+..|++ +.+|..
T Consensus 33 sEAVDwL~~~l~~n~~fg~-~vtR~~ 57 (92)
T cd04447 33 SEAVDWLHELLRSNSNFGP-EVTRQQ 57 (92)
T ss_pred HHHHHHHHHHHHhccccCC-CCCHHH
Confidence 3799999999877666887 666643
No 57
>PLN02592 ent-copalyl diphosphate synthase
Probab=76.88 E-value=1.7 Score=34.97 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhcCCCCccc
Q 035428 15 RFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aa 35 (57)
..-.+|+|||.=|-+||||+.
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~ 136 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGD 136 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCC
Confidence 344689999999999999987
No 58
>PLN02279 ent-kaur-16-ene synthase
Probab=75.07 E-value=2 Score=34.37 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhcCCCCcccc
Q 035428 16 FYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aaf 36 (57)
.-.+++|||.=|-+||+|+..
T Consensus 75 Fp~~~~wil~nQ~~dGsWg~~ 95 (784)
T PLN02279 75 FPECVKWLLENQLEDGSWGLP 95 (784)
T ss_pred ChHHHHHHHhcCCCCCCCCCC
Confidence 455899999999999999975
No 59
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=73.81 E-value=3.3 Score=29.79 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHhhcCCCC
Q 035428 13 PERFYDAVNYILSMQSETGG 32 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG 32 (57)
..++.+||+|||..|=..||
T Consensus 136 ~~Ai~Rgid~ILktQ~~~gg 155 (290)
T TIGR02474 136 KTAVTKGIECILKTQVVQNG 155 (290)
T ss_pred HHHHHHHHHHHHHhhcccCC
Confidence 45799999999999965543
No 60
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=73.43 E-value=3 Score=29.84 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 035428 15 RFYDAVNYILSMQSETGG 32 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG 32 (57)
.++-++||||.||+++|+
T Consensus 99 e~kwg~D~llkm~~~~~~ 116 (444)
T PF00759_consen 99 EAKWGLDWLLKMQDSDGT 116 (444)
T ss_dssp HHHHHHHHHHHTBSCTTE
T ss_pred HHHHHHHHHHhccCCCCc
Confidence 466789999999999544
No 61
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.74 E-value=5.9 Score=30.03 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=20.7
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428 6 IVGEKMEPERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aa 35 (57)
+++-+++ |-..-..|||.+.||=.|||+.
T Consensus 212 llni~~d-eL~eG~~~wi~~CQtyEGG~GG 240 (423)
T KOG0365|consen 212 LLNIPMD-ELFEGTLDWIASCQTYEGGFGG 240 (423)
T ss_pred HHCCCcH-HHHHHHHHHHHhcccccCCcCC
Confidence 4444444 4445557999999999999974
No 62
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.98 E-value=5.4 Score=29.60 Aligned_cols=20 Identities=15% Similarity=0.410 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhcCCCCccc
Q 035428 16 FYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aa 35 (57)
+.|-++|++.-|-.+|||-.
T Consensus 230 ~erlirWli~RQ~~sgGfqG 249 (347)
T KOG0367|consen 230 VERLIRWLIQRQVSSGGFQG 249 (347)
T ss_pred HHHHHHHHHHHhhccCCcCC
Confidence 78899999999999999964
No 63
>PLN02345 endoglucanase
Probab=59.72 E-value=8 Score=29.30 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhcCCCCc
Q 035428 15 RFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~ 33 (57)
.++-+.||||.||.++|++
T Consensus 87 elkw~~Dyllk~~~~~~~~ 105 (469)
T PLN02345 87 SLKWITDYLINAHPSENVL 105 (469)
T ss_pred HHhHHHHHHHHhcCCCCeE
Confidence 4777999999999998876
No 64
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.18 E-value=10 Score=30.35 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=35.1
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcC-CCCcccccCCCCcccccc
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQSE-TGGVPAWEPRRAPSWLEV 47 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQN~-dGG~aafE~~r~~~~Le~ 47 (57)
.-.+..++++.|.+|+.-|.+..+. .|||+++.|--.+..|+.
T Consensus 174 ~~~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~ 217 (667)
T COG1331 174 PSAGEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLF 217 (667)
T ss_pred CCccccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHHHH
Confidence 3457789999999999999999996 599999988766665554
No 65
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=58.34 E-value=7.1 Score=23.83 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=10.6
Q ss_pred HHHHHHHHH--hhcCC
Q 035428 17 YDAVNYILS--MQSET 30 (57)
Q Consensus 17 ~daVd~lLs--mQN~d 30 (57)
.+|||||++ +||.+
T Consensus 31 sEaVDwL~~~l~~n~~ 46 (95)
T cd04446 31 SEAVDVVLAHLMQNKY 46 (95)
T ss_pred HHHHHHHHHHHhhccc
Confidence 469999977 67754
No 66
>PLN02266 endoglucanase
Probab=54.26 E-value=11 Score=28.92 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhcCCCCc
Q 035428 14 ERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~ 33 (57)
+.++-++||||.||..+|++
T Consensus 134 delkw~~D~llk~~~~~~~v 153 (510)
T PLN02266 134 DAIRWATDYLLKATAHPDTI 153 (510)
T ss_pred HHHHHHHHHHHHhccCCCeE
Confidence 45778999999999988765
No 67
>PLN02308 endoglucanase
Probab=53.93 E-value=12 Score=28.60 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhcCCCCc
Q 035428 14 ERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~ 33 (57)
+.++-+.||||.||..+|++
T Consensus 116 deikw~~D~llkm~~~~~~v 135 (492)
T PLN02308 116 KAVKWATDYLMKATAIPNVV 135 (492)
T ss_pred HHHHHHHHHHHHhcCCCCeE
Confidence 45778899999999999876
No 68
>PLN02909 Endoglucanase
Probab=53.78 E-value=12 Score=28.65 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhcCCCCc
Q 035428 14 ERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~ 33 (57)
+.++-++||||.||..+|++
T Consensus 124 deikw~~D~llk~~~~~~~~ 143 (486)
T PLN02909 124 AAIRWGTDYFLKAASRKNRL 143 (486)
T ss_pred HHHHHHHHHHHHhccCCCeE
Confidence 34677999999999988765
No 69
>PF03677 UPF0137: Uncharacterised protein family (UPF0137); InterPro: IPR005350 This family of bacterial proteins includes a number of plasmid-encoded virulence proteins.
Probab=52.81 E-value=9.8 Score=27.07 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 11 MEPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
+..||+++|-+.|-+|-..+|.|+||=
T Consensus 83 L~GErI~kvreiLk~~~y~egtFSaWl 109 (243)
T PF03677_consen 83 LHGERIKKVREILKSMNYREGTFSAWL 109 (243)
T ss_pred HhHHHHHHHHHHHhhccCccchHHHHH
Confidence 456899999999999999999999984
No 70
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=52.48 E-value=21 Score=18.53 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHhh
Q 035428 13 PERFYDAVNYILSMQ 27 (57)
Q Consensus 13 ~~rl~daVd~lLsmQ 27 (57)
..-|..||++|..||
T Consensus 41 ~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 41 ASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 356999999999887
No 71
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.74 E-value=25 Score=22.17 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=28.9
Q ss_pred CCCCChHHHHHHHHHHHHh-----hcCCCCcccccCCCCc
Q 035428 8 GEKMEPERFYDAVNYILSM-----QSETGGVPAWEPRRAP 42 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsm-----QN~dGG~aafE~~r~~ 42 (57)
+..|+...+|++++.|... -+..||+..|+....+
T Consensus 50 ~p~islaTVYr~L~~l~e~Glv~~~~~~~~~~~y~~~~~~ 89 (145)
T COG0735 50 GPGISLATVYRTLKLLEEAGLVHRLEFEGGKTRYELNSEP 89 (145)
T ss_pred CCCCCHhHHHHHHHHHHHCCCEEEEEeCCCEEEEecCCCC
Confidence 5668888999999998766 6788999999977764
No 72
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=47.18 E-value=29 Score=24.06 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=25.0
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPAWEPR 39 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~ 39 (57)
+++--.+.+.++++++.+.+.++|.|++....
T Consensus 182 ~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~ 213 (343)
T cd04794 182 LKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGN 213 (343)
T ss_pred CCccHHHHHHHHHHHHHHhhccCCCCCCccCC
Confidence 34444567999999999999999999876543
No 73
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes ribosomal L4/L1 from eukaryotes and plants and L4 from bacteria. L4 from yeast has been shown to bind rRNA []. These proteins have 246 (plant) to 427 (human) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_D 1VSA_D 3D5D_F 3MS1_E 3F1F_F 3PYO_E 3MRZ_E 3F1H_F 3PYR_E 1VSP_D ....
Probab=47.09 E-value=29 Score=23.04 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhh
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQ 27 (57)
+|+++++.++..+-|+++|.|.++-+
T Consensus 3 L~~~vF~~~~r~~llh~~v~~~~~~~ 28 (192)
T PF00573_consen 3 LSPDVFNVPVRPDLLHRAVVWQLANR 28 (192)
T ss_dssp S-CGGGGSSTSHHHHHHHHHHHHHHT
T ss_pred CCHHHhCCCCcHHHHHHHHHHHHHhc
Confidence 68999999999999999999999874
No 74
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=46.64 E-value=18 Score=20.29 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHHHHh
Q 035428 12 EPERFYDAVNYILSM 26 (57)
Q Consensus 12 ~~~rl~daVd~lLsm 26 (57)
...|+||.+|+|-++
T Consensus 42 ~~RRlYDI~NVLeal 56 (71)
T PF02319_consen 42 QRRRLYDIINVLEAL 56 (71)
T ss_dssp HCHHHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHh
Confidence 678999999999887
No 75
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=46.50 E-value=17 Score=26.08 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHhhcC----CCCccc
Q 035428 13 PERFYDAVNYILSMQSE----TGGVPA 35 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~----dGG~aa 35 (57)
.+++.+||+|||..|=. --+|++
T Consensus 131 ~~A~~kgi~ciL~tQi~~~g~~t~W~q 157 (289)
T PF09492_consen 131 RAAVDKGIDCILKTQIRQNGKLTAWCQ 157 (289)
T ss_dssp HHHHHHHHHHHHHHS-EETTEE----S
T ss_pred HHHHHHHHHHHHHHHcccCCCCCchhh
Confidence 35799999999999983 245654
No 76
>PRK13697 cytochrome c6; Provisional
Probab=46.39 E-value=29 Score=20.11 Aligned_cols=19 Identities=21% Similarity=0.634 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHHHh
Q 035428 8 GEKMEPERFYDAVNYILSM 26 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsm 26 (57)
+..++++.+.+.|.||.+.
T Consensus 87 ~~~ls~~di~~l~~Yi~~~ 105 (111)
T PRK13697 87 KDRLSPDQIEDVAAYVLEQ 105 (111)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999984
No 77
>PLN03009 cellulase
Probab=46.23 E-value=17 Score=27.65 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhcCCCCc
Q 035428 15 RFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~ 33 (57)
.++-++||||.||.++|++
T Consensus 118 eikw~~D~llkm~~~~~~~ 136 (495)
T PLN03009 118 AIRWATDYLLKTVSQPNRI 136 (495)
T ss_pred HHHHHHHHHHHcccCcCeE
Confidence 4566889999998877764
No 78
>KOG2829 consensus E2F-like protein [Transcription]
Probab=45.95 E-value=17 Score=26.79 Aligned_cols=14 Identities=43% Similarity=0.826 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHh
Q 035428 13 PERFYDAVNYILSM 26 (57)
Q Consensus 13 ~~rl~daVd~lLsm 26 (57)
..|+|||+|+|+.|
T Consensus 98 RRRVYDALNVlmAm 111 (326)
T KOG2829|consen 98 RRRVYDALNVLMAM 111 (326)
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999988
No 79
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=45.83 E-value=9.2 Score=14.45 Aligned_cols=7 Identities=14% Similarity=-0.149 Sum_probs=4.8
Q ss_pred cccCccc
Q 035428 46 EVKITST 52 (57)
Q Consensus 46 e~lnpae 52 (57)
|+|+|++
T Consensus 3 eYLpP~~ 9 (9)
T PF02757_consen 3 EYLPPVE 9 (9)
T ss_pred cccCCCC
Confidence 5677764
No 80
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.90 E-value=21 Score=26.59 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhcCCCCcccc
Q 035428 16 FYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aaf 36 (57)
...++.+|.+-|+-||||+.-
T Consensus 176 ~ek~~~yI~~~q~YdgGfg~~ 196 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRYDGGFGQH 196 (347)
T ss_pred HHHHHHHHHHhhccccccccC
Confidence 456899999999999999853
No 81
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.84 E-value=21 Score=26.51 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=14.9
Q ss_pred HHHHHHHHhhcCCCCccc
Q 035428 18 DAVNYILSMQSETGGVPA 35 (57)
Q Consensus 18 daVd~lLsmQN~dGG~aa 35 (57)
.-.+||.++||+||+|-+
T Consensus 130 ~l~~fi~~lk~pdGsF~~ 147 (342)
T COG5029 130 SLASFISGLKNPDGSFRS 147 (342)
T ss_pred HHHHHHHhccCCCCceec
Confidence 356899999999998853
No 82
>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic. This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.
Probab=40.59 E-value=55 Score=20.60 Aligned_cols=27 Identities=4% Similarity=0.075 Sum_probs=21.7
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCcc
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~a 34 (57)
...++++.+.+-++||.++++.+=+-+
T Consensus 103 ~~~LsdeeI~aLaaYI~sl~~~~~~~~ 129 (133)
T TIGR03872 103 YGNLTLDEMLQIMAWIRHLYTGDPKKA 129 (133)
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 456899999999999999988764433
No 83
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=40.15 E-value=23 Score=30.52 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCcc
Q 035428 11 MEPERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~dGG~a 34 (57)
+++.-|..|++||++.|-.+|.|-
T Consensus 1021 id~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 1021 IDPNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred ecHHHHHHHHHHHHHhhccCceEe
Confidence 667789999999999999999885
No 84
>PLN02613 endoglucanase
Probab=38.56 E-value=29 Score=26.62 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhcCCCCc
Q 035428 14 ERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~ 33 (57)
+.++-+.||||.||..+|++
T Consensus 116 deikw~lD~llkm~~~~~~~ 135 (498)
T PLN02613 116 SAIRWGTDFILRAHTSPTTL 135 (498)
T ss_pred HHHHHHHHHHHHhccCCCeE
Confidence 34667899999998775433
No 85
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=37.21 E-value=32 Score=24.23 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPAWEPR 39 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~ 39 (57)
|+..+.+.+-.-|.-|||+=.+++|||-.-+-
T Consensus 119 g~~~~~D~i~qEV~~LLs~d~~~~GWavlskG 150 (235)
T PF14577_consen 119 GKTDENDPIMQEVKKLLSYDQDEQGWAVLSKG 150 (235)
T ss_pred CCCccccHHHHHHHHHhCCCCCCCceEEEecC
Confidence 55666677777799999998899999987543
No 86
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=35.03 E-value=28 Score=16.65 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=7.7
Q ss_pred HHHHHHHHHH
Q 035428 16 FYDAVNYILS 25 (57)
Q Consensus 16 l~daVd~lLs 25 (57)
+..|++||++
T Consensus 29 ~~~A~~~L~~ 38 (38)
T cd00194 29 VERAVEWLLE 38 (38)
T ss_pred HHHHHHHHhC
Confidence 6778888874
No 87
>PLN00119 endoglucanase
Probab=34.33 E-value=36 Score=26.04 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhcCCCCc
Q 035428 14 ERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~ 33 (57)
+.++-+.||||.||..+|++
T Consensus 121 de~kw~~Dyllk~~~~~~~~ 140 (489)
T PLN00119 121 AALKWATDYLIKAHPQPNVL 140 (489)
T ss_pred HHHHHHHHHHHHhcCCCCeE
Confidence 34667889999999876554
No 88
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=33.24 E-value=44 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCc
Q 035428 13 PERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~ 33 (57)
.+.-.+.++||++.|..+|+|
T Consensus 313 ~~~a~~~l~~l~~~q~~~G~~ 333 (616)
T TIGR01577 313 HDRVDRFFRWAMQTQSRDGSW 333 (616)
T ss_pred HHHHHHHHHHHHHhhCcCCCc
Confidence 355677899999999999986
No 89
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=31.51 E-value=22 Score=24.06 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=22.2
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
.+|-...+.++.-+=...+|.+|.+.|+|+.|-
T Consensus 84 ~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~yl 116 (187)
T PRK10353 84 GIIRHRGKIQAIIGNARAYLQMEQNGEPFADFV 116 (187)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344343444444444458999999999999987
No 90
>PF06236 MelC1: Tyrosinase co-factor MelC1; InterPro: IPR010928 This family consists of several tyrosinase co-factor MELC1 proteins from a number of Streptomyces species. The melanin operon (melC) of Streptomyces antibioticus contains two genes, melC1 and melC2 (apotyrosinase). It is thought that MelC1 forms a transient binary complex with the downstream apotyrosinase MelC2 to facilitate the incorporation of copper ion and the secretion of tyrosinase indicating that MelC1 is a chaperone for the apotyrosinase MelC2 [].; GO: 0005507 copper ion binding, 0042438 melanin biosynthetic process; PDB: 1WX4_B 2ZWD_B 2ZMZ_B 1WX2_B 1WX5_D 3AWX_B 3AWS_B 2ZMY_B 3AX0_B 2ZWG_B ....
Probab=31.35 E-value=17 Score=23.51 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=7.3
Q ss_pred HhhcCCCCccc
Q 035428 25 SMQSETGGVPA 35 (57)
Q Consensus 25 smQN~dGG~aa 35 (57)
-|||-||+|-|
T Consensus 82 vMr~ADGswlS 92 (125)
T PF06236_consen 82 VMRRADGSWLS 92 (125)
T ss_dssp EEE-TTS-EEE
T ss_pred eEEcCCCCEEe
Confidence 39999999865
No 91
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=31.13 E-value=62 Score=21.07 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHHHHh----hcCCCCccc
Q 035428 9 EKMEPERFYDAVNYILSM----QSETGGVPA 35 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsm----QN~dGG~aa 35 (57)
.+|+.+.+.++++.|..+ .+.+|.|-.
T Consensus 51 p~is~~ev~~sL~~L~~~gli~k~~~g~y~~ 81 (171)
T PF14394_consen 51 PKISAEEVRDSLEFLEKLGLIKKDGDGKYVQ 81 (171)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEECCCCcEEE
Confidence 468999999999999988 556666654
No 92
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=30.55 E-value=69 Score=15.51 Aligned_cols=28 Identities=14% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 9 EKMEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
..|+.+.+.|+...+..+.+++|--+.|
T Consensus 3 ~~i~~~~~~d~a~rv~~f~~~ngRlPny 30 (33)
T PF09373_consen 3 GTISKEEYLDMASRVNNFYESNGRLPNY 30 (33)
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCe
Confidence 4577888999999999999999876554
No 93
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=30.27 E-value=37 Score=25.43 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCcccccCCC
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPAWEPRR 40 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r 40 (57)
+++--.+++.+.|+.|+.-|.+||=+++|-...
T Consensus 77 ~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~ 109 (520)
T PF07944_consen 77 GDPELKAKADEIVDELAAAQQPDGYLGTYPEER 109 (520)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCceeccccccc
Confidence 344445789999999999999999888888655
No 94
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=29.16 E-value=30 Score=23.20 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=22.4
Q ss_pred ccccCCCCChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 4 SEIVGEKMEPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 4 ~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
+.+|-...+.+++-.=...++.+|.+.|+|+.|=
T Consensus 78 ~~iIRnr~KI~Avi~NA~~~l~i~~e~gsF~~yl 111 (179)
T PF03352_consen 78 PGIIRNRRKIRAVINNARAILKIQEEFGSFSDYL 111 (179)
T ss_dssp TTSS--HHHHHHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3444444455566666678999999999999873
No 95
>PLN02171 endoglucanase
Probab=29.01 E-value=48 Score=26.18 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcCCCCc
Q 035428 14 ERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~ 33 (57)
+.++-+.||||.||.++|++
T Consensus 120 deikw~~Dyllk~~~~~~~~ 139 (629)
T PLN02171 120 DAVKWGTDYFIKAHPEPNVL 139 (629)
T ss_pred HHHHHHHHHHHHhccCCCeE
Confidence 34777999999999876543
No 96
>PRK12742 oxidoreductase; Provisional
Probab=27.86 E-value=72 Score=19.97 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHHHhhcC
Q 035428 8 GEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~ 29 (57)
+...+++.+-+++.+|++=++.
T Consensus 201 ~~~~~p~~~a~~~~~l~s~~~~ 222 (237)
T PRK12742 201 KRHGRPEEVAGMVAWLAGPEAS 222 (237)
T ss_pred CCCCCHHHHHHHHHHHcCcccC
Confidence 3445677788899888875543
No 97
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=27.81 E-value=43 Score=19.22 Aligned_cols=9 Identities=22% Similarity=0.670 Sum_probs=7.4
Q ss_pred HHHHHHHHH
Q 035428 17 YDAVNYILS 25 (57)
Q Consensus 17 ~daVd~lLs 25 (57)
.++|+||+.
T Consensus 33 ~e~VdWL~~ 41 (83)
T cd04449 33 SEAVSWLIN 41 (83)
T ss_pred HHHHHHHHH
Confidence 479999985
No 98
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=27.49 E-value=45 Score=28.91 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCCCCcccccC--CCCcccccc
Q 035428 16 FYDAVNYILSMQSETGGVPAWEP--RRAPSWLEV 47 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aafE~--~r~~~~Le~ 47 (57)
|..+..-+|+++..||.|++|-. ..+..||.-
T Consensus 973 l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLta 1006 (1436)
T KOG1366|consen 973 LEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTA 1006 (1436)
T ss_pred HHHHHHHHHhhhccCCChhhhcCCCCcccHHHHH
Confidence 67777888999999999999998 777788764
No 99
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=27.13 E-value=45 Score=18.03 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=7.2
Q ss_pred HHHHHHHHH
Q 035428 17 YDAVNYILS 25 (57)
Q Consensus 17 ~daVd~lLs 25 (57)
.++|+||+.
T Consensus 21 ~e~v~WL~~ 29 (74)
T PF00610_consen 21 SEAVDWLMD 29 (74)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 479999994
No 100
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=26.92 E-value=61 Score=16.11 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhh
Q 035428 15 RFYDAVNYILSMQ 27 (57)
Q Consensus 15 rl~daVd~lLsmQ 27 (57)
.+..||+-||.+|
T Consensus 30 ~ve~ai~~LL~~~ 42 (42)
T PF02845_consen 30 DVEAAIDALLEMS 42 (42)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC
Confidence 4678999999875
No 101
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.89 E-value=27 Score=23.06 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHhhcC
Q 035428 11 MEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~ 29 (57)
++.....+||+-||++||.
T Consensus 32 ie~S~~e~av~~Ll~~ene 50 (149)
T COG3120 32 IEASAAEEAVQQLLSLENE 50 (149)
T ss_pred HHHhHHHHHHHHHHHhcCC
Confidence 4455788999999999995
No 102
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=26.70 E-value=71 Score=22.47 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=23.3
Q ss_pred ccCCCCChHHHHHHHHHHHHh----hcCCCCccc
Q 035428 6 IVGEKMEPERFYDAVNYILSM----QSETGGVPA 35 (57)
Q Consensus 6 ~~g~~i~~~rl~daVd~lLsm----QN~dGG~aa 35 (57)
.++.+|+.+.+.+|++.|..+ .+.+|-|-.
T Consensus 146 ~l~p~is~~ev~~sL~~L~~~glikk~~~g~y~~ 179 (271)
T TIGR02147 146 RCFPKISAEQVKESLDLLERLGLIKKNEDGFYKQ 179 (271)
T ss_pred HhCCCCCHHHHHHHHHHHHHCCCeeECCCCcEEe
Confidence 345678999999999999988 566775643
No 103
>PRK09979 putative rho operon leader peptide; Provisional
Probab=26.37 E-value=29 Score=17.49 Aligned_cols=10 Identities=20% Similarity=-0.190 Sum_probs=8.1
Q ss_pred ccCccccccC
Q 035428 47 VKITSTYTKS 56 (57)
Q Consensus 47 ~lnpae~f~~ 56 (57)
.|||++-|+|
T Consensus 10 slnpscrfss 19 (33)
T PRK09979 10 SLNPSCRFSS 19 (33)
T ss_pred cCCccccccc
Confidence 4789998876
No 104
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=26.24 E-value=63 Score=22.26 Aligned_cols=21 Identities=14% Similarity=-0.047 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhcCCCCccc
Q 035428 15 RFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aa 35 (57)
.+.+.++.|...|++||.|..
T Consensus 216 ~~~~~~~~l~~~q~~~G~w~~ 236 (336)
T PF07470_consen 216 IAKKLADALARYQDEDGLWYQ 236 (336)
T ss_dssp HHHHHHHHHHTTSTTTSBEBS
T ss_pred HHHHHHHHHHhcCCCCCCcce
Confidence 456677888899999999854
No 105
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=26.12 E-value=56 Score=16.66 Aligned_cols=17 Identities=41% Similarity=0.491 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHhhcC
Q 035428 13 PERFYDAVNYILSMQSE 29 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~ 29 (57)
..-|..||++|-.+|..
T Consensus 42 ~~iL~~a~~yI~~L~~~ 58 (60)
T cd00083 42 AEILRKAVDYIKSLQEL 58 (60)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35699999999999864
No 106
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=25.97 E-value=49 Score=17.99 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhc
Q 035428 17 YDAVNYILSMQS 28 (57)
Q Consensus 17 ~daVd~lLsmQN 28 (57)
.++|+||+....
T Consensus 24 ~e~v~wL~~~~~ 35 (77)
T smart00049 24 SELVDWLMDNLE 35 (77)
T ss_pred HHHHHHHHHcCC
Confidence 579999987754
No 107
>PF07120 DUF1376: Protein of unknown function (DUF1376); InterPro: IPR010781 This entry is represented by Bacteriophage PBC5 (Sinorhizobium phage PBC5), Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.
Probab=25.66 E-value=1e+02 Score=17.73 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=17.8
Q ss_pred CChHHHHHHHHHHHHhh--cCCCCcc
Q 035428 11 MEPERFYDAVNYILSMQ--SETGGVP 34 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQ--N~dGG~a 34 (57)
.+.+++.+|++.||+-. ..||+|-
T Consensus 52 ~s~~~~~~a~~~ll~~f~~~~dg~~~ 77 (88)
T PF07120_consen 52 CSTKEWRKALDFLLREFFRLEDGRWW 77 (88)
T ss_pred cCHHHHHHHHHHHHHhCCCCCCCCEe
Confidence 34567889999999864 5678774
No 108
>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]
Probab=25.66 E-value=28 Score=26.94 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcCCCCcccccCCCCccccccc
Q 035428 15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVK 48 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~l 48 (57)
++|+-..-|+. |-||+|||...--||-+|
T Consensus 397 eIYrlMr~l~~-----g~wa~F~P~TNvlWL~yL 425 (488)
T COG5072 397 EIYRLMRRLLK-----GRWAQFEPITNVLWLYYL 425 (488)
T ss_pred eHHHHHHHHhc-----CcHHhcccchhhHHHHHH
Confidence 45666666664 999999999999999876
No 109
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.52 E-value=88 Score=22.61 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccCC
Q 035428 14 ERFYDAVNYILSMQSETGGVPAWEPR 39 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aafE~~ 39 (57)
-.+.+-+++|---|++||||+=++.-
T Consensus 6 i~l~rvi~fi~~RrhedGGy~f~~~L 31 (274)
T COG1689 6 INLNRVIEFIEKRRHEDGGYCFVSQL 31 (274)
T ss_pred hhHHHHHHHHHHhhcCCCCeEEeccC
Confidence 35677889999999999999988743
No 110
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=25.37 E-value=40 Score=16.01 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=6.7
Q ss_pred HHHHHHHHH
Q 035428 16 FYDAVNYIL 24 (57)
Q Consensus 16 l~daVd~lL 24 (57)
+.+|++||+
T Consensus 29 ~~~A~~~L~ 37 (37)
T smart00165 29 VERAAEYLL 37 (37)
T ss_pred HHHHHHHHC
Confidence 677888874
No 111
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=24.88 E-value=84 Score=21.72 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=26.2
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCCcccccC
Q 035428 6 IVGEKMEPERFYDAVNYILSMQSETGGVPAWEP 38 (57)
Q Consensus 6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~ 38 (57)
++|-+-+.+...+-+..|-.+|.+.+||..|=+
T Consensus 166 iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP 198 (309)
T TIGR00423 166 MFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIP 198 (309)
T ss_pred EecCCCCHHHHHHHHHHHHhhchhhCCeeeEEe
Confidence 567666777777888888899999999988765
No 112
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=24.14 E-value=58 Score=17.66 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhc
Q 035428 17 YDAVNYILSMQS 28 (57)
Q Consensus 17 ~daVd~lLsmQN 28 (57)
.++|+||+..-.
T Consensus 32 ~e~v~WL~~~~~ 43 (81)
T cd04371 32 SELVDWLLDNLE 43 (81)
T ss_pred HHHHHHHHHhCC
Confidence 479999997754
No 113
>PF08853 DUF1823: Domain of unknown function (DUF1823); InterPro: IPR014952 These proteins are functionally uncharacterised. ; PDB: 2L1N_A.
Probab=23.91 E-value=48 Score=21.21 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=7.9
Q ss_pred HHHHHHHHHh
Q 035428 17 YDAVNYILSM 26 (57)
Q Consensus 17 ~daVd~lLsm 26 (57)
.-||||||+.
T Consensus 103 ATaaNWLL~~ 112 (116)
T PF08853_consen 103 ATAANWLLSY 112 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4579999985
No 114
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=23.83 E-value=1.1e+02 Score=15.76 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.9
Q ss_pred CCChHHHHHHHHHHHHh
Q 035428 10 KMEPERFYDAVNYILSM 26 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsm 26 (57)
.++++.+.+-+.||.++
T Consensus 74 ~ls~~e~~~l~ayl~sl 90 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRSL 90 (91)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 58899999999999886
No 115
>PF03759 PRONE: PRONE (Plant-specific Rop nucleotide exchanger); InterPro: IPR005512 In plants, the small GTP-binding proteins called Rops work as signalling switches that control growth, development and plant responses to various environmental stimuli. Rop proteins (Rho of plants, Rac-like and atRac in Arabidopsis thaliana (Mouse-ear cress)) belong to the Rho family of Ras-related GTP-binding proteins that turn on signalling pathways by switching from a GDP-bound inactive to a GTP-bound active conformation. Activation depends on guanine nucleotide exchange factors (GEFs) that catalyse the otherwise slow GDP dissociation for subsequent GTP binding. The plant-specific RopGEFs represent a unique family of exchange factor that display no homology to any known RhoGEFs from animals and fungi. They comprise a highly conserved catalytic domain termed PRONE (plant-specific Rop nucleotide exchanger) with exclusive substrate specificity for members of the Rop family. The PRONE domain has been shown to be necessary and sufficient to promote nucleotide release from Rop [, , ]. The PRONE domain can be divided into three highly conserved subdomains separated by two short stretches of variable amino acid residues [, ]. It is approximately 370 residues in length and displays an almost all alpha-helical structure except for a beta-turn that protrudes from the main body of the molecule. The overall structure of the PRONE domain can be divided into two subdomains, the first one including helices alpha1-5 and alpha13, the second alpha6-12 [].; GO: 0005089 Rho guanyl-nucleotide exchange factor activity; PDB: 2NTX_B 2NTY_B 2WBL_A.
Probab=23.54 E-value=80 Score=23.75 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=12.6
Q ss_pred CCCChH---HHHHHHHHHHHh
Q 035428 9 EKMEPE---RFYDAVNYILSM 26 (57)
Q Consensus 9 ~~i~~~---rl~daVd~lLsm 26 (57)
+|+.++ +|++-+|||||.
T Consensus 53 EPl~~ekk~~WrrEm~wLLsv 73 (365)
T PF03759_consen 53 EPLSPEKKAMWRREMDWLLSV 73 (365)
T ss_dssp S---HHHHHHHHHHHHHHHGG
T ss_pred CCCChHHHHHHHHhcceeecc
Confidence 456555 699999999996
No 116
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=23.50 E-value=69 Score=22.51 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=28.5
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCC
Q 035428 6 IVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRR 40 (57)
Q Consensus 6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r 40 (57)
++|-+-+.+...+-+.+|-.+|-+-|||+.|=+-+
T Consensus 200 i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~ 234 (343)
T TIGR03551 200 MYGHVETPEHWVDHLLILREIQEETGGFTEFVPLP 234 (343)
T ss_pred EEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEecc
Confidence 56766677788888899999999999999997643
No 117
>KOG3438 consensus DNA-directed RNA polymerase, subunit L [Transcription]
Probab=23.48 E-value=50 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 12 EPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
++..|-.|+.|++ |||+.--|..|-
T Consensus 25 EDHTlgNalR~vI-~k~peVefcGYt 49 (105)
T KOG3438|consen 25 EDHTLGNALRYVI-MKNPEVEFCGYT 49 (105)
T ss_pred cCcchhHHHHHHH-hcCCceEEEecc
Confidence 4567999999999 889998888885
No 118
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=23.29 E-value=33 Score=21.90 Aligned_cols=34 Identities=26% Similarity=0.594 Sum_probs=23.8
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCC
Q 035428 6 IVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRR 40 (57)
Q Consensus 6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r 40 (57)
.-|+.|+.+. ...+++|+.+|.-+.-|.-|++.-
T Consensus 93 ~pGE~it~~~-~~~i~yl~~l~~~~~~fpGf~~e~ 126 (136)
T PF03711_consen 93 VPGERITEET-EEIIDYLLALQEFGAHFPGFEPEI 126 (136)
T ss_dssp -TTEEB-STT-HHHHHHHHHHHHHHTCSTTS--EE
T ss_pred CCccccccch-HHHHHHHHHHHHhCCcCcCCCCcC
Confidence 3466665554 668999999999999999998753
No 119
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=23.26 E-value=70 Score=24.18 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHHHhh
Q 035428 8 GEKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQ 27 (57)
...|-+.|||.| ||||.+=
T Consensus 269 pplmRehRLYQA-DwLlrfY 287 (404)
T COG4277 269 PPLMREHRLYQA-DWLLRFY 287 (404)
T ss_pred CchhHHHHHHHH-HHHHHHh
Confidence 355788999997 9999883
No 120
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=23.23 E-value=25 Score=23.41 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCC-------cccccCCC-CcccccccCcccccc
Q 035428 18 DAVNYILSMQSETGG-------VPAWEPRR-APSWLEVKITSTYTK 55 (57)
Q Consensus 18 daVd~lLsmQN~dGG-------~aafE~~r-~~~~Le~lnpae~f~ 55 (57)
.=+++++.-..++|| |..|.+.| +.. .++|.++.+
T Consensus 98 qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~---lISp~Di~~ 140 (223)
T PF04157_consen 98 QIAEVCLATRSKNGGIISLSDLYCRYNRARGGSE---LISPEDILR 140 (223)
T ss_dssp HHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSS---T--HHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCC---CcCHHHHHH
Confidence 457889999999999 56677766 433 677777654
No 121
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=23.16 E-value=80 Score=21.82 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=16.2
Q ss_pred cCCCCChHHHHHHHHHHHHh
Q 035428 7 VGEKMEPERFYDAVNYILSM 26 (57)
Q Consensus 7 ~g~~i~~~rl~daVd~lLsm 26 (57)
++-|++.+.-...|||||+.
T Consensus 67 l~cP~~~~~~~~~ldWLL~~ 86 (249)
T PF10036_consen 67 LGCPFSSESRQEQLDWLLGL 86 (249)
T ss_pred cCCCCcchhHHHHHHHHHHH
Confidence 45566777889999999987
No 122
>PLN02175 endoglucanase
Probab=23.00 E-value=74 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcC-CCC
Q 035428 16 FYDAVNYILSMQSE-TGG 32 (57)
Q Consensus 16 l~daVd~lLsmQN~-dGG 32 (57)
|+-+.||||.||.. +|+
T Consensus 114 lkw~~Dyllk~~~~~~g~ 131 (484)
T PLN02175 114 IRWATDYLLKCARATPGK 131 (484)
T ss_pred HHHHHHHHHhCcCCCCCe
Confidence 55677779999953 444
No 123
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=22.34 E-value=57 Score=19.16 Aligned_cols=9 Identities=0% Similarity=0.541 Sum_probs=7.2
Q ss_pred HHHHHHHHH
Q 035428 17 YDAVNYILS 25 (57)
Q Consensus 17 ~daVd~lLs 25 (57)
.++||||+.
T Consensus 32 selVdWL~~ 40 (82)
T cd04442 32 KELIDWLIE 40 (82)
T ss_pred HHHHHHHHH
Confidence 369999994
No 124
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=21.60 E-value=85 Score=18.76 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=17.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCC
Q 035428 10 KMEPERFYDAVNYILSMQSETGG 32 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG 32 (57)
+.+++.+..|++||-+++-+.||
T Consensus 55 ~~~~~~~~~a~~~I~~~~~~~G~ 77 (155)
T PF13768_consen 55 PATEENRQEALQWIKSLEANSGG 77 (155)
T ss_pred HHhHHHHHHHHHHHHHhcccCCC
Confidence 45567889999999998765655
No 125
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=21.58 E-value=1.1e+02 Score=17.95 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
|++++...+.+||+-...-.+..+.++.|
T Consensus 52 ~R~v~~~~l~~ai~~~y~~~~~~~~~P~~ 80 (122)
T cd00782 52 GRPVRDKLLSKAINEAYRSYLPKGRYPVF 80 (122)
T ss_pred CeEecCHHHHHHHHHHHHHhCcCCCCcEE
Confidence 56788889999999888777766666554
No 126
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=21.55 E-value=91 Score=21.26 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccccCCCCc
Q 035428 13 PERFYDAVNYILSMQSETGGVPAWEPRRAP 42 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~aafE~~r~~ 42 (57)
..+|.|.++|| |+++|-.|-||.+++.
T Consensus 81 ~~~l~dl~~~l---~~~~G~VAI~DATN~T 107 (222)
T PF01591_consen 81 KEALEDLIEWL---QEEGGQVAIFDATNST 107 (222)
T ss_dssp HHHHHHHHHHH---HTS--SEEEEES---S
T ss_pred HHHHHHHHHHH---hcCCCeEEEEeCCCCC
Confidence 34566666665 6788889999987764
No 127
>PLN02420 endoglucanase
Probab=21.48 E-value=87 Score=24.25 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 035428 14 ERFYDAVNYILSMQSETGG 32 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG 32 (57)
+.++-++||||.||..++.
T Consensus 131 deikw~lD~llk~~~~~~~ 149 (525)
T PLN02420 131 EAIKWGTDYFIKAHTSPNV 149 (525)
T ss_pred HHHHHHHHHHHHhCcCCCc
Confidence 4577899999999987543
No 128
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=21.40 E-value=3.4 Score=25.06 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=13.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCcc
Q 035428 11 MEPERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~dGG~a 34 (57)
+.+..|+++=-.|+--+|+||.|+
T Consensus 64 v~da~L~~gQ~vliE~rn~DGtWP 87 (88)
T PF14836_consen 64 VEDAGLYDGQVVLIEERNEDGTWP 87 (88)
T ss_dssp TTTTT--TTEEEEEEE--TTS--T
T ss_pred HHHccCcCCCEEEEEeeccCCCCC
Confidence 556667777777777889999997
No 129
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=21.20 E-value=73 Score=15.36 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=5.8
Q ss_pred HHHHHHHH
Q 035428 16 FYDAVNYI 23 (57)
Q Consensus 16 l~daVd~l 23 (57)
+..||+||
T Consensus 30 ve~A~~~L 37 (37)
T PF00627_consen 30 VERAVDWL 37 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 66788876
No 130
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=21.00 E-value=86 Score=16.01 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHHHHh
Q 035428 11 MEPERFYDAVNYILSM 26 (57)
Q Consensus 11 i~~~rl~daVd~lLsm 26 (57)
++..++.++|+++|-+
T Consensus 9 ~Dg~aiDqgiay~Lm~ 24 (34)
T PF06376_consen 9 SDGKAIDQGIAYMLML 24 (34)
T ss_pred CCcchhhHHHHHHHHH
Confidence 5556899999999854
No 131
>PRK08445 hypothetical protein; Provisional
Probab=20.71 E-value=1e+02 Score=22.04 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=24.2
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 6 IVGEKMEPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
++|-.-+.+..-+-+..|-.+|++.|||.+|=
T Consensus 203 i~G~~Et~edr~~~l~~lreLq~~~~g~~~fi 234 (348)
T PRK08445 203 MFGTVENDEEIIEHWERIRDLQDETGGFRAFI 234 (348)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHhCCeeEEe
Confidence 46655555666667777888899999999865
No 132
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.70 E-value=61 Score=19.84 Aligned_cols=21 Identities=5% Similarity=0.251 Sum_probs=18.5
Q ss_pred HHHHHHHHhhcCCCCcccccC
Q 035428 18 DAVNYILSMQSETGGVPAWEP 38 (57)
Q Consensus 18 daVd~lLsmQN~dGG~aafE~ 38 (57)
-+..++-.+.++.|.|+.|+.
T Consensus 15 ~g~~C~ka~~~r~g~F~~y~~ 35 (107)
T PF08821_consen 15 PGTGCFKAFNERKGAFARYDD 35 (107)
T ss_pred cchHHHHHHHhccCccccCCC
Confidence 357889999999999999985
No 133
>PF08302 tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase domain; InterPro: IPR015965 This entry represents a phosphodiesterase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=20.55 E-value=95 Score=21.57 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCccccCCCCChHHHHHHHHHHHH-hh
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILS-MQ 27 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLs-mQ 27 (57)
..|.+|++.-+++.|..|+++-|+ ++
T Consensus 16 ~yP~Lv~~~Ps~e~id~A~~~Al~~Yk 42 (257)
T PF08302_consen 16 KYPNLVPEVPSDEEIDEAFQKALNEYK 42 (257)
T ss_pred hCchhcCCCCCHHHHHHHHHHHHhhCC
Confidence 357888888899999999999999 75
No 134
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=20.52 E-value=72 Score=18.41 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=7.7
Q ss_pred HHHHHHHHHh
Q 035428 17 YDAVNYILSM 26 (57)
Q Consensus 17 ~daVd~lLsm 26 (57)
.++||||+.-
T Consensus 32 selVdWL~~~ 41 (81)
T cd04448 32 KELVNWLIRQ 41 (81)
T ss_pred HHHHHHHHHc
Confidence 4699999953
No 135
>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]
Probab=20.37 E-value=17 Score=27.21 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHhhcCC
Q 035428 13 PERFYDAVNYILSMQSET 30 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~d 30 (57)
.+|+|+|+..+|+||++-
T Consensus 179 vtRyyrapevil~~~~ke 196 (369)
T KOG0665|consen 179 VTRYYRAPEVILGMGYKE 196 (369)
T ss_pred heeeccCchheeccCCcc
Confidence 679999999999999764
No 136
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=20.33 E-value=1.1e+02 Score=22.40 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhcCCCCcc
Q 035428 15 RFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~a 34 (57)
.+...++.|++-|-+||-|+
T Consensus 216 ~i~~~~~kIl~~q~~~G~~G 235 (326)
T PF01122_consen 216 AIRSLVEKILSQQKPNGLFG 235 (326)
T ss_dssp HHHHHHHHHHHTB-TTS-BS
T ss_pred HHHHHHHHHHHhcCCCCccc
Confidence 46777888899999999887
No 137
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.30 E-value=83 Score=25.05 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=25.2
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
|+|.=++|+...|+-+-..|++||=.++|-
T Consensus 83 ~dp~Lekr~D~vi~~~a~~QdedGYl~~~~ 112 (589)
T COG3533 83 GDPELEKRIDEVVEELARAQDEDGYLGGWF 112 (589)
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCccccee
Confidence 566668899999999999999998776664
No 138
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=20.03 E-value=91 Score=17.81 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=21.4
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aa 35 (57)
.+|.+-|++++--+|+.+|.=. ||+..
T Consensus 23 ~~P~i~g~~vdL~~Ly~~V~~~-------GG~~~ 49 (93)
T smart00501 23 KIPVIGGKPLDLYRLYRLVQER-------GGYDQ 49 (93)
T ss_pred cCCeECCEeCcHHHHHHHHHHc-------cCHHH
Confidence 3577889999999999998654 77764
Done!